Query 006320
Match_columns 650
No_of_seqs 342 out of 2115
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 4.9E-24 1.7E-28 205.5 12.4 172 76-269 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 1.9E-23 6.4E-28 198.5 15.1 156 78-269 2-158 (163)
3 3krm_A Insulin-like growth fac 99.9 1.7E-23 5.9E-28 198.7 13.2 155 347-507 2-158 (163)
4 2jzx_A Poly(RC)-binding protei 99.9 1.5E-23 5.2E-28 198.5 11.3 158 77-268 3-160 (160)
5 2anr_A Neuro-oncological ventr 99.9 2.1E-23 7E-28 201.1 8.8 155 346-506 4-176 (178)
6 3n89_A Defective in GERM LINE 99.9 4.8E-23 1.6E-27 216.1 11.7 227 189-504 27-260 (376)
7 2jvz_A KH type-splicing, FAR u 99.9 1.6E-22 5.4E-27 192.2 13.8 158 79-268 2-161 (164)
8 1j4w_A FUSE binding protein; s 99.9 1.4E-22 4.9E-27 194.4 12.7 168 78-265 2-174 (174)
9 1j4w_A FUSE binding protein; s 99.9 1.8E-22 6.3E-27 193.7 11.1 152 347-503 2-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 1.4E-22 4.9E-27 191.8 10.0 151 346-505 3-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 8.3E-22 2.8E-26 187.2 10.5 151 348-506 2-161 (164)
12 3n89_A Defective in GERM LINE 99.8 3.3E-19 1.1E-23 187.0 17.5 279 76-489 27-322 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 1.7E-17 6E-22 153.4 7.2 136 347-505 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 2E-16 7E-21 146.2 11.6 137 78-267 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 4.1E-15 1.4E-19 146.2 8.6 151 77-269 32-193 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.6 5.5E-15 1.9E-19 145.3 9.4 143 349-509 35-195 (219)
17 2axy_A Poly(RC)-binding protei 99.4 1.6E-13 5.5E-18 111.6 5.1 69 430-505 3-72 (73)
18 2axy_A Poly(RC)-binding protei 99.4 6.3E-13 2.2E-17 108.0 6.6 71 190-268 3-73 (73)
19 1dtj_A RNA-binding neurooncolo 99.3 9.8E-13 3.4E-17 107.9 6.5 73 431-505 2-75 (76)
20 1dtj_A RNA-binding neurooncolo 99.3 1.1E-12 3.7E-17 107.7 6.7 74 191-267 2-75 (76)
21 1zzk_A Heterogeneous nuclear r 99.3 2E-12 6.7E-17 107.7 7.8 72 430-506 5-77 (82)
22 2p2r_A Poly(RC)-binding protei 99.3 7.1E-13 2.4E-17 108.7 5.0 72 430-506 3-75 (76)
23 1wvn_A Poly(RC)-binding protei 99.3 2.5E-12 8.6E-17 107.0 7.3 74 76-160 3-76 (82)
24 1tua_A Hypothetical protein AP 99.3 3.8E-12 1.3E-16 122.0 9.5 140 350-506 6-161 (191)
25 1tua_A Hypothetical protein AP 99.3 2.3E-12 7.7E-17 123.6 7.8 146 80-268 5-161 (191)
26 1zzk_A Heterogeneous nuclear r 99.3 4.7E-12 1.6E-16 105.4 8.5 73 190-268 5-77 (82)
27 2p2r_A Poly(RC)-binding protei 99.3 2.6E-12 8.8E-17 105.4 6.7 73 190-268 3-75 (76)
28 1ec6_A RNA-binding protein NOV 99.3 2.3E-12 8E-17 108.5 5.9 75 192-269 3-77 (87)
29 1wvn_A Poly(RC)-binding protei 99.3 3.7E-12 1.3E-16 106.0 6.7 73 190-268 4-76 (82)
30 1ec6_A RNA-binding protein NOV 99.3 2.2E-12 7.4E-17 108.7 5.3 77 432-510 3-80 (87)
31 2opv_A KHSRP protein; KH domai 99.3 5.7E-12 1.9E-16 105.6 7.8 73 430-505 12-85 (85)
32 1x4n_A FAR upstream element bi 99.3 7.1E-12 2.4E-16 106.6 8.5 74 189-268 12-85 (92)
33 2dgr_A Ring finger and KH doma 99.3 2E-12 7E-17 107.4 4.8 71 428-506 6-77 (83)
34 1j5k_A Heterogeneous nuclear r 99.3 3.8E-12 1.3E-16 107.6 6.5 74 189-268 11-84 (89)
35 2hh2_A KH-type splicing regula 99.3 5.2E-12 1.8E-16 110.5 6.5 73 432-506 7-80 (107)
36 1x4m_A FAR upstream element bi 99.3 8E-12 2.7E-16 106.7 7.2 76 189-268 12-87 (94)
37 2dgr_A Ring finger and KH doma 99.2 3.7E-12 1.3E-16 105.8 4.6 70 189-267 7-76 (83)
38 1x4n_A FAR upstream element bi 99.2 1.5E-11 5E-16 104.7 8.4 73 77-160 13-85 (92)
39 2ctm_A Vigilin; K homology typ 99.2 1.2E-11 4E-16 105.7 7.7 76 427-508 12-88 (95)
40 1j5k_A Heterogeneous nuclear r 99.2 6.7E-12 2.3E-16 106.1 5.9 72 78-160 13-84 (89)
41 1x4m_A FAR upstream element bi 99.2 5.7E-12 1.9E-16 107.6 5.1 75 429-506 12-87 (94)
42 1we8_A Tudor and KH domain con 99.2 1.7E-11 5.7E-16 106.8 8.0 76 429-507 12-88 (104)
43 2hh2_A KH-type splicing regula 99.2 1.2E-11 4E-16 108.3 6.7 73 193-268 8-80 (107)
44 2hh3_A KH-type splicing regula 99.2 1.4E-11 4.9E-16 107.2 6.7 71 431-506 10-81 (106)
45 2opv_A KHSRP protein; KH domai 99.2 4.3E-11 1.5E-15 100.2 9.2 75 189-267 11-85 (85)
46 2cte_A Vigilin; K homology typ 99.2 2.4E-11 8.1E-16 103.7 7.1 74 427-507 12-86 (94)
47 2hh3_A KH-type splicing regula 99.2 2.5E-11 8.5E-16 105.7 6.6 71 192-268 11-81 (106)
48 2ctl_A Vigilin; K homology typ 99.1 6.2E-11 2.1E-15 101.7 7.7 73 430-506 15-88 (97)
49 1we8_A Tudor and KH domain con 99.1 4.4E-11 1.5E-15 104.1 6.7 76 190-269 13-88 (104)
50 1vig_A Vigilin; RNA-binding pr 99.1 4.4E-11 1.5E-15 96.5 5.2 66 431-503 4-70 (71)
51 1vig_A Vigilin; RNA-binding pr 99.1 6.5E-11 2.2E-15 95.5 5.1 68 190-265 3-70 (71)
52 2ctm_A Vigilin; K homology typ 99.1 9.1E-11 3.1E-15 100.2 5.8 74 189-269 14-87 (95)
53 2ctl_A Vigilin; K homology typ 99.1 1.3E-10 4.4E-15 99.6 6.7 74 190-268 15-88 (97)
54 2cte_A Vigilin; K homology typ 99.1 8.8E-11 3E-15 100.2 5.6 73 189-269 14-86 (94)
55 2ctk_A Vigilin; K homology typ 99.0 2.1E-10 7.2E-15 99.6 5.9 71 430-507 15-86 (104)
56 2ctf_A Vigilin; K homology typ 99.0 3.9E-10 1.3E-14 97.4 5.7 68 431-508 26-95 (102)
57 2ctk_A Vigilin; K homology typ 99.0 6.2E-10 2.1E-14 96.6 6.0 70 191-268 16-85 (104)
58 2ctj_A Vigilin; K homology typ 99.0 5.4E-10 1.8E-14 95.2 5.5 73 427-506 12-86 (95)
59 2ctj_A Vigilin; K homology typ 98.8 2.4E-09 8.2E-14 91.2 5.6 72 189-268 14-86 (95)
60 2ctf_A Vigilin; K homology typ 98.8 4.2E-09 1.4E-13 90.9 6.8 68 191-269 26-94 (102)
61 2cpq_A FragIle X mental retard 98.5 6.3E-08 2.1E-12 81.0 4.8 68 429-506 12-82 (91)
62 2cpq_A FragIle X mental retard 98.5 1E-07 3.6E-12 79.7 5.5 66 189-265 12-79 (91)
63 2yqr_A KIAA0907 protein; struc 98.3 1.9E-06 6.6E-11 76.0 8.8 74 77-160 10-100 (119)
64 2yqr_A KIAA0907 protein; struc 98.3 2.4E-06 8.2E-11 75.4 9.3 79 190-268 10-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.3 2.1E-06 7.2E-11 77.3 8.4 80 189-268 4-100 (131)
66 1k1g_A SF1-BO isoform; splicin 98.2 2.3E-06 8E-11 77.0 7.9 77 430-506 5-100 (131)
67 2bl5_A MGC83862 protein, quaki 97.9 3.3E-06 1.1E-10 76.4 2.7 73 432-504 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 97.8 1.8E-05 6.1E-10 71.6 4.6 76 192-267 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 97.6 4.5E-05 1.5E-09 86.0 6.3 92 144-265 537-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.5 4.5E-05 1.5E-09 85.9 4.4 85 408-503 537-629 (630)
71 2cxc_A NUSA; transcription ter 97.2 0.00026 8.9E-09 64.4 4.4 104 79-228 36-139 (144)
72 3v69_A Protein filia; RNA-bind 97.2 0.00071 2.4E-08 59.9 6.7 70 433-508 57-127 (140)
73 3v69_A Protein filia; RNA-bind 97.0 0.0013 4.5E-08 58.2 6.7 69 193-268 57-125 (140)
74 4aid_A Polyribonucleotide nucl 96.9 0.00035 1.2E-08 79.6 3.0 95 408-513 540-642 (726)
75 4aid_A Polyribonucleotide nucl 96.9 0.00049 1.7E-08 78.4 3.9 96 143-268 539-635 (726)
76 2cxc_A NUSA; transcription ter 96.9 0.00049 1.7E-08 62.6 3.2 100 348-467 36-139 (144)
77 2asb_A Transcription elongatio 95.3 0.024 8.1E-07 56.0 6.4 96 88-230 126-222 (251)
78 1k0r_A NUSA; two component arr 94.9 0.038 1.3E-06 57.6 6.9 96 88-230 249-345 (366)
79 1k0r_A NUSA; two component arr 93.8 0.039 1.4E-06 57.5 4.2 97 357-471 249-347 (366)
80 2asb_A Transcription elongatio 93.6 0.051 1.7E-06 53.7 4.3 95 357-471 126-224 (251)
81 3cdi_A Polynucleotide phosphor 93.5 0.019 6.5E-07 65.7 1.4 94 408-512 530-631 (723)
82 3cdi_A Polynucleotide phosphor 93.1 0.027 9.3E-07 64.4 1.8 64 192-267 560-624 (723)
83 1hh2_P NUSA, N utilization sub 92.7 0.18 6.1E-06 52.3 7.1 95 88-229 245-340 (344)
84 1e3p_A Guanosine pentaphosphat 92.2 0.019 6.5E-07 66.0 -1.2 62 431-503 597-660 (757)
85 1hh2_P NUSA, N utilization sub 91.6 0.11 3.7E-06 54.0 3.8 95 357-469 245-341 (344)
86 1e3p_A Guanosine pentaphosphat 90.6 0.032 1.1E-06 64.1 -1.4 61 193-265 599-660 (757)
87 3iev_A GTP-binding protein ERA 60.7 2.5 8.4E-05 43.1 1.1 46 603-648 239-291 (308)
88 2pt7_G HP1451, hypothetical pr 53.4 5.3 0.00018 36.3 1.8 32 80-111 34-65 (152)
89 1wh9_A 40S ribosomal protein S 51.2 5.2 0.00018 33.1 1.3 28 80-107 36-63 (92)
90 2pt7_G HP1451, hypothetical pr 49.7 8.2 0.00028 35.0 2.5 30 349-378 34-63 (152)
91 1wf3_A GTP-binding protein; GT 43.5 6.5 0.00022 39.8 0.9 43 604-648 230-281 (301)
92 1wh9_A 40S ribosomal protein S 37.3 11 0.00036 31.2 1.1 40 604-643 35-81 (92)
93 2kl8_A OR15; structural genomi 30.6 1.2E+02 0.004 22.9 5.7 29 479-507 40-68 (85)
94 2ysg_A Syntaxin-binding protei 24.3 21 0.00072 24.3 0.6 23 4-29 17-39 (40)
95 3j20_C 30S ribosomal protein S 22.2 28 0.00097 33.2 1.3 27 81-107 42-68 (210)
96 3u5c_D RP13, YS3, 40S ribosoma 22.1 29 0.00099 33.7 1.3 28 80-107 45-72 (240)
97 3gku_A Probable RNA-binding pr 20.6 29 0.001 33.5 1.0 33 81-113 94-126 (225)
98 2xzm_C KH domain containing pr 20.6 38 0.0013 33.0 1.8 28 80-107 48-75 (243)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=4.9e-24 Score=205.48 Aligned_cols=172 Identities=20% Similarity=0.320 Sum_probs=132.7
Q ss_pred CccEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecC---CCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHH
Q 006320 76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL---IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFL 152 (650)
Q Consensus 76 ~~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~---~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~ 152 (650)
..+++++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+ ..++.+|..+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-----------~~~v~~A~~~ 71 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-----------IEALNAVHGF 71 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-----------HHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-----------HHHHHHHHHH
Confidence 457999999999999999999999999999999999999753 56789999999996 3468888888
Q ss_pred HHHHhhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCC
Q 006320 153 IHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDH 232 (650)
Q Consensus 153 i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 232 (650)
|.+.+.+........ ...... .+..........+++|+||..++|+||||+|++|++|+++|||+|+|.+..
