Query 006326
Match_columns 650
No_of_seqs 220 out of 1456
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 21:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3E-164 7E-169 1394.1 55.1 613 22-647 26-701 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-138 6E-143 1140.0 35.6 560 23-647 17-612 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.7E-80 3.7E-85 658.4 17.4 265 32-304 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.5E-34 3.2E-39 327.3 9.8 173 26-206 1-184 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 1.3E-22 2.8E-27 220.7 6.8 144 46-207 1-162 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.1 1.1E-09 2.3E-14 115.9 16.1 151 26-217 1-157 (298)
7 PRK10150 beta-D-glucuronidase; 98.9 1.5E-08 3.2E-13 117.4 17.0 158 24-216 276-447 (604)
8 PF00150 Cellulase: Cellulase 98.9 2.1E-08 4.6E-13 103.6 15.0 161 35-217 3-171 (281)
9 PRK09525 lacZ beta-D-galactosi 98.9 4.9E-08 1.1E-12 118.8 19.2 147 24-215 334-486 (1027)
10 COG3250 LacZ Beta-galactosidas 98.8 8.3E-08 1.8E-12 113.1 14.9 135 24-205 284-424 (808)
11 PRK10340 ebgA cryptic beta-D-g 98.7 9.5E-08 2.1E-12 116.4 15.2 237 24-306 318-603 (1021)
12 PF13364 BetaGal_dom4_5: Beta- 98.7 1.7E-08 3.7E-13 91.8 6.5 61 583-649 33-96 (111)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 8.7E-08 1.9E-12 87.1 9.1 84 426-511 23-110 (111)
14 smart00633 Glyco_10 Glycosyl h 98.2 5.2E-06 1.1E-10 86.1 8.9 116 78-218 3-125 (254)
15 PF03198 Glyco_hydro_72: Gluca 98.1 3.9E-05 8.5E-10 80.9 13.2 155 22-215 7-180 (314)
16 TIGR03356 BGL beta-galactosida 97.8 3.5E-05 7.5E-10 85.9 8.0 97 55-163 54-151 (427)
17 PF02837 Glyco_hydro_2_N: Glyc 97.8 0.00012 2.6E-09 70.5 10.1 96 434-531 64-164 (167)
18 PLN02705 beta-amylase 97.7 0.00012 2.5E-09 82.5 8.8 116 54-179 267-414 (681)
19 PLN02905 beta-amylase 97.7 0.00015 3.2E-09 81.9 9.3 79 55-139 286-376 (702)
20 PF13204 DUF4038: Protein of u 97.7 0.00047 1E-08 73.0 12.5 150 30-209 2-177 (289)
21 PLN02161 beta-amylase 97.6 0.00018 4E-09 79.8 9.6 116 55-179 117-262 (531)
22 PLN02801 beta-amylase 97.6 0.0002 4.3E-09 79.5 9.1 117 53-179 35-183 (517)
23 PLN00197 beta-amylase; Provisi 97.6 0.00023 5E-09 79.6 9.3 116 53-179 125-272 (573)
24 PLN02803 beta-amylase 97.6 0.00026 5.6E-09 79.0 9.5 114 55-179 107-252 (548)
25 PF01373 Glyco_hydro_14: Glyco 97.5 0.00018 4E-09 78.3 6.7 113 57-179 18-152 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.2 0.0005 1.1E-08 73.9 6.2 157 42-219 11-179 (320)
