Your job contains 1 sequence.
>006320
MDRSRSKRNYYYDHQDYDGDTMGRTKPRYNHYYQPNNNYRHRGNNNNNTNNIMNNNTSIN
NSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPG
DEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGV
GGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSM
SEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTA
RRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVG
RVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTR
IVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTD
ELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITP
AREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPL
VTRSTLEVVLPDYAVPKLITKSKTLLTRFSEVSLLLHLINLFNFVKVYLR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006320
(650 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 1574 9.6e-174 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 441 6.8e-51 2
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 351 2.7e-37 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 279 4.1e-37 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 377 2.0e-32 1
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 302 5.2e-24 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 180 5.9e-20 4
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 241 1.1e-16 2
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 209 9.6e-14 1
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 163 4.1e-11 1
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 155 4.3e-09 2
UNIPROTKB|O42254 - symbol:IGF2BP1 "Insulin-like growth fa... 133 3.2e-08 2
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 148 3.2e-08 2
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 147 3.4e-08 2
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 147 3.9e-08 2
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 147 4.0e-08 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 158 4.9e-08 1
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 128 5.0e-08 2
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 147 5.9e-08 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 133 7.0e-08 1
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 151 1.2e-07 1
ZFIN|ZDB-GENE-000308-1 - symbol:igf2bp3 "insulin-like gro... 124 1.2e-07 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 149 1.6e-07 1
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 149 1.6e-07 1
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 148 2.0e-07 1
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 149 2.0e-07 1
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 126 2.1e-07 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 148 2.9e-07 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 147 3.3e-07 1
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 140 3.4e-07 2
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 140 3.5e-07 2
MGI|MGI:1890357 - symbol:Igf2bp1 "insulin-like growth fac... 125 3.8e-07 2
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 150 4.0e-07 1
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 148 4.1e-07 2
UNIPROTKB|O73932 - symbol:igf2bp3-a "Insulin-like growth ... 120 4.3e-07 2
UNIPROTKB|E1BKJ7 - symbol:IGF2BP1 "Uncharacterized protei... 124 4.8e-07 2
UNIPROTKB|E2RTC5 - symbol:IGF2BP1 "Uncharacterized protei... 124 4.8e-07 2
UNIPROTKB|Q9NZI8 - symbol:IGF2BP1 "Insulin-like growth fa... 124 4.8e-07 2
UNIPROTKB|I3L9X2 - symbol:IGF2BP1 "Uncharacterized protei... 124 4.8e-07 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 135 5.1e-07 1
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 148 7.1e-07 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 148 7.1e-07 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 148 8.0e-07 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 148 8.0e-07 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 148 8.0e-07 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 148 8.0e-07 2
RGD|708580 - symbol:Igf2bp1 "insulin-like growth factor 2... 121 1.0e-06 2
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 128 1.1e-06 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 109 1.1e-06 2
UNIPROTKB|Q5ZLP8 - symbol:IGF2BP3 "Insulin-like growth fa... 113 1.5e-06 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 139 2.1e-06 1
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 139 2.1e-06 1
UNIPROTKB|O57526 - symbol:igf2bp3-b "Insulin-like growth ... 112 2.5e-06 2
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 112 2.5e-06 3
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 139 2.6e-06 1
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 139 2.8e-06 1
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 139 2.8e-06 1
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 138 2.9e-06 1
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 107 3.5e-06 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 132 3.8e-06 1
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 141 3.8e-06 1
ZFIN|ZDB-GENE-060503-536 - symbol:igf2bp2b "insulin-like ... 118 4.3e-06 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 136 4.3e-06 1
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 110 4.8e-06 2
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 110 4.8e-06 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 135 5.0e-06 1
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 138 5.7e-06 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 136 5.7e-06 1
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 136 5.7e-06 1
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 136 5.7e-06 1
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 136 5.7e-06 1
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 136 5.7e-06 1
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 136 5.7e-06 1
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 135 5.7e-06 1
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 135 7.1e-06 1
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 135 7.6e-06 1
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 108 1.0e-05 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 132 1.1e-05 1
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 99 1.1e-05 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 98 1.3e-05 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 131 1.6e-05 1
UNIPROTKB|K7GM69 - symbol:RFC4 "Uncharacterized protein" ... 125 1.6e-05 1
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 135 1.7e-05 1
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 99 2.6e-05 2
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 99 2.7e-05 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 100 3.2e-05 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 98 3.4e-05 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 98 3.4e-05 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 99 3.7e-05 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 99 4.1e-05 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 99 4.1e-05 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 99 4.1e-05 2
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 127 4.2e-05 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 129 4.8e-05 1
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 100 5.8e-05 2
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 128 9.5e-05 1
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 112 0.00010 1
FB|FBgn0261552 - symbol:ps "pasilla" species:7227 "Drosop... 105 0.00028 3
UNIPROTKB|F1S0X8 - symbol:FUBP3 "Uncharacterized protein"... 123 0.00032 1
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 87 0.00035 2
WARNING: Descriptions of 8 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 1574 (559.1 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 327/564 (57%), Positives = 405/564 (71%)
Query: 73 PSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEISDTR 132
P M TTTYRILCHD RQHTGAWINVHEL+PGD ERIIEISD R
Sbjct: 62 PETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNR 121
Query: 133 RRDPEGRMPSFSPAQEALFLIHDRILESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRV 192
RRDP+GRMPSFSPAQEALF +HDRILES+ RV
Sbjct: 122 RRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGG-----GRV 176
Query: 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDIN 252
TR+VVSRMHVGCLLGKGGKIIEQMR+ETKT IRILPR+ +LPRCVS+SEEIVQ+VG++N
Sbjct: 177 VTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELN 236
Query: 253 NVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFP--DDDYVPHMNNTARRPSMDGARF 310
VKNA+AI+SSRLRESQHRDRS+F GR HSP+R F DDY+P + RR S D RF
Sbjct: 237 AVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQL----RRQSSD--RF 290
Query: 311 SGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIV 370
N+R+NN+ R S Y+ EA A P+ ++V Y E+LVF++LCP DK+ RV+GES+GI+
Sbjct: 291 PRGNFRNNNFSSRQSNYAEEAPAVPVGENV---YSEELVFQILCPADKIVRVVGESQGII 347
Query: 371 ELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDN 430
+LLQNEIGVD++V+DPV GSDEQIITISSEE PDD FPAQEALLHIQT+I+DL DKDN
Sbjct: 348 DLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDN 407
Query: 431 IITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQ 490
+ITTRLLVPS + CLEG+ GS+SE+ R TG ++QIL+REE+P C S D ++QI GEI+
Sbjct: 408 LITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIR 467
Query: 491 AARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDP 550
AAR+ALVE+T LRS+++++ QKETPP+ST TG V A +++ + +
Sbjct: 468 AAREALVELTLLLRSHMFKELSQKETPPASTSTTGPLEGV--AGVMEVASSNNTIQSREG 525
Query: 551 PAATHQSVQIPATSQPS-KEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVV 609
P +++ ++Q +T P KE GSV+ K ESE RE+VP +R+ +PLVTRSTLEVV
Sbjct: 526 PTSSNLNLQQVSTILPQFKEGFGSVA---KAGESEHREEVPVTTSRMAVPLVTRSTLEVV 582
Query: 610 LPDYAVPKLITKSKTLLTRFSEVS 633
LP+ VPKL+TKS+ L + SE S
Sbjct: 583 LPEAVVPKLVTKSRNKLAQISEWS 606
Score = 136 (52.9 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 1 MDRSRSKRNYYYDHQDYDGDTMGRTKPRYNHYY 33
M+RSRSKRNY+YD QDYDGD+M R+KPRYN+ Y
Sbjct: 1 MERSRSKRNYHYD-QDYDGDSMPRSKPRYNNNY 32
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 108 TGAWINVHELIPGDEERIIEISDT 131
+GA + + E P + + II IS T
Sbjct: 606 SGASVTIVEDRPEETQNIIRISGT 629
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 441 (160.3 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 108/322 (33%), Positives = 181/322 (56%)
Query: 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGD 250
+V +++V +GC+LG+GG+I++ +R ET QIRI+ +D ++P C S+E++Q+ G+
Sbjct: 146 QVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIV-KDRNMPLCALNSDELIQISGE 204
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARF 310
+ VK A+ I+SRL E+ R ++ L S +P + H G R
Sbjct: 205 VLIVKKALLQIASRLHENPSRSQN-----LLSSSGGYPAGSLMSHAG---------GPRL 250
Query: 311 SGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIV 370
G +YG +S P +D P + R++ P++ + VIG+ ++
Sbjct: 251 VGLAPLMGSYGRDAGDWSRPLYQPPRNDP--P--ATEFFIRLVSPVENIASVIGKGGALI 306
Query: 371 ELLQNEIGVDLKV-ADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L+ E +KV + +G+D +ITIS+ E +D P EA++ +Q + D
Sbjct: 307 NQLRQETRATIKVDSSRTEGND-CLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDS 365
Query: 430 NII--TTRLLVPSSEIGCLEGRDGSL-SEMRRSTGANIQILSREEVPACVSGTDELVQIV 486
++ TTRLLVPSS IGC+ G+ G++ +EMRR T ANI+IL +E +P S DE+VQI
Sbjct: 366 GLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQIS 425
Query: 487 GEIQAARDALVEVTTRLRSYLY 508
GE+ A++AL+++T+RLR+ ++
Sbjct: 426 GELDVAKEALIQITSRLRANVF 447
Score = 302 (111.4 bits), Expect = 4.9e-24, P = 4.9e-24
Identities = 76/204 (37%), Positives = 115/204 (56%)
Query: 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI--SSEE-- 401
+D VFR LCP+ K+G VIG IV+ L+N+ +++ + + G DE++ITI S+E
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 402 --GPDDE-LFPAQEALLHIQTRIV-DLGADKDNI-----ITTRLLVPSSEIGCLEGRDGS 452
G ++ L PAQ+AL I R+V D +D+ +T +LLVPS +IGC+ GR G
Sbjct: 108 AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQ 167
Query: 453 LSE-MRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDF 511
+ + +R TGA I+I+ +P C +DEL+QI GE+ + AL+++ +RL R
Sbjct: 168 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRS- 226
Query: 512 FQKETPPSSTGPTGSALVVEAASP 535
Q S P GS L+ A P
Sbjct: 227 -QNLLSSSGGYPAGS-LMSHAGGP 248
Score = 105 (42.0 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 79 TTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEI---SDTRRRD 135
T +R LC R T + I + E IPG +ER+I I SD
Sbjct: 50 TVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAF 109
Query: 136 PEGRMPSFSPAQEALFLIHDRILESD 161
+G SPAQ+ALF IHDR++ D
Sbjct: 110 GDGEKV-LSPAQDALFRIHDRVVADD 134
Score = 65 (27.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 25/108 (23%), Positives = 52/108 (48%)
Query: 337 SDSVQPFYG-EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVAD----P-VDGS 390
SD V+ G R+L P ++G ++G+ I+ ++ ++++ P V
Sbjct: 358 SDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASD 417
Query: 391 DEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLV 438
D++++ IS E L A+EAL+ I +R+ D++ ++ + V
Sbjct: 418 DDEMVQISGE------LDVAKEALIQITSRLRANVFDREGAVSALMPV 459
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 351 (128.6 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 79/198 (39%), Positives = 119/198 (60%)
Query: 335 PMSDSVQPF----YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS 390
PM + V PF E++ FR+LCP DKVG +IG+ +V LQNE G +KV+DP S
Sbjct: 259 PMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDS 318
Query: 391 DEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRD 450
+E+II IS+ E + AQ+ ++ + RIV++G + + RLLV S IG L G+
Sbjct: 319 EERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKG 378
Query: 451 GSL-SEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLY- 508
G L SEMRR+TGA+I++ ++++ S DE+VQ++G ++ +DAL ++ RLR ++
Sbjct: 379 GHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFP 438
Query: 509 -RDFFQKE--TPPSSTGP 523
R FQ PP GP
Sbjct: 439 GRLPFQGMGGPPPPFMGP 456
Score = 173 (66.0 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 50/156 (32%), Positives = 76/156 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R++V ++G LLGKGG +I +MR T IR+ +D + + S +EIVQV+G++
Sbjct: 360 VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQAT-KYESQHDEIVQVIGNL 418
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFS 311
V++A+ I RLRE+ R F G P F P + P+ S
Sbjct: 419 KTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPYPEPPPPFGPRQYPASPDRYHS 478
Query: 312 --GSNYRSNNYGP---RPSGYSIEAGAAPMSDSVQP 342
G + + +GP RP G + +PMS + QP
Sbjct: 479 PVGPFHERHCHGPGFDRPPGPGFDRPPSPMSWTPQP 514
Score = 116 (45.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 53/202 (26%), Positives = 89/202 (44%)
Query: 453 LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLY--RD 510
+SEMRR+TGA+I++ ++++ S DE+VQ++G ++ +DAL ++ RLR ++ R
Sbjct: 382 ISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRL 441
Query: 511 FFQKE--TPPSSTGPTGSALVVEA-----ASP----IDITPAREVQT----VTDPPAATH 555
FQ PP GP ASP + P E PP
Sbjct: 442 PFQGMGGPPPPFMGPYPEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPGF 501
Query: 556 QSVQIPA--TSQPSKEA--AGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLP 611
P T QP + G V V + R E + + N P++T + +E+V+P