T Consensus 72 I~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~- 143 (178)
T 2anr_A 72 IAEKIREMPQNVAKT--EPVSIL-----QPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP- 143 (178)
T ss_dssp HHHHHTCCCCC------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-
T ss_pred HHHHHhccCCccccC--Cccccc-----CCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-
Confidence 888886543211000 000000 000000113457899999999999999999999999999999999997532
Q ss_pred CCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 233 SLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 233 ~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
.+....++.|+|+|+.++|.+|+.+|.++|++++
T Consensus 144 ---~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 144 ---DGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -------CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred ---CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 2334678999999999999999999999999875
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=198.48 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=131.6
Q ss_pred cEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecC-CCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHH
Q 006320 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL-IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (650)
Q Consensus 78 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~-~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~ 156 (650)
+-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+ ..++.+|..+|.+.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~-----------~e~v~~A~~~I~~~ 70 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP-----------PEAQFKAQGRIYGK 70 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC-----------HHHHHHHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC-----------HHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999875 57889999999996 45788999999988
Q ss_pred hhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCC
Q 006320 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR 236 (650)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~ 236 (650)
+.+.... ++ ......+++|+||..++|+||||+|++|++|+++|||+|.|.. +..|.
T Consensus 71 ~~e~~~~-----------~~----------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~--~~~~~ 127 (163)
T 3krm_A 71 LKEENFF-----------GP----------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR--DQTPD 127 (163)
T ss_dssp HHHTTSS-----------CS----------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT--TCCCC
T ss_pred Hhccccc-----------cc----------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC--CCCCC
Confidence 8764211 00 1134568899999999999999999999999999999999964 33343
Q ss_pred ccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 237 CVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 237 ~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
...++.|+|+|++++|++|+.+|.+++.+..
T Consensus 128 --~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 128 --ENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp --TTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred --CCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 1345589999999999999999999998853
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=198.74 Aligned_cols=155 Identities=21% Similarity=0.369 Sum_probs=125.3
Q ss_pred ceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCC-CCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccC
Q 006320 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLG 425 (650)
Q Consensus 347 ~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~-~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~ 425 (650)
..+++|+||.+++|.|||++|++|++|+++|||+|+|++. .+++.+|+|+|+|+ .+++..|...|+.+........
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~---~e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP---PEAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC---HHHHHHHHHHHHHHHHHTTSSC
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcccccc
Confidence 3578999999999999999999999999999999999875 46788999999974 4555555555554433221112
Q ss_pred CCCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHH
Q 006320 426 ADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLR 504 (650)
Q Consensus 426 ~~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~ 504 (650)
+..+...+.+|+||.+++|+||||+|+ |++|+++|||+|+|. ++..|. ..+++.|+|+|++++|++|+.+|.++|+
T Consensus 79 ~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~-~~~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 79 PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVP-RDQTPD--ENDQVIVKIIGHFYASQMAQRKIRDILA 155 (163)
T ss_dssp SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECC-TTCCCC--TTSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEEC-CCCCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 234456788999999999999999999 999999999999986 344453 2334489999999999999999999999
Q ss_pred hhh
Q 006320 505 SYL 507 (650)
Q Consensus 505 ~~~ 507 (650)
+..
T Consensus 156 ~~~ 158 (163)
T 3krm_A 156 QVK 158 (163)
T ss_dssp HHT
T ss_pred HHH
Confidence 863
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=198.50 Aligned_cols=158 Identities=30% Similarity=0.444 Sum_probs=131.8
Q ss_pred ccEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHH
Q 006320 77 VTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (650)
Q Consensus 77 ~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~ 156 (650)
.+++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++.+|+|+|+|+ ..++.+|..+|.+.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~-----------~~~v~~A~~~I~~~ 69 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGP-----------TNAIFKAFAMIIDK 69 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEE-----------HHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeC-----------HHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999985 678999999996 34688999999888
Q ss_pred hhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCC
Q 006320 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR 236 (650)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~ 236 (650)
+.+...... . ... ......++++|+||..++|+||||+|++|++|+++|||+|+|.+ +.+|.
T Consensus 70 i~e~~~~~~-~----~~~-----------~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~--~~~~~ 131 (160)
T 2jzx_A 70 LEEDISSSM-T----NST-----------AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPN 131 (160)
T ss_dssp HHHHHTSCC-C----SSS-----------CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC--CCSTT
T ss_pred HHhhccccC-C----CCc-----------cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC--CCCCC
Confidence 876422110 0 000 01134689999999999999999999999999999999999964 33454
Q ss_pred ccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 237 CVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 237 ~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
..++.|+|+|++++|++|+.+|.+++.++
T Consensus 132 ---~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 160 (160)
T 2jzx_A 132 ---STERAITIAGIPQSIIECVKQICVVMLET 160 (160)
T ss_dssp ---CCEEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_pred ---CCceEEEEEcCHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999998763
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=2.1e-23 Score=201.11 Aligned_cols=155 Identities=19% Similarity=0.354 Sum_probs=124.8
Q ss_pred CceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCC---CCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhh
Q 006320 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP---VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIV 422 (650)
Q Consensus 346 ~~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~---~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~ 422 (650)
.+++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+ .+++.+|.++|..+.....
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~---~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT---IEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC---HHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC---HHHHHHHHHHHHHHHhccC
Confidence 67899999999999999999999999999999999999764 24678999999975 4566666666655433211
Q ss_pred ccC--------------CCCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEe
Q 006320 423 DLG--------------ADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVG 487 (650)
Q Consensus 423 ~~~--------------~~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G 487 (650)
... ...+...+++|+||.+++|+||||+|+ ||+|+++|||+|+|.+..+ ++.+++++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~~~~~~~v~I~G 157 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GINLQNRVVTVSG 157 (178)
T ss_dssp CC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEES
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CCCCCceEEEEEc
Confidence 100 011234789999999999999999999 9999999999999975433 3346789999999
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q 006320 488 EIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 488 ~~~~v~~A~~~I~~~l~~~ 506 (650)
++++|++|+.+|.++|++.
T Consensus 158 ~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 158 EPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp SHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999876
No 6
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=4.8e-23 Score=216.09 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=162.0
Q ss_pred CCcEEEEEEEccceeeeeecCCc--hHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHh
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGG--KIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLR 266 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~ 266 (650)
.+.+++++.||..+|++||||+| ++|++|+++|||+|+|+..+..- .........|+|+|.+++|++|+.+|.+++-
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~-~~~~~ks~~VtItG~~enVE~AR~~I~~l~P 105 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGG-TTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCS-SSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccc-cCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999 99999999999999996432000 0112345789999999999999999987321
Q ss_pred hcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 006320 267 ESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGE 346 (650)
Q Consensus 267 ~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (650)
T Consensus 106 -------------------------------------------------------------------------------- 105 (376)
T 3n89_A 106 -------------------------------------------------------------------------------- 105 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCC--CCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhcc
Q 006320 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD--GSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDL 424 (650)
Q Consensus 347 ~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~--~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~ 424 (650)
+++.+.+|...+.. ..-+..|.+ ++.++++|.|+.... +.....|+|+|. ...+..|.+|+.++++.+.+.
