Query 006323
Match_columns 650
No_of_seqs 46 out of 48
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 21:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01843 DIL: DIL domain; Int 92.9 0.025 5.4E-07 48.8 -0.4 91 510-644 1-91 (105)
2 PF02007 MtrH: Tetrahydrometha 56.0 7.7 0.00017 41.2 2.2 46 539-585 183-241 (296)
3 PF07334 IFP_35_N: Interferon- 50.9 22 0.00048 31.4 3.9 25 255-279 4-28 (76)
4 PRK14127 cell division protein 36.6 92 0.002 28.9 5.7 56 254-314 40-103 (109)
5 TIGR03114 cas_csf1 CRISPR-asso 36.3 23 0.00049 36.0 1.9 31 494-524 28-72 (202)
6 PF05377 FlaC_arch: Flagella a 25.2 99 0.0022 26.0 3.6 33 254-290 17-49 (55)
7 PRK14143 heat shock protein Gr 25.2 2.6E+02 0.0057 28.9 7.3 20 257-276 66-85 (238)
8 PF08181 DegQ: DegQ (SacQ) fam 24.3 1.1E+02 0.0024 24.9 3.6 23 257-279 3-25 (46)
9 PF01004 Flavi_M: Flavivirus e 23.3 56 0.0012 28.7 1.9 22 411-432 16-37 (75)
10 PF15249 GLTSCR1: Glioma tumor 22.7 42 0.00091 30.2 1.1 54 484-537 24-89 (109)
11 PF14389 Lzipper-MIP1: Leucine 21.6 2.3E+02 0.0049 25.0 5.3 49 257-305 7-59 (88)
12 PRK00979 tetrahydromethanopter 21.3 55 0.0012 35.0 1.8 61 511-580 159-240 (308)
13 PF14282 FlxA: FlxA-like prote 20.7 1.1E+02 0.0025 27.5 3.4 23 257-279 18-40 (106)
No 1
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=92.94 E-value=0.025 Score=48.82 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCC
Q 006323 510 MVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPK 589 (650)
Q Consensus 510 lVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~ 589 (650)
+++.|..--+++-.||.+|-... -.++-.|+|+|.-|..-..|... -|+...
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~-----------------------~~~~~~g~qi~~nls~l~~W~~~-~~l~~~---- 52 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRK-----------------------YCSWSKGVQIRYNLSELEDWARS-HGLEEA---- 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS------------------------B-HHHHHHHHHHHHHHHHCCCC-TTSTTH----
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC-----------------------ccccccHHHHHHHHHHHHHHHHh-cccchh----
Confidence 46788889999999999985432 17899999999999999999765 222111
Q ss_pred ccCCCCCCCCCCCCCCCCccccchhhhhcccccchhhccchhhhhhhcccccccc
Q 006323 590 EDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEMNSVQMQSQ 644 (650)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCP~~~~~~ 644 (650)
....|.-|..+++||++||..+.|-.+++++||..-..|
T Consensus 53 ----------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Q 91 (105)
T PF01843_consen 53 ----------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQ 91 (105)
T ss_dssp -----------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHH
T ss_pred ----------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHH
Confidence 135888999999999999999999999999999765444
No 2
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=55.98 E-value=7.7 Score=41.20 Aligned_cols=46 Identities=22% Similarity=0.685 Sum_probs=35.3
Q ss_pred CCCCCcCCCccccccCCC-------------cccccccccccchhchHHHHHhhcCCCCC
Q 006323 539 PVSDPILDSKVLPIPAGD-------------LSFGSGAQLKNSVGNWSRWLTDMFGMDTD 585 (650)
Q Consensus 539 PiSDPI~DskVLPIPaG~-------------lSFGaGAQLKNaIGnWSRwLtDlfGid~~ 585 (650)
=|..||+|+.|+|+|+|. +.+=.|.-.-|+...| .||.++.+-..+
T Consensus 183 GI~~~LvD~~v~plgsg~g~s~r~~~~vK~~~G~P~G~a~hN~~s~W-~wlr~~~k~~~~ 241 (296)
T PF02007_consen 183 GIENPLVDTAVTPLGSGAGISIRAIFAVKAKFGYPVGCAIHNAPSAW-KWLREYKKKEGE 241 (296)
T ss_pred CCcceeecccccCCcccchHHHHHHHHHHHHhCCCcccccccchhHH-HHHHHhcccccc
Confidence 467899999999999975 2222455567999999 999998765543
No 3
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.94 E-value=22 Score=31.38 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHH
Q 006323 255 NLNQKIEEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 255 ~~~~k~eele~rie~LE~ELREaAA 279 (650)
.+..++.+|+.+|.+||.||.+...
