Query 006323
Match_columns 650
No_of_seqs 46 out of 48
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 21:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 97.3 0.00032 1.1E-08 72.5 6.4 261 295-644 44-319 (419)
2 3mmi_A Myosin-4; globular tail 95.0 0.046 1.6E-06 57.1 7.8 277 261-644 17-302 (386)
3 2lme_A Adhesin YADA; trimeric 49.0 19 0.00065 31.0 4.5 32 256-287 14-45 (105)
4 3ra3_B P2F; coiled coil domain 28.1 57 0.0019 23.2 3.3 24 255-281 4-27 (28)
5 1a93_B MAX protein, coiled coi 27.1 63 0.0022 24.1 3.6 23 253-275 9-31 (34)
6 1zme_C Proline utilization tra 26.6 55 0.0019 24.8 3.4 19 259-277 45-63 (70)
7 2yy0_A C-MYC-binding protein; 23.9 96 0.0033 24.3 4.3 28 252-279 20-47 (53)
8 3fke_A Polymerase cofactor VP3 23.2 32 0.0011 31.6 1.7 33 482-532 26-60 (129)
9 2er8_A Regulatory protein Leu3 22.3 38 0.0013 26.0 1.8 21 257-277 48-68 (72)
10 2jx8_A Hpcif1, phosphorylated 22.0 16 0.00053 28.4 -0.5 24 524-547 29-52 (52)
11 4f2d_A L-arabinose isomerase; 21.9 47 0.0016 35.4 3.0 25 271-295 250-274 (500)
12 1dip_A Delta-sleep-inducing pe 21.1 66 0.0023 27.6 3.1 30 252-281 16-48 (78)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00032 Score=72.52 Aligned_cols=261 Identities=16% Similarity=0.194 Sum_probs=160.6
Q ss_pred ccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeecc-cCC-CcchhhhhhhHHHHHHHH--HHHhcCCCCC
Q 006323 295 AHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSC-GND-VSRLTFWLSNTIVLREII--CQAFGNSHNS 370 (650)
Q Consensus 295 shKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWLSN~VVLReII--sqa~~~s~~~ 370 (650)
.+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|.....
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~--- 120 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILT--- 120 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhc---
Confidence 455668998877766677777544444444444555554444555 467 588999999999999988 4443100
Q ss_pred CCcccccccCCCCCCCcCccccccccCCCCCcccCCccCCCCccch----hhHHHHHHhhhhhhhhhhhhhhhhhc---c
Q 006323 371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE----MGTFIAALQKVESWIFSRIVESVWWQ---A 443 (650)
Q Consensus 371 ~~~~~~~~~ng~~k~~~~~s~~~~wk~~~~~k~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ---a 443 (650)
+ ++ ...+ ....+|.+ ...|...|+-+.-.||+.++..+-=. .
T Consensus 121 ---------~-~~-----~~~~----------------~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~ 169 (419)
T 2f6h_X 121 ---------E-ET-----FKNG----------------MTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKK 169 (419)
T ss_dssp ---------C-CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c-Cc-----cccc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0000 01134433 34566778888889999887554321 3
Q ss_pred cCCCccCCCC----CCCccCCCcCCCCCcccccCcchHHHHHHHHHHHHHhcccCCCCCCCccchHHHHHHHHHHHHHHH
Q 006323 444 LTPHMQSPVG----STTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARL 519 (650)
Q Consensus 444 lTPhMQs~~~----~s~k~~g~~~~~~lgDq~QG~fSI~LWK~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRL 519 (650)
+.|-|+-+.. ...+..| +.+...+. +...+++-=-+-|...+..++ .|+==|.|.++++.|...=+
T Consensus 170 l~paIl~~~~~~~~~~~~~~~-~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~I 239 (419)
T 2f6h_X 170 AINAVVISESLPGFSAGETSG-FLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYV 239 (419)
T ss_dssp HHHHHTTSCSSTTTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccccccccc-cccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHH
Confidence 3455543321 1111111 11111211 122343332333333333332 35556999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCCccCCCCCCCC
Q 006323 520 DVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDD 599 (650)
Q Consensus 520 DVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~~~~~~~~~~~ 599 (650)
++-+||.||-.. +-.+|-.|.|+|--|..--.|+... |+.