Sbjct: 502 DRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSE-N----PVMTSANVEIVIP 556
Query: 612 DYAVPKLITKSKTLLTRFSEVS 633
+ + ++ + L +VS
Sbjct: 557 QAYLGHVYGENCSNLNYIKQVS 578
Score = 115 (45.5 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
RM+V V L+ KGGK+I+++R ++ +RI D +P C + ++Q+ G ++V
Sbjct: 151 RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQ-IPPCAFPGDVVIQMNGKFSSV 209
Query: 255 KNAVAIISSRLRES 268
K A+ ++++ L+ES
Sbjct: 210 KKALLLVTNCLQES 223
Score = 108 (43.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 402 GPDDELFP--AQEALLHIQTRIV--DLGA--DKDNIIT------TRLLVPSSEIGCLEGR 449
G DDE P AQ ALL + RIV D A D D + R++V +++ L +
Sbjct: 106 GGDDEEAPSSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSK 165
Query: 450 DGSL-SEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLR 504
G + ++R +GA ++I S +++P C D ++Q+ G+ + + AL+ VT L+
Sbjct: 166 GGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQ 221
Score = 94 (38.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD-GSDEQIITISSEEG 402
E + FR+LCP + G +IG+ ++ LQ+ G ++V D + S+E+++ I + G
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSG 74
Score = 67 (28.6 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R++ G ++GKGG +I ++ T ++IR++ +P V E +V ++
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVID---DIP--VPSEERVVLIIAPSGKK 76
Query: 255 KNAVAIISS 263
K+ + S
Sbjct: 77 KDESNVCDS 85
Score = 67 (28.6 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 73 PSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEISDTR 132
P + +R+LC + +GA I V + EERII IS
Sbjct: 270 PVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVIS--A 327
Query: 133 RRDPEGRMPSFSPAQEALFLIHDRILE 159
R + E R S AQ+ + +H+RI+E
Sbjct: 328 RENLERR---HSLAQDGVMRVHNRIVE 351
Score = 64 (27.6 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 352 MLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQ 411
++ P +G V GE+ + ++ G ++ V DP G+ E ++ +S G D+ AQ
Sbjct: 553 IVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVS---GTSDQAHFAQ 609
Query: 412 EALLH 416
+LLH
Sbjct: 610 -SLLH 613
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 279 (103.3 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 66/156 (42%), Positives = 97/156 (62%)
Query: 353 LCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQE 412
+CP + VG VIG+ G + ++ E G ++V D+ II ISS+E +D+ PA
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQS-PAVN 332
Query: 413 ALLHIQTRIVD-LGADKDNI-ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSR 469
A + +Q R + +G D +++ I+TRLLV SS+IGCL G+ G+ +SEMR T ANI+IL +
Sbjct: 333 AAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQK 392
Query: 470 EEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505
E+VP +E+VQI G AA AL +V RLR+
Sbjct: 393 EDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRA 428
Score = 188 (71.2 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 62/243 (25%), Positives = 105/243 (43%)
Query: 79 TTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEISDTRRR---- 134
T YR LC R T + + ++E +PG EER++ + T
Sbjct: 44 TVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHF 103
Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVAT 194
+G + PA +ALF +HD ++ +D V
Sbjct: 104 GDDGEL--VCPALDALFKVHDMVV-ADADQDDGTDDDNDLGEKQT------------VTV 148
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRC-VSMS-EEIVQVVGDIN 252
RM+V +GC++GKGG++I+ +R +T QIR++ +DH LP C +++S +E++ ++G+
Sbjct: 149 RMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDH-LPACALTLSHDELLLIIGEPL 206
Query: 253 NVKNAVAIISSRLRES----QHRDRSHFHGRLHSPDRFFPDDDYVP-HMNNTARRPSMDG 307
V+ A+ ++S L ++ QH S +H P H N RR D
Sbjct: 207 VVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADA 266
Query: 308 ARF 310
F
Sbjct: 267 REF 269
Score = 161 (61.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 42/128 (32%), Positives = 68/128 (53%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
++TR++VS +GCL+GKGG +I +MR T+ IRIL ++ +P+ EE+VQ+ G
Sbjct: 354 ISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKE-DVPKIAREDEEMVQITGSP 412
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFS 311
+ A+ + RLR + D H G + P F P Y+P + ++ + S R
Sbjct: 413 DAAMKALTQVILRLRANSF-DMDH--GLVLLPTSF-P---YIPQVTESSSK-SKYAKRDD 464
Query: 312 GSNYRSNN 319
S SN+
Sbjct: 465 HSKLNSNS 472
Score = 159 (61.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 402 GPDDELF-PAQEALLHIQTRIV-----DLGADKDN------IITTRLLVPSSEIGCLEGR 449
G D EL PA +AL + +V D G D DN +T R+LVPS +IGC+ G+
Sbjct: 104 GDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGK 163
Query: 450 DGS-LSEMRRSTGANIQILSREEVPACVS--GTDELVQIVGEIQAARDALVEVTTRL 503
G + +R T A I+++ ++ +PAC DEL+ I+GE R+AL +V + L
Sbjct: 164 GGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 219
Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISS--EE-- 401
ED V+R LCP+ K G +IG+ I + +++E ++++ + + G +E+++T+ S EE
Sbjct: 42 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 101
Query: 402 --GPDDELF-PAQEALLHIQTRIV-----DLGADKDN 430
G D EL PA +AL + +V D G D DN
Sbjct: 102 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN 138
Score = 49 (22.3 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 13/79 (16%), Positives = 37/79 (46%)
Query: 351 RMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD-----GSDEQIITISSEEGPDD 405
R+L ++G +IG+ ++ +++ ++++ D DE+++ I+ PD
Sbjct: 357 RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGS--PDA 414
Query: 406 ELFPAQEALLHIQTRIVDL 424
+ + +L ++ D+
Sbjct: 415 AMKALTQVILRLRANSFDM 433
Score = 45 (20.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 105 RQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILE 159
RQ TGA I V+ D++ II IS + + SPA A + R E
Sbjct: 295 RQETGATIRVNTSETDDDDCIIFISSKEFYEDQ------SPAVNAAIRLQQRCSE 343
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 377 (137.8 bits), Expect = 2.0e-32, P = 2.0e-32
Identities = 138/475 (29%), Positives = 212/475 (44%)
Query: 77 VTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEI--SDTRRR 134
+ YRILC RQ T A I V + PG ER+I I S + ++
Sbjct: 42 LVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKK 101
Query: 135 DP---EGRMPSFS-P---AQEALFLIHDRILESDXXXXXXXXXXXXXXXXXXXXXXXXXX 187
D E +S P AQ AL +HD I+ S
Sbjct: 102 DIVDIEYSELDYSVPLCSAQAALLKVHDAIVAS----------------LATAAENTKID 145
Query: 188 XXNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR--CVSMSEEIV 245
+ R++V ++GK G II+ +R T+ ++++ +D S P C + IV
Sbjct: 146 RDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIV 205
Query: 246 QVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHS-PDRFFPDDDYVPHMNNTARRPS 304
+ G+ +VK A+ +S+ + + R++ + P D + PS
Sbjct: 206 MISGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQ-AGLYPS 264
Query: 305 MDGARFSGSNYRSNNYGPRPSGYSIEAGAAPM---SDSVQP----FYG----EDLVFRML 353
D G+N S+ G P GY E A P+ S S P F G E L +++
Sbjct: 265 QDSIFQHGANV-SSFIGTLPQGYG-ENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVI 322
Query: 354 CPIDKVGRVIGESEGIVELLQNEIGVDLKVADP-VDGSDEQIITISSEEGPDDELFPAQE 412
C K+GRVIG+ ++ ++ G ++V D + D+ +IT+++ E PDD A E
Sbjct: 323 CSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVE 382
Query: 413 ALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSL-SEMRRSTGANIQILSREE 471
A+L +Q +I D DK + +LLV S IGC+ G+ GS+ SE+R+ T A+I I
Sbjct: 383 AVLLLQEKINDEDEDK---VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNN 439
Query: 472 VPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGS 526
P C DELV+I GE+ RDAL+++ RLR + RD +ET + P S
Sbjct: 440 TPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRD---RETGSRNQPPARS 491
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 302 (111.4 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 126/474 (26%), Positives = 218/474 (45%)
Query: 81 YRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEI--SDTRRRDPEG 138
YRILC R +T A I V + + G +R+I I S +++ G
Sbjct: 38 YRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIG 97
Query: 139 RMPSFS-P---AQEALFLIHDRILESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVAT 194
S + P AQ+AL ++D I+ SD N+
Sbjct: 98 FTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD---------------NKEC- 141
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR--CVSMSEEIVQVVGDIN 252
R++V L+GK G+ I+++R T+ ++++ +D S P C + +V + G+
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 253 NVKNAVAIISSRL-----RE-----SQHRD--------RSHFHGRLHSPDRFFPDDDYVP 294
+VK A+ +S+ + RE S +D S ++ F+ + D++
Sbjct: 202 SVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHI- 260
Query: 295 HMNNTARRPSMDGARFSGSNYRSNNYGPRPSG-YSIEAGAAPMSDSVQ-PFYGEDLVFRM 352
+ A PS A S S+++ Y + + A + P++ E+LVF++
Sbjct: 261 -LQQGAGVPSYFNA-LSVSDFQG--YAETAANPVPVFASSLPVTHGFGGSSRSEELVFKV 316
Query: 353 LCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD--GSDEQIITISSEEGPDDELFPA 410
LCP+ + RVIG+ ++ ++ G ++V D G DE +I +++ E PDD A
Sbjct: 317 LCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMA 376
Query: 411 QEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSR 469
EA+L +Q I D D +N+ +LLV S IGC+ G+ GS ++E+R+ T ANI I
Sbjct: 377 VEAVLLLQEYIND--EDAENV-KMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG 433
Query: 470 EEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLY--RDFFQKETPPSST 521
++ D+LV++ GE+ + RDAL+++ RLR + +D PP+ T
Sbjct: 434 KK--------DDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKPPART 479
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 48/210 (22%), Positives = 94/210 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMS--EEIVQVVG 249
V +++VS +GC++GK G +I ++R T I C+S +++V+V G
Sbjct: 395 VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANI-----------CISKGKKDDLVEVSG 443
Query: 250 DINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARR-PSMDGA 308
++++V++A+ I RLRE D+ R P + ++ +N PS +
Sbjct: 444 EVSSVRDALIQIVLRLREDVLGDKDSVATR--KPPARTDNCSFLSGSSNAGYTLPSFMSS 501
Query: 309 RFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEG 368
S S + + YG P+G ++ P S P +L P + +V+G+ G
Sbjct: 502 MASTSGF--HGYGSFPAGDNVLGSTGPYSYGRLP---SSSALEILIPAHAMSKVMGKGGG 556
Query: 369 IVELLQNEIGVDLKVADPVDGSDEQIITIS 398
+E ++ G ++++ + I +S
Sbjct: 557 NLENIRRISGAMIEISASKTSHGDHIALLS 586
Score = 119 (46.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 34/102 (33%), Positives = 56/102 (54%)
Query: 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI------SS 399
E +V+R+LCPID VG VIG+S ++ +++ +KV D + G +++ITI
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 400 EE-----GPDDELFPAQEALLHIQTRIVDLGADKDNIITTRL 436
EE ++ L AQ+ALL + IV +D++N T +
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIV--ASDEENNTKTNV 133
Score = 51 (23.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 436 LLVPSSEIGCLEGRDG-SLSEMRRSTGANIQI----LSREEVPACVSGTDE 481
+L+P+ + + G+ G +L +RR +GA I+I S + A +SGT E
Sbjct: 540 ILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLE 590
Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 600 LVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEVS 633
L + S LE+++P +A+ K++ K L +S
Sbjct: 532 LPSSSALEILIPAHAMSKVMGKGGGNLENIRRIS 565
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 180 (68.4 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 51/168 (30%), Positives = 87/168 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
+VF+++ G +IG+ I+ LQNE G + V P+ S E+++T+S+ E +
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 408 FPAQEALLHIQTRIVDLGADKD------N--IITTRLLVPSSEIGCLEGRDGSLSEMRRS 459
AQ AL + R V++ +K N I+ T+LLVPS G +G+ E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNG-NGN-REAIIA 394
Query: 460 TGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507
TGA++ I +V +S + +++I GE + AL V+++LR L
Sbjct: 395 TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENL 442
Score = 126 (49.4 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 196 MVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVK 255
++ R +G +LG GGK +E MR + IR+LP P C + ++E++Q+ GD+ VK
Sbjct: 144 ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP----PICGTKNDELIQITGDVLAVK 199
Query: 256 NAVAIISSRLRES 268
A+ ++SS ++ +
Sbjct: 200 KALVMVSSYIQNN 212
Score = 107 (42.7 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 421 IVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSE-MRRSTGANIQILSREEVPACVSGT 479
+VD G D++ +L ++IG + G G E MRR++GA I++L P C +
Sbjct: 132 VVD-GEDEEAYCG--ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKN 185
Query: 480 DELVQIVGEIQAARDALVEVTTRLRS 505
DEL+QI G++ A + ALV V++ +++
Sbjct: 186 DELIQITGDVLAVKKALVMVSSYIQN 211
Score = 82 (33.9 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI 397
++ R++C +G +IG + +V L+ E G + PV+GSD ++ I
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFI 74
Score = 74 (31.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQ 490
IT L V +G L GRDG+ + +++ +GAN+ + P +GT+ V I G +
Sbjct: 564 ITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKD----P---TGTEATVLISGNPE 616
Query: 491 AARDAL 496
AR A+
Sbjct: 617 QARTAM 622
Score = 57 (25.1 bits), Expect = 4.3e-07, Sum P(4) = 4.3e-07
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 392 EQIITISSEEGPDDELFP-AQEALLHIQTRIV--------DLGADKDNIITTRLLVPSSE 442
E + T + E P E FP + + L T IV D G + + +++ S
Sbjct: 228 ESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVV 287
Query: 443 IGCLEGRDGSLSE-MRRSTGANIQI 466
G + G+ G++ ++ TGA+I +
Sbjct: 288 AGGIIGKQGTIIRALQNETGASISV 312
Score = 52 (23.4 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 34/155 (21%), Positives = 62/155 (40%)
Query: 484 QIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPARE 543
+++GE++A E + RS +Y Q P G +L V AA P D+ R
Sbjct: 446 KVLGEMRARVSNPYE-SAGGRSQIYN--LQ---PSQQDASRGDSLSVSAAVP-DLKMVRS 498
Query: 544 VQTVTDPPAATHQSV-----QIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPL 598
V + H V ++ + P +++ +KQ + DV ++ R
Sbjct: 499 GAEVLKSNSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPRSKG 558
Query: 599 PLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEVS 633
V + TLE+ + A+ L + T + ++S
Sbjct: 559 VSVRKITLELAVEKDALGSLYGRDGTGVDNLQQIS 593
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 357 DKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEE 401
D +G + G V+ LQ G ++ V DP G++ ++ + E
Sbjct: 573 DALGSLYGRDGTGVDNLQQISGANVDVKDPT-GTEATVLISGNPE 616
Score = 41 (19.5 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 79 TTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEI 128
T R++CH R+ TG I+ + G + ++ I
Sbjct: 25 TAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFI 74
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 241 (89.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 54/174 (31%), Positives = 97/174 (55%)
Query: 342 PFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEE 401
P + + VFRML P KVG +IG +++ + E +K+ D G+ E+ + +S +E
Sbjct: 181 PGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKE 240
Query: 402 GPDDELFPAQEALLHIQTRIVDLGADKD-------NIITTRLLVPSSEIGCLEGRDG-SL 453
P+ L P+ + LL + RIVD G D + + ++TRLLVP+S+ G L G+ G ++
Sbjct: 241 EPESSLPPSMDGLLRVHMRIVD-GLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTV 299
Query: 454 SEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507
++ ++ +++L E++P D +V++VGE + AL + + LR +L
Sbjct: 300 KAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFL 353
