BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006324
         (650 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P57173|SYE_BUCAI Glutamate--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
           pisum (strain APS) GN=gltX PE=3 SV=1
          Length = 467

 Score = 37.4 bits (85), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 62  LGLNWLKGLGYG---LSGCREVNRLQL-------LSCKCQQAESVSGLTAEDGNGTWFVD 111
           LGLNW +G  +    L   +EV  + L         C CQ+ E +     E GN   +  
Sbjct: 64  LGLNWDEGPYFQTKRLDRYKEVINVMLEKEDAYICVCSCQELEEIRKKQIEKGNKPRYPG 123

Query: 112 SAKKLNLKSVANTPNILEFQD 132
           + + LN+K+++N  +++ F++
Sbjct: 124 TCRNLNIKNISNQNHVIRFKN 144


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,534,104
Number of Sequences: 539616
Number of extensions: 10292442
Number of successful extensions: 21095
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 21093
Number of HSP's gapped (non-prelim): 9
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)