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778899999999999999766
No 4
>PRK14127 cell division protein GpsB; Provisional
Probab=36.64 E-value=92 Score=28.94 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.3
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCch--------hhhhhHHHHHHhc
Q 006323 254 ANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSP--------ARRLSRIYIHACK 314 (650)
Q Consensus 254 ~~~~~k~eele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtP--------ARRLSRlYiHAcK 314 (650)
..+..++.+|+.++..|+++|.+.-+ .++-|.-..++ ++.-.+ .+|||||=-|-+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~-~~~~~~~~~~~----~~~~~~~~~tn~DiLKRls~LEk~VFg 103 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTK-QVSVGASSSSV----ATTQPSSSATNYDILKRLSNLEKHVFG 103 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc----cccCCCCCcchHHHHHHHHHHHHHHhc
Confidence 45566777788888888888877655 44433322221 111111 5899998777654
No 5
>TIGR03114 cas_csf1 CRISPR-associated protein, Csf1 family. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf1 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies closest to the repeats.
Probab=36.29 E-value=23 Score=36.02 Aligned_cols=31 Identities=29% Similarity=0.655 Sum_probs=25.6
Q ss_pred CCCCCCCcc-chHHHHHHHHHHH-------------HHHHHHHHH
Q 006323 494 VRAGGHECG-CLPVLGRMVMEQC-------------VARLDVAMF 524 (650)
Q Consensus 494 vRAgGHECG-CLPVLaRlVMEQC-------------VaRLDVAMF 524 (650)
-|.|+|-|| |+|++++-.|.+- +.+-|||-|
T Consensus 28 ~r~g~~vCG~C~al~skd~mq~y~ksi~~e~Gvf~~~sn~~va~~ 72 (202)
T TIGR03114 28 ARGGGMVCGHCTALMSKDMLQAYAKSIFSEGGVFPFASNVDVARG 72 (202)
T ss_pred ccCCCeeecccHHHhhHHHHHHHhhheeecCcccccccHHHHHHH
Confidence 378999999 9999999988874 567788765
No 6
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.18 E-value=99 Score=26.04 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=25.9
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 006323 254 ANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPE 290 (650)
Q Consensus 254 ~~~~~k~eele~rie~LE~ELREaAAlEvsLYSVVaE 290 (650)
..+...++++...|+++++=.+++ ++||-||+.
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~l----l~lYE~Vs~ 49 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDL----LSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 356677888888888888888887 578998864
No 7
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.17 E-value=2.6e+02 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006323 257 NQKIEEMELRIEKLEEELRD 276 (650)
Q Consensus 257 ~~k~eele~rie~LE~ELRE 276 (650)
...+++|+.+|+.|++|+.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~e 85 (238)
T PRK14143 66 AARLAQLEQELESLKQELEE 85 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666554
No 8
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=24.34 E-value=1.1e+02 Score=24.90 Aligned_cols=23 Identities=35% Similarity=0.591 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006323 257 NQKIEEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 257 ~~k~eele~rie~LE~ELREaAA 279 (650)
.++||||.+-+=+||-|+||..+
T Consensus 3 k~~ieelkqll~rle~eirett~ 25 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTD 25 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999865
No 9
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=23.27 E-value=56 Score=28.71 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.1
Q ss_pred CCccchhhHHHHHHhhhhhhhh
Q 006323 411 DEDWQEMGTFIAALQKVESWIF 432 (650)
Q Consensus 411 ~~dW~e~~Tf~~ALeKvEsWIF 432 (650)
.+-|-+......-|.|||.||.