Score = 117 (46.2 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 35/132 (26%), Positives = 64/132 (48%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVG 249
++V+TR++V G L+GK G ++ ++ + +R+L + LP + +V+VVG
Sbjct: 275 SKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSE-DLPVFALQDDRVVEVVG 333
Query: 250 DINNVKNAVAIISSRLRESQHRDRS---HFHGRLHSPDRFFPDDDYVPHMNNTARRPSMD 306
+ +V A+ +I+S LR+ DRS F ++ P R D++P + + P
Sbjct: 334 EPTSVHRALELIASHLRKFLV-DRSIIPFFENQMQKPTRQM---DHMPPPHQSWGPPQGH 389
Query: 307 GARFSGSNYRSN 318
G Y N
Sbjct: 390 APSVGGGGYGHN 401
Score = 61 (26.5 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPAC----VSGTDELVQIV 486
+T ++ +P S + G GS +S RR +GA + I VP VSGT VQ
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTA 517
Query: 487 GEIQAARDALVE 498
+Q ++ + E
Sbjct: 518 --VQLIQNFMAE 527
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 529 VVEAASPIDITP---AREVQTVTDPPAATHQSVQIPATSQP 566
+ EA +P P A E Q P ATH SV A + P
Sbjct: 525 MAEAGAPAPAQPQTVAPEQQGYN--PYATHGSVYAAAPTNP 563
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 209 (78.6 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 57/176 (32%), Positives = 94/176 (53%)
Query: 342 PFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVAD-PVDGSDEQIITISSE 400
P + D VFRM+ P+ KVG +IG ++ + E +KV D PV+ D +I+ IS +
Sbjct: 68 PGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPD-RIVLISGK 126
Query: 401 EGPDDELFPAQEALLHIQTRIVDLGADKDNII--------TTRLLVPSSEIGCLEGRDGS 452
E P+ + PA +A+L + R+ L + D+ + + RLLV S++ L G+ GS
Sbjct: 127 EEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGS 186
Query: 453 L-SEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507
L + ++GA+++ILS EE P + + +V + GE AL + LR +L
Sbjct: 187 LIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFL 242
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 112 INVHELIPGDEERIIEI---SDTRRRDPEGRMPSFSPAQEALFLIHDRILESDXXXXXXX 168
+ V+E +PG +ER++ I S+ R R + PA +ALF +HD ++ +
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 169 XXXXXXXXXXXXXXXXXXXXXNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRIL 228
V RM+V +G L+GKGG II+ +R +T QIR+
Sbjct: 61 NDNDEYSEGQTV-----------VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV- 108
Query: 229 PRDHSLPRC-VSMS-EEIVQVVGDINNVKNAVAIISSRLRESQHR 271
R+ +LP C +++S +E++Q++GD + V+ A+ ++ L + R
Sbjct: 109 -RNDNLPMCALALSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 42/138 (30%), Positives = 70/138 (50%)
Query: 378 GVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIV--DLGADKD------ 429
G D +V S+E+ E+ +D + PA +AL + +V + D D
Sbjct: 9 GCDERVVTIYSNSEERN---RIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYNDNDE 65
Query: 430 -----NIITTRLLVPSSEIGCLEGRDGSLSE-MRRSTGANIQILSREEVPACVSGT--DE 481
++T R+LVPS +IG L G+ G + + +R T A I++ + + +P C DE
Sbjct: 66 YSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN-DNLPMCALALSHDE 124
Query: 482 LVQIVGEIQAARDALVEV 499
L+QI+G+ A R+AL +V
Sbjct: 125 LLQIIGDPSAVREALYQV 142
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 155 (59.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 70/302 (23%), Positives = 134/302 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIIS 262
VG L+GK G+ ++++ +T T+I I P + E + V G NA I
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLT---IYNPERTITVKGSTEACSNAEVEIM 315
Query: 263 SRLRESQHRDRSHFHGRLHSPDRFFPDDDYVP---HMNNTARRPSMDGARFSGSNYRSNN 319
+LRE+ D ++ P + + PS GAR + + +
Sbjct: 316 KKLREAYENDIV----AVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGAAAAAPYHP 371
Query: 320 YGPRPSGYSIEAGAAPMS--DSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEI 377
+ + S GA+P+ P +++V + P VG +IG+ ++ L
Sbjct: 372 FASSSAYLSGLYGASPVGAFPHQHPLPEQEVV-NLFIPTQAVGAIIGKKGQHIKQLARFA 430
Query: 378 GVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITT 434
G +K+A P +G D E+++ I+ GP + F AQ + + + + K+ + +
Sbjct: 431 GASIKIA-PAEGPDATERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKEEVKLEA 485
Query: 435 RLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAAR 493
+ VPS G + G+ G +++E++ T A + I+ R++ P + +V+I+G A++
Sbjct: 486 HIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVKIIGHFFASQ 542
Query: 494 DA 495
A
Sbjct: 543 TA 544
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 323 RPSGY-SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGI-VELL--QNEIG 378
R G+ S E G++P S QP D RML P VG +IG+ EG+ ++ L Q +
Sbjct: 143 RRGGHASREQGSSPGGSS-QPKQ-LDFPLRMLVPTQFVGAIIGK-EGLTIKNLTKQTQSK 199
Query: 379 VDLKVADPVDGSDEQIITI-SSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLL 437
VD+ + G+ E+ ITI ++ EG + A +L I + D + I ++L
Sbjct: 200 VDIHRKENA-GAAEKPITIHATPEGCSE----ACRMILDIMQKEADETKSAEEI-PLKIL 253
Query: 438 VPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDAL 496
+S +G L G++G +L ++ + TG I I +++ + + + + G +A +A
Sbjct: 254 AHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPERTITVKGSTEACSNAE 311
Query: 497 VEVTTRLRSYLYRD 510
VE+ +LR D
Sbjct: 312 VEIMKKLREAYEND 325
Score = 59 (25.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
RM+V VG ++GK G I+ + +T++++ I ++++
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENA 208
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 133 (51.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 47/182 (25%), Positives = 87/182 (47%)
Query: 317 SNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
SN P PS S GAAP S + P E + P VG +IG+ ++ L
Sbjct: 380 SNAVPPPPSSVS---GAAPYSSFMPP---EQETVHVFIPAQAVGAIIGKKGQHIKQLSRF 433
Query: 377 IGVDLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITT 434
+K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T
Sbjct: 434 ASASIKIAPPETPDSKVRMVVIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLET 489
Query: 435 RLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAAR 493
+ VP+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++
Sbjct: 490 HIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENEQVIVKIIGHFYASQ 546
Query: 494 DA 495
A
Sbjct: 547 MA 548
Score = 74 (31.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GSIENCCKAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 148 (57.2 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 77/308 (25%), Positives = 136/308 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 218 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEVEI 273
Query: 262 SSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTARRPSMDGARFSG 312
+LRE+ D + + + S F V P P+ F+
Sbjct: 274 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPYHPFAT 333
Query: 313 -SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVE 371
S Y S+ Y P + G P S Y E + + P VG +IG+ ++
Sbjct: 334 HSGYFSSLYPPH------QFGPFPHHHS----YPEQEIVNLFIPTQAVGAIIGKKGAHIK 383
Query: 372 LLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L G +K+A P +G D E+++ I+ GP + F AQ + + + + K+
Sbjct: 384 QLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKE 438
Query: 430 NI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ + + VPSS G + G+ G +++E++ T A + I+ R++ P + +V+I+G
Sbjct: 439 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVRIIG 495
Query: 488 EIQAARDA 495
A++ A
Sbjct: 496 HFFASQTA 503
Score = 57 (25.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 129 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 167
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 147 (56.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 77/308 (25%), Positives = 136/308 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 185 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEIEI 240
Query: 262 SSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTARRPSMDGARFSG 312
+LRE+ D + + + S F V P P+ F+
Sbjct: 241 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPYHPFAT 300
Query: 313 -SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVE 371
S Y S+ Y P + G P S Y E + + P VG +IG+ ++
Sbjct: 301 HSGYFSSLYPPH------QFGPFPHHHS----YPEQEIVNLFIPTQAVGAIIGKKGAHIK 350
Query: 372 LLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L G +K+A P +G D E+++ I+ GP + F AQ + + + + K+
Sbjct: 351 QLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKE 405
Query: 430 NI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ + + VPSS G + G+ G +++E++ T A + I+ R++ P + +V+I+G
Sbjct: 406 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVRIIG 462
Query: 488 EIQAARDA 495
A++ A
Sbjct: 463 HFFASQTA 470
Score = 57 (25.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 96 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 134
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 147 (56.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 77/308 (25%), Positives = 136/308 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEIEI 262
Query: 262 SSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTARRPSMDGARFSG 312
+LRE+ D + + + S F V P P+ F+
Sbjct: 263 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPYHPFAT 322
Query: 313 -SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVE 371
S Y S+ Y P + G P S Y E + + P VG +IG+ ++
Sbjct: 323 HSGYFSSLYPPH------QFGPFPHHHS----YPEQEIVNLFIPTQAVGAIIGKKGAHIK 372
Query: 372 LLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L G +K+A P +G D E+++ I+ GP + F AQ + + + + K+
Sbjct: 373 QLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKE 427
Query: 430 NI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ + + VPSS G + G+ G +++E++ T A + I+ R++ P + +V+I+G
Sbjct: 428 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVRIIG 484
Query: 488 EIQAARDA 495
A++ A
Sbjct: 485 HFFASQTA 492
Score = 57 (25.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 156
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 147 (56.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 77/308 (25%), Positives = 136/308 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 211 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEIEI 266
Query: 262 SSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTARRPSMDGARFSG 312
+LRE+ D + + + S F V P P+ F+
Sbjct: 267 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPYHPFAT 326
Query: 313 -SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVE 371
S Y S+ Y P + G P S Y E + + P VG +IG+ ++
Sbjct: 327 HSGYFSSLYPPH------QFGPFPHHHS----YPEQEIVNLFIPTQAVGAIIGKKGAHIK 376
Query: 372 LLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L G +K+A P +G D E+++ I+ GP + F AQ + + + + K+
Sbjct: 377 QLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKE 431
Query: 430 NI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ + + VPSS G + G+ G +++E++ T A + I+ R++ P + +V+I+G
Sbjct: 432 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVRIIG 488
Query: 488 EIQAARDA 495
A++ A
Sbjct: 489 HFFASQTA 496
Score = 57 (25.1 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 122 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 160
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 158 (60.7 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 65/242 (26%), Positives = 110/242 (45%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISSEEGPDDE 406
L R++ +VG +IG+ IV + E G + ++D GS E+I+T+S G +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD---GSCPERIVTVS---GTTNA 77
Query: 407 LFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQ 465
+F A + D+G I RL+VP+S+ G L G+ GS + E+R++TG +IQ
Sbjct: 78 IFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQ 137
Query: 466 ILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETP-PSSTGPT 524
+ S E +P + T+ V + G + + ++ + R P P TGP
Sbjct: 138 VAS-EMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPV 193
Query: 525 GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESE 584
L A I A Q V P A+ ++ + A P+ + G ++ T + + S
Sbjct: 194 --ILANGQAFTIQGNYAVPTQEVAKNPLASLAALGL-AGMNPA--STGGINHTGELSASA 248
Query: 585 RR 586
R
Sbjct: 249 AR 250
Score = 84 (34.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+I+ + R E+ +I I D S P E IV V G N +
Sbjct: 27 RLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCP------ERIVTVSGTTNAI 78
Query: 255 KNAVAIISSRLRE 267
+A +I+ + E
Sbjct: 79 FSAFTLITKKFEE 91
Score = 82 (33.9 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVG--EIQAA 492
+ V + IGC+ G+ G+ ++E+R+ +GA I+I + EE TD + I G + A
Sbjct: 290 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREG--GNTDRTITISGNPDSVAL 347
Query: 493 RDALVEVTTRL-RSYLYRDFFQKETPPSSTGP----TGSALVVEAASPIDITPAREVQTV 547
L+ ++ L ++ L ++ ++ P G A V AA+P T + TV
Sbjct: 348 AQYLINMSVELQKANLLEQAQSQQNGGAAAAPGAAAAGVAAVTGAAAPTSATNGA-ITTV 406
Query: 548 T 548
T
Sbjct: 407 T 407
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 128 (50.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 40/156 (25%), Positives = 79/156 (50%)
Query: 344 YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEE 401
Y E + + P VG +IG+ ++ L G +K+A P +G D E+++ I+
Sbjct: 302 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT--- 357
Query: 402 GPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRS 459
GP + F AQ + + + + K+ + + + VPSS G + G+ G +++E++
Sbjct: 358 GPPEAQFKAQGRIFG-KLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNL 416
Query: 460 TGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
T A + I+ R++ P + +V+I+G A++ A
Sbjct: 417 TSAEV-IVPRDQTPD--ENEEVIVRIIGHFFASQTA 449
Score = 75 (31.5 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEIEI 262
Query: 262 SSRLRESQHRD----RSH--FHGRLHSPDRFFP 288
+LRE+ D +H + L+ P +F P
Sbjct: 263 MKKLREAFENDMLAVNTHSGYFSSLYPPHQFGP 295
Score = 57 (25.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 156
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 147 (56.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 77/308 (25%), Positives = 136/308 (44%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + NA I
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACANAEIEI 341
Query: 262 SSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTARRPSMDGARFSG 312
+LRE+ D + + + S F V P P+ F+
Sbjct: 342 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPYHPFAT 401
Query: 313 -SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVE 371
S Y S+ Y P + G P S Y E + + P VG +IG+ ++
Sbjct: 402 HSGYFSSLYPPH------QFGPFPHHHS----YPEQEIVNLFIPTQAVGAIIGKKGAHIK 451
Query: 372 LLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKD 429
L G +K+A P +G D E+++ I+ GP + F AQ + + + + K+
Sbjct: 452 QLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKE 506
Query: 430 NI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ + + VPSS G + G+ G +++E++ T A + I+ R++ P + +V+I+G
Sbjct: 507 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVRIIG 563
Query: 488 EIQAARDA 495
A++ A
Sbjct: 564 HFFASQTA 571
Score = 57 (25.1 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 235
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 41/146 (28%), Positives = 76/146 (52%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVG 487
A +Q+ + +P + T+ + I G
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAG 150
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 47/154 (30%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 70
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + EMR STG
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 462 ANIQIL-----SREEVPACVSGTDE-LVQIVGEI 489
A +Q+ + E +SGT E ++Q V +I
Sbjct: 131 AQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQI 164
