BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006326
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 144/332 (43%), Gaps = 60/332 (18%)
Query: 32 SLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG 91
+ +++G+ ++ + IHYPR + W I K G + I YVFWN HEP+ G YDF
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 92 GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQ 151
G+ D+ F + Q G Y + GP++ +EW GG P+WL +I R + + ++
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 152 NFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGP--SYVRWAAKMAVELE 209
F ++ + + L S+GG II Q+ENEY AFG P S +R K A
Sbjct: 134 LFLNEVGKQL--ADLQISKGGNIIXVQVENEY----GAFGIDKPYISEIRDXVKQAG--F 185
Query: 210 TGVPWVMCK-----QTDAPDPVINTCN---GMRCGQTFSGPNS--PNKPSMWTENWT--- 256
TGVP C + +A D ++ T N G + F P+ P +E W+
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 257 -----------------------------SLYY-HGGTNFGRTASAYI------ITSYYD 280
SLY HGGT+FG A TSY
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGANFPNFSPTCTSYDY 305
Query: 281 QAPLDEYGLTRQPKWGHLKELHGAINSCSETL 312
AP++E G PK+ ++ L G ETL
Sbjct: 306 DAPINESGKV-TPKYLEVRNLLGNYLPEGETL 336
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 559 QIYNTEQNLENAPEWTKIDQDLSSKQPLTWYKTAFDA-PVGDDPVALNLSSMGKGEAWVN 617
Q+Y + A + Q+ + QP +Y++ F+ +GD LN + KG WVN
Sbjct: 482 QVYTIPVDYSFARDKQYKQQENAENQP-AYYRSTFNLNELGD--TFLNXXNWSKGXVWVN 538
Query: 618 GLSVGRYWVSFYTSEGNSSQTLYV 641
G ++GRYW E QTLYV
Sbjct: 539 GHAIGRYW------EIGPQQTLYV 556
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 26 VTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP 85
+ Y S + DGQ SGSIHY R W + K K GL+ IQTYV WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 86 GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEP 145
G+Y F +D+ F++ GL L GP+I +EW GG P WL + +I+ R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 146 FKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEY 183
+ + + ++ MK L GGP+I Q+ENEY
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEY 166
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 611 KGEAWVNGLSVGRYW 625
KG+ W+NG ++GRYW
Sbjct: 555 KGQVWINGFNLGRYW 569
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 5/192 (2%)
Query: 26 VTYDGRSLIIDGQRKILFSGSIH-YPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ 84
VT+D S+ ++G+R ++FSG +H Y ++ + K K G + + YV W L E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 85 PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNE 144
PG Y G +DL F + G+Y GP+I +E + GGFP WL V I+ RT +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGIL-RTSDE 124
Query: 145 PFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAF-GEAGPSYVRWAAK 203
+ N+ + I + + + + GGPIIL Q ENEY + G SY+++
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 204 MAVELETGVPWV 215
A + VP++
Sbjct: 183 HARDAGIVVPFI 194
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRY 94
+DG+ + SG+IHY R P+ W + K G + ++TYV WNLHEP GE+ F G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 95 DLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPF-----KFY 149
DL KF++ Q GLYA + PFI +EW +GG P WL N+ R+ + + ++Y
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130
Query: 150 MQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELE 209
Q + L GG I++ Q+ENEY ++GE +Y+R ++ E
Sbjct: 131 DQLLPRLVPRL-------LDNGGNILMMQVENEY----GSYGE-DKAYLRAIRQLMEECG 178
Query: 210 TGVP 213
P
Sbjct: 179 VTCP 182
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 604 LNLSSMGKGEAWVNGLSVGRYWVSFYTSEGNSSQTLYVYI 643
L+LS GKG A+VNG ++GR+W N TL +YI
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFW--------NVGPTLSLYI 554
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 4/191 (2%)
Query: 26 VTYDGRSLIIDGQRKILFSGSIHYPR-STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ 84
VT+D SL + G+R ++FSG +H R P ++ + K K G + + YV W L E +
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 85 PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNE 144
PG + G + L F + G+Y GP+I +E + GGFP WL V + RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKL-RTDAP 144