27 COG3693 XynA Beta-1,4-xylanase 97.1 0.0027 5.9E-08 67.1 10.0 133 64-219 55-194 (345)
28 PF00232 Glyco_hydro_1: Glycos 97.1 0.00054 1.2E-08 77.1 5.0 97 55-163 58-156 (455)
29 PF14488 DUF4434: Domain of un 97.0 0.0064 1.4E-07 59.3 11.0 135 50-215 15-158 (166)
30 PF07745 Glyco_hydro_53: Glyco 96.8 0.0045 9.7E-08 66.8 9.1 104 58-185 27-137 (332)
31 PRK15014 6-phospho-beta-glucos 96.7 0.0019 4.1E-08 73.1 5.1 97 55-163 69-168 (477)
32 PRK09852 cryptic 6-phospho-bet 96.7 0.0017 3.8E-08 73.3 4.6 97 55-163 71-170 (474)
33 PLN02998 beta-glucosidase 96.6 0.0021 4.6E-08 73.0 4.6 100 55-162 82-183 (497)
34 PLN02814 beta-glucosidase 96.5 0.0022 4.7E-08 73.1 4.4 100 55-162 77-178 (504)
35 PRK09593 arb 6-phospho-beta-gl 96.5 0.0031 6.7E-08 71.4 5.3 100 55-162 73-175 (478)
36 COG2730 BglC Endoglucanase [Ca 96.5 0.0088 1.9E-07 66.4 8.5 117 53-185 66-193 (407)
37 PRK09589 celA 6-phospho-beta-g 96.4 0.0031 6.8E-08 71.3 4.8 100 55-162 67-169 (476)
38 PRK13511 6-phospho-beta-galact 96.4 0.0033 7.2E-08 71.0 4.9 96 55-162 54-150 (469)
39 TIGR01233 lacG 6-phospho-beta- 96.3 0.0057 1.2E-07 69.1 6.2 96 55-162 53-149 (467)
40 PLN02849 beta-glucosidase 96.3 0.004 8.7E-08 70.9 4.8 100 55-162 79-180 (503)
41 PF14871 GHL6: Hypothetical gl 95.7 0.063 1.4E-06 50.5 9.2 98 59-161 4-123 (132)
42 COG2723 BglB Beta-glucosidase/ 95.4 0.019 4.2E-07 64.0 5.2 96 55-162 59-157 (460)
43 PRK10150 beta-D-glucuronidase; 95.1 0.073 1.6E-06 62.1 9.1 72 436-509 63-137 (604)
44 PRK10340 ebgA cryptic beta-D-g 94.9 0.099 2.1E-06 64.7 9.7 91 438-533 109-206 (1021)
45 COG3867 Arabinogalactan endo-1 94.3 0.21 4.7E-06 52.5 9.1 116 57-185 65-183 (403)
46 KOG2230 Predicted beta-mannosi 94.1 0.54 1.2E-05 53.3 12.2 150 30-219 327-494 (867)
47 PF02638 DUF187: Glycosyl hydr 94.1 0.32 7E-06 52.2 10.2 117 53-180 17-161 (311)
48 PRK09525 lacZ beta-D-galactosi 94.0 0.21 4.5E-06 61.9 9.6 92 437-533 119-218 (1027)
49 TIGR01515 branching_enzym alph 92.7 2.2 4.7E-05 50.2 15.0 54 62-115 164-227 (613)
50 smart00642 Aamy Alpha-amylase 92.4 0.33 7.3E-06 47.3 6.7 65 57-121 21-97 (166)
51 PF02837 Glyco_hydro_2_N: Glyc 92.3 0.22 4.9E-06 47.7 5.3 42 584-625 67-111 (167)
52 PRK09936 hypothetical protein; 92.3 0.26 5.6E-06 52.0 6.0 57 51-113 34-91 (296)
53 COG3934 Endo-beta-mannanase [C 92.3 0.11 2.4E-06 57.7 3.4 157 32-206 3-168 (587)
