BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006325
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 120 TSFAGLIKLVEKTVRSEVKRSPNRPIYLVGESLGACIALAVASCNPDVDLVLILAN---P 176
TS++ L L + + ++ P++P+ LVG S+GA +A A+AS P LIL P
Sbjct: 74 TSYSSLTFLAQ--IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131
Query: 177 ATSFSK----SQLQTVLPLLEVIPDH 198
A K +QL T L L P H
Sbjct: 132 AEESKKESAVNQLTTCLDYLSSTPQH 157
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 120 TSFAGLIKLVEKTVRSEVKRSPNRPIYLVGESLGACIALAVASCNPD--VDLVLI----L 173
+ F ++ V + V S K P P++L+G S+G IA+ A+ P +VLI L
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168
Query: 174 ANP--ATSF---SKSQLQTVLPLLEVIP 196
ANP AT+F + L VLP L + P
Sbjct: 169 ANPESATTFKVLAAKVLNLVLPNLSLGP 196
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 120 TSFAGLIKLVEKTVRSEVKRSPNRPIYLVGESLGACIALAVASCNPD--VDLVLI----L 173
+ F ++ V + V S K P P++L+G S+G IA+ A+ P +VLI L
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150
Query: 174 ANP--ATSF---SKSQLQTVLPLLEVIP 196
ANP AT+F + L +VLP L P
Sbjct: 151 ANPESATTFKVLAAKVLNSVLPNLSSGP 178
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 120 TSFAGLIKLVEKTVRSEVKRSPNRPIYLVGESLGACIALAVASCNPD--VDLVLI----L 173
+ F ++ V + V S K P P++L+G S+G IA+ A+ P +VLI L
Sbjct: 108 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 167
Query: 174 ANP--ATSF---SKSQLQTVLPLLEVIP 196
ANP AT+F + L VLP L + P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 137 VKRSPN-RPIYLVGESLGACIALAVASCNPDVDLVLILANPATSFSKSQLQTVLPLLEVI 195
VK P+ R IYLVG S G +A +A PD+ ++L PA + L+ +
Sbjct: 112 VKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYN 171
Query: 196 PDH 198
PDH
Sbjct: 172 PDH 174
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 137 VKRSPN-RPIYLVGESLGACIALAVASCNPDVDLVLILANPATSFSKSQLQTVLPLLEVI 195
VK P+ R IYLVG + G +A +A PD+ ++L PA + L+ +
Sbjct: 112 VKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYN 171
Query: 196 PDH 198
PDH
Sbjct: 172 PDH 174
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 137 VKRSPN-RPIYLVGESLGACIALAVASCNPDVDLVLILANPATSFSKSQLQTVLPLLEVI 195
VK P+ R IYLVG + G +A +A PD+ ++L PA + L+ +
Sbjct: 112 VKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYN 171
Query: 196 PDH 198
PDH
Sbjct: 172 PDH 174
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 120 TSFAGLIKLVEKTVRSEVKRSPNRPIYLVGESLGACIALAVASCNPD--VDLVLI----L 173
+ F ++ V + V S K P P++L+G S G IA+ A+ P VLI L
Sbjct: 108 SDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL 167
Query: 174 ANP--ATSF---SKSQLQTVLPLLEVIP 196
ANP AT+F + L VLP L + P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 345 YLDCVSDYVPLAPSEFNKLNLILSPVTLSTLEDGMIVRGLGGIPMEGPVLI 395
Y+ CVS +V LA SE+ L I+ D +I L G+ +EG ++
Sbjct: 200 YIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLEGENIV 250
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 275 RLHAVEAQTLILSSGRDQLLPSLEEGERLFHALPNGEIRRAGDSGHFLFLE 325
RL ++AQTLI+ D+ +P ++ G RL + E+ D GH+ E
Sbjct: 224 RLAEIKAQTLIVWGRNDRFVP-MDAGLRLLSGIAGSELHIFRDCGHWAQWE 273
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 277 HAVEAQTL------ILSSGRDQLLPSLEEGERLFHALPNGEIRRAGDSGHFLFLEDGIDL 330
++AQ++ I S GR + P L+E E P G +R D + ++L I L
Sbjct: 549 QTIKAQSIPYLSRAIPSHGRGE--PELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPL 606
Query: 331 ASAIKGSYFYRRGKYLDCVSD 351
A K + + +++ ++
Sbjct: 607 AETTKPVFTFEHPNFMNSSNE 627
>pdb|2YJG|A Chain A, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
pdb|2YJG|B Chain B, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
Length = 436
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 285 ILSSGRDQLLPSLEEGERLFHALPNGEIRRAGDSGHFLFLED-----GIDLASAIK 335
ILS GRD+ LP E + L L N ++ DS ++ +++D DL A+K
Sbjct: 345 ILSRGRDETLPDQWEAQILARILINHKVIMVTDSKNYEYVKDMFMTPAKDLGEALK 400
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 277 HAVEAQTL------ILSSGRDQLLPSLEEGERLFHALPNGEIRRAGDSGHFLFLEDGIDL 330
++AQ++ I S GR + P L+E E P G +R D + ++L I L
Sbjct: 549 QTIKAQSIPYLSRAIPSHGRGE--PELDEDEXWIQKYPQGHVRNNXDQIYVVYLSKYIPL 606
Query: 331 ASAIKGSYFYRRGKYLDCVSD 351
A K + + + + ++
Sbjct: 607 AETTKPVFTFEHPNFXNSSNE 627
>pdb|3FW2|A Chain A, C-Terminal Domain Of Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Thetaiotaomicron.
pdb|3FW2|B Chain B, C-Terminal Domain Of Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Thetaiotaomicron.
pdb|3FW2|C Chain C, C-Terminal Domain Of Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Thetaiotaomicron.
pdb|3FW2|D Chain D, C-Terminal Domain Of Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Thetaiotaomicron
Length = 150
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 434 KDGRLLDSFPFDQIGIFGGVPVSAVNFYKLLSLKSHILLYPGGIREALHRKGEEYK 489
KD D+ ++Q+ FGG+ Y + + ++ILL G A + +GEE K
Sbjct: 85 KDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLRGEELK 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,182,921
Number of Sequences: 62578
Number of extensions: 774339
Number of successful extensions: 1618
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 19
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)