T Consensus 240 n~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~~~~-~l~---------------- 279 (419)
T 2f6h_X 240 DAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWCKTH-GLT---------------- 279 (419)
T ss_dssp HHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------------
T ss_pred HHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHHHHc-CCh----------------
Confidence 999999998532 2478999999999999999999883 331
Q ss_pred CCCCCCCCccccchhhhhcccccchhhccchhhhhhhcccccccc
Q 006323 600 GQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEMNSVQMQSQ 644 (650)
Q Consensus 600 ~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCP~~~~~~ 644 (650)
. ....|.=|..++.||.++|.-+.|-....++||..--.|
T Consensus 280 ---~--a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Q 319 (419)
T 2f6h_X 280 ---D--GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQ 319 (419)
T ss_dssp ---T--HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHH
T ss_pred ---h--HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHH
Confidence 0 112577889999999999998888888999999875544
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.046 Score=57.13 Aligned_cols=277 Identities=13% Similarity=0.146 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeec-c
Q 006323 261 EEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKS-C 339 (650)
Q Consensus 261 eele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKa-C 339 (650)
+||...++.+..+-.|+. |-=|.. ||.---+..=|-.||+=|.-.-=|+-|+.-..+--+.--++++++==+.+. =
T Consensus 17 ~el~~ll~d~~~~~~ei~--~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~ 93 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVT--EGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 93 (386)
T ss_dssp -CHHHHHHCHHHHHHHHH--HHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHH--HHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444432 222333 555445666788999999988888877764443222222222222222244 3
Q ss_pred cCC-CcchhhhhhhHHHHHHHHHHHhcCCCCCCCcccccccCCCCCCCcCccccccccCCCCCcccCCccCCCCccch-h
Q 006323 340 GND-VSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE-M 417 (650)
Q Consensus 340 GND-VpRLTFWLSN~VVLReIIsqa~~~s~~~~~~~~~~~~ng~~k~~~~~s~~~~wk~~~~~k~~~~~~~~~~dW~e-~ 417 (650)
|.| ++...|||||+--|...|.-+-. .+ ..| .+++|.. .
T Consensus 94 ~~d~i~~g~FWLsN~~~l~sFv~~~q~-------~~---~~~-----------------------------~~d~y~~ll 134 (386)
T 3mmi_A 94 KDETMLGGIFWLSNLSRLPAFAANQKT-------LY---EAN-----------------------------GGDEKDKLT 134 (386)
T ss_dssp TTTHHHHHHHHHHHHTTHHHHHHHHHT-------TC----------------------------------------CHHH
T ss_pred CccccccchHHHHhHHHHHHHHHHHHH-------HH---Hcc-----------------------------ChhHHHHHH
Confidence 788 89999999999877775554431 00 000 0233332 2
Q ss_pred hHHHHHHhhhhh----hhhhhhhhhhh--hcccCCCccCCCCCCCccCCCcCCCCCcccccCcchHHHHHHHHHHHHHhc
Q 006323 418 GTFIAALQKVES----WIFSRIVESVW--WQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKL 491 (650)
Q Consensus 418 ~Tf~~ALeKvEs----WIFSRIVESVW--WQalTPhMQs~~~~s~k~~g~~~~~~lgDq~QG~fSI~LWK~AF~dA~eRL 491 (650)
..+-.-|+.++- .||+-++..+= =|++.|-|-.. ..+++ ++ ....++++-=-+-|...+..|
T Consensus 135 ~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~~~------~~~k~----~~--~~~~~s~~~Il~~L~~~~~~L 202 (386)
T 3mmi_A 135 LIYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMV------LNEKL----FK--NSGDEKFAKLFTFLNEFDAVL 202 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH------TCGGG----SS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccccc------ccccc----cC--CCCccCHHHHHHHHHHHHHHH
Confidence 233445666676 78775554431 01223444211 12222 22 123455443333343343333
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhc
Q 006323 492 CPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGN 571 (650)
Q Consensus 492 CPvRAgGHECGCLPVLaRlVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGn 571 (650)
+ .|+==|.|.++++.|...=+++-+||.||-. .+-.+|-.|.|+|--|..