Score = 86 (35.3 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I++MR T Q+++ LP +S R V++S E I
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLP--NSTERAVTISGTPEAI 157
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 158 IQCVKQI 164
Score = 77 (32.2 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
T L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME 307
Score = 70 (29.7 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 335 PMSDSVQPFYGEDL-----VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDG 389
P+ + F G D + P D +G +IG + ++ G +K+A+ ++G
Sbjct: 249 PLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEG 308
Query: 390 SDEQIITIS 398
S E+ ITI+
Sbjct: 309 SSERQITIT 317
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 12 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 64
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 124 (48.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 49/202 (24%), Positives = 94/202 (46%)
Query: 328 SIEAGAAPMSDSVQPFYG---EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVA 384
S+ +G P + + +G E + P VG +IG+ ++ L G +K+A
Sbjct: 386 SVVSGPPPGAQAGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIA 445
Query: 385 DPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSE 442
P DG D ++++ IS GP + F AQ + G ++ + + VPS
Sbjct: 446 -PADGIDAKQRMVIIS---GPPEAQFKAQGRIFGKLKEENFFGPKEEVKLEAHIKVPSFA 501
Query: 443 IGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTT 501
G + G+ G +++E++ T A + ++ R++ P +V+I G A++ A ++
Sbjct: 502 AGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDQVVVKITGHFYASQLAQRKIQ- 557
Query: 502 RLRSYLYRDFFQKETPPSSTGP 523
+ S + R Q++ PS+ GP
Sbjct: 558 EIISQVRR---QQQPKPSAAGP 576
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
+ +++ VG L+GK G+ ++++ +T T+I I P +D +L E + V G
Sbjct: 276 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN----PERTITVKGT 331
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARF 310
++ A I ++RES D + H L S + +P +N A GA
Sbjct: 332 LDACAKAEEEIMKKVRESYENDVAAMH--LQS--------NLIPGLNLNALG-LFPGAA- 379
Query: 311 SGSNYRSNNYGPRP---SGYSIEAGAAPMSDSVQPF 343
SG S GP P +GY GA S++V F
Sbjct: 380 SGGISPSVVSGPPPGAQAGYQ-SFGAQMESETVHLF 414
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
V R++V VG ++GK G I + +T ++I I ++++
Sbjct: 195 VPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENA 236
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 50/157 (31%), Positives = 85/157 (54%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISSEEGPDDE 406
L R+L +VG +IG+ V+ ++ E G + +++ GS E+I+TI+ GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTIT---GPTDA 67
Query: 407 LFPAQEALLHIQTRIVDLGADKDNI-------ITTRLLVPSSEIGCLEGRDGS-LSEMRR 458
+F A +++ ++ D+ A N +T RL+VP+S+ G L G+ GS + E+R
Sbjct: 68 IFKAF-SMIALKFE-EDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 459 STGANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
STGA +Q+ + E +SGT D ++Q V +I
Sbjct: 126 STGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
Score = 79 (32.9 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 155
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 156 IQCVKQI 162
Score = 78 (32.5 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
L +P+ IGC+ GR GS ++E+R+ +GA I+I + E
Sbjct: 246 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE 282
Score = 68 (29.0 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 338 DSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI 397
D+ P +L P D +G +IG + ++ G +K+A+ +GS E+ +TI
Sbjct: 236 DATSPTSSHELTI----PNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTI 291
Query: 398 S 398
+
Sbjct: 292 T 292
Score = 52 (23.4 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G ERI+ I+
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTIT 62
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 50/157 (31%), Positives = 85/157 (54%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISSEEGPDDE 406
L R+L +VG +IG+ V+ ++ E G + +++ GS E+I+TI+ GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTIT---GPTDA 67
Query: 407 LFPAQEALLHIQTRIVDLGADKDNI-------ITTRLLVPSSEIGCLEGRDGS-LSEMRR 458
+F A +++ ++ D+ A N +T RL+VP+S+ G L G+ GS + E+R
Sbjct: 68 IFKAF-SMIALKFE-EDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 459 STGANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
STGA +Q+ + E +SGT D ++Q V +I
Sbjct: 126 STGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 68
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 129 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
Score = 79 (32.9 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 155
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 156 IQCVKQI 162
Score = 78 (32.5 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
T L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 243 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE 282
Score = 68 (29.0 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 249 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 292
Score = 53 (23.7 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 62
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 50/157 (31%), Positives = 85/157 (54%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISSEEGPDDE 406
L R+L +VG +IG+ V+ ++ E G + +++ GS E+I+TI+ GP D
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTIT---GPTDA 66
Query: 407 LFPAQEALLHIQTRIVDLGADKDNI-------ITTRLLVPSSEIGCLEGRDGS-LSEMRR 458
+F A +++ ++ D+ A N +T RL+VP+S+ G L G+ GS + E+R
Sbjct: 67 IFKAF-SMIALKFE-EDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 124
Query: 459 STGANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
STGA +Q+ + E +SGT D ++Q V +I
Sbjct: 125 STGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 161
Score = 79 (32.9 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 424 LGADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
+G D + ++ L +P+ IGC+ GR GS ++E+R+ +GA I+I + E
Sbjct: 271 IGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE 320
Score = 79 (32.9 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 154
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 155 IQCVKQI 161
Score = 71 (30.1 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 338 DSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI 397
D+ P +L P D +G +IG + ++ G +K+A+ +GS E+ +TI
Sbjct: 274 DATSPTSSHELTI----PNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTI 329
Query: 398 SSEEGPDDELFPAQEAL-LHIQTRIVDLGA 426
+ G + AQ + + + + LGA
Sbjct: 330 T---GSPANISLAQYLINARLSSEVTGLGA 356
Score = 52 (23.4 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G ERI+ I+
Sbjct: 9 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIVTIT 61
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 323 RPSGY-SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGI-VELL--QNEIG 378
R G+ S E G++P S QP D RML P VG +IG+ EG+ ++ L Q +
Sbjct: 143 RRGGHASREQGSSPGGSS-QPKQ-LDFPLRMLVPTQFVGAIIGK-EGLTIKNLTKQTQSK 199
Query: 379 VDLKVADPVDGSDEQIITI-SSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLL 437
VD+ + G+ E+ ITI ++ EG + A +L I + D + I ++L
Sbjct: 200 VDIHRKENA-GAAEKPITIHATPEGCSE----ACRMILDIMQKEADETKSAEEI-PLKIL 253
Query: 438 VPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDAL 496
+S +G L G++G +L ++ + TG I I +++ + + + + G +A +A
Sbjct: 254 AHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPERTITVKGSTEACSNAE 311
Query: 497 VEVTTRLRSYLYRD 510
VE+ +LR D
Sbjct: 312 VEIMKKLREAYEND 325
Score = 125 (49.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 46/178 (25%), Positives = 85/178 (47%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P +G A AAP Q E V + P VG +IG+ ++ L G +
Sbjct: 355 PSSAGARGAAAAAPYHPFAQ--LPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASI 412
Query: 382 KVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLV 438
K+A P +G D E+++ I+ GP + F AQ + + + + K+ + + + V
Sbjct: 413 KIA-PAEGPDATERMVIIT---GPPEAQFKAQGRIFG-KLKEENFFNPKEEVKLEAHIKV 467
Query: 439 PSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
PS G + G+ G +++E++ T A + I+ R++ P + +V+I+G A++ A
Sbjct: 468 PSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVIVKIIGHFFASQTA 522
Score = 74 (31.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIIS 262
VG L+GK G+ ++++ +T T+I I P + E + V G NA I
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLT---IYNPERTITVKGSTEACSNAEVEIM 315
Query: 263 SRLRESQHRD 272
+LRE+ D
Sbjct: 316 KKLREAYEND 325
Score = 59 (25.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
RM+V VG ++GK G I+ + +T++++ I ++++
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENA 208
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 148 (57.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194
Score = 79 (32.9 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 188 IQCVKQI 194
Score = 78 (32.5 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
T L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 294 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE 333
Score = 68 (29.0 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 300 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
Score = 53 (23.7 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 94
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 147 (56.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 47/154 (30%), Positives = 81/154 (52%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E + V++ E+I+TI+ GP D +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE--GNCPERIVTIT---GPTDAI 70
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + EMR STG
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 462 ANIQIL-----SREEVPACVSGTDE-LVQIVGEI 489
A +Q+ + E +SGT E ++Q V +I
Sbjct: 131 AQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQI 164
Score = 86 (35.3 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I++MR T Q+++ LP +S R V++S E I
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLP--NSTERAVTISGTPEAI 157
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 158 IQCVKQI 164
Score = 84 (34.6 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D + +T L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E +D
Sbjct: 259 GVDASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME-----GSSDRQ 313
Query: 483 VQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSS 520
+ I G A +L + R +RD T PS+
Sbjct: 314 ITITGT--PANISLAQYLINAR---FRDVAAMWTDPST 346
Score = 66 (28.3 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ ++GS ++ ITI+
Sbjct: 274 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITIT 317
Score = 48 (22.0 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ + A INV E G+ ERI+ I+
Sbjct: 12 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE---GNCPERIVTIT 64
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 140 (54.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 76/313 (24%), Positives = 143/313 (45%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + +A I
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACASAEIEI 341
Query: 262 SSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYG 321
+LRE+ D + + + +P +N +A G +G + S G
Sbjct: 342 MKKLREAFENDMLAVNQQAN----------LIPGLNLSAL-----GIFSTGLSVLSPPAG 386
Query: 322 PR---PSG----YSIEAGA-APMSDSVQ--PF-----YGEDLVFRMLCPIDKVGRVIGES 366
PR P+ ++ +G + + Q PF Y E + + P VG +IG+
Sbjct: 387 PRGAPPAAPYHPFTTHSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 446
Query: 367 EGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDL 424
++ L G +K+A P +G D E+++ I+ GP + F AQ + + + +
Sbjct: 447 GAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENF 501
Query: 425 GADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDEL 482
K+ + + + VPSS G + G+ G +++E++ T A + I+ R++ P + +
Sbjct: 502 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVI 558
Query: 483 VQIVGEIQAARDA 495
V+I+G A++ A
Sbjct: 559 VRIIGHFFASQTA 571
Score = 57 (25.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 235
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 140 (54.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 76/313 (24%), Positives = 143/313 (45%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + +A I
Sbjct: 292 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACASAEIEI 347
Query: 262 SSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYG 321
+LRE+ D + + + +P +N +A G +G + S G
Sbjct: 348 MKKLREAFENDMLAVNQQAN----------LIPGLNLSAL-----GIFSTGLSVLSPPAG 392
Query: 322 PR---PSG----YSIEAGA-APMSDSVQ--PF-----YGEDLVFRMLCPIDKVGRVIGES 366
PR P+ ++ +G + + Q PF Y E + + P VG +IG+
Sbjct: 393 PRGAPPAAPYHPFTTHSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 452
Query: 367 EGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQTRIVDL 424
++ L G +K+A P +G D E+++ I+ GP + F AQ + + + +
Sbjct: 453 GAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-KLKEENF 507
Query: 425 GADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDEL 482
K+ + + + VPSS G + G+ G +++E++ T A + I+ R++ P + +
Sbjct: 508 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD--ENEEVI 564
Query: 483 VQIVGEIQAARDA 495
V+I+G A++ A
Sbjct: 565 VRIIGHFFASQTA 577
Score = 57 (25.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 241
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 125 (49.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP S +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVVIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 150 (57.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 94/416 (22%), Positives = 167/416 (40%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMS-EEIVQVV 248
+ + +++ +G ++GK G I+++ +T T+I + S+ S + E I+ V
Sbjct: 178 SEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITV----SSINDINSFNLERIITVK 233
Query: 249 GDINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGA 308
G I N+ A IS++LR+S D L + P P ++ A +
Sbjct: 234 GLIENMSRAENQISTKLRQSYEND-------LQA---MAPQSLMFPGLHPMAMMST---- 279
Query: 309 RFSGSNYRSNNYGPRPSGYSIEAGAAPMS--DSVQPFYGEDLVFRMLCPIDKVGRVIGES 366
G+ N P PS S P S V P ++ + + P + VG +IG
Sbjct: 280 --PGNGMVFNTSMPFPSCQSFAMSKTPASVVPPVFPNDLQETTY-LYIPNNAVGAIIGTR 336
Query: 367 EGIVELLQNEIGVDLKVAD-----PVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRI 421
+ + LK+A P+D E+ +TI P+ + + AQ + + R
Sbjct: 337 GSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGT--PEGQ-WKAQYMIFE-KMRE 392
Query: 422 VDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGT 479
D++ +T LLV SS++G + G+ G ++ E++R TG+ I++ P SG
Sbjct: 393 EGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPP--SGG 450
Query: 480 DEL--VQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASP-- 535
DE V I+G + + A + + S +K+ + AAS
Sbjct: 451 DEETPVHIIGLFYSVQSAQRRIRAMMLSTNPPPITKKQKAAKEQLQQQQQSLAGAASSGS 510
Query: 536 IDITPAREVQTVTDPPAATHQSVQIPATSQ-PSKEAAGSVSETVKQNESERREDVP 590
P Q PP HQ V ++S P S ++ ++++ P
Sbjct: 511 QQQQPQSPSQQQALPPQLHHQPVSSASSSSTPPAHHQQQASTAATSHQLQQQQPSP 566
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 148 (57.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 76
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 77 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 136
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 137 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 170
