Query 006323
Match_columns 650
No_of_seqs 46 out of 48
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 21:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7sa2 a.121.1.1 (A:77-192) P 34.5 7.4 0.00054 30.0 1.7 53 477-529 11-63 (116)
2 d1vlaa_ d.227.1.2 (A:) Hypothe 18.5 31 0.0023 27.4 2.7 25 472-496 104-128 (144)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 15.2 73 0.0053 25.2 4.2 31 249-279 86-116 (133)
4 d2hhva2 e.8.1.1 (A:469-876) DN 13.9 39 0.0028 31.3 2.4 42 245-286 21-62 (408)
5 d1qtma2 e.8.1.1 (A:423-831) DN 13.1 42 0.0031 30.9 2.4 40 245-284 23-62 (409)
6 d1kfsa2 e.8.1.1 (A:519-928) DN 11.9 38 0.0028 31.6 1.7 42 245-286 23-64 (410)
7 d2ppqa1 d.144.1.6 (A:5-320) Ho 11.2 1.3E+02 0.0092 25.8 4.8 61 473-539 233-294 (316)
8 d1seta1 a.2.7.1 (A:1-110) Sery 11.1 1.1E+02 0.008 23.7 4.0 24 254-277 67-90 (110)
9 d1gjia2 b.2.5.3 (A:7-181) p65 10.9 5.8 0.00043 35.5 -4.3 7 541-547 165-171 (175)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 10.7 83 0.0061 26.1 3.3 19 261-279 87-105 (129)
No 1
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=34.46 E-value=7.4 Score=29.95 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006323 477 INLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILR 529 (650)
Q Consensus 477 I~LWK~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRLDVAMFNAILR 529 (650)
++.|+..+++...+.||+-....|-+.+|--.|..+.+...++=-.+-..|-+
T Consensus 11 ~~~~~~~~~~~~~~gCl~~~~a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 63 (116)
T d2g7sa2 11 IGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLER 63 (116)
T ss_dssp HHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999988888999999999999999988888888888875554444443
No 2
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=18.51 E-value=31 Score=27.42 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.2
Q ss_pred cCcchHHHHHHHHHHHHHhcccCCC
Q 006323 472 QGSFSINLWKNAFQDALQKLCPVRA 496 (650)
Q Consensus 472 QG~fSI~LWK~AF~dA~eRLCPvRA 496 (650)
.|..+-+-.+++++.|.+|.|||..
T Consensus 104 ~~~~~~e~~~~~i~~a~~k~CpV~~ 128 (144)
T d1vlaa_ 104 DGEPPKDKVEKAVQLSQEKYCSVSA 128 (144)
T ss_dssp SSSCCHHHHHHHHHHHHHTSCTTTT
T ss_pred CCCCCHHHHHHHHHHHhccCCchhH
Confidence 4567778899999999999999864
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.24 E-value=73 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=23.6
Q ss_pred chhhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 006323 249 EHIDEANLNQKIEEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 249 ~~e~~~~~~~k~eele~rie~LE~ELREaAA 279 (650)
.++...++..++++|+..+++|++++..+.+
T Consensus 86 ~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~ 116 (133)
T d1fxkc_ 86 FEDAMESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888876543
No 4
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=13.89 E-value=39 Score=31.29 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=32.3
Q ss_pred ccccchhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006323 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYS 286 (650)
Q Consensus 245 ee~~~~e~~~~~~~k~eele~rie~LE~ELREaAAlEvsLYS 286 (650)
|-++..-|...+.+-.++++.+++.||+++.+.|..++-+.|
T Consensus 21 E~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S 62 (408)
T d2hhva2 21 EFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINS 62 (408)
T ss_dssp HHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred HHhCeEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 445555667778888899999999999999999876644333
No 5
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}
Probab=13.12 E-value=42 Score=30.88 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=31.8
Q ss_pred ccccchhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006323 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISL 284 (650)
Q Consensus 245 ee~~~~e~~~~~~~k~eele~rie~LE~ELREaAAlEvsL 284 (650)
|.++..-|...+.+..++++.+++.||+|+++.|..++-+
T Consensus 23 e~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~ 62 (409)
T d1qtma2 23 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNL 62 (409)
T ss_dssp HHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT
T ss_pred HHhCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC
Confidence 4555666777888888999999999999999988765443
No 6
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]}
Probab=11.92 E-value=38 Score=31.60 Aligned_cols=42 Identities=36% Similarity=0.542 Sum_probs=33.9
Q ss_pred ccccchhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006323 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYS 286 (650)
Q Consensus 245 ee~~~~e~~~~~~~k~eele~rie~LE~ELREaAAlEvsLYS 286 (650)
|.++..-|...+.+..++++.+++.||+|+.+.|..++.+.|
T Consensus 23 e~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S 64 (410)
T d1kfsa2 23 ERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSS 64 (410)
T ss_dssp HHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCT
T ss_pred HHhCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 455566677788889999999999999999999887766554
No 7
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.22 E-value=1.3e+02 Score=25.79 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=40.2
Q ss_pred CcchHHHHHHHHHHHHHhcccCCCCCCCccchHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 006323 473 GSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRM-VMEQCVARLDVAMFNAILRESANEIPTDP 539 (650)
Q Consensus 473 G~fSI~LWK~AF~dA~eRLCPvRAgGHECGCLPVLaRl-VMEQCVaRLDVAMFNAILRESa~eiPTDP 539 (650)
|.+..+.| +||-++.+.+=|+-. -|..+||++.|+ -|-=.+.||....|+ ++.+.-.+.||
T Consensus 233 ~~~~~~~~-~afl~GY~~~rpLs~--~E~~~l~~~~~~aalrf~lsrl~~~~~~---~~~~~~~~kdp 294 (316)
T d2ppqa1 233 GAYNVTKG-KALLEGYQSVRPLSE--AELEALPLLSRGSALRFFLTRLYDWLTT---PAGALVVKKDP 294 (316)
T ss_dssp SCBCHHHH-HHHHHHHHTTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHS---CSSCSCCCCCT
T ss_pred hhhHHHHH-HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcccccccCH
Confidence 34445544 789999999988865 578889999864 234457898776654 33333344455
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=11.13 E-value=1.1e+02 Score=23.74 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=15.7
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHH
Q 006323 254 ANLNQKIEEMELRIEKLEEELRDV 277 (650)
Q Consensus 254 ~~~~~k~eele~rie~LE~ELREa 277 (650)
..+..+..+|..+|..||++|.++
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~ 90 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREK 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777776654
No 9
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=10.90 E-value=5.8 Score=35.45 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=3.0
Q ss_pred CCCcCCC
Q 006323 541 SDPILDS 547 (650)
Q Consensus 541 SDPI~Ds 547 (650)
||||-|.
T Consensus 165 S~PI~d~ 171 (175)
T d1gjia2 165 SNPIYDN 171 (175)
T ss_dssp CCCEEBT
T ss_pred ccccccC
Confidence 4444443
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.66 E-value=83 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006323 261 EEMELRIEKLEEELRDVAA 279 (650)
Q Consensus 261 eele~rie~LE~ELREaAA 279 (650)
++-..+|.+||+|+++++.
T Consensus 87 e~Q~~~i~~Le~E~~~~~~ 105 (129)
T d1ykhb1 87 EEQLRKIDMLQKKLVEVED 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Done!