T Consensus 106 -l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~---~~nv~~akeA~~~Ll~~l~~~ 178 (376)
T 3n89_A 106 -FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAR---EKNQHELIEAAKRLNEILFRE 178 (376)
T ss_dssp -EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEE---GGGHHHHHHHHHHHHHHHCC-
T ss_pred -ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcC---hhhHHHHHHHHHHHHHHHHhh
Confidence 12223333322211 011223433 567899999865321 223678999964 566777888888887777654
Q ss_pred CCCCCCceEEEEeecCCcceeeecCCC--c-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHH
Q 006320 425 GADKDNIITTRLLVPSSEIGCLEGRDG--S-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTT 501 (650)
Q Consensus 425 ~~~~~~~~~~~l~Vp~~~~g~IIGkgG--~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~ 501 (650)
.....+.+++.|.|+..+|..|||++| . |++|+++|||+|+++..++... .......|+|+|..++|.+|..+|++
T Consensus 179 e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 179 SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-TRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp -CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-ccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 333456799999999999999999999 4 6999999999998865432110 01234579999999999999999999
Q ss_pred HHH
Q 006320 502 RLR 504 (650)
Q Consensus 502 ~l~ 504 (650)
+|=
T Consensus 258 lLP 260 (376)
T 3n89_A 258 LLP 260 (376)
T ss_dssp TSE
T ss_pred hCC
Confidence 884
No 7
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=192.20 Aligned_cols=158 Identities=26% Similarity=0.397 Sum_probs=128.2
Q ss_pred EEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecC--CCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHH
Q 006320 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL--IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (650)
Q Consensus 79 ~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~--~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~ 156 (650)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .++..+|+|+|+|+ ..++.+|+.+|.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~-----------~~~v~~A~~~I~~i 70 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-----------PYKVQQACEMVMDI 70 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC-----------HHHHHHHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC-----------HHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999753 34678999999995 34688999999988
Q ss_pred hhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCC
Q 006320 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR 236 (650)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~ 236 (650)
+.+.... .+. ...+|++ ....+++|.||..++|+||||+|++|++|+++|||+|.|.+.+ +
T Consensus 71 i~e~~~~-~~~--~~~~~~~------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~- 131 (164)
T 2jvz_A 71 LRERDQG-GFG--DRNEYGS------------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---G- 131 (164)
T ss_dssp TTCSSSC-CCS--SCSSCTT------------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---T-
T ss_pred HHhccCC-CCC--CccccCC------------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---C-
Confidence 8664321 100 0011221 1234688999999999999999999999999999999997532 2
Q ss_pred ccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 237 CVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 237 ~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 132 --~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 132 --TGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp --TSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 256899999999999999999999999764
No 8
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=1.4e-22 Score=194.45 Aligned_cols=168 Identities=23% Similarity=0.358 Sum_probs=127.5
Q ss_pred cEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHh
Q 006320 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI 157 (650)
Q Consensus 78 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i 157 (650)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|+ ..++.+|+.+|.+.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-----------~~~v~~A~~~I~~~~ 70 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-----------PDRAQHAAEIITDLL 70 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-----------HHHHHHHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-----------HHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999987666788999999996 346889999988888
Q ss_pred hhcCCCCCCCCCcccccCCCC-CCCCC--CC--CCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCC
Q 006320 158 LESDGGGGFYGEEEEEYGGGG-GVGGG--GF--RGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDH 232 (650)
Q Consensus 158 ~e~~~~~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 232 (650)
.+........ .++.+ +.+.+ .. ......++++|+||..++|+||||+|++|++|+++|||+|+|...
T Consensus 71 ~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~-- 142 (174)
T 1j4w_A 71 RSVQAGNPGG------PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN-- 142 (174)
T ss_dssp HHHC-----------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC--
T ss_pred HhcccCCCCC------CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC--
Confidence 7653211000 00000 00000 00 001234688999999999999999999999999999999999752
Q ss_pred CCCCccCCCcceEEEEcCHHHHHHHHHHHHHHH
Q 006320 233 SLPRCVSMSEEIVQVVGDINNVKNAVAIISSRL 265 (650)
Q Consensus 233 ~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l 265 (650)
.+.+..+.++.|+|+|++++|.+|+.+|.++|
T Consensus 143 -~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 143 -PPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred -CCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 13344577899999999999999999999864
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.87 E-value=1.8e-22 Score=193.70 Aligned_cols=152 Identities=20% Similarity=0.313 Sum_probs=123.4
Q ss_pred ceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccCC
Q 006320 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGA 426 (650)
Q Consensus 347 ~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~~ 426 (650)
..+++|+||.+++|.|||++|++|++|+++|||+|+|.+...++.+|+|+|+|+ .+++.+|.++|..+.........
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP---PDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC---HHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHhcccCCC
Confidence 357899999999999999999999999999999999987556778899999975 56777777777666554321100
Q ss_pred --------------------CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEE
Q 006320 427 --------------------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQI 485 (650)
Q Consensus 427 --------------------~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I 485 (650)
......+++|.||.+++|+||||+|+ ||+|+++|||+|+|... .+.+..+++++|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN--PPPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC--CTTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC--CCCCCCCCceEEEE
Confidence 01124688999999999999999999 99999999999999753 23344567899999
Q ss_pred EecHHHHHHHHHHHHHHH
Q 006320 486 VGEIQAARDALVEVTTRL 503 (650)
Q Consensus 486 ~G~~~~v~~A~~~I~~~l 503 (650)
+|++++|++|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999998864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=191.79 Aligned_cols=151 Identities=26% Similarity=0.454 Sum_probs=123.8
Q ss_pred CceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHHh-hhcc
Q 006320 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTR-IVDL 424 (650)
Q Consensus 346 ~~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~-i~~~ 424 (650)
..++++|+||.+++|.|||++|++|++|+++|||+|+|++ .++.+|.|+|+|+ .+++.+|...|+.+... +...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~--~~~~~r~v~I~G~---~~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGP---TNAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEEC--CTTTEEEEEEEEE---HHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcC--CCCCceEEEEEeC---HHHHHHHHHHHHHHHHhhcccc
Confidence 4578999999999999999999999999999999999987 3677899999975 45666666666544322 2111
Q ss_pred CC----CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHH
Q 006320 425 GA----DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEV 499 (650)
Q Consensus 425 ~~----~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I 499 (650)
.. .....++++|+||.+++|+||||+|+ |++|+++|||+|+|.+ +..|. ++++.|+|+|++++|++|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~---~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT---CCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC---CCceEEEEEcCHHHHHHHHHHH
Confidence 00 12236899999999999999999999 9999999999999964 33443 5789999999999999999999
Q ss_pred HHHHHh
Q 006320 500 TTRLRS 505 (650)
Q Consensus 500 ~~~l~~ 505 (650)
.++|.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.86 E-value=8.3e-22 Score=187.23 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=120.8
Q ss_pred eEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCC--CCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccC
Q 006320 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPV--DGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLG 425 (650)
Q Consensus 348 ~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~--~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~ 425 (650)
++++|+||.+++|.|||++|++|++|+++|||+|.|.+.. ++..+|.|+|+|+ .+++.+|.++|+.+........
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD---PYKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC---HHHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997532 4567899999974 4566666666665543222100
Q ss_pred CC------CCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHH
Q 006320 426 AD------KDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVE 498 (650)
Q Consensus 426 ~~------~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~ 498 (650)
.. ....++++|.||.+++|+||||+|+ |++|+++|||+|+|.+.+ + .+.++.|+|+|++++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~ 153 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARI 153 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHHHHH
Confidence 00 0113568999999999999999999 999999999999997543 1 2457899999999999999999
Q ss_pred HHHHHHhh
Q 006320 499 VTTRLRSY 506 (650)
Q Consensus 499 I~~~l~~~ 506 (650)
|.++|++.
T Consensus 154 I~~~i~~~ 161 (164)
T 2jvz_A 154 INDLLQSL 161 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99999875
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.81 E-value=3.3e-19 Score=187.03 Aligned_cols=279 Identities=10% Similarity=0.119 Sum_probs=183.2
Q ss_pred CccEEEEEEecCcccceeecCCC--hHHHHHHHHhCCeEEEecCC-----CCCCccEEEEecCCCCCCCCCCCCccHHHH
Q 006320 76 MVTTTYRILCHDMKAGGVIGKSG--SIIKSIRQHTGAWINVHELI-----PGDEERIIEISDTRRRDPEGRMPSFSPAQE 148 (650)
Q Consensus 76 ~~~~~~rilip~~~vg~IIGk~G--~~Ik~I~~~tga~I~v~~~~-----~~~~ervi~I~G~~~~~~~~~~~~~~~a~~ 148 (650)
...+++.+.||..++..||||+| ++|++|+++|+|+|+|++.. +......|+|+|. ..++++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-----------~enVE~ 95 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-----------FGDVDR 95 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-----------HHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-----------HHHHHH
Confidence 45799999999999999999999 99999999999999999864 1235578999996 346777
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEe
Q 006320 149 ALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRIL 228 (650)
Q Consensus 149 A~~~i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~ 228 (650)
|..+|.+.+ .+++.+.+|...+.. ..-+..|.+ ++..+++|.+.
T Consensus 96 AR~~I~~l~---------------------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp 139 (376)
T 3n89_A 96 ARMLMRRNC---------------------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFV 139 (376)
T ss_dssp HHHHHHHSC---------------------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEE
T ss_pred HHHHHHhcC---------------------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeC
Confidence 777666422 234555555433222 111345555 67789999986
Q ss_pred cCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 006320 229 PRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGA 308 (650)
Q Consensus 229 ~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~ 308 (650)
+..+. .......|+|+|...+|.+|++++..++.........
T Consensus 140 ~~~~~----~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~---------------------------------- 181 (376)
T 3n89_A 140 DAPEK----NGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPA---------------------------------- 181 (376)
T ss_dssp EEC---------CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CC----------------------------------
T ss_pred Ccccc----cCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcc----------------------------------
Confidence 43110 0123567999999977777666666665543210000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCceEEEEEeecccccceecCCc--hhHHHHHHHhCCeEEEeCC
Q 006320 309 RFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESE--GIVELLQNEIGVDLKVADP 386 (650)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~vg~IIGk~G--~~Ik~l~~~tga~I~i~~~ 386 (650)
....++..|.|+.++|..|||++| ..|++|+++|||+|.|++.
T Consensus 182 -----------------------------------~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~ 226 (376)
T 3n89_A 182 -----------------------------------PENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCY 226 (376)
T ss_dssp -----------------------------------CSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC--
T ss_pred -----------------------------------cccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCC
Confidence 003568899999999999999998 5679999999999999864
Q ss_pred CCC----CCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccCCCCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcC
Q 006320 387 VDG----SDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461 (650)
Q Consensus 387 ~~~----~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~~~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tg 461 (650)
... .....|+|+|+ .+++..|.++|+.+. ++.+-+.++...+-.-.-.--. |-.+.++.+
T Consensus 227 ~d~~d~~~~~~~ItItGs---~e~V~~Ark~I~~lL------------Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~ 291 (376)
T 3n89_A 227 NNRNETRGNIYEIKVVGN---IDNVLKARRYIMDLL------------PISMCFNIKNTDMAEPSRVSDRNIHMIIDESG 291 (376)
T ss_dssp -------CCEEEEEEESC---HHHHHHHHHHHHHTS------------EEEEEEEEEGGGBC--------CBEEEECTTS
T ss_pred CCcccccCCceEEEEEeC---HHHHHHHHHHHHhhC------------CEEEEEecCCcccccccccchhHHHHHHHhcC
Confidence 221 23478999965 677788887777553 5666676665544333334444 666889999
Q ss_pred ceEEEecCCCCCCCCCCCC---eEEEEEecH
Q 006320 462 ANIQILSREEVPACVSGTD---ELVQIVGEI 489 (650)
Q Consensus 462 a~I~i~~~~~~p~~~~~~~---r~v~I~G~~ 489 (650)
+.|.|.++...|..-.++| ..|.|...-
T Consensus 292 v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e 322 (376)
T 3n89_A 292 IILKMTPSVYEPADLLSGEVPLNCASLRSKE 322 (376)
T ss_dssp CEEEEEEEEECCSSSSCCCEEEEEEEEEEEG
T ss_pred eEEEEeecCCCchhhcccccccceEEEEEEe
Confidence 9999987553342111111 237777753
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.69 E-value=1.7e-17 Score=153.43 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=100.8
Q ss_pred ceEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccCC
Q 006320 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGA 426 (650)
Q Consensus 347 ~~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~~ 426 (650)
.++.+++||.+.+|++||++|++|+.|++++|++|.... ... ..+++.+. .++.+..|.. ++ +.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~---~~~-~~~i~~~~--~p~~v~~~~~-~l-------~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD---EDT-CTFHIYGE--DQDAVKKARS-FL-------EF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE---TTT-TEEEEEES--SHHHHHHHHH-HH-------CE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC---CCc-hheeeccC--CHHHHHHHHH-hh-------hc--
Confidence 457899999999999999999999999999995443332 122 34555542 2233333322 11 11
Q ss_pred CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCc-eEEEecCCCCCCCCCCCCe--EEEEEecHHHHHHHHHHHHHH
Q 006320 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGA-NIQILSREEVPACVSGTDE--LVQIVGEIQAARDALVEVTTR 502 (650)
Q Consensus 427 ~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga-~I~i~~~~~~p~~~~~~~r--~v~I~G~~~~v~~A~~~I~~~ 502 (650)
...++.||.+++|++|||+|+ ||+|++.||+ +|+|.+.++... ..+++ .|+|+|++++|++|+.+|.++
T Consensus 67 -----~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~~~ 139 (144)
T 2qnd_A 67 -----AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLDYH 139 (144)
T ss_dssp -----EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred -----ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHHHH
Confidence 138899999999999999999 9999999997 999987543211 12333 489999999999999999999
Q ss_pred HHh
Q 006320 503 LRS 505 (650)
Q Consensus 503 l~~ 505 (650)
|.+
T Consensus 140 l~~ 142 (144)
T 2qnd_A 140 LNY 142 (144)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.67 E-value=2e-16 Score=146.25 Aligned_cols=137 Identities=21% Similarity=0.283 Sum_probs=101.3
Q ss_pred cEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHh
Q 006320 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI 157 (650)
Q Consensus 78 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i 157 (650)
.++.+|++|.+.+|.+||++|++|++|++++| |++.+.. ...+. +.+.+.. . +++..+...+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~-~i~~~~~----------p----~~v~~~~~~l 64 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCT-FHIYGED----------Q----DAVKKARSFL 64 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTE-EEEEESS----------H----HHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchh-eeeccCC----------H----HHHHHHHHhh
Confidence 46889999999999999999999999999999 5553321 23344 4444421 1 2233332222
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCc-eEEEecCCCCCCC
Q 006320 158 LESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKT-QIRILPRDHSLPR 236 (650)
Q Consensus 158 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~lp~ 236 (650)
+ ....++.||..++|++|||+|.+|+.|++.||| +|+|.+.++...