T Consensus 203 ~-------~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-----------------------r~~cs~s~G~qIr~NLs~ 252 (386)
T 3mmi_A 203 C-------KFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-----------------------CPALNWKYGYEVDRNIER 252 (386)
T ss_dssp H-------HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCBCHHHHHHHHHHHHH
T ss_pred H-------HcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-----------------------CcccCcchHHHHHhhHHH
Confidence 2 3455699999999999999999999999863 346899999999999999
Q ss_pred hHHHHHhhcCCCCCCCCCccCCCCCCCCCCCCCCCCccccchhhhhcccccchhhccchhhhhhhcccccccc
Q 006323 572 WSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEMNSVQMQSQ 644 (650)
Q Consensus 572 WSRwLtDlfGid~~ds~~~~~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCP~~~~~~ 644 (650)
--.|+.. |+.. + ...|.=|+.++.||-+||.-+.|-.+-.++||..-..|
T Consensus 253 LEeW~~~--~l~~------------------a---~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~Q 302 (386)
T 3mmi_A 253 LVSWFEP--RIED------------------V---RPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQ 302 (386)
T ss_dssp HHHHHTT--TSSC------------------C---GGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHH
T ss_pred HHHHHHh--ccHH------------------H---HHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHH
Confidence 9999987 4321 1 13688899999999999988888877889999876544
No 3
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=49.04 E-value=19 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006323 256 LNQKIEEMELRIEKLEEELRDVAALEISLYSV 287 (650)
Q Consensus 256 ~~~k~eele~rie~LE~ELREaAAlEvsLYSV 287 (650)
..+++.+|..||++++.|++-.+|.=++|=.+
T Consensus 14 ~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 14 GAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999998888554
No 4
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.14 E-value=57 Score=23.16 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=15.3
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006323 255 NLNQKIEEMELRIEKLEEELRDVAALE 281 (650)
Q Consensus 255 ~~~~k~eele~rie~LE~ELREaAAlE 281 (650)
.+.||+..|+++|..||-| .||||
T Consensus 4 rlkqknarlkqeiaaleye---iaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE---IAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHhhhHHHHHHHHHHHH---HHHhc
Confidence 3566777777777777654 35655
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.15 E-value=63 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.4
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHH
Q 006323 253 EANLNQKIEEMELRIEKLEEELR 275 (650)
Q Consensus 253 ~~~~~~k~eele~rie~LE~ELR 275 (650)
+.+..+.|++|+.+...||+++|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 45678899999999999999987
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.56 E-value=55 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 006323 259 KIEEMELRIEKLEEELRDV 277 (650)
Q Consensus 259 k~eele~rie~LE~ELREa 277 (650)
.+++|+.+|..||.+|...
T Consensus 45 ~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3777888888888877654
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.91 E-value=96 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 006323 252 DEANLNQKIEEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 252 ~~~~~~~k~eele~rie~LE~ELREaAA 279 (650)
+-.+|.+++.+|+.|++.|.+++.|.-+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888999999999888887643
No 8
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=23.24 E-value=32 Score=31.63 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=22.7
Q ss_pred HHHHHHHHhcccCCCCCCCccchHHHHHHHHHHHHHHHHHHH--HHHHhhhcC
Q 006323 482 NAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAM--FNAILRESA 532 (650)
Q Consensus 482 ~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRLDVAM--FNAILRESa 532 (650)
.||++-.+-||-+.-.+ +-|||+| |||+|+|-.
T Consensus 26 TaFH~Lvqvi~kvgkd~------------------~~Ld~~h~~F~~~L~eG~ 60 (129)
T 3fke_A 26 TAFHQLVQVICKLGKDS------------------NSLDIIHAEFQASLAEGD 60 (129)
T ss_dssp CHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHccch------------------hHHHHHHHHHHHHHhcCC
Confidence 46777666666542222 3599999 999999854
No 9
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.33 E-value=38 Score=26.01 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 006323 257 NQKIEEMELRIEKLEEELRDV 277 (650)
Q Consensus 257 ~~k~eele~rie~LE~ELREa 277 (650)
...+++||.+|+.||..|...
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999888653
No 10
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=21.99 E-value=16 Score=28.38 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.2
Q ss_pred HHHHhhhcCCCCCCCCCCCCcCCC
Q 006323 524 FNAILRESANEIPTDPVSDPILDS 547 (650)
Q Consensus 524 FNAILRESa~eiPTDPiSDPI~Ds 547 (650)
||..-.+|-=|.|+++-.||++|+
T Consensus 29 ~N~~T~~SqWe~P~~~~~dpl~~~ 52 (52)
T 2jx8_A 29 FNRFTNQSLWEMPVLGQHDVISDP 52 (52)
T ss_dssp EETTTTEEESSCCCCTTSCCCCCC
T ss_pred EECCCCCEEeCCCCCCCCCCCCCC
Confidence 577778888899999988999886
No 11
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=21.87 E-value=47 Score=35.40 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCc
Q 006323 271 EEELRDVAALEISLYSVVPEHGSSA 295 (650)
Q Consensus 271 E~ELREaAAlEvsLYSVVaEHGSSs 295 (650)
+++|+.+|.+|+||=.++.|||..+
T Consensus 250 ~e~l~~~Ar~~~Alk~~lee~~~~A 274 (500)
T 4f2d_A 250 RQNVLEAARIELGMKRFLEQGGFHA 274 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 7899999999999999999999873
No 12
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.10 E-value=66 Score=27.60 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.9
Q ss_pred hhhhHhhhHHHHHHHHHHHHHH---HHHHHHHH
Q 006323 252 DEANLNQKIEEMELRIEKLEEE---LRDVAALE 281 (650)
Q Consensus 252 ~~~~~~~k~eele~rie~LE~E---LREaAAlE 281 (650)
.-.+|..+|.||+.|+..||.| ||..|.-|
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4468999999999999999998 67766655
Done!