54 TIGR00542 hxl6Piso_put hexulos 91.0 3.6 7.8E-05 42.9 13.1 127 54-212 15-149 (279)
55 COG1649 Uncharacterized protei 89.8 1.5 3.2E-05 48.8 9.1 123 53-184 62-210 (418)
56 PLN02447 1,4-alpha-glucan-bran 89.3 6.6 0.00014 47.1 14.6 61 55-116 251-322 (758)
57 PRK05402 glycogen branching en 89.2 4.2 9.2E-05 48.7 13.2 54 61-114 272-335 (726)
58 PRK09441 cytoplasmic alpha-amy 89.1 0.6 1.3E-05 53.0 5.8 61 54-114 18-101 (479)
59 PRK14706 glycogen branching en 89.1 5.1 0.00011 47.3 13.5 54 61-114 174-237 (639)
60 PRK12568 glycogen branching en 88.7 6.5 0.00014 47.0 14.0 59 60-120 275-345 (730)
61 PF01229 Glyco_hydro_39: Glyco 87.7 1.4 3.1E-05 50.1 7.6 69 44-115 28-105 (486)
62 PRK14705 glycogen branching en 87.0 10 0.00022 48.0 14.7 55 60-114 771-835 (1224)
63 PF14307 Glyco_tran_WbsX: Glyc 86.9 6.8 0.00015 42.6 11.9 140 52-218 55-197 (345)
64 PF00128 Alpha-amylase: Alpha 86.1 0.81 1.8E-05 47.3 4.2 57 58-114 7-72 (316)
65 PF05913 DUF871: Bacterial pro 85.5 1.3 2.7E-05 48.7 5.3 74 43-122 2-75 (357)
66 PRK13210 putative L-xylulose 5 84.1 10 0.00022 39.4 11.3 131 55-212 16-149 (284)
67 PF13200 DUF4015: Putative gly 84.1 3.5 7.6E-05 44.4 7.8 149 53-212 11-190 (316)
68 PRK12313 glycogen branching en 82.7 2.4 5.2E-05 49.9 6.5 54 61-114 177-240 (633)
69 PRK10785 maltodextrin glucosid 80.8 3.1 6.7E-05 48.7 6.5 57 58-114 182-246 (598)
70 PF01261 AP_endonuc_2: Xylose 80.7 3.2 7E-05 40.4 5.7 124 61-212 1-128 (213)
71 PRK10933 trehalose-6-phosphate 80.4 3.3 7.2E-05 48.0 6.5 55 57-114 35-101 (551)
72 cd00019 AP2Ec AP endonuclease 80.2 17 0.00037 37.8 11.2 97 55-180 10-107 (279)
73 TIGR02402 trehalose_TreZ malto 79.3 3.6 7.8E-05 47.7 6.3 56 59-114 115-180 (542)
74 PLN02960 alpha-amylase 79.1 4 8.7E-05 49.4 6.6 56 59-114 421-486 (897)
75 PRK01060 endonuclease IV; Prov 78.5 11 0.00024 39.2 9.2 93 57-178 14-109 (281)
76 COG0296 GlgB 1,4-alpha-glucan 78.5 3.6 7.9E-05 48.1 5.9 53 57-113 167-233 (628)
77 PF14587 Glyco_hydr_30_2: O-Gl 78.2 13 0.00027 41.2 9.6 122 83-219 93-227 (384)
78 TIGR02104 pulA_typeI pullulana 78.2 3.3 7.2E-05 48.5 5.6 55 59-114 168-249 (605)
79 PRK09505 malS alpha-amylase; R 78.0 4.6 9.9E-05 48.1 6.7 59 57-115 232-313 (683)
80 TIGR02631 xylA_Arthro xylose i 77.4 34 0.00075 37.9 13.0 91 53-162 30-125 (382)
81 PF06832 BiPBP_C: Penicillin-B 77.4 3.8 8.2E-05 35.4 4.5 51 454-512 33-84 (89)
82 TIGR02456 treS_nterm trehalose 77.3 5 0.00011 46.4 6.7 57 56-114 29-96 (539)