Score = 85 (35.0 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 209 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 268
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 269 EIRQMSGAQIKIANATE 285
Score = 79 (32.9 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 163
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 164 IQCVKQI 170
Score = 68 (29.0 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 252 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 295
Score = 53 (23.7 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 18 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 70
Score = 38 (18.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 202 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 252
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 120 (47.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 47/199 (23%), Positives = 94/199 (47%)
Query: 315 YRSNNYGPRPSGYSIEAGAAPMSDSVQPFYG---EDLVFRMLCPIDKVGRVIGESEGIVE 371
+ S++ G P + + P S + P +G E + P VG +IG+ ++
Sbjct: 386 FPSSSSGMPPPSVGVPS---PTSSTSYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIK 442
Query: 372 LLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI 431
L G +K+A P +G D ++ + GP + F AQ ++ + + + K+ +
Sbjct: 443 QLSRFAGASIKIA-PAEGPDAKLRMVIIT-GPPEAQFKAQ-GRIYGKLKEENFFGPKEEV 499
Query: 432 -ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELV-QIVGE 488
+ T + VPS G + G+ G +++E++ T A + ++ R++ P DE+V +I G
Sbjct: 500 KLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDEVVVKITGH 555
Query: 489 I---QAARDALVEVTTRLR 504
Q A+ + E+ ++R
Sbjct: 556 FYASQLAQRKIQEILAQVR 574
Score = 77 (32.2 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
+ +++ VG L+GK G+ ++++ +T T+I I P +D +L E + V G
Sbjct: 287 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN----PERTITVKGS 342
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
I A I ++RES D + + + H
Sbjct: 343 IEPCAKAEEEIMKKIRESYENDIAAMNLQAH 373
Score = 61 (26.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
V RM+V VG ++GK G I + +T+++I I ++++
Sbjct: 206 VPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA 247
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 124 (48.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP S +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVIIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 124 (48.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP S +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVIIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 124 (48.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP S +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVIIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 124 (48.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP S +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVIIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 135 (52.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 148 (57.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 68
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 129 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
Score = 85 (35.0 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 248 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 307
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 308 EIRQMSGAQIKIANATE 324
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 155
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 156 IQCVKQI 162
Score = 68 (29.0 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 291 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
Score = 53 (23.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 62
Score = 38 (18.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 241 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 291
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 148 (57.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 68
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 129 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
Score = 85 (35.0 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 248 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 307
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 308 EIRQMSGAQIKIANATE 324
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 155
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 156 IQCVKQI 162
Score = 68 (29.0 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 291 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
Score = 53 (23.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 62
Score = 38 (18.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 241 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 291
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 148 (57.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194
Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 258 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 318 EIRQMSGAQIKIANATE 334
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 188 IQCVKQI 194
Score = 68 (29.0 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 94
Score = 38 (18.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 251 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 301
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 148 (57.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194
Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 258 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 318 EIRQMSGAQIKIANATE 334
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 188 IQCVKQI 194
Score = 68 (29.0 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 94
Score = 38 (18.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 251 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 301
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 148 (57.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194
Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 258 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 318 EIRQMSGAQIKIANATE 334
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 188 IQCVKQI 194
Score = 68 (29.0 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 94
Score = 38 (18.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 251 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 301
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 148 (57.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 46/154 (29%), Positives = 82/154 (53%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-IQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + + I++ ++ +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 194
Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G + FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 258 GQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 318 EIRQMSGAQIKIANATE 334
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 187
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 188 IQCVKQI 194
Score = 68 (29.0 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTIT 94
Score = 38 (18.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 513 QKETPP-SSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
Q PP T P G L + ++ + PPA+TH+ + IP
Sbjct: 251 QTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 301
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 121 (47.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 43/177 (24%), Positives = 86/177 (48%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL 381
P PS + GAAP +Q E + ++ P VG +IG+ ++ L +
Sbjct: 385 PPPSSVT---GAAPYGSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 439
Query: 382 KVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVP 439
K+A P S +++ I+ GP + F AQ ++ + + + K+ + + T + VP
Sbjct: 440 KIAPPETPDSKVRMVVIT---GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLETHIRVP 495
Query: 440 SSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A++ A
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENDQVIVKIIGHFYASQMA 549
Score = 72 (30.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T+T+I I +D +L E + V
Sbjct: 275 DEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVK 330
Query: 249 GDINNVKNAVAIISSRLRESQHRD 272
G I N A I ++RE+ D
Sbjct: 331 GAIENCCRAEQEIMKKVREAYEND 354
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ R++V +VG ++GK G I + +T+++I + ++++
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 128 (50.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 40/156 (25%), Positives = 79/156 (50%)
Query: 344 YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEE 401
Y E + + P VG +IG+ ++ L G +K+A P +G D E+++ I+
Sbjct: 381 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT--- 436
Query: 402 GPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRS 459
GP + F AQ + + + + K+ + + + VPSS G + G+ G +++E++
Sbjct: 437 GPPEAQFKAQGRIFG-KLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNL 495
Query: 460 TGANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
T A + I+ R++ P + +V+I+G A++ A
Sbjct: 496 TSAEV-IVPRDQTPD--ENEEVIVRIIGHFFASQTA 528
Score = 64 (27.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ ET T+I I +D S+ E + V G + +A I
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGTVEACASAEIEI 341
Query: 262 SSRLRESQHRD 272
+LRE+ D
Sbjct: 342 MKKLREAFEND 352
Score = 57 (25.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I +++S
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENS 235
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 109 (43.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/131 (27%), Positives = 64/131 (48%)
Query: 284 DRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPF 343
DRF Y +M++ RP+ R G Y S + G + S E + S
Sbjct: 297 DRF-SHQSYHSNMDD---RPNDRRGR-PGDRYESMSGGGYDNNSSWEPFQSGGRGSYSDI 351
Query: 344 YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGP 403
G + ++ P D G +IG+ ++ +++E G +K+ +P++GS+++IITI+ G
Sbjct: 352 GGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITIT---GT 408
Query: 404 DDELFPAQEAL 414
D++ AQ L
Sbjct: 409 QDQIQNAQYLL 419
Score = 81 (33.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+++ + G ++GKGGK I+ +R + + + P D S P E I+ V DI
Sbjct: 44 VELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGP------ERILSVSADI 95
Query: 252 NNVKNAVAIISSRLRESQHRDRSHF 276
+ + + I L E QH + F
Sbjct: 96 DTIGEILLKIIPTLEEYQHYSGTDF 120
Score = 60 (26.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V V G V
Sbjct: 125 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLVGGKPERV 179
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ +I + E+ + R+
Sbjct: 180 VECIKVILELIAEAPIKGRA 199
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 113 (44.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 45/191 (23%), Positives = 88/191 (46%)
Query: 321 GPRPSGYSIEAGAAPMSDSVQPF--YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIG 378
G P S+ + AA + S PF E + P VG +IG+ ++ L G
Sbjct: 383 GIPPPAVSVASAAA--AASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAG 440
Query: 379 VDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLL 437
+K+A P +G D ++ + GP + F AQ ++ + + + K+ + + +
Sbjct: 441 ASIKIA-PAEGPDAKLRMVIIT-GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLEAHIK 497
Query: 438 VPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEI---QAAR 493
VPS G + G+ G +++E++ T A + ++ R++ P +V+I G Q A+
Sbjct: 498 VPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDQVVVKITGHFYACQLAQ 554
Query: 494 DALVEVTTRLR 504
+ E+ ++R
Sbjct: 555 RKIQEILAQVR 565
Score = 79 (32.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
+ +++ VG L+GK G+ ++++ +T T+I I P +D +L E + V G
Sbjct: 278 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN----PERTITVKGS 333
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
I A I ++RES D + + + H
Sbjct: 334 IETCAKAEEEIMKKIRESYENDIAAMNLQAH 364
Score = 61 (26.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
V RM+V VG ++GK G I + +T+++I I ++++
Sbjct: 197 VPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA 238
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 47/188 (25%), Positives = 93/188 (49%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 109 (43.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 50/212 (23%), Positives = 95/212 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMSEEIVQV 247
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ I Q
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAG-IPQS 154
Query: 248 VGDINNVKNAVAIISSRLRESQHRDRS-HFHGRLHSPDRFFPDDDYVPHMNNTARRPSMD 306
+ I VK ++ L +S + + + + S F + ++ A M
Sbjct: 155 I--IECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQ-LTKLHQLA----MQ 207
Query: 307 GARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGES 366
+ F ++ + G S ++ A + S Q E + P D +G +IG
Sbjct: 208 QSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHE-----LTIPNDLIGCIIGRQ 262
Query: 367 EGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
+ ++ G +K+A+PV+GS ++ +TI+
Sbjct: 263 GAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 294
Score = 85 (35.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 236 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 290
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 291 VTITGSAASISLAQYLINVRLSS 313
Score = 76 (31.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 52 (23.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 47/188 (25%), Positives = 93/188 (49%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 85 (35.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 237 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 291
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 292 VTITGSAASISLAQYLINVRLSS 314
Score = 76 (31.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 112 (44.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 45/195 (23%), Positives = 91/195 (46%)
Query: 320 YGPRPSGYSI-EAG-AAPMSDSVQPFYG---EDLVFRMLCPIDKVGRVIGESEGIVELLQ 374
+ P SG AG ++P + + P +G E + P VG +IG+ ++ L
Sbjct: 385 FPPSSSGMPPPSAGVSSPTTSASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLS 444
Query: 375 NEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-IT 433
G +K+A P +G D ++ + GP + F AQ ++ + + + K+ + +
Sbjct: 445 RFAGASIKIA-PAEGPDAKLRMVIIT-GPPEAQFKAQ-GRIYGKLKEENFFGPKEEVKLE 501
Query: 434 TRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEI--- 489
+ VPS G + G+ G +++E++ T A + ++ R++ P +V+I G
Sbjct: 502 AHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDQVVVKITGHFYAS 558
Query: 490 QAARDALVEVTTRLR 504
Q A+ + E+ ++R
Sbjct: 559 QLAQRKIQEILAQVR 573
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
+ +++ VG L+GK G+ ++++ +T T+I I P +D +L E + V G
Sbjct: 286 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN----PERTITVKGS 341
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
I A + ++RES D + + + H
Sbjct: 342 IETCAKAEEEVMKKIRESYENDIAAMNLQAH 372
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
+ V RM+V VG ++GK G I + +T+++I I ++++
Sbjct: 203 SEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENA 246