T Consensus 65 -~-------------------------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~- 111 (144)
T 2qnd_A 65 -E-------------------------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV- 111 (144)
T ss_dssp -C-------------------------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-
T ss_pred -h-------------------------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-
Confidence 1 114889999999999999999999999999997 999986433211
Q ss_pred ccCCCc--ceEEEEcCHHHHHHHHHHHHHHHhh
Q 006320 237 CVSMSE--EIVQVVGDINNVKNAVAIISSRLRE 267 (650)
Q Consensus 237 ~~~~~e--r~V~I~G~~~~V~~A~~~I~~~l~~ 267 (650)
...+ +.|+|+|++++|++|+.+|.++|..
T Consensus 112 --~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 112 --PQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp --CCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred --cccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 1233 3589999999999999999999975
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.56 E-value=4.1e-15 Score=146.23 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=111.2
Q ss_pred ccEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHH
Q 006320 77 VTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (650)
Q Consensus 77 ~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~ 156 (650)
......+.||.+++|.|||++|++|+.|+++|||+|+|+. +++.|+|+++.... ...++++|..+|...
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~------d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETE------DPLAVWKARDIVLAI 100 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCC------SHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCC------CHHHHHHHHHHHHHH
Confidence 3457799999999999999999999999999999999984 25678998864211 135688888888876
Q ss_pred hhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEc-----------cceeeeeecCCchHHHHHHhhcCceE
Q 006320 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVS-----------RMHVGCLLGKGGKIIEQMRMETKTQI 225 (650)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp-----------~~~vg~IIGk~G~~Ik~I~~~tga~I 225 (650)
+...+.+.+..... +......+.++ ...+|+||||+|++|+.|++.|||+|
T Consensus 101 ~rg~~~e~g~~ll~------------------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I 162 (219)
T 2e3u_A 101 GRGFSPERAFRLLN------------------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASV 162 (219)
T ss_dssp HTTCCHHHHGGGGS------------------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEE
T ss_pred hccCCccccceecc------------------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceE
Confidence 63221111000000 11111122222 12689999999999999999999999
Q ss_pred EEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 226 RILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 226 ~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
.|. ++.|.|.|+.++|+.|+.+|.+++...+
T Consensus 163 ~v~-------------~~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 163 SVY-------------GKTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp EEE-------------TTEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred EEC-------------CeEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 995 3579999999999999999999997654
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.56 E-value=5.5e-15 Score=145.31 Aligned_cols=143 Identities=14% Similarity=0.165 Sum_probs=106.9
Q ss_pred EEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCCC--CCCcchHHHHHHHHHHHh--hhc-
Q 006320 349 VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEG--PDDELFPAQEALLHIQTR--IVD- 423 (650)
Q Consensus 349 ~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~g--~~~~~~~a~~ai~~i~~~--i~~- 423 (650)
..++.||.++++.|||++|++|+.|+++|||+|.+.. +++.|+|.++.. ..+.+.+|.+.|..+..- ...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 5689999999999999999999999999999999963 357789987542 245677777777665410 000
Q ss_pred -cCCCCCCceEEEEeec-----------CCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHH
Q 006320 424 -LGADKDNIITTRLLVP-----------SSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQ 490 (650)
Q Consensus 424 -~~~~~~~~~~~~l~Vp-----------~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~ 490 (650)
...+ +......+.++ +..+|+||||+|+ |+.|++.|||+|.|. ++.|+|.|+++
T Consensus 110 ~~ll~-dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G~~~ 176 (219)
T 2e3u_A 110 FRLLN-EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIGNPI 176 (219)
T ss_dssp GGGGS-TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEECHH
T ss_pred ceecc-CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEeCHH
Confidence 0001 11111122222 2368999999999 999999999999884 35699999999
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 006320 491 AARDALVEVTTRLRSYLYR 509 (650)
Q Consensus 491 ~v~~A~~~I~~~l~~~~~~ 509 (650)
+++.|..+|.++|......
T Consensus 177 ~i~~A~~~i~~li~g~~~~ 195 (219)
T 2e3u_A 177 QIEIAKTAIEKLARGSPHG 195 (219)
T ss_dssp HHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCcH
Confidence 9999999999999765433
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.40 E-value=1.6e-13 Score=111.56 Aligned_cols=69 Identities=26% Similarity=0.500 Sum_probs=63.1
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 505 (650)
..++++|+||.+.+|.||||||+ ||+|+++|||+|+|.+. ...+|+|+|+|+++++++|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999 99999999999999743 13589999999999999999999999986
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.37 E-value=6.3e-13 Score=108.05 Aligned_cols=71 Identities=28% Similarity=0.499 Sum_probs=64.5
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. ...+|.|+|+|++++|.+|+.+|.++|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999999999742 146899999999999999999999999863
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=9.8e-13 Score=107.90 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=62.7
Q ss_pred ceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 006320 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (650)
Q Consensus 431 ~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 505 (650)
..+++|.||.+.+|+|||++|+ |++|+++|||+|+|.+.++. +..+.++.|+|+|+++++++|+.+|.++|++
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999 99999999999999764321 1235689999999999999999999998764
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=1.1e-12 Score=107.66 Aligned_cols=74 Identities=28% Similarity=0.402 Sum_probs=64.8
Q ss_pred cEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Q 006320 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (650)
Q Consensus 191 ~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 267 (650)
.++.+|+||..++|+||||+|++|++|+++|||+|+|.+..+..|. +.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~---~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT---CCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC---CceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999864333343 6789999999999999999999998764
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.33 E-value=2e-12 Score=107.67 Aligned_cols=72 Identities=25% Similarity=0.513 Sum_probs=64.4
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
..++.+|.||.+.+|+||||+|+ |++|+++|||+|+|.. ..| .++++.|+|+|++++|++|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999 9999999999999963 222 356899999999999999999999999876
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=108.71 Aligned_cols=72 Identities=32% Similarity=0.521 Sum_probs=64.3
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
..++.+|.||.+++|+|||+||+ |++|+++|||+|+|.. . ++.++++.|+|+|+++++++|+.+|.++|++.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--P---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--C---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--C---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999 9999999999999964 2 23467899999999999999999999998764
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.5e-12 Score=107.04 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=65.4
Q ss_pred CccEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHH
Q 006320 76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHD 155 (650)
Q Consensus 76 ~~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~ 155 (650)
...++++|+||.+++|.||||+|++|++|+++|||+|+|++..++..+|+|+|+|+ ..++++|+.+|.+
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-----------~~~v~~A~~~I~~ 71 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-----------AASISLAQYLINA 71 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-----------HHHHHHHHHHHHH
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-----------HHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999998777889999999996 3578899999998
Q ss_pred Hhhhc
Q 006320 156 RILES 160 (650)
Q Consensus 156 ~i~e~ 160 (650)
.+.+.
T Consensus 72 ~i~~~ 76 (82)
T 1wvn_A 72 RLSSE 76 (82)
T ss_dssp HTC--
T ss_pred HHHhh
Confidence 88654
No 24
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=3.8e-12 Score=122.04 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=104.4
Q ss_pred EEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCC--CCCCcchHHHHHHHHHHHhhh--ccC
Q 006320 350 FRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEE--GPDDELFPAQEALLHIQTRIV--DLG 425 (650)
Q Consensus 350 ~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~--g~~~~~~~a~~ai~~i~~~i~--~~~ 425 (650)
+++.||...++.|||++|++++.|++.+|++|.+.. .++.++|..+. +.+..+.+|.+.|..+..-.. +..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~ 80 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAF 80 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHG
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhh
Confidence 689999999999999999999999999999999964 46777887432 334567778777765443110 000
Q ss_pred CCCCCceEEE-Eeec----------CCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHH
Q 006320 426 ADKDNIITTR-LLVP----------SSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAAR 493 (650)
Q Consensus 426 ~~~~~~~~~~-l~Vp----------~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~ 493 (650)
.-.++.+... +.++ ....|+||||+|. |+.|++.|||+|.|. ++.|.|.|++++++
T Consensus 81 ~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~~~~i~ 148 (191)
T 1tua_A 81 RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGDYERAM 148 (191)
T ss_dssp GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEEHHHHH
T ss_pred hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeChHHHH
Confidence 0001122222 3233 2468999999999 999999999999884 34799999999999
Q ss_pred HHHHHHHHHHHhh
Q 006320 494 DALVEVTTRLRSY 506 (650)
Q Consensus 494 ~A~~~I~~~l~~~ 506 (650)
.|...|..++...
T Consensus 149 ~Ar~~i~~li~g~ 161 (191)
T 1tua_A 149 AAKQAIEMLAEGR 161 (191)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998654
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=2.3e-12 Score=123.57 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=109.0
Q ss_pred EEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHhhh
Q 006320 80 TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILE 159 (650)
Q Consensus 80 ~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i~e 159 (650)
.++++||...+|.|||++|++++.|+++++++|+++. .++.|+|..+.+.. ....+++|..+|......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~------dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGI------PPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTS------CHHHHHHHHHHHHHHHHT
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCC------CHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999974 47788887543211 245678888888665543
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEE-EEEEc----------cceeeeeecCCchHHHHHHhhcCceEEEe
Q 006320 160 SDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT-RMVVS----------RMHVGCLLGKGGKIIEQMRMETKTQIRIL 228 (650)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~Vp----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~ 228 (650)
...+..+ ...++...+ .+.++ ..+.|+||||+|.+|+.|++.|||+|.|.