83 PRK13209 L-xylulose 5-phosphat 75.9 25 0.00053 36.6 10.9 125 56-212 22-154 (283)
84 TIGR02403 trehalose_treC alpha 75.7 5.8 0.00013 45.9 6.7 57 57-115 29-96 (543)
85 PF02055 Glyco_hydro_30: O-Gly 74.7 13 0.00029 42.6 9.1 163 41-219 77-281 (496)
86 PLN02361 alpha-amylase 74.4 6.9 0.00015 43.6 6.5 56 59-114 33-96 (401)
87 TIGR01531 glyc_debranch glycog 74.3 11 0.00024 47.9 8.7 121 31-157 103-243 (1464)
88 cd06593 GH31_xylosidase_YicI Y 73.9 7.2 0.00016 41.5 6.4 67 53-119 22-91 (308)
89 TIGR00677 fadh2_euk methylenet 73.8 11 0.00024 39.9 7.7 108 41-163 130-251 (281)
90 PF02679 ComA: (2R)-phospho-3- 72.8 5.4 0.00012 41.4 4.9 52 54-115 83-134 (244)
91 PF03659 Glyco_hydro_71: Glyco 71.9 14 0.0003 41.1 8.1 53 53-114 15-67 (386)
92 KOG0626 Beta-glucosidase, lact 71.9 7.2 0.00016 44.6 5.9 113 56-178 92-208 (524)
93 KOG0496 Beta-galactosidase [Ca 71.0 1.6 3.5E-05 50.7 0.6 28 273-300 324-351 (649)
94 cd04908 ACT_Bt0572_1 N-termina 69.5 17 0.00038 29.2 6.3 55 54-112 12-66 (66)
95 PRK14510 putative bifunctional 69.4 7.2 0.00016 49.5 5.8 56 59-114 191-267 (1221)
96 smart00812 Alpha_L_fucos Alpha 68.7 32 0.00069 38.2 10.1 107 48-163 77-191 (384)
97 TIGR02100 glgX_debranch glycog 68.6 26 0.00057 41.9 10.0 55 60-114 189-265 (688)
98 cd06592 GH31_glucosidase_KIAA1 68.4 38 0.00082 36.2 10.3 69 50-121 25-97 (303)
99 PRK09856 fructoselysine 3-epim 67.9 77 0.0017 32.6 12.4 130 56-212 14-145 (275)
100 PRK09989 hypothetical protein; 67.7 57 0.0012 33.5 11.3 42 57-112 17-58 (258)
101 TIGR02401 trehalose_TreY malto 67.5 11 0.00024 45.6 6.7 62 55-116 16-87 (825)
102 PF13199 Glyco_hydro_66: Glyco 67.1 1E+02 0.0022 36.0 14.1 79 55-133 118-211 (559)
103 PF11324 DUF3126: Protein of u 67.0 11 0.00024 30.9 4.5 24 461-484 25-48 (63)
104 smart00518 AP2Ec AP endonuclea 66.7 95 0.0021 32.0 12.8 93 57-179 12-105 (273)
105 PRK14507 putative bifunctional 63.6 14 0.0003 48.2 6.7 60 53-116 756-829 (1693)
106 PRK14511 maltooligosyl trehalo 63.5 15 0.00033 44.8 6.7 60 55-118 20-93 (879)
107 TIGR03849 arch_ComA phosphosul 62.4 15 0.00033 38.0 5.7 52 55-116 71-122 (237)
108 PLN00196 alpha-amylase; Provis 62.3 18 0.00038 40.8 6.6 57 58-114 47-112 (428)
109 PF08308 PEGA: PEGA domain; I 62.1 7.7 0.00017 31.8 2.9 47 456-514 3-49 (71)
110 cd06591 GH31_xylosidase_XylS X 61.6 16 0.00036 39.2 6.1 66 53-119 22-91 (319)
111 TIGR02102 pullulan_Gpos pullul 61.3 14 0.00029 46.5 5.9 21 94-114 555-575 (1111)