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 112 (44.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 35/137 (25%), Positives = 60/137 (43%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+VV G ++GKGG I+ E+K I+I P D++ +S+ +V + G
Sbjct: 124 RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTF---YGLSDRLVTLSGTFEEQ 180
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSN 314
A+ +I ++L E H ++ H F+ P+ PS+ A ++ N
Sbjct: 181 MRAIDLILAKLTEDDHYSQN-VHSPYSYAGLFYSGFHGPPY---AYALPSVATAGYNSVN 236
Query: 315 YRSNNYGPRPSGYSIEA 331
Y N G + + EA
Sbjct: 237 YAPNGSGGKYQNHKEEA 253
Score = 71 (30.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 428 KDNIITTRLL-VPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGT-DELVQ 484
K+ TT + V IG + GR G ++ E+ + TGA I+I R + +SGT D V
Sbjct: 250 KEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDF---MSGTTDRKVS 306
Query: 485 IVGEIQAARDALVEVTTRLRS 505
I G +A + A + ++ S
Sbjct: 307 ITGPQRAIQQAETMIKQKVDS 327
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 116 ELIPGDEERIIEIS 129
E PG +RII IS
Sbjct: 75 EFFPGTTDRIIMIS 88
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 47/188 (25%), Positives = 93/188 (49%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 85 (35.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 268 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 322
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 323 VTITGSAASISLAQYLINVRLSS 345
Score = 77 (32.2 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+PV+GS ++ +TI+
Sbjct: 283 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 326
Score = 76 (31.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMSEEIVQV 247
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ I Q
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAG-IPQS 154
Query: 248 VGDINNVKNAVAIISSRLRES 268
+ I VK ++ L +S
Sbjct: 155 I--IECVKQICVVMLETLSQS 173
Score = 52 (23.4 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/188 (25%), Positives = 93/188 (49%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 280 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 334
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 335 VTITGSAASISLAQYLINVRLSS 357
Score = 81 (33.6 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFR-----MLCPIDKVGRVIGESEGIVELLQNE 376
P G + +G S V+ ++G D + + P D +G +IG + ++
Sbjct: 257 PMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQM 316
Query: 377 IGVDLKVADPVDGSDEQIITIS 398
G +K+A+PV+GS ++ +TI+
Sbjct: 317 SGAQIKIANPVEGSTDRQVTIT 338
Score = 76 (31.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 71 (30.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMSEEIVQV 247
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ I Q
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAG-IPQS 154
Query: 248 VGDINNVKNAVAIISSRLRES 268
+ I VK ++ L +S
Sbjct: 155 I--IECVKQICVVMLETLSQS 173
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/188 (25%), Positives = 93/188 (49%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 280 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 334
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 335 VTITGSAASISLAQYLINVRLSS 357
Score = 81 (33.6 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 322 PRPSGYSIEAGAAPMSDSVQPFYGEDLVFR-----MLCPIDKVGRVIGESEGIVELLQNE 376
P G + +G S V+ ++G D + + P D +G +IG + ++
Sbjct: 257 PMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQM 316
Query: 377 IGVDLKVADPVDGSDEQIITIS 398
G +K+A+PV+GS ++ +TI+
Sbjct: 317 SGAQIKIANPVEGSTDRQVTIT 338
Score = 76 (31.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 71 (30.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMSEEIVQV 247
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ I Q
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAG-IPQS 154
Query: 248 VGDINNVKNAVAIISSRLRES 268
+ I VK ++ L +S
Sbjct: 155 I--IECVKQICVVMLETLSQS 173
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 55/238 (23%), Positives = 104/238 (43%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + +P + T+ + I G Q+ + + ++ + + P S+
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSS 184
Query: 522 GPT----GSALVVEAASPI---DITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAG 572
P G A ++ I D+T ++ TH + S E G
Sbjct: 185 SPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKG 242
Score = 109 (43.4 bits), Expect = 0.00043, Sum P(2) = 0.00042
Identities = 49/215 (22%), Positives = 94/215 (43%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + +E + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLP---NSTERAITIAGIP 152
Query: 252 NNVKNAVAIISSRLRESQHRDRS-HFHGR-LHSPDRFFPDDDYVPHMNNTARRPSMDGAR 309
++ V I + ES + + + + SP F Y + P D +
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYT--IQGQYAIPQPDLTK 210
Query: 310 FSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFY-GEDLVFR-----MLCPIDKVGRVI 363
+ +++ P G + +G S V+ ++ G D + + P D +G +I
Sbjct: 211 LHQLAMQQSHF-PMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCII 269
Query: 364 GESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
G + ++ G +K+A+PV+GS ++ +TI+
Sbjct: 270 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 304
Score = 85 (35.0 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 246 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 300
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 301 VTITGSAASISLAQYLINVRLSS 323
Score = 76 (31.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 52 (23.4 bits), Expect = 0.00043, Sum P(2) = 0.00042
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 107 (42.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 34/137 (24%), Positives = 68/137 (49%)
Query: 289 DDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPS-GY-SIEAGAAPMSDSVQPFYGE 346
DD Y +++R MD R R++ YG + GY S + + + Y +
Sbjct: 296 DDQYY-----SSQRGHMDERRHGERRGRNDRYGGSMNDGYDSNSSWDSSYQSGGRSSYSD 350
Query: 347 DLVF--RMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS-SEEGP 403
V ++ P D G +IG+ ++ +++E G +K+ +P+ GS+++IITI+ +++
Sbjct: 351 GPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQI 410
Query: 404 DDELFPAQEALLHIQTR 420
+ + Q + LH+ R
Sbjct: 411 QNAQYLLQNSALHLLGR 427
Score = 78 (32.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+++ + G ++GKGGK I+ +R + + + P D S P E I+ V DI
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV-P-DSSGP------ERILSVSADI 94
Query: 252 NNVKNAVAIISSRLRESQH 270
V + I L E QH
Sbjct: 95 PTVAEILLKIIPTLEEYQH 113
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 132 (51.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 44/160 (27%), Positives = 77/160 (48%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + ++D S E+I+TI+ G + +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISD--GSSPERIVTIT---GASEVI 71
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + I +++ +T RL+ P+S+ G L G+ GS + E+R STG
Sbjct: 72 FKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTG 131
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTT 501
A +Q+ + +P T+ V I G A + + T
Sbjct: 132 AQVQVAG-DLLP---DSTERAVTISGTPHAITQCVKHICT 167
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 141 (54.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 79/350 (22%), Positives = 146/350 (41%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
V +++ VG L+GK G+ ++++ ET T+I I +D S+ E + V G
Sbjct: 268 VPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVRGT 323
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARF 310
I NA I +LRE+ D + + + +P +N +A G
Sbjct: 324 IEACANAEIEIMKKLREAFENDMLAVNQQAN----------LIPGLNLSALGIFSTGLSV 373
Query: 311 SGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQ-----PF-----YGEDLVFRMLCPIDKVG 360
P P + + S PF Y E + P VG
Sbjct: 374 LPPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVG 433
Query: 361 RVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQ 418
+IG+ ++ L G +K+A P +G D E+++ I+ GP + F AQ + +
Sbjct: 434 AIIGKKGAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-K 488
Query: 419 TRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACV 476
+ + K+ + + + VPSS G + G+ G +++E++ T A + I+ R++ P
Sbjct: 489 LKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD-- 545
Query: 477 SGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGS 526
+ +V+I+G A++ A ++R + + Q++ P P S
Sbjct: 546 ENEEVIVRIIGHFFASQTA----QRKIREIVQQVKQQEQRYPQGVAPQRS 591
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 118 (46.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 39/154 (25%), Positives = 78/154 (50%)
Query: 345 GEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD-EQIITISSEEGP 403
GE V + P VG +IG+ ++ L + G +K+A P + E+++ I+ GP
Sbjct: 270 GEQEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIIT---GP 326
Query: 404 DDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
+ F AQ ++ + + + K+ + + + VPS+ G + G+ G +++E++ T
Sbjct: 327 PEAQFKAQ-GRIYGKLKEENFFTAKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTS 385
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDA 495
A + I+ R++ P D V+I+G A++ A
Sbjct: 386 AEV-IVPRDQTPD--ENDDVFVKIIGHFFASQTA 416
Score = 66 (28.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V +++ VG L+GK G+ ++++ +T T+I I V E + V G +
Sbjct: 141 VPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLT---VYNQERTISVRGGV 197
Query: 252 NNVKNAVAIISSRLRESQHRD 272
A I +LRE+ D
Sbjct: 198 EECCKAEGEIMKKLREAHEND 218
Score = 54 (24.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I+ + +T++++ I ++++
Sbjct: 63 RILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENA 101
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 136 (52.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 84 (34.6 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARD 494
L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD V I G +
Sbjct: 242 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQVTITGSAASISL 296
Query: 495 ALVEVTTRLRS 505
A + RL S
Sbjct: 297 AQYLINVRLSS 307
Score = 77 (32.2 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+PV+GS ++ +TI+
Sbjct: 245 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 288
Score = 70 (29.7 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSI 155
Query: 245 VQVVGDI 251
++ V I
Sbjct: 156 IECVKQI 162
Score = 53 (23.7 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISE---GNCPERIITLA 62
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 110 (43.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 46/216 (21%), Positives = 93/216 (43%)
Query: 312 GSNYRSNNYGPRPSGYSIEAGAAP--MSDSVQPF-YGEDLVFRMLCPIDKVGRVIGESEG 368
G N + P SG P M+ F E + P VG +IG+
Sbjct: 367 GLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQ 426
Query: 369 IVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADK 428
++ L G +K+A P + D ++ + GP + F AQ ++ + + + + K
Sbjct: 427 HIKQLSRFAGASIKIA-PAEAPDAKVRMVIIT-GPPEAQFKAQ-GRIYGKIKEENFVSPK 483
Query: 429 DNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIV 486
+ + + + VPS G + G+ G +++E++ + A + ++ R++ P +V+I
Sbjct: 484 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKIT 540
Query: 487 GEI---QAARDALVEVTTRLRSYLYRDFFQKETPPS 519
G Q A+ + E+ T+++ + + Q P S
Sbjct: 541 GHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 77 (32.2 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
+ +++ VG L+GK G+ ++++ +T T+I I P + E + V G++
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT---LYNPERTITVKGNV 333
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
A I ++RES D + + + H
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAH 363
Score = 55 (24.4 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I + +T+++I + ++++
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 110 (43.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 46/216 (21%), Positives = 93/216 (43%)
Query: 312 GSNYRSNNYGPRPSGYSIEAGAAP--MSDSVQPF-YGEDLVFRMLCPIDKVGRVIGESEG 368
G N + P SG P M+ F E + P VG +IG+
Sbjct: 367 GLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQ 426
Query: 369 IVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADK 428
++ L G +K+A P + D ++ + GP + F AQ ++ + + + + K
Sbjct: 427 HIKQLSRFAGASIKIA-PAEAPDAKVRMVIIT-GPPEAQFKAQ-GRIYGKIKEENFVSPK 483
Query: 429 DNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIV 486
+ + + + VPS G + G+ G +++E++ + A + ++ R++ P +V+I
Sbjct: 484 EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKIT 540
Query: 487 GEI---QAARDALVEVTTRLRSYLYRDFFQKETPPS 519
G Q A+ + E+ T+++ + + Q P S
Sbjct: 541 GHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 77 (32.2 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
+ +++ VG L+GK G+ ++++ +T T+I I P + E + V G++
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT---LYNPERTITVKGNV 333
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
A I ++RES D + + + H
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAH 363
Score = 55 (24.4 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
R++V VG ++GK G I + +T+++I + ++++
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA 237
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 135 (52.6 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 138 (53.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 45/154 (29%), Positives = 79/154 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ + + + + G + +++ E+I+TI+ GP D +
Sbjct: 14 LTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISE--GNCPERIVTIT---GPTDAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + I + + A +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 69 FKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 462 ANIQIL-----SREEVPACVSGT-DELVQIVGEI 489
A +Q+ + E +SGT D ++Q V +I
Sbjct: 129 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI 162
Score = 83 (34.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 402 GPDDELFPAQEALLHIQTRIVDL-----GADKDNIITTR-LLVPSSEIGCLEGRDGS-LS 454
G FP ++ LH +L G D +T L +P+ IGC+ GR G+ ++
Sbjct: 226 GQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 285
Query: 455 EMRRSTGANIQILSREE 471
E+R+ +GA I+I + E
Sbjct: 286 EIRQMSGAQIKIANATE 302
Score = 79 (32.9 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R V++S + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAI 155
Query: 245 VQVVGDI 251
+Q V I
Sbjct: 156 IQCVKQI 162
Score = 68 (29.0 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 269 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERI+ I+
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISE---GNCPERIVTIT 62
Score = 39 (18.8 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 516 TPPSSTGPT--GSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIP 561
TP T P G L + ++ + PPA+TH+ + IP
Sbjct: 223 TPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE-LTIP 269
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 136 (52.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 41/158 (25%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471
D T L +P++ IGC+ GR G+ ++E+R+ +GA I+I + E
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE 320
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + I V +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 155
Query: 252 NN-VKNAVAIISSRLRES 268
VK ++ L +S
Sbjct: 156 TECVKQICLVMLETLSQS 173
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 72 DPSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
+ L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE---GNCPERIITLT 62