T Consensus 74 f~~e~A~-------------------~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~ 134 (191)
T 1tua_A 74 FPPEKAF-------------------RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp CCHHHHG-------------------GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred CCHHHhh-------------------hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc
Confidence 2211100 000112223 33343 23589999999999999999999999995
Q ss_pred cCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 229 PRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 229 ~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
+..|.|.|+.++++.|...|..++...
T Consensus 135 -------------~~~v~i~G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 135 -------------EYEVAIIGDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp -------------SSEEEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred -------------CCEEEEEeChHHHHHHHHHHHHHHcCC
Confidence 247999999999999999999999754
No 26
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.30 E-value=4.7e-12 Score=105.35 Aligned_cols=73 Identities=23% Similarity=0.496 Sum_probs=65.9
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
..++.+|+||..++|.||||+|++|++|+++|||+|+|.. ..| ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~---~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC---TTS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC---CCC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999963 123 267899999999999999999999999875
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=105.36 Aligned_cols=73 Identities=21% Similarity=0.444 Sum_probs=65.7
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
..++.+|+||..++|+|||++|++|++|+++|||+|+|.. ..+ .+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~---~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN---PVE---GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC---CCT---TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC---CCC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 4678999999999999999999999999999999999974 122 377999999999999999999999999763
No 28
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=2.3e-12 Score=108.49 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=66.4
Q ss_pred EEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 192 ~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
++.+|+||..++|+|||++|++|++|+++|||+|+|....+..|. +.++.|+|+|++++|.+|+.+|.+++.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g---~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT---SCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999864333343 678999999999999999999999998753
No 29
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=3.7e-12 Score=106.03 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=64.8
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
..++.+|+||..++|+||||+|++|++|+++|||+|+|... +....++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~------~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP------VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC------CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC------CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999742 22367999999999999999999999999876
No 30
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=2.2e-12 Score=108.71 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=66.2
Q ss_pred eEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhhhc
Q 006320 432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRD 510 (650)
Q Consensus 432 ~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 510 (650)
.+++|.||.+.+|+|||+||+ |++|+++|||+|+|.+.++. +..++++.|+|+|++++++.|+.+|.++|.+...+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 578999999999999999999 99999999999999754321 123578999999999999999999999998865543
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.28 E-value=5.7e-12 Score=105.62 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=63.5
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 505 (650)
...+.+|.||.+.+|+||||+|+ ||+|+++|||+|+|...... ....+|.|+|+|+++++++|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999 99999999999999753221 235788999999999999999999998864
No 32
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.28 E-value=7.1e-12 Score=106.59 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=66.7
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.+|+||..++|+||||+|++|++|+++|||+|+|.... + ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999997421 2 256899999999999999999999999885
No 33
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=107.37 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=62.5
Q ss_pred CCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 428 KDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 428 ~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
.....+++|.||.+.+|+||||+|+ ||+|+++|||+|+|++.+ ++++|+|+|++++|++|+.+|.+++...
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 3456889999999999999999999 999999999999996432 3678999999999999999999976654
No 34
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.28 E-value=3.8e-12 Score=107.59 Aligned_cols=74 Identities=24% Similarity=0.519 Sum_probs=66.8
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.+|.||..+++.||||+|++|++|+++|||+|+|.. ..| ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~---~~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS---CCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC---CCC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999963 123 367899999999999999999999999875
No 35
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=110.50 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=63.4
Q ss_pred eEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 432 ~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
.+++|+||.+++|+||||+|+ ||+|+++|||+|+|.... .| ....++++|+|+|++++|++|+.+|.++|++.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999 999999999999997432 22 22356799999999999999999999998876
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=8e-12 Score=106.73 Aligned_cols=76 Identities=16% Similarity=0.378 Sum_probs=66.9
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.+|+||..++++||||+|++|++|+++|||+|+|..... + ....+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~--~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP--Q--NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC--C--SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC--C--CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 57789999999999999999999999999999999999975321 1 1246899999999999999999999999875
No 37
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.7e-12 Score=105.84 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=63.3
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 267 (650)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|... .+++.|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999743 2368999999999999999999998765
No 38
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.24 E-value=1.5e-11 Score=104.67 Aligned_cols=73 Identities=25% Similarity=0.236 Sum_probs=65.6
Q ss_pred ccEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHH
Q 006320 77 VTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (650)
Q Consensus 77 ~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~ 156 (650)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++..+++.+|+|+|+|+ ..++++|..+|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-----------~e~v~~A~~~I~~~ 81 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-----------PESVQSAKRLLDQI 81 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-----------HHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-----------HHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999998767788999999996 34788999999888
Q ss_pred hhhc
Q 006320 157 ILES 160 (650)
Q Consensus 157 i~e~ 160 (650)
+.+.
T Consensus 82 i~~~ 85 (92)
T 1x4n_A 82 VEKG 85 (92)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8664
No 39
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=1.2e-11 Score=105.70 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=67.1
Q ss_pred CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 006320 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (650)
Q Consensus 427 ~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 505 (650)
+.++.++.+|.||.++++.|||+||+ |++|+++|||+|+|+... ..+++.|+|+|.+++|++|+.+|..++++
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999 999999999999996432 12467899999999999999999999998
Q ss_pred hhh
Q 006320 506 YLY 508 (650)
Q Consensus 506 ~~~ 508 (650)
+..
T Consensus 86 ~~~ 88 (95)
T 2ctm_A 86 YLA 88 (95)
T ss_dssp HHT
T ss_pred HHH
Confidence 854
No 40
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.24 E-value=6.7e-12 Score=106.09 Aligned_cols=72 Identities=35% Similarity=0.534 Sum_probs=65.8
Q ss_pred cEEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHh
Q 006320 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI 157 (650)
Q Consensus 78 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i 157 (650)
.++++|+||.+++|.||||+|++|++|+++|||+|+|++..+++.+|+|+|+|+ .+++++|..+|.+.+
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-----------~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-----------QDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-----------HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-----------HHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998777889999999997 347889999999888
Q ss_pred hhc
Q 006320 158 LES 160 (650)
Q Consensus 158 ~e~ 160 (650)
.+.
T Consensus 82 ~e~ 84 (89)
T 1j5k_A 82 KQY 84 (89)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 41
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.23 E-value=5.7e-12 Score=107.65 Aligned_cols=75 Identities=17% Similarity=0.391 Sum_probs=65.3
Q ss_pred CCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 429 ~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
...++.+|+||.+.+|+||||+|+ ||+|+++|||+|+|..... +. ..+++.|+|+|++++|++|+.+|.++|++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QN--TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CS--SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-CC--CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999 9999999999999974322 11 246899999999999999999999999875
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.22 E-value=1.7e-11 Score=106.77 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=65.4
Q ss_pred CCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhh
Q 006320 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507 (650)
Q Consensus 429 ~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 507 (650)
..+.+.+|.||.+.+|+||||+|+ ||+|+++|||+|+|....+ .+ ..+++.|+|+|+.+++++|+.+|.+++++..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE--GT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC--CS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC--CC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 456889999999999999999999 9999999999999975322 11 2358899999999999999999999997654
No 43
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=108.25 Aligned_cols=73 Identities=14% Similarity=0.296 Sum_probs=64.2
Q ss_pred EEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 193 ~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
+++|+||.+++++||||+|++|++|+++|||+|+|.... .+ .....++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~--~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL--PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC--CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc--CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999997532 12 12356899999999999999999999999875
No 44
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=107.24 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=62.3
Q ss_pred ceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 431 ~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
..+++|+||.+.+++||||+|+ ||+|+++|||+|+|.+.+ + ...+|+|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999 999999999999997432 1 246889999999999999999999999886
No 45
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=100.24 Aligned_cols=75 Identities=20% Similarity=0.410 Sum_probs=65.0
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 267 (650)
......+|.||..++|+||||+|++|++|+++|||+|.|.... .+ ....+|.|+|+|++++|++|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~--~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG--SQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSS--CS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCC--CC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999997521 11 236789999999999999999999998864
No 46
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=2.4e-11 Score=103.74 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 006320 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (650)
Q Consensus 427 ~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 505 (650)
..+..++.+|.||.+.+|.|||+||+ ||+|+++|||+|+|++.+ +.++.|+|+|+++++++|+.+|.+++++
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 34567999999999999999999999 999999999999886422 2356899999999999999999999988
Q ss_pred hh
Q 006320 506 YL 507 (650)
Q Consensus 506 ~~ 507 (650)
..
T Consensus 85 ~~ 86 (94)
T 2cte_A 85 QD 86 (94)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 47
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=105.73 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=63.6
Q ss_pred EEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 192 ~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
.+++|+||.+++++||||+|++|++|+++|+|+|+|.+.+ + ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999997422 2 256899999999999999999999999875
No 48
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=6.2e-11 Score=101.66 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=63.6
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 506 (650)
...+++|.||.+.|+.|||+||+ |++|+++|||+|+|+...+ | ...++.|+|+|..+++++|+.+|..++++.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 9999999999999975332 2 235788999999999999999999998764
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.15 E-value=4.4e-11 Score=104.11 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=66.3
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
..++.+|+||..++|+||||+|++|++|+++|||+|+|..... .+ ...++.|+|+|+.++|++|+.+|.+++.+.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~---~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC---CS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC---CC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 5678999999999999999999999999999999999975321 11 2468999999999999999999999998764
No 50
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.12 E-value=4.4e-11 Score=96.55 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=58.1
Q ss_pred ceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHH
Q 006320 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRL 503 (650)
Q Consensus 431 ~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 503 (650)
..+.+|.||.+.+|.|||+||+ |++|+++|||+|+|++.. +.++.|+|+|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999 999999999999996432 24678999999999999999998753
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.09 E-value=6.5e-11 Score=95.50 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=60.3
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHH
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRL 265 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l 265 (650)
...+..|.||..+++.|||++|++|++|+++|||+|+|.... ..++.|+|+|..++|++|+.+|..++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999997421 25689999999999999999998753
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=9.1e-11 Score=100.16 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
+..++..|.||..+++.|||++|++|++|+++|||+|+|....+ ..++.|+|+|..++|++|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-------PDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-------SCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-------CCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999964211 34679999999999999999999999875
Q ss_pred c
Q 006320 269 Q 269 (650)
Q Consensus 269 ~ 269 (650)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.3e-10 Score=99.64 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=64.8
Q ss_pred CcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 190 ~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.|.||..+++.|||++|++|++|+++|||+|+|....+ +. ..++.|+|+|..++|.+|+.+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GN---QPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CS---SCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CC---CCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999975321 21 36789999999999999999999999774
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=8.8e-11 Score=100.21 Aligned_cols=73 Identities=16% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...++.+|.||..+++.|||++|++|++|+++|||+|+|.+.+ ..++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999999999999996421 23579999999999999999999999876
Q ss_pred c
Q 006320 269 Q 269 (650)
Q Consensus 269 ~ 269 (650)
.