112 PF01791 DeoC: DeoC/LacD famil 60.7 3.7 8E-05 42.0 0.9 53 58-113 79-131 (236)
113 PRK14582 pgaB outer membrane N 58.6 32 0.0007 40.9 8.2 110 55-183 334-468 (671)
114 COG3589 Uncharacterized conser 58.2 20 0.00043 38.9 5.8 73 43-122 4-77 (360)
115 PRK03705 glycogen debranching 57.3 18 0.00038 43.1 5.8 55 60-114 184-262 (658)
116 cd06589 GH31 The enzymes of gl 56.7 37 0.0008 35.4 7.5 65 53-118 22-90 (265)
117 COG1306 Uncharacterized conser 56.6 24 0.00051 37.7 5.9 59 53-114 75-144 (400)
118 PRK12677 xylose isomerase; Pro 56.5 1E+02 0.0022 34.3 11.2 89 56-162 32-124 (384)
119 cd06602 GH31_MGAM_SI_GAA This 56.0 22 0.00047 38.7 5.9 74 47-121 13-93 (339)
120 cd06598 GH31_transferase_CtsZ 55.6 26 0.00056 37.7 6.3 67 53-119 22-95 (317)
121 TIGR02103 pullul_strch alpha-1 55.2 21 0.00045 43.9 6.0 21 94-114 404-424 (898)
122 PF02065 Melibiase: Melibiase; 53.3 1E+02 0.0022 34.4 10.7 90 47-136 50-148 (394)
123 PF01261 AP_endonuc_2: Xylose 53.1 68 0.0015 30.9 8.4 103 56-186 28-137 (213)
124 cd06603 GH31_GANC_GANAB_alpha 52.5 27 0.00059 37.8 5.9 73 47-120 13-90 (339)
125 TIGR00676 fadh2 5,10-methylene 52.4 58 0.0013 34.2 8.2 109 40-163 125-247 (272)
126 TIGR02455 TreS_stutzeri trehal 52.2 37 0.00081 40.1 7.1 71 61-131 80-175 (688)
127 TIGR03234 OH-pyruv-isom hydrox 51.3 30 0.00065 35.4 5.8 43 56-112 15-57 (254)
128 PRK13398 3-deoxy-7-phosphohept 51.3 60 0.0013 34.2 8.0 82 25-114 15-98 (266)
129 PLN02877 alpha-amylase/limit d 51.0 28 0.00062 43.0 6.2 21 94-114 466-486 (970)
130 cd06599 GH31_glycosidase_Aec37 50.9 38 0.00082 36.4 6.7 65 55-119 29-98 (317)
131 PF14701 hDGE_amylase: glucano 49.9 38 0.00082 38.1 6.5 104 48-157 13-135 (423)
132 cd06600 GH31_MGAM-like This fa 49.4 32 0.0007 37.0 5.8 72 47-119 13-89 (317)
133 cd06545 GH18_3CO4_chitinase Th 49.2 73 0.0016 32.8 8.3 97 84-209 35-132 (253)
134 PF12876 Cellulase-like: Sugar 49.1 29 0.00063 29.9 4.5 48 170-217 7-63 (88)
135 COG0366 AmyA Glycosidases [Car 48.4 33 0.00071 38.5 6.0 56 59-114 33-97 (505)
136 PRK08673 3-deoxy-7-phosphohept 47.8 53 0.0012 35.8 7.2 76 32-114 86-164 (335)
137 COG1735 Php Predicted metal-de 47.5 2.1E+02 0.0045 30.9 11.2 58 59-133 52-109 (316)
138 cd06601 GH31_lyase_GLase GLase 46.9 1.4E+02 0.0031 32.4 10.3 72 47-119 13-89 (332)
139 PF08531 Bac_rhamnosid_N: Alph 46.3 73 0.0016 31.0 7.3 57 455-512 6-69 (172)