T Consensus 16 ~~~Wl~~~~~~~hl~rvE~Wil 37 (75)
T PF01004_consen 16 GETWLDSDSAWKHLTRVESWIL 37 (75)
T ss_pred CcccccCccHHHHHHHHHHHHh
Confidence 4678888888899999999985
No 10
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=22.70 E-value=42 Score=30.18 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHhcccCCCCCCCccchH---------HHHHHHHHHHHHHHH--HHHHHH-HhhhcCCCCCC
Q 006323 484 FQDALQKLCPVRAGGHECGCLP---------VLGRMVMEQCVARLD--VAMFNA-ILRESANEIPT 537 (650)
Q Consensus 484 F~dA~eRLCPvRAgGHECGCLP---------VLaRlVMEQCVaRLD--VAMFNA-ILRESa~eiPT 537 (650)
+.|||+||+|+.-=...=.=.. ....-++.+|+.|.. +.-||. ++|++....|+
T Consensus 24 ~~DA~~RLLPYHv~~~~~~~~~d~~~~~~~d~~~e~~~~~~~~~~~~~~~k~~~ll~re~~r~~~~ 89 (109)
T PF15249_consen 24 LEDAVERLLPYHVFQEPEEDEDDFEKASDWDEEFETVAAELLKRFEKMLNKYRRLLLRESMRDSPS 89 (109)
T ss_pred HHHHHHHhcchhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 5899999999853221111111 133456667888877 334664 45666656663
No 11
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.56 E-value=2.3e+02 Score=25.04 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH----HHHHHhhhhcccccCCCCccccCchhhhh
Q 006323 257 NQKIEEMELRIEKLEEELRD----VAALEISLYSVVPEHGSSAHKVHSPARRL 305 (650)
Q Consensus 257 ~~k~eele~rie~LE~ELRE----aAAlEvsLYSVVaEHGSSshKvHtPARRL 305 (650)
.++...||..|.+|+..|++ -+|||-||.--..-+-++.+-+=.+|+.|
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keL 59 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKEL 59 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHH
Confidence 44445566666665555554 47888888543333434445555555543
No 12
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.33 E-value=55 Score=35.04 Aligned_cols=61 Identities=21% Similarity=0.469 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH---------HHHhhhcCCCCCCCCCCCCcCCCccccccCC------------Ccccccccccccch
Q 006323 511 VMEQCVARLDVAMF---------NAILRESANEIPTDPVSDPILDSKVLPIPAG------------DLSFGSGAQLKNSV 569 (650)
Q Consensus 511 VMEQCVaRLDVAMF---------NAILRESa~eiPTDPiSDPI~DskVLPIPaG------------~lSFGaGAQLKNaI 569 (650)
++ -+=.||.++.- -.++ ....| .|||.|+-||||+++ .+.+-.|.-|-|.-
T Consensus 159 ~p-t~e~Rl~i~~~~~~~~~~gll~~a--~~~GI-----~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt~~GlSNiS 230 (308)
T PRK00979 159 DP-SVEGRLKMLEEGGKGQDKGMLPLA--EEAGI-----ERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPVGCAPHNAP 230 (308)
T ss_pred CC-CHHHHHHHHHhccccchHHHHHHH--HHcCC-----CcEEeccCCCcCccHHHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 44 66678877763 3333 34455 499999999999643 23445555678988
Q ss_pred hchHHHHHhhc
Q 006323 570 GNWSRWLTDMF 580 (650)
Q Consensus 570 GnWSRwLtDlf 580 (650)
..|. ||.+++
T Consensus 231 ~~w~-~lk~~~ 240 (308)
T PRK00979 231 SAWD-WLREFK 240 (308)
T ss_pred hHHH-HHHHhc
Confidence 8884 999876
No 13
>PF14282 FlxA: FlxA-like protein
Probab=20.68 E-value=1.1e+02 Score=27.45 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006323 257 NQKIEEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 257 ~~k~eele~rie~LE~ELREaAA 279 (650)
+..|+.|+.+|+.|.++|.+++.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 78899999999999999998875
Done!