T Consensus 86 ~ 86 (94)
T 2cte_A 86 D 86 (94)
T ss_dssp H
T ss_pred c
Confidence 4
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=2.1e-10 Score=99.60 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=62.4
Q ss_pred CceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhh
Q 006320 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507 (650)
Q Consensus 430 ~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 507 (650)
.+.+..|.||.+.+|.|||+||+ |++|+++|||+|+|.... +..+.|+|+|+.+++++|+.+|.+++++..
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 36889999999999999999999 999999999999996432 124589999999999999999999988764
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=3.9e-10 Score=97.43 Aligned_cols=68 Identities=12% Similarity=0.258 Sum_probs=60.2
Q ss_pred ceEEEEeecCCcceeeecCCCc-hhhhhhh-cCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhh
Q 006320 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRS-TGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLY 508 (650)
Q Consensus 431 ~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~-Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 508 (650)
.++.+|.||+.+|++|||++|+ |++|+++ ++++|+|+. .++.|+|+|+++.|++|..+|..++++...
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999 9999996 699998863 245899999999999999999999987643
No 57
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=6.2e-10 Score=96.63 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=62.3
Q ss_pred cEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 191 ~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
.++..|.||..+++.|||++|++|++|+++|||+|+|...+ ...+.|+|+|..++|++|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE--------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT--------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC--------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47899999999999999999999999999999999997421 23468999999999999999999998764
No 58
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=5.4e-10 Score=95.19 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhc-CceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHH
Q 006320 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRST-GANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLR 504 (650)
Q Consensus 427 ~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~T-ga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~ 504 (650)
+.++.++..|.||..+|+.|||+||+ |++|+++| ||+|+|+... +..+.|+|.|+.++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999 99999999 9999986322 235679999999999999999999998
Q ss_pred hh
Q 006320 505 SY 506 (650)
Q Consensus 505 ~~ 506 (650)
+.
T Consensus 85 e~ 86 (95)
T 2ctj_A 85 EK 86 (95)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=2.4e-09 Score=91.19 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhc-CceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMET-KTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 267 (650)
++.++..|.||..+++.|||++|++|++|+++| ||+|+|.... +..+.|+|.|..++|++|+.+|.+++.+
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g--------~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG--------SGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT--------TTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC--------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 567789999999999999999999999999999 9999996421 3467899999999999999999999987
Q ss_pred c
Q 006320 268 S 268 (650)
Q Consensus 268 ~ 268 (650)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 5
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=4.2e-09 Score=90.91 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=61.3
Q ss_pred cEEEEEEEccceeeeeecCCchHHHHHHhh-cCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhcc
Q 006320 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRME-TKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (650)
Q Consensus 191 ~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 269 (650)
.++.+|.||..+|++|||++|++|++|+++ ++++|.|+. .++.|+|+|+++.|.+|+.+|..++.+..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 589999852 35689999999999999999999998754
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.53 E-value=6.3e-08 Score=80.99 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCceEEEEeecCCcceeeecCCCc-hhhhhhhcCce-EEEecCCCCCCCCCCCCeEEEEEe-cHHHHHHHHHHHHHHHHh
Q 006320 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGAN-IQILSREEVPACVSGTDELVQIVG-EIQAARDALVEVTTRLRS 505 (650)
Q Consensus 429 ~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~-I~i~~~~~~p~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~~ 505 (650)
...+...|.||.+.+|.+||+||+ |++|+++|||+ |.|. +++..|+|.| +.+++++|+.+|..+...
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~----------eddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD----------EDTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE----------cCCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 457889999999999999999999 99999999998 9884 1357899999 899999999887655444
Q ss_pred h
Q 006320 506 Y 506 (650)
Q Consensus 506 ~ 506 (650)
+
T Consensus 82 ~ 82 (91)
T 2cpq_A 82 I 82 (91)
T ss_dssp C
T ss_pred E
Confidence 4
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=1e-07 Score=79.66 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=58.1
Q ss_pred CCcEEEEEEEccceeeeeecCCchHHHHHHhhcCce-EEEecCCCCCCCccCCCcceEEEEc-CHHHHHHHHHHHHHHH
Q 006320 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQ-IRILPRDHSLPRCVSMSEEIVQVVG-DINNVKNAVAIISSRL 265 (650)
Q Consensus 189 ~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~lp~~~~~~er~V~I~G-~~~~V~~A~~~I~~~l 265 (650)
...+...|.||...++.+||++|++|++|+++||++ |.|.. ++..|+|.| +.+++++|+.+|..+-
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 456789999999999999999999999999999998 99962 257899999 7999999999886643
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1.9e-06 Score=75.96 Aligned_cols=74 Identities=18% Similarity=0.042 Sum_probs=57.1
Q ss_pred ccEEEEEEecCc-------ccceeecCCChHHHHHHHHhCCeEEEecCCC----------CCCccEEEEecCCCCCCCCC
Q 006320 77 VTTTYRILCHDM-------KAGGVIGKSGSIIKSIRQHTGAWINVHELIP----------GDEERIIEISDTRRRDPEGR 139 (650)
Q Consensus 77 ~~~~~rilip~~-------~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~----------~~~ervi~I~G~~~~~~~~~ 139 (650)
..+.-+|.||.+ ++|.|||++|.+||+|+++|||+|.|..... ..++-.|.|++..
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~------- 82 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPK------- 82 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESS-------
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCC-------
Confidence 468889999876 7999999999999999999999999973211 1144568888753
Q ss_pred CCCccHHHHHHHHHHHHhhhc
Q 006320 140 MPSFSPAQEALFLIHDRILES 160 (650)
Q Consensus 140 ~~~~~~a~~A~~~i~~~i~e~ 160 (650)
...+++|+.+|.+.+.+.
T Consensus 83 ---~e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 83 ---PEGLAAAKKLCENLLQTV 100 (119)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhch
Confidence 456888888888777653
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.4e-06 Score=75.36 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=59.8
Q ss_pred CcEEEEEEEccc-------eeeeeecCCchHHHHHHhhcCceEEEecCCCC-C---CCccCCCcceEEEEcC-HHHHHHH
Q 006320 190 NRVATRMVVSRM-------HVGCLLGKGGKIIEQMRMETKTQIRILPRDHS-L---PRCVSMSEEIVQVVGD-INNVKNA 257 (650)
Q Consensus 190 ~~~~~~i~Vp~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~-l---p~~~~~~er~V~I~G~-~~~V~~A 257 (650)
..++.+|.||-. +++.|||++|.+||+|+++|||+|.|..++.. + .......+-.|.|++. .+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 467888988865 68999999999999999999999999743211 0 0000123447888765 9999999
Q ss_pred HHHHHHHHhhc
Q 006320 258 VAIISSRLRES 268 (650)
Q Consensus 258 ~~~I~~~l~~~ 268 (650)
+.+|..++.+.
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999999763
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.26 E-value=2.1e-06 Score=77.27 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=62.7
Q ss_pred CCcEEEEEEEccc------eeeeeecCCchHHHHHHhhcCceEEEecCCCCC----------CCccCCCcceEEEEcC-H
Q 006320 189 GNRVATRMVVSRM------HVGCLLGKGGKIIEQMRMETKTQIRILPRDHSL----------PRCVSMSEEIVQVVGD-I 251 (650)
Q Consensus 189 ~~~~~~~i~Vp~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~l----------p~~~~~~er~V~I~G~-~ 251 (650)
...++.+|.||.. ++|.|||++|.+||+|+++|||+|.|..++... +......+-.|.|++. .
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3578999999988 788999999999999999999999997532110 0001123568889995 8
Q ss_pred HHHHHHHHHHHHHHhhc
Q 006320 252 NNVKNAVAIISSRLRES 268 (650)
Q Consensus 252 ~~V~~A~~~I~~~l~~~ 268 (650)
+++.+|+.+|..+|.+.
T Consensus 84 e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999763
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.23 E-value=2.3e-06 Score=76.96 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=60.8
Q ss_pred CceEEEEeecCC------cceeeecCCCc-hhhhhhhcCceEEEecCCCCC-----------CCCCCCCeEEEEEe-cHH
Q 006320 430 NIITTRLLVPSS------EIGCLEGRDGS-LSEMRRSTGANIQILSREEVP-----------ACVSGTDELVQIVG-EIQ 490 (650)
Q Consensus 430 ~~~~~~l~Vp~~------~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p-----------~~~~~~~r~v~I~G-~~~ 490 (650)
..++.+|.||.+ ++|.|||.+|. ||+|+++|||+|.|..+.... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 357889999988 78999999999 999999999999997643211 00112244599999 589
Q ss_pred HHHHHHHHHHHHHHhh
Q 006320 491 AARDALVEVTTRLRSY 506 (650)
Q Consensus 491 ~v~~A~~~I~~~l~~~ 506 (650)
++++|+.+|..+|...
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999764
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.93 E-value=3.3e-06 Score=76.38 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=55.0
Q ss_pred eEEEEeecCCc------ceeeecCCCc-hhhhhhhcCceEEEecCCCC------------CCCCCCCCe-EEEEEec-H-
Q 006320 432 ITTRLLVPSSE------IGCLEGRDGS-LSEMRRSTGANIQILSREEV------------PACVSGTDE-LVQIVGE-I- 489 (650)
Q Consensus 432 ~~~~l~Vp~~~------~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~------------p~~~~~~~r-~v~I~G~-~- 489 (650)
++.+|.||.+. +|.|||.+|. +|+|+++|||+|.|..+... |.++..++. -|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788888665 8999999999 99999999999999865421 111122333 4889994 3
Q ss_pred ----HHHHHHHHHHHHHHH
Q 006320 490 ----QAARDALVEVTTRLR 504 (650)
Q Consensus 490 ----~~v~~A~~~I~~~l~ 504 (650)
..+++|+++|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 378999999988886
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.76 E-value=1.8e-05 Score=71.57 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=56.0
Q ss_pred EEEEEEEccce------eeeeecCCchHHHHHHhhcCceEEEecCCCCC-----------CCccC-CCcceEEEEcC-H-
Q 006320 192 VATRMVVSRMH------VGCLLGKGGKIIEQMRMETKTQIRILPRDHSL-----------PRCVS-MSEEIVQVVGD-I- 251 (650)
Q Consensus 192 ~~~~i~Vp~~~------vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~l-----------p~~~~-~~er~V~I~G~-~- 251 (650)
++.+|.||-.. +|.|||.+|.++|+|+++|||+|.|..+.... |.... ..+-.|.|++. .