Query: 145 PFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKM 204
+ N+ I +++ + + + GGP+IL Q ENEY + Y+++
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 205 AVELETGVPWV 215
A VP +
Sbjct: 203 ARNAGIIVPLI 213
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 26 VTYDGR-SLIIDGQRKILFSGSIH----YPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNL 80
VT DGR +L +DG + + ++ +P ++WP++ ++ G + +Q + W
Sbjct: 43 VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAI----EKVGANTVQVPIAWEQ 98
Query: 81 HEPQPGEYDF 90
EP G++DF
Sbjct: 99 IEPVEGQFDF 108
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 45 GSIHYPRSTP-QMWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKE 102
G +YP P + W + +E GL ++ F W L EP+PG ++G L + I
Sbjct: 3 GVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGW---LDEAIAT 59
Query: 103 IQAQGLYACLTIGPFIESEWTYGGFP 128
+ A+GL L +W +P
Sbjct: 60 LAAEGLKVVLGTPTATPPKWLVDRYP 85
>pdb|3Q10|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q12|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate
Length = 287
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 512 PDSGAFLEKRFAGLATVEIHCGDMENSYNFTNNYTWGYEVGLLGEKLQIYNTEQNLENAP 571
PD F EK + LA + DM N T + GL Y TE+ + AP
Sbjct: 146 PDVACFGEKDYQQLALIRKMVADMGYDINIVGVPTVRAKDGLALSSRNGYLTEEERQIAP 205
Query: 572 EWTKIDQDLSSKQPL 586
+ +KI L+ K L
Sbjct: 206 QLSKIMWALAEKMAL 220
>pdb|1FO0|A Chain A, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
pdb|1NAM|A Chain A, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
Length = 116
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 333 EEAGGGCVAFLINNDG-RDDNATVQFRNMSFQLPPKSISIL 372
++ G + FLI D + +NATV +++FQ P SI ++
Sbjct: 37 KQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLI 77
>pdb|2OL3|A Chain A, Crystal Structure Of Bm3.3 Scfv Tcr In Complex With
Pbm8-h-2kbm8 Mhc Class I Molecule
Length = 142
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 333 EEAGGGCVAFLINNDG-RDDNATVQFRNMSFQLPPKSISIL 372
++ G + FLI D + +NATV +++FQ P SI ++
Sbjct: 37 KQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLI 77
>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
Length = 233
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 128 PFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPII--LSQIENEYQN 185
P +++V N Y TD Y + KIV + L SQ G I+ Q N+Y N
Sbjct: 61 PLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPN 120
Query: 186 IEKAF 190
+EK+
Sbjct: 121 LEKSL 125
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 534 DMENSYNFTNNYTWGYEVGLLGEKLQIYNTEQNLE 568
D+E + F ++ +GY GL GE LQ Y+ +NL+
Sbjct: 25 DLEIALQFCSHLVYGY-AGLRGENLQAYSMNENLD 58
>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
Length = 481
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 29 DGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKA-KEGGLHVIQTYVFWNLHEPQPGE 87
DGRSLI+ G S + P PQ + +A+ + G + ++ + W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 88 YD 89
YD
Sbjct: 99 YD 100
>pdb|2OSY|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
pdb|2OSY|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
Length = 481
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 29 DGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKA-KEGGLHVIQTYVFWNLHEPQPGE 87
DGRSLI+ G S + P PQ + +A+ + G + ++ + W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 88 YD 89
YD
Sbjct: 99 YD 100
>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
Gm3 Complex
Length = 481
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 29 DGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKA-KEGGLHVIQTYVFWNLHEPQPGE 87
DGRSLI+ G S + P PQ + +A+ + G + ++ + W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 88 YD 89
YD
Sbjct: 99 YD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,842,130
Number of Sequences: 62578
Number of extensions: 1002555
Number of successful extensions: 2190
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2169
Number of HSP's gapped (non-prelim): 32
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)