140 KOG2024 Beta-Glucuronidase GUS 45.9 33 0.00071 36.1 4.9 56 422-477 69-132 (297)
141 cd06604 GH31_glucosidase_II_Ma 44.7 44 0.00094 36.2 6.0 73 47-120 13-90 (339)
142 cd06595 GH31_xylosidase_XylS-l 44.4 55 0.0012 34.7 6.6 65 53-117 23-97 (292)
143 COG1523 PulA Type II secretory 44.3 35 0.00076 40.8 5.5 55 60-114 205-285 (697)
144 PF02228 Gag_p19: Major core p 43.8 9.9 0.00022 32.4 0.7 37 53-106 20-56 (92)
145 TIGR00433 bioB biotin syntheta 42.6 38 0.00082 35.5 5.0 53 58-113 123-177 (296)
146 PLN03059 beta-galactosidase; P 41.5 44 0.00096 40.6 5.8 40 439-479 620-659 (840)
147 PRK08645 bifunctional homocyst 40.1 95 0.0021 36.6 8.2 111 36-162 459-578 (612)
148 cd06563 GH20_chitobiase-like T 39.7 1.1E+02 0.0023 33.6 8.1 59 53-114 16-106 (357)
149 PLN02784 alpha-amylase 39.3 65 0.0014 39.4 6.7 57 58-114 524-588 (894)
150 PF04914 DltD_C: DltD C-termin 39.2 25 0.00054 33.1 2.6 50 95-163 37-87 (130)
151 PRK14566 triosephosphate isome 38.7 86 0.0019 33.0 6.8 75 35-115 62-136 (260)
152 cd00311 TIM Triosephosphate is 38.3 62 0.0013 33.6 5.7 74 36-115 52-125 (242)
153 PF01055 Glyco_hydro_31: Glyco 37.9 63 0.0014 36.1 6.1 70 53-123 41-112 (441)
154 cd02742 GH20_hexosaminidase Be 37.8 64 0.0014 34.4 5.9 59 53-114 14-92 (303)
155 cd06565 GH20_GcnA-like Glycosy 37.7 85 0.0018 33.5 6.8 58 53-114 15-80 (301)
156 TIGR00419 tim triosephosphate 37.6 66 0.0014 32.6 5.6 44 61-114 74-117 (205)
157 cd06597 GH31_transferase_CtsY 37.6 72 0.0016 34.7 6.3 73 47-119 13-110 (340)
158 cd06416 GH25_Lys1-like Lys-1 i 37.6 89 0.0019 30.9 6.5 88 44-134 55-157 (196)
159 smart00481 POLIIIAc DNA polyme 37.1 94 0.002 24.9 5.5 45 56-113 16-60 (67)
160 PRK09997 hydroxypyruvate isome 36.4 67 0.0015 33.0 5.6 42 57-112 17-58 (258)
161 COG1891 Uncharacterized protei 36.2 13 0.00027 36.8 0.2 67 39-113 115-186 (235)
162 PRK09432 metF 5,10-methylenete 35.5 71 0.0015 34.1 5.7 88 60-163 168-266 (296)
163 PLN03036 glutamine synthetase; 35.1 1E+02 0.0023 34.8 7.2 67 55-127 230-308 (432)
164 PRK09856 fructoselysine 3-epim 35.0 50 0.0011 34.0 4.5 58 56-117 91-153 (275)
165 KOG0622 Ornithine decarboxylas 34.9 59 0.0013 36.3 5.0 66 53-128 191-257 (448)
166 cd06594 GH31_glucosidase_YihQ 34.5 1.2E+02 0.0026 32.7 7.3 68 53-120 21-97 (317)
167 cd00537 MTHFR Methylenetetrahy 34.4 1E+02 0.0022 32.2 6.7 107 42-163 130-250 (274)
168 PF07691 PA14: PA14 domain; I 34.3 1.7E+02 0.0036 26.8 7.4 70 439-512 47-124 (145)