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 135 (52.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 85 (35.0 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 233 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 287
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 288 VTITGSAASISLAQYLINVRLSS 310
Score = 76 (31.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 135 (52.6 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 264 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 318
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 319 VTITGSAASISLAQYLINVRLSS 341
Score = 77 (32.2 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P D +G +IG + ++ G +K+A+PV+GS ++ +TI+
Sbjct: 279 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
Score = 76 (31.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSI 155
Query: 245 VQVVGDI 251
++ V I
Sbjct: 156 IECVKQI 162
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 42/158 (26%), Positives = 82/158 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
A +Q+ + +P + T+ + I G Q+ + + ++
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 85 (35.0 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 425 GADKDNIITTR-LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDEL 482
G D T+ L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD
Sbjct: 277 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQ 331
Query: 483 VQIVGEIQAARDALVEVTTRLRS 505
V I G + A + RL S
Sbjct: 332 VTITGSAASISLAQYLINVRLSS 354
Score = 76 (31.8 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ VG ++GK G+ +++MR E+ +I I S C E I+ + G N +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEGNC---PERIITLAGPTNAI 68
Query: 255 KNAVAIISSRLRE 267
A A+I +L E
Sbjct: 69 FKAFAMIIDKLEE 81
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEI 244
V R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ + I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSI 155
Query: 245 VQVVGDI 251
++ V I
Sbjct: 156 IECVKQI 162
Score = 52 (23.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 108 (43.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 46/217 (21%), Positives = 93/217 (42%)
Query: 312 GSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPF----YGEDLVFRMLCPIDKVGRVIGESE 367
G N + P SG P S P+ E + P VG +IG+
Sbjct: 367 GLNLNALGLFPPTSGMPPPTSGPP-STLTPPYPQFEQSETETVHLFIPALSVGAIIGKQG 425
Query: 368 GIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGAD 427
++ L G +K+A P + D ++ + GP + F AQ ++ + + + +
Sbjct: 426 QHIKQLSRFAGASIKIA-PAEAPDAKVRMVIIT-GPPEAQFKAQ-GRIYGKIKEENFVSP 482
Query: 428 KDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQI 485
K+ + + + VPS G + G+ G +++E++ + A + ++ R++ P +V+I
Sbjct: 483 KEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEV-VVPRDQTPD--ENDQVVVKI 539
Query: 486 VGEI---QAARDALVEVTTRLRSYLYRDFFQKETPPS 519
G Q A+ + E+ T+++ + + Q P S
Sbjct: 540 TGHFYACQVAQRKIQEILTQVKQHQQQKALQSGPPQS 576
Score = 76 (31.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/90 (23%), Positives = 41/90 (45%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
+ +++ VG L+GK G+ ++++ +T T+I I P + E + V G +
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT---LYNPERTITVKGSV 333
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
A I ++RES D + + + H
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAH 363
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 44/178 (24%), Positives = 89/178 (50%)
Query: 358 KVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLH- 416
+VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +F A ++
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAIFKAFAMIIDK 59
Query: 417 ----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREE 471
I + + + A +T RL+VP+S+ G L G+ G + E+R STGA +Q+ +
Sbjct: 60 LEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DM 118
Query: 472 VPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALV 529
+P + T+ + I G Q+ + + ++ + L + + T P P+ S ++
Sbjct: 119 LP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVI 173
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 337 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 392
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 393 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 427
Score = 82 (33.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+++ + G ++GKGGK I+ +R + + + P D S P E I+ + DI
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGP------ERILSISADI 94
Query: 252 NNVKNAVAIISSRLRESQHRDRSHF 276
+ + I L E QH S F
Sbjct: 95 ETIGEILKKIIPTLEEYQHYKGSDF 119
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 98 (39.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 327 YSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP 386
YS G D P + ++ P D G +IG+ ++ +++E G +K+ +P
Sbjct: 334 YSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP 389
Query: 387 VDGSDEQIITISSEEGPDDELFPAQEAL 414
++GS+++IITI+ G D++ AQ L
Sbjct: 390 LEGSEDRIITIT---GTQDQIQNAQYLL 414
Score = 82 (33.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+++ + G ++GKGGK I+ +R + + + P D S P E I+ + DI
Sbjct: 40 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGP------ERILSISADI 91
Query: 252 NNVKNAVAIISSRLRESQHRDRSHF 276
+ + I L E QH S F
Sbjct: 92 ETIGEILKKIIPTLEEYQHYKGSDF 116
Score = 64 (27.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 175
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 176 VECIKIILDLISESPIKGRA 195
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/146 (27%), Positives = 75/146 (51%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTTAI 68
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTG 461
F A ++ I + + + A +T R++VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVG 487
A +Q+ + +P + T+ + I G
Sbjct: 129 AQVQVAG-DMLP---NSTERAITIAG 150
Score = 112 (44.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 49/209 (23%), Positives = 89/209 (42%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
V R+VV G L+GKGG I+++R T Q+++ LP + +E + + G
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLP---NSTERAITIAGTP 152
Query: 252 NNVKNAVAIISSRLRESQHRDRS-HFHGRLH-SPDRFFPDDDYVPHMNNTARRPSMDGAR 309
++ V I + ES + + + + SP F Y + +P + +
Sbjct: 153 LSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDL--TK 210
Query: 310 FSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGI 369
+ + + PS AG M S Q E + P D +G +IG
Sbjct: 211 LHQLAMQQSPFPLAPSSQGFTAG---MDASAQTGSHE-----LTIPNDLIGCIIGRQGAK 262
Query: 370 VELLQNEIGVDLKVADPVDGSDEQIITIS 398
+ ++ G +K+A+PV+GS ++ +TI+
Sbjct: 263 INEIRQMSGAQIKIANPVEGSSDRQVTIT 291
Score = 52 (23.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 75 LMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGD-EERIIEIS 129
L VT T R+L H R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLA 62
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 125 (49.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 39/154 (25%), Positives = 78/154 (50%)
Query: 344 YGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEE 401
Y E + + P VG +IG+ ++ L G +K+A P +G D E+++ I+
Sbjct: 19 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT--- 74
Query: 402 GPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRS 459
GP + F AQ + + + + K+ + + + VPSS G + G+ G +++E++
Sbjct: 75 GPPEAQFKAQGRIFG-KLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNL 133
Query: 460 TGANIQILSREEVPACVSGTDELVQIVGEIQAAR 493
T A + I+ R++ P + +V+I+G A++
Sbjct: 134 TSAEV-IVPRDQTPD--ENEEVIVRIIGHFFASQ 164
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 79/319 (24%), Positives = 139/319 (43%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGD 250
V +++ VG L+GK G+ ++++ ET T+I I +D S+ E + V G
Sbjct: 268 VPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN----PERTITVKGT 323
Query: 251 INNVKNAVAIISSRLRESQHRDRSHFHGRLH-------SPDRFFPDDDYV--PHMNNTAR 301
I +A I +LRE+ D + + + S F V P
Sbjct: 324 IEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGA 383
Query: 302 RPSMDGARFSG-SNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVG 360
PS F+ S Y S+ Y P + G P S Y E + P VG
Sbjct: 384 PPSPPYHPFATHSGYFSSLY---PHHHF---GPFPHHHS----YPEQETVSLFIPTQAVG 433
Query: 361 RVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSEEGPDDELFPAQEALLHIQ 418
+IG+ ++ L G +K+A P +G D E+++ I+ GP + F AQ + +
Sbjct: 434 AIIGKKGAHIKQLARFAGASIKIA-PAEGPDVSERMVIIT---GPPEAQFKAQGRIFG-K 488
Query: 419 TRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACV 476
+ + K+ + + + VPSS G + G+ G +++E++ T A + I+ R++ P
Sbjct: 489 LKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD-- 545
Query: 477 SGTDELVQIVGEIQAARDA 495
+ +V+I+G A++ A
Sbjct: 546 ENEEVIVRIIGHFFASQTA 564
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 99 (39.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 327 YSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP 386
YS G D P + ++ P D G +IG+ ++ +++E G +K+ +P
Sbjct: 335 YSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP 390
Query: 387 VDGSDEQIITISSEEGPDDELFPAQEALLHIQ 418
++GS+++IITI+ G D++ AQ L + Q
Sbjct: 391 LEGSEDRIITIT---GTQDQIQNAQYLLQNRQ 419
Score = 78 (32.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S + + +G+
Sbjct: 40 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD-TETIGE 96
Query: 251 INNVKNAVAIISSRLRESQHRDRSHF 276
I +K II + L E QH S F
Sbjct: 97 I--LKK---IIPT-LEEYQHYKGSDF 116
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 99 (39.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 297 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 352
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 353 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 387
Score = 77 (32.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 17 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 73
Query: 251 I 251
I
Sbjct: 74 I 74
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 100 (40.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 416
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDL 424
G +K+ +P++GS+++IITI+ G D++ AQ L + + D+
Sbjct: 417 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLLQNSVKQYADV 461
Score = 77 (32.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 99
Query: 251 I 251
I
Sbjct: 100 I 100
Score = 65 (27.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPQSTDRVVLIGGKPDRV 202
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 203 VECIKIILDLISESPIKGRA 222
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 98 (39.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 327 YSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP 386
YS G D P + ++ P D G +IG+ ++ +++E G +K+ +P
Sbjct: 335 YSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP 390
Query: 387 VDGSDEQIITISSEEGPDDELFPAQEAL 414
++GS+++IITI+ G D++ AQ L
Sbjct: 391 LEGSEDRIITIT---GTQDQIQNAQYLL 415
Score = 78 (32.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S + + +G+
Sbjct: 40 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD-TETIGE 96
Query: 251 INNVKNAVAIISSRLRESQHRDRSHF 276
I +K II + L E QH S F
Sbjct: 97 I--LKK---IIPT-LEEYQHYKGSDF 116
Score = 64 (27.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 175
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 176 VECIKIILDLISESPIKGRA 195
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 98 (39.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 327 YSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP 386
YS G D P + ++ P D G +IG+ ++ +++E G +K+ +P
Sbjct: 335 YSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP 390
Query: 387 VDGSDEQIITISSEEGPDDELFPAQEAL 414
++GS+++IITI+ G D++ AQ L
Sbjct: 391 LEGSEDRIITIT---GTQDQIQNAQYLL 415
Score = 78 (32.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S + + +G+
Sbjct: 40 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD-TETIGE 96
Query: 251 INNVKNAVAIISSRLRESQHRDRSHF 276
I +K II + L E QH S F
Sbjct: 97 I--LKK---IIPT-LEEYQHYKGSDF 116
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 99 (39.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 342 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 397
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 398 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 432
Score = 77 (32.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 46 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 102
Query: 251 I 251
I
Sbjct: 103 I 103
Score = 65 (27.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 151 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPQSTDRVVLIGGKPDRV 205
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 206 VECIKIILDLISESPIKGRA 225
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 99 (39.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 416
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 417 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 451
Score = 77 (32.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 99
Query: 251 I 251
I
Sbjct: 100 I 100
Score = 64 (27.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 202
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 203 VECIKIILDLISESPIKGRA 222
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 99 (39.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 416
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 417 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 451
Score = 77 (32.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 99
Query: 251 I 251
I
Sbjct: 100 I 100
Score = 64 (27.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 202
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 203 VECIKIILDLISESPIKGRA 222
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 99 (39.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 361 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 416
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 417 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 451
Score = 77 (32.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP-RCVSMSEEIVQVVGD 250
V R+++ + G ++GKGGK I+ +R + + + P D S P R +S+S +I + +G+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISADI-ETIGE 99
Query: 251 I 251
I
Sbjct: 100 I 100
Score = 64 (27.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 202
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 203 VECIKIILDLISESPIKGRA 222
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 73/264 (27%), Positives = 115/264 (43%)
Query: 292 YVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFR 351
Y+ M+ A P R G R + P SG S+ G S QP D R
Sbjct: 153 YIMDMDAAAALPGTRNRR-GGRTSREQDSQPGTSGSSL--G----SRQKQP----DFPLR 201
Query: 352 MLCPIDKVGRVIGESEGI-VELL--QNEIGVDLKVADPVDGSDEQIITI-SSEEGPDDEL 407
ML P VG +IG+ EG+ ++ + Q + VD+ + G+ E+ ITI S+ EG
Sbjct: 202 MLVPTQFVGAIIGK-EGLTIKNITKQTQSKVDIHRKENA-GAAEKPITIHSTPEGCSTAC 259
Query: 408 FPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQI 466
+ + Q VD +D I ++L +S +G L G++G +L ++ T I I
Sbjct: 260 HMIMDIM---QKEAVDTKVTED--IPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITI 314
Query: 467 LSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFF----QKETPP---- 518
S +++ + + + + G I+A A VE+ +LR D Q P
Sbjct: 315 SSLQDLT--IYNPERTIIVKGSIEACCRAEVEIMKKLREAYENDVAAINQQSNLIPGLSL 372
