BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006323
         (650 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AM1|A Chain A, Crystal Structure Of The Marine Crustacean Decapod Shrimp
           (Litopenaeus Vannamei) Arginine Kinase In The Absence Of
           Substrate Or Ligands
          Length = 356

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 147 NSSVNDSP------GSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVP 200
           NS VN  P       +RVR GR M+G+P  P   T+     +     S+      E+K  
Sbjct: 108 NSFVNVDPEGKFVISTRVRCGRSMQGYPFNP-MLTESQYKEMEAKVSSTLSSLEGELKGT 166

Query: 201 TKPSSETSEGVDDKPIEE---MKEIDLLDETSNGAQ 233
             P +  S+ V  K I++    KE D   + +N  +
Sbjct: 167 YYPLTGMSKEVQQKLIDDHFLFKEGDRFLQAANAMR 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,172,460
Number of Sequences: 62578
Number of extensions: 737751
Number of successful extensions: 1322
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 11
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)