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788888654 89999999999999999999999998543211 11001 12237888885 3
Q ss_pred ----HHHHHHHHHHHHHHhh
Q 006320 252 ----NNVKNAVAIISSRLRE 267 (650)
Q Consensus 252 ----~~V~~A~~~I~~~l~~ 267 (650)
..+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 3799999999998864
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.63 E-value=4.5e-05 Score=85.95 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCc
Q 006320 144 SPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKT 223 (650)
Q Consensus 144 ~~a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga 223 (650)
..+.++...|++.+.+.-.... .+-.+| -.....+.||...++.|||+||++|+.|+++|||
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~---~~~~~~---------------ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~ 598 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPR---ASRKEN---------------GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 598 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCC---SSCCTT---------------CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhccc---------------CCeEEEEEeChhHhheeECCCChhHHHHHHHHCC
Confidence 4566666777777766543221 111122 2457889999999999999999999999999999
Q ss_pred eEEEecCCCCCCCccCCCcceEEEEcC-HHHHHHHHHHHHHHH
Q 006320 224 QIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRL 265 (650)
Q Consensus 224 ~I~i~~~~~~lp~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l 265 (650)
+|.|. ++..|.|.+. .+++++|+.+|..++
T Consensus 599 ~I~I~------------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 599 TISQV------------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEC------------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEc------------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 99995 2468999997 789999999987765
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.52 E-value=4.5e-05 Score=85.93 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhhccCC------CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCC
Q 006320 408 FPAQEALLHIQTRIVDLGA------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTD 480 (650)
Q Consensus 408 ~~a~~ai~~i~~~i~~~~~------~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~ 480 (650)
..|.++..+|++.+.+... ....+....|.||.+.++.|||+||+ ||+|+++|||+|.|. ++
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~ 605 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DE 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CC
Confidence 3455555555554443211 12346778899999999999999999 999999999999884 24
Q ss_pred eEEEEEec-HHHHHHHHHHHHHHH
Q 006320 481 ELVQIVGE-IQAARDALVEVTTRL 503 (650)
Q Consensus 481 r~v~I~G~-~~~v~~A~~~I~~~l 503 (650)
-.|.|.|. .+++++|+++|.+++
T Consensus 606 G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SEEEEEESSHHHHHHHHHHTTC--
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 57999996 688999999887654
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.18 E-value=0.00026 Score=64.38 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=73.2
Q ss_pred EEEEEEecCcccceeecCCChHHHHHHHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHhh
Q 006320 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRIL 158 (650)
Q Consensus 79 ~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i~ 158 (650)
-.+.|+++...+|..||++|+.|+.|+++.|-+|+|-+-.. + ....|.+.+.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~---d-------------------------~~~fI~naLs 87 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS---D-------------------------LERIVKNLFP 87 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS---S-------------------------HHHHHHHHST
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC---C-------------------------HHHHHHHhcC
Confidence 36778999999999999999999999999999999865211 1 0111112221
Q ss_pred hcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEe
Q 006320 159 ESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRIL 228 (650)
Q Consensus 159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~ 228 (650)
....... ..+. . +....+.+.||..+.++.|||+|.+++-...-||.+|.|.
T Consensus 88 PA~V~~V---~i~~--------------~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 88 GVKIESI---NVRE--------------R-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TSCEEEE---EEEE--------------E-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CceEEEE---EEee--------------c-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 1100000 0000 0 1345788999999999999999999999999999988875
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.16 E-value=0.00071 Score=59.93 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred EEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhh
Q 006320 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLY 508 (650)
Q Consensus 433 ~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 508 (650)
.+.+.|...+++.|+|++|+ |++|+..|+|.|+|..-+ .++.-.|+|.|.+..-..|+.+|.++..-+-.
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999 999999999999996432 13345599999999999999999998876543
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.97 E-value=0.0013 Score=58.23 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=60.3
Q ss_pred EEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcCHHHHHHHHHHHHHHHhhc
Q 006320 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (650)
Q Consensus 193 ~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 268 (650)
...+.|...+++.|+|++|+.|+.|+..|++.|+|...+. +..-.|+|.|++..-.+|+.+|..+..-.
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-------~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-------ERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-------TSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-------CCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999975321 45678999999999999999999887654
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.89 E-value=0.00035 Score=79.64 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhhhccCC------CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCC
Q 006320 408 FPAQEALLHIQTRIVDLGA------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTD 480 (650)
Q Consensus 408 ~~a~~ai~~i~~~i~~~~~------~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~ 480 (650)
..|.++..+|+..+.+... ....+....+.||.+.++.|||+||. ||+|.++|||+|.|. ++
T Consensus 540 ~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------dd 608 (726)
T 4aid_A 540 AQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DD 608 (726)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CC
Confidence 3455555555555443221 12235667889999999999999999 999999999999773 24
Q ss_pred eEEEEEec-HHHHHHHHHHHHHHHHhhhhhcccc
Q 006320 481 ELVQIVGE-IQAARDALVEVTTRLRSYLYRDFFQ 513 (650)
Q Consensus 481 r~v~I~G~-~~~v~~A~~~I~~~l~~~~~~~~~~ 513 (650)
..|.|.+. .+++++|+..|..++.+...-+.|.
T Consensus 609 G~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~ 642 (726)
T 4aid_A 609 GVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYD 642 (726)
T ss_dssp -----CCSCHHHHHHHHHC---------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEE
Confidence 45788875 8899999999999988776655443
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.87 E-value=0.00049 Score=78.44 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHhhhcCCCCCCCCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcC
Q 006320 143 FSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETK 222 (650)
Q Consensus 143 ~~~a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tg 222 (650)
+..+.++...|++.+.+.-.... .+-..|. .....+.||...++.|||+||++|+.|.++||
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r---~~~~~~a---------------p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg 600 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPR---ADVGDFA---------------PKIETINIPTDKIREVIGSGGKVIREIVATTG 600 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCC---SSCCSSC---------------CC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hhhcccC---------------CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHC
Confidence 34556666667777665432211 1112222 23677899999999999999999999999999
Q ss_pred ceEEEecCCCCCCCccCCCcceEEEEcC-HHHHHHHHHHHHHHHhhc
Q 006320 223 TQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRLRES 268 (650)
Q Consensus 223 a~I~i~~~~~~lp~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l~~~ 268 (650)
++|.|.. +..|.|.+. .+++++|+..|..++.+.
T Consensus 601 ~~idi~d------------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 601 AKVDIND------------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp -------------------------CCSCHHHHHHHHHC--------
T ss_pred CceeEEC------------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 9999852 356778775 899999999999988653
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.86 E-value=0.00049 Score=62.56 Aligned_cols=100 Identities=16% Similarity=0.330 Sum_probs=70.9
Q ss_pred eEEEEEeecccccceecCCchhHHHHHHHhCCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHH--hhhccC
Q 006320 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDLG 425 (650)
Q Consensus 348 ~~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~--~i~~~~ 425 (650)
-...+.|+...+|+.||++|++|+.|+++.|-+|.+-.-.. +. .+.+...+. ++....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~----------------d~----~~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS----------------DL----ERIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS----------------SH----HHHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC----------------CH----HHHHHHhcCCceEEEEE
Confidence 46778899999999999999999999999999998754111 10 011111000 011000
Q ss_pred C-CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEe
Q 006320 426 A-DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQIL 467 (650)
Q Consensus 426 ~-~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~ 467 (650)
- ..+....+.+.||.++.+..|||+|. ++-..+.||.+|.|.
T Consensus 96 i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 96 VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 01345678899999999999999999 999999999998774
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.29 E-value=0.024 Score=55.98 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=65.1
Q ss_pred cccceeecCCChHHHHH-HHHhCCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHhhhcCCCCCC
Q 006320 88 MKAGGVIGKSGSIIKSI-RQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGF 166 (650)
Q Consensus 88 ~~vg~IIGk~G~~Ik~I-~~~tga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i~e~~~~~~~ 166 (650)
+-+|+-||++|++|+.| ++-.|-+|+|-.-.+ + ....|...+..+......
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~---d-------------------------p~~fi~nalsPA~V~~V~ 177 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD---D-------------------------PARFVANALSPAKVVSVS 177 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS---S-------------------------HHHHHHHHTTTSCCSEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC---C-------------------------HHHHHHhccCCcceEEEE
Confidence 55899999999999999 666788888864211 1 111122222221110000
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecC
Q 006320 167 YGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPR 230 (650)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~ 230 (650)
. .+ .....+.+.||..+.++-|||+|.+++.-...||.+|.|...
T Consensus 178 i--~~-----------------~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 178 V--ID-----------------QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp E--EE-----------------TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred E--Ec-----------------CCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 0 00 112378899999999999999999999999999999999753
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.90 E-value=0.038 Score=57.61 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=66.7
Q ss_pred cccceeecCCChHHHHHHHHh-CCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHhhhcCCCCCC
Q 006320 88 MKAGGVIGKSGSIIKSIRQHT-GAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGF 166 (650)
Q Consensus 88 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i~e~~~~~~~ 166 (650)
+-+|..||++|++|+.|.++. |-+|+|-+-. + +....|...+..+......
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s---~-------------------------dp~~fi~nalsPA~V~~V~ 300 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD---D-------------------------DPARFVANALSPAKVVSVS 300 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC---S-------------------------SHHHHHHHHTTTSCCSEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC---C-------------------------CHHHHHHHhcCCcceeEEE
Confidence 568999999999999999998 8888886521 1 1111222222221110000
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecC
Q 006320 167 YGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPR 230 (650)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~ 230 (650)
. .+ +....+.+.||..+.++.|||+|.+++.....||.+|.|...
T Consensus 301 ~--~~-----------------~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 301 V--ID-----------------QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp E--EE-----------------TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred E--Ec-----------------CCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 0 00 123478999999999999999999999999999999999753
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.80 E-value=0.039 Score=57.50 Aligned_cols=97 Identities=23% Similarity=0.303 Sum_probs=64.2
Q ss_pred ccccceecCCchhHHHHHHHh-CCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccCCCCCCceEEE
Q 006320 357 DKVGRVIGESEGIVELLQNEI-GVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTR 435 (650)
Q Consensus 357 ~~vg~IIGk~G~~Ik~l~~~t-ga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~~~~~~~~~~~ 435 (650)
+-+|+.||++|++|+.|.++. |=+|.|-.-. .+...-+..|+. =.++....--.+..-.+.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s----------------~dp~~fi~nals--PA~V~~V~~~~~~~~~a~ 310 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD----------------DDPARFVANALS--PAKVVSVSVIDQTARAAR 310 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC----------------SSHHHHHHHHTT--TSCCSEEEEEETTTTEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC----------------CCHHHHHHHhcC--CcceeEEEEEcCCCcEEE
Confidence 457999999999999999998 7777764311 111000111110 000000000011245788
Q ss_pred EeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCC
Q 006320 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471 (650)
Q Consensus 436 l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~ 471 (650)
+.||..+.+..|||+|. ++-..+.||.+|.|.+..+
T Consensus 311 V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 311 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp EEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred EEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 99999999999999999 9999999999999986543
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.57 E-value=0.051 Score=53.66 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=62.5
Q ss_pred ccccceecCCchhHHHH-HHHhCCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHH--hhhccCCCCCCceE
Q 006320 357 DKVGRVIGESEGIVELL-QNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDLGADKDNIIT 433 (650)
Q Consensus 357 ~~vg~IIGk~G~~Ik~l-~~~tga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~--~i~~~~~~~~~~~~ 433 (650)
+-+|+.||++|++|+.| ++-.|-+|.|-.-. ++. .+.|...+. ++....-..+..-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s----------------~dp----~~fi~nalsPA~V~~V~i~~~~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD----------------DDP----ARFVANALSPAKVVSVSVIDQTARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC----------------SSH----HHHHHHHTTTSCCSEEEEEETTTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec----------------CCH----HHHHHhccCCcceEEEEEEcCCCcE
Confidence 44799999999999999 56667777764311 010 011111100 00000000112357
Q ss_pred EEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCC
Q 006320 434 TRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471 (650)
Q Consensus 434 ~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~ 471 (650)
+.+.||..+.+.-|||+|. |+-..+.||.+|.|.+..+
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 8899999999999999999 9999999999999986543
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.53 E-value=0.019 Score=65.66 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHhhhccCC------CCCCceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCC
Q 006320 408 FPAQEALLHIQTRIVDLGA------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTD 480 (650)
Q Consensus 408 ~~a~~ai~~i~~~i~~~~~------~~~~~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~ 480 (650)
..|.++..+|++.+.+... ....+....+.||.+.++.+||+||. |++|.++||+.|.|- .+
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-----------~d 598 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-----------DD 598 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec-----------CC
Confidence 3445555555554443211 11234567788999999999999999 999999999999773 24
Q ss_pred eEEEEEec-HHHHHHHHHHHHHHHHhhhhhccc
Q 006320 481 ELVQIVGE-IQAARDALVEVTTRLRSYLYRDFF 512 (650)
Q Consensus 481 r~v~I~G~-~~~v~~A~~~I~~~l~~~~~~~~~ 512 (650)
..|.|.+. .+.+++|++.|..++.+...-+.|
T Consensus 599 g~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~ 631 (723)
T 3cdi_A 599 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVY 631 (723)
T ss_dssp ---------------------------------
T ss_pred ccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEE
Confidence 45777664 577788888887776655444443
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.14 E-value=0.027 Score=64.41 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred EEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Q 006320 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRLRE 267 (650)
Q Consensus 192 ~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l~~ 267 (650)
....+.||...++.+||++|.+|+.|.++||+.|.|.. +..|.|.+. .+.+++|+..|..++.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 45678899999999999999999999999999998852 345677664 67788888887776644
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.70 E-value=0.18 Score=52.34 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=65.2
Q ss_pred cccceeecCCChHHHHHHHHh-CCeEEEecCCCCCCccEEEEecCCCCCCCCCCCCccHHHHHHHHHHHHhhhcCCCCCC
Q 006320 88 MKAGGVIGKSGSIIKSIRQHT-GAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGF 166 (650)
Q Consensus 88 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~ervi~I~G~~~~~~~~~~~~~~~a~~A~~~i~~~i~e~~~~~~~ 166 (650)
+-+|+.||.+|+.|+.|.++- |-+|+|-.-.+ +....|...+.........