Query: 519 SSTG--PTGSALVVEAASPIDITP 540
S+ G TG +++ AA P I P
Sbjct: 373 SALGIFSTGLSVLPPAAGPRGIPP 396
Score = 116 (45.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 50/198 (25%), Positives = 94/198 (47%)
Query: 332 GAAPMSD-SVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS 390
G P S S Q E V + P VG +IG+ ++ L G +K+A P +
Sbjct: 417 GVPPASGISHQHTAPEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIA-PAESP 475
Query: 391 D--EQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLE 447
D ++++ I+ GP + F AQ + + + + K+ + + T + VPSS G +
Sbjct: 476 DVTQRMVIIT---GPPEAQFKAQGRIFG-KLKEENFFTAKEEVKLETHIKVPSSAAGRVI 531
Query: 448 GRDG-SLSEMRRSTGANIQILSREEVPACVSGTDEL-VQIVGEIQAARDALVEVTTRLRS 505
G+ G +++E++ T A + I+ R++ P DE+ V+I G A++ A ++ ++
Sbjct: 532 GKGGKTVNELQNLTSAEV-IVPRDQTP---DENDEVFVKISGHFFASQTAQRKIREIIQQ 587
Query: 506 YLYRDFFQKETPPSSTGP 523
++ QK + T P
Sbjct: 588 VKQQE--QKHQQGAPTTP 603
Score = 62 (26.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 203 VGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMS-EEIVQVVGDINNVKNAVAII 261
VG L+GK G+ ++++ +T+T+I I SL + E + V G I A I
Sbjct: 290 VGRLIGKEGRNLKKIEEDTETKITI----SSLQDLTIYNPERTIIVKGSIEACCRAEVEI 345
Query: 262 SSRLRESQHRD 272
+LRE+ D
Sbjct: 346 MKKLREAYEND 356
Score = 58 (25.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHS 233
RM+V VG ++GK G I+ + +T++++ I ++++
Sbjct: 201 RMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENA 239
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISSEEGPDDE 406
L R+L +VG +IG+ ++ ++ E G + ++D GS E+I+TI+ G +
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISD---GSCPERIVTITGTLGVIGK 128
Query: 407 LFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQ 465
F ++ K I T R++VP+++ G L G+ GS + ++R +TGA+IQ
Sbjct: 129 AFNMVCNKFEEDMLLLPNSVPKPPI-TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQ 187
Query: 466 ILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499
+ S E +P T+ V + G A + +V
Sbjct: 188 VAS-EMLP---HSTERAVTLSGTADAINLCMTQV 217
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 100 (40.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 34/160 (21%), Positives = 78/160 (48%)
Query: 352 MLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQ 411
+ P VG +IG+ ++ L G +K+A P + D ++ + GP + F AQ
Sbjct: 411 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIA-PAEAPDAKVRMVIIT-GPPEAQFKAQ 468
Query: 412 EALLHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSR 469
++ + + + + K+ + + + VPS G + G+ G +++E++ + A + ++ R
Sbjct: 469 -GRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPR 526
Query: 470 EEVPACVSGTDELVQIVGEI---QAARDALVEVTTRLRSY 506
++ P +V+I G Q A+ + E+ T+++ +
Sbjct: 527 DQTPD--ENDQVVVKITGHFYACQVAQRKIQEILTQVKQH 564
Score = 77 (32.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDI 251
+ +++ VG L+GK G+ ++++ +T T+I I P + E + V G++
Sbjct: 277 IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT---LYNPERTITVKGNV 333
Query: 252 NNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
A I ++RES D + + + H
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAH 363
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 128 (50.1 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 76/339 (22%), Positives = 138/339 (40%)
Query: 276 FHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAP 335
F LH + D +PH+NN+ P +D + + G + P G + GA
Sbjct: 19 FVDALHRVRQIAAKIDSIPHLNNST--PLVDPSVY-GYGVQKR---PLDDGVGNQLGALV 72
Query: 336 MSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQII 395
+V E+ F++ P VG +IG + +Q E G +++A G E+
Sbjct: 73 HQRAV---ITEE--FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPC 125
Query: 396 TISSEEGPDDELFPAQEALLHIQTRIVD-LGADKD---NIITTRLLVPSSEIGCLEGRDG 451
++ G + + A+ L I R + G D N LL+P+S++G + G+ G
Sbjct: 126 VLT---GTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGG 182
Query: 452 -SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE---IQAARDALVEVTTRLRSYL 507
++ +++ TG + ++ +P +G D+ ++I G+ +Q AR+ ++E+ +R
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLP---TGADKPLRITGDPFKVQQAREMVLEI---IREKD 236
Query: 508 YRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPS 567
DF + +S GS V + I R + + T +Q S
Sbjct: 237 QADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGIS 296
Query: 568 KEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTL 606
E A V +R + +IN + L R L
Sbjct: 297 PERAAQV-----MGPPDRCQHAARIINELILTAQEREIL 330
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
Identities = 38/142 (26%), Positives = 74/142 (52%)
Query: 364 GESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLH-----IQ 418
GES V+ ++ E G + +++ E+IIT++ GP + +F A ++ I
Sbjct: 25 GES---VKKMREESGARINISE--GNCPERIITLA---GPTNAIFKAFAMIIDKLEEDIS 76
Query: 419 TRIVDLGADKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVS 477
+ + + A +T RL+VP+S+ G L G+ G + E+R STGA +Q+ + +P +
Sbjct: 77 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---N 132
Query: 478 GTDELVQIVGEIQAARDALVEV 499
T+ + I G Q+ + + ++
Sbjct: 133 STERAITIAGIPQSIIECVKQI 154
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 105 (42.0 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
+++V G ++GKGG I+Q++ E+ + ++I + P VS+ E + ++GD N
Sbjct: 195 KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQK----PTDVSLQERCITIIGDKENN 250
Query: 255 KNAVAIISSRLRE 267
KNA +I S++ E
Sbjct: 251 KNACKMILSKIVE 263
Score = 66 (28.3 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 438 VPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGT-DELVQIVGEIQAARDA 495
VP IG + G G SL E++ +GAN+QI S++ + A GT + +V I G+ A A
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQI-SKKGIFA--PGTRNRIVTITGQPSAIAKA 579
Query: 496 --LVE 498
L+E
Sbjct: 580 QYLIE 584
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 79 TTY--RILCHDMXXXXXXXXXXXXXXXXRQHTGAWINV---HELIPGDEERIIEIS 129
TTY +IL + ++ TGA + + H+ PG ER+ I+
Sbjct: 97 TTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLIT 152
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 123 (48.4 bits), Expect = 0.00032, P = 0.00032
Identities = 55/232 (23%), Positives = 107/232 (46%)
Query: 276 FHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAP 335
F LH + D +PH+NN+ P +D + + G + P G + GA
Sbjct: 19 FVDALHRVRQIAAKIDSIPHLNNST--PLVDPSVY-GYGVQKR---PLDDGVGNQLGALV 72
Query: 336 MSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQII 395
+V E+ F++ P VG +IG + +Q E G +++A G E+
Sbjct: 73 HQRAV---ITEE--FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPC 125
Query: 396 TISSEEGPDDELFPAQEALLHIQTRIVD---LGADKDNIITTR-LLVPSSEIGCLEGRDG 451
++ G + + A+ L I R + D D T + LL+P+S++G + G+ G
Sbjct: 126 VLT---GTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGSSTIQELLIPASKVGLVIGKGG 182
Query: 452 -SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE---IQAARDALVEV 499
++ +++ TG + ++ +P +G D+ ++I G+ +Q AR+ ++E+
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLP---TGADKPLRITGDPFKVQQAREMVLEI 231
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 87 (35.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQI---RILPRDHSLPRCVSMSEEIVQVVGDI 251
R++VS GCL+G G++I+ +R ET T+ R++P H E I+ V G +
Sbjct: 73 RVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSH---------ERILTVSGKL 123
Query: 252 NNVKNAVAIISSRLRESQHRDRSHF 276
++ A++ + L + ++F
Sbjct: 124 DDCAKALSYFAQALINANIESYNYF 148
Score = 78 (32.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 339 SVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP-VDGSDEQIITI 397
S P E + R+L P ++G +IG ++ LQN + + + + GS+E+++ +
Sbjct: 154 SSTPNTEETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSNERLVEL 213
Query: 398 SSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVP 439
+G D+L+ + L I +R L D +I+ T VP
Sbjct: 214 ---QGTVDDLYDS----LRIISRC--LIEDFSSIVGTTYYVP 246
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 122 (48.0 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 55/232 (23%), Positives = 106/232 (45%)
Query: 276 FHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAP 335
F LH + D VPH+NN+ P +D + + G + P G + GA
Sbjct: 19 FVDALHRVRQIAAKIDSVPHLNNST--PLVDPSVY-GYGVQKR---PLDDGVGNQLGALV 72
Query: 336 MSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQII 395
+V E+ F++ P VG +IG + +Q E G +++A G E+
Sbjct: 73 HQRAV---ITEE--FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPC 125
Query: 396 TISSEEGPDDELFPAQEALLHIQTRIVD-LGADKD---NIITTRLLVPSSEIGCLEGRDG 451
++ G + + A+ L I R + G D N +L+P+S++G + G+ G
Sbjct: 126 VLT---GTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGG 182
Query: 452 -SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE---IQAARDALVEV 499
++ +++ TG + ++ +P +G D+ ++I G+ +Q AR+ ++E+
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLP---TGADKPLRITGDPFKVQQAREMVLEI 231
Score = 45 (20.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 548 TDPPAATHQS-VQIPATSQPSKEAAGSVSETVKQNESERREDVPT 591
+ PPAA HQ + ATS P G + E+ ++ P+
Sbjct: 442 SQPPAAPHQKGPALLATSNPHWPQRGWQRPVGRVKENSQQSQPPS 486
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 109 (43.4 bits), Expect = 0.00053, P = 0.00053
Identities = 44/164 (26%), Positives = 80/164 (48%)
Query: 341 QPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGS-DEQIITISS 399
+P L RML +VG +IG+ V+ ++ + + +++ GS E+I TI+
Sbjct: 11 EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE---GSCPERITTIT- 66
Query: 400 EEGPDDELFPAQEAL-LHIQTRIVDLGADKDNI----ITTRLLVPSSEIGCLEGRDGS-L 453
G +F A + + + A+ N+ +T RL++P+S+ G L G+ G+ +
Sbjct: 67 --GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 454 SEMRRSTGANIQIL-----SREEVPACVSGT-DELVQIVGEIQA 491
E+R +TGA +Q+ + E VSG D ++ V +I A
Sbjct: 125 KEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICA 168
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 97 (39.2 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 32/141 (22%), Positives = 70/141 (49%)
Query: 355 PIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
P VG +IG+ ++ L G +K+A P + D ++ + GP + F AQ
Sbjct: 415 PAQAVGALIGKKGQHIKQLSRFAGASIKIA-PAEAPDSKMRMVIVT-GPPEAQFKAQ-GR 471
Query: 415 LHIQTRIVDLGADKDNI-ITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEV 472
++ + + + K+ + + T + V ++ G + G+ G +++E++ T A + ++ RE+
Sbjct: 472 IYGKLKEENFFGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEV-VVPREQT 530
Query: 473 PACVSGTDELVQIVGEIQAAR 493
P +V+I+G A++
Sbjct: 531 PD--EHDQVIVKIIGHFYASQ 549
Score = 71 (30.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVV 248
+ V +++ VG L+GK G+ ++++ +T T+I I P +D +L E + V
Sbjct: 278 DEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYN----PERTITVK 333
Query: 249 GDINNVKNAVAIISSRLRESQHRDRSHFHGRLH 281
G I A I ++RE+ D + + + H
Sbjct: 334 GSIEACCLAEQEIMKKVREAYDNDIAAMNQQTH 366
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 98 (39.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQI 485
D + I T + +P+ +GC+ GR G+ ++E+RRS+GA I I + P +G + + I
Sbjct: 457 DGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIA---KAPHDETG-ERMFTI 512
Query: 486 VGEIQAARDAL 496
+G QA AL
Sbjct: 513 MGSAQANEKAL 523
Score = 68 (29.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R +VS G ++GK GK + +R ET + + +P + + ++ V G ++
Sbjct: 230 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGV---SKVVP---GVHDRVLTVTGALSGT 283
Query: 255 KNAVAIISSRLRE 267
A A+++ L E
Sbjct: 284 ARAYALVAKGLLE 296
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 99 (39.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 320 YGPRP-SGY--SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNE 376
Y P+ SGY S G D P + ++ P D G +IG+ ++ +++E
Sbjct: 326 YEPQGGSGYDYSYAGGRGSYGDLGGPI----ITTQVTIPKDLAGSIIGKGGQRIKQIRHE 381
Query: 377 IGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEAL 414
G +K+ +P++GS+++IITI+ G D++ AQ L
Sbjct: 382 SGASIKIDEPLEGSEDRIITIT---GTQDQIQNAQYLL 416
Score = 64 (27.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+++ + G ++G G I+++R T+T I++ C ++ +V + G + V
Sbjct: 113 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-----CPHSTDRVVLIGGKPDRV 167
Query: 255 KNAVAIISSRLRESQHRDRS 274
+ II + ES + R+
Sbjct: 168 VECIKIILDLISESPIKGRA 187
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 122 (48.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 55/232 (23%), Positives = 106/232 (45%)
Query: 276 FHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAP 335
F LH + D VPH+NN+ P +D + + G + P G + GA
Sbjct: 19 FVDALHRVRQIAAKIDSVPHLNNST--PLVDPSVY-GYGVQKR---PLDDGVGNQLGALV 72
Query: 336 MSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQII 395
+V E+ F++ P VG +IG + +Q E G +++A G E+
Sbjct: 73 HQRAV---ITEE--FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPC 125
Query: 396 TISSEEGPDDELFPAQEALLHIQTRIVD-LGADKD---NIITTRLLVPSSEIGCLEGRDG 451
++ G + + A+ L I R + G D N +L+P+S++G + G+ G
Sbjct: 126 VLT---GTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGG 182
Query: 452 -SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE---IQAARDALVEV 499
++ +++ TG + ++ +P +G D+ ++I G+ +Q AR+ ++E+
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLP---TGADKPLRITGDPFKVQQAREMVLEI 231
Score = 41 (19.5 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 548 TDPPAATHQSVQIPATS 564
+ PPAA HQ+ P +S
Sbjct: 442 SQPPAAPHQNTFPPRSS 458
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 89 (36.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487
+ I T + +P+ +GC+ GR GS +SE+R+++GA I I + P +G + + I+G
Sbjct: 285 EEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIA---KAPHDETG-ERMFTIMG 340
Query: 488 EIQAARDAL 496
+A AL
Sbjct: 341 SAKANETAL 349
Score = 72 (30.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVS-MSEEIVQVVG 249
++ R +VS G ++GKGGK + +R ET + + + V + + ++ + G
Sbjct: 45 QLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGV-------SKVVQGVHDRVLTITG 97
Query: 250 DINNVKNAVAIISSRLRE 267
+ A A+++ L E
Sbjct: 98 GCEGISKAYAVVARALLE 115
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 74 (31.1 bits), Expect = 0.0010, Sum P(3) = 0.0010
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
++++ G ++GKGG+ I Q++ ET I++ S +E + + G + +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Query: 255 KNAV-AIISSRLRE 267
NAV I+ ++RE
Sbjct: 113 -NAVHGFIAEKIRE 125
Score = 72 (30.4 bits), Expect = 0.0010, Sum P(3) = 0.0010
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 436 LLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGT-DELVQIVGEIQAAR 493
+ VP + +G + G+ G +L E + TGA IQI + E V GT + V I G A +
Sbjct: 429 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF---VPGTRNRKVTITGTPAATQ 485
Query: 494 DALVEVTTRL 503
A +T R+
Sbjct: 486 AAQYLITQRI 495
Score = 59 (25.8 bits), Expect = 0.0010, Sum P(3) = 0.0010
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 351 RMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD--EQIITISSE 400
+++ P G +IG+ V+ + + G ++++ DG + E+++T+S E
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGE 229
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 650 572 0.00080 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 108
No. of states in DFA: 609 (65 KB)
Total size of DFA: 285 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.94u 0.11s 54.05t Elapsed: 00:00:03
Total cpu time: 53.97u 0.11s 54.08t Elapsed: 00:00:03
Start: Tue May 21 13:49:17 2013 End: Tue May 21 13:49:20 2013
WARNINGS ISSUED: 1