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~----------------------------d~~~fi~nal~Pa~v~~v~ 296 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSD----------------------------DPKQLIANALAPATVIEVE 296 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS----------------------------SHHHHHHHHTCSSCCSEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCC----------------------------CHHHHHHHhcCccEEEEEE
Confidence 458999999999999999998 78888754210 1111222222111100000
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCcEEEEEEEccceeeeeecCCchHHHHHHhhcCceEEEec
Q 006320 167 YGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP 229 (650)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~ 229 (650)
. .+ +....+.+.||..+.++-|||+|.+++.-...||.+|.|..
T Consensus 297 ~--~d-----------------~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 297 I--LD-----------------KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp E--EE-----------------TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred E--Ec-----------------CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 0 00 12347899999999999999999999999999999999974
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.20 E-value=0.019 Score=65.96 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEeecCCcceeeecCCCc-hhhhhhhcCceEEEecCCCCCCCCCCCCeEEEEEec-HHHHHHHHHHHHHHH
Q 006320 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE-IQAARDALVEVTTRL 503 (650)
Q Consensus 431 ~~~~~l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 503 (650)
+....+.||.+.++-+||++|. ||+|.++||+.|.|- .+..|.|... .++.++|+..|..+.
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec-----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 4456788999999999999999 999999999999774 1445777764 567777776666654
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.58 E-value=0.11 Score=53.99 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=61.9
Q ss_pred ccccceecCCchhHHHHHHHh-CCeEEEeCCCCCCCccEEEecCCCCCCCcchHHHHHHHHHHHhhhccCCCCCCceEEE
Q 006320 357 DKVGRVIGESEGIVELLQNEI-GVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTR 435 (650)
Q Consensus 357 ~~vg~IIGk~G~~Ik~l~~~t-ga~I~i~~~~~~~~er~i~I~G~~g~~~~~~~a~~ai~~i~~~i~~~~~~~~~~~~~~ 435 (650)
+-+|+.||.+|.+|+.+.++. |-+|.+-.- + ++...-...||. =.++....-..+..-.+.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-----------s-----~d~~~fi~nal~--Pa~v~~v~~~d~~~~~~~ 306 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-----------S-----DDPKQLIANALA--PATVIEVEILDKENKAAR 306 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-----------C-----SSHHHHHHHHTC--SSCCSEEEEEETTTTEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-----------C-----CCHHHHHHHhcC--ccEEEEEEEEcCCCCEEE
Confidence 457999999999999999987 666665321 1 010000011110 000000000012345788
Q ss_pred EeecCCcceeeecCCCc-hhhhhhhcCceEEEecC
Q 006320 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSR 469 (650)
Q Consensus 436 l~Vp~~~~g~IIGkgG~-Ik~I~~~Tga~I~i~~~ 469 (650)
+.||..+.+.-|||+|. |+--.+.||.+|.|.+.
T Consensus 307 v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 307 VLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 99999999999999999 99999999999999754
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.65 E-value=0.032 Score=64.12 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=20.7
Q ss_pred EEEEEEccceeeeeecCCchHHHHHHhhcCceEEEecCCCCCCCccCCCcceEEEEcC-HHHHHHHHHHHHHHH
Q 006320 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRL 265 (650)
Q Consensus 193 ~~~i~Vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~lp~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l 265 (650)
...+.||...++.+||++|++|+.|++++|+.|.|.. +..|.|... .+..++|+..|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999852 345667664 677777877776654
No 87
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=60.73 E-value=2.5 Score=43.06 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=35.5
Q ss_pred cceEEEEecC-CcccccccCCCcchhhHHHhcCCe------EEEEEeeeEEEe
Q 006320 603 RSTLEVVLPD-YAVPKLITKSKTLLTRFSEVSLLL------HLINLFNFVKVY 648 (650)
Q Consensus 603 ~~t~~v~IP~-~~~g~vIGk~G~~I~~Ir~~SGA~------i~i~~~~~~~~~ 648 (650)
.+...+.|.. +.-+-|||++|+.|++|...+-.. ..++++-||||-
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~ 291 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVV 291 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEEC
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEC
Confidence 4677888988 678889999999999887644332 456788889983
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=53.36 E-value=5.3 Score=36.28 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=25.9
Q ss_pred EEEEEecCcccceeecCCChHHHHHHHHhCCe
Q 006320 80 TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAW 111 (650)
Q Consensus 80 ~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~ 111 (650)
++.|.+.....|.||||.|.++++|+--+...
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH
Confidence 45566678889999999999999999876433
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=51.17 E-value=5.2 Score=33.08 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.9
Q ss_pred EEEEEecCcccceeecCCChHHHHHHHH
Q 006320 80 TYRILCHDMKAGGVIGKSGSIIKSIRQH 107 (650)
Q Consensus 80 ~~rilip~~~vg~IIGk~G~~Ik~I~~~ 107 (650)
..++.+...+-|.|||++|+.|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567778888999999999999998876
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=49.75 E-value=8.2 Score=34.99 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=25.5
Q ss_pred EEEEEeecccccceecCCchhHHHHHHHhC
Q 006320 349 VFRMLCPIDKVGRVIGESEGIVELLQNEIG 378 (650)
Q Consensus 349 ~~~i~vp~~~vg~IIGk~G~~Ik~l~~~tg 378 (650)
++.+.+..+..|.||||.|.|++.||--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 566777889999999999999999986653
No 91
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=43.51 E-value=6.5 Score=39.82 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=33.4
Q ss_pred ceEEEEecC-CcccccccCCCcchhhHHH--------hcCCeEEEEEeeeEEEe
Q 006320 604 STLEVVLPD-YAVPKLITKSKTLLTRFSE--------VSLLLHLINLFNFVKVY 648 (650)
Q Consensus 604 ~t~~v~IP~-~~~g~vIGk~G~~I~~Ir~--------~SGA~i~i~~~~~~~~~ 648 (650)
+-..+.|.. +..+.|||++|+.|++|.. +.| ..++++-||||-
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~--~~v~l~l~vkv~ 281 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG--KKVYLDLEVKVY 281 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT--SEEEEEEEEEEC
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC--CceEEEEEEEEC
Confidence 456677776 7889999999999998765 455 456788899983
No 92
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=37.34 E-value=11 Score=31.17 Aligned_cols=40 Identities=3% Similarity=-0.060 Sum_probs=30.7
Q ss_pred ceEEEEecCCcccccccCCCcchhhHHH----hcC---CeEEEEEee
Q 006320 604 STLEVVLPDYAVPKLITKSKTLLTRFSE----VSL---LLHLINLFN 643 (650)
Q Consensus 604 ~t~~v~IP~~~~g~vIGk~G~~I~~Ir~----~SG---A~i~i~~~~ 643 (650)
..++|+|-...-|.|||++|..|..|++ ..| -.|.||..-
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~e 81 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEK 81 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEE
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 4678888889999999999999998876 343 456666543
No 93
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=30.57 E-value=1.2e+02 Score=22.90 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCeEEEEEecHHHHHHHHHHHHHHHHhhh
Q 006320 479 TDELVQIVGEIQAARDALVEVTTRLRSYL 507 (650)
Q Consensus 479 ~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 507 (650)
+|-.|.|+|.|++|++-+..-.++|....
T Consensus 40 ndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 45569999999999998888888876653
No 94
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=24.26 E-value=21 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=16.8
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC
Q 006320 4 SRSKRNYYYDHQDYDGDTMGRTKPRY 29 (650)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (650)
..+-|-|||+|... +..|..||.
T Consensus 17 ~~~Gr~Yy~nh~t~---~ttW~~P~~ 39 (40)
T 2ysg_A 17 TADGIKYFINHVTQ---TTSWIHPVM 39 (40)
T ss_dssp CSSSCEEEEESSSC---CEECCCCCC
T ss_pred cCCCCEEEEECCCC---cCcCCCCCC
Confidence 45688999998664 566888774
No 95
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.19 E-value=28 Score=33.17 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=22.7
Q ss_pred EEEEecCcccceeecCCChHHHHHHHH
Q 006320 81 YRILCHDMKAGGVIGKSGSIIKSIRQH 107 (650)
Q Consensus 81 ~rilip~~~vg~IIGk~G~~Ik~I~~~ 107 (650)
.++.|...+-|.|||++|+.|++|+.+
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 466677788899999999999998765
No 96
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=22.06 E-value=29 Score=33.73 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.8
Q ss_pred EEEEEecCcccceeecCCChHHHHHHHH
Q 006320 80 TYRILCHDMKAGGVIGKSGSIIKSIRQH 107 (650)
Q Consensus 80 ~~rilip~~~vg~IIGk~G~~Ik~I~~~ 107 (650)
.+++.|...+-|.|||++|+.|++|+.+
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567778888999999999999988766
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=20.60 E-value=29 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.5
Q ss_pred EEEEecCcccceeecCCChHHHHHHHHhCCeEE
Q 006320 81 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWIN 113 (650)
Q Consensus 81 ~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~ 113 (650)
+.|.+.....|.|||+.|.++..||.-+...++
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 445556778999999999999999998875544
No 98
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=20.56 E-value=38 Score=32.99 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=24.1
Q ss_pred EEEEEecCcccceeecCCChHHHHHHHH
Q 006320 80 TYRILCHDMKAGGVIGKSGSIIKSIRQH 107 (650)
Q Consensus 80 ~~rilip~~~vg~IIGk~G~~Ik~I~~~ 107 (650)
.+++.|...+-|.|||++|+.|++|+.+
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4577778888999999999999998876
Done!