169 PRK00042 tpiA triosephosphate 33.7 84 0.0018 32.8 5.8 50 60-115 78-127 (250)
170 PF00120 Gln-synt_C: Glutamine 33.7 77 0.0017 32.9 5.6 60 54-118 68-139 (259)
171 PRK15492 triosephosphate isome 33.2 87 0.0019 32.9 5.8 50 60-115 86-135 (260)
172 PF10566 Glyco_hydro_97: Glyco 32.9 47 0.001 35.2 3.8 113 53-173 30-158 (273)
173 COG5309 Exo-beta-1,3-glucanase 32.7 2.7E+02 0.0058 29.7 9.0 119 53-219 61-179 (305)
174 cd01299 Met_dep_hydrolase_A Me 32.3 88 0.0019 33.3 5.9 59 53-114 118-180 (342)
175 cd06564 GH20_DspB_LnbB-like Gl 31.6 1.2E+02 0.0026 32.6 6.8 139 53-212 15-196 (326)
176 PRK09267 flavodoxin FldA; Vali 30.5 3.9E+02 0.0085 25.4 9.6 74 35-111 44-117 (169)
177 cd06418 GH25_BacA-like BacA is 29.7 3E+02 0.0065 27.9 8.9 90 53-164 50-140 (212)
178 PRK13210 putative L-xylulose 5 29.5 77 0.0017 32.7 4.8 60 55-115 94-154 (284)
179 PRK14567 triosephosphate isome 29.4 1.1E+02 0.0024 32.1 5.8 49 61-115 78-126 (253)
180 cd04882 ACT_Bt0572_2 C-termina 29.2 1.2E+02 0.0025 23.6 4.7 54 55-110 11-64 (65)
181 KOG0683 Glutamine synthetase [ 28.4 71 0.0015 35.0 4.2 46 81-127 202-259 (380)
182 TIGR00587 nfo apurinic endonuc 28.3 2.8E+02 0.006 29.0 8.7 83 58-162 14-98 (274)
183 PLN02389 biotin synthase 27.9 88 0.0019 34.7 5.1 47 57-111 177-230 (379)
184 PRK10658 putative alpha-glucos 27.9 1.4E+02 0.0031 35.6 7.1 65 56-120 284-351 (665)
185 PRK06703 flavodoxin; Provision 27.8 3.8E+02 0.0081 25.0 8.8 101 35-162 46-148 (151)
186 PRK12331 oxaloacetate decarbox 27.2 1.4E+02 0.003 34.0 6.5 56 47-114 88-143 (448)
187 PLN02540 methylenetetrahydrofo 26.9 2.1E+02 0.0046 33.5 8.0 90 60-163 161-259 (565)
188 PRK13209 L-xylulose 5-phosphat 26.8 2.7E+02 0.0059 28.7 8.3 103 52-184 54-161 (283)
189 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.7 1.4E+02 0.003 31.4 6.1 50 52-113 88-137 (275)
190 PF08924 DUF1906: Domain of un 26.5 2E+02 0.0044 27.0 6.6 87 53-163 36-127 (136)
191 cd04883 ACT_AcuB C-terminal AC 26.4 2.2E+02 0.0048 22.6 6.0 55 56-111 14-69 (72)
192 KOG0259 Tyrosine aminotransfer 26.3 79 0.0017 35.1 4.1 81 29-113 156-238 (447)
193 PRK09997 hydroxypyruvate isome 26.3 88 0.0019 32.1 4.5 60 55-114 85-144 (258)
194 PRK08599 coproporphyrinogen II 25.9 92 0.002 34.1 4.7 60 43-109 89-151 (377)
195 TIGR03551 F420_cofH 7,8-dideme 25.8 56 0.0012 35.5 3.0 51 58-111 141-196 (343)
196 PLN02763 hydrolase, hydrolyzin 25.2 1.7E+02 0.0037 36.5 7.2 115 47-162 190-323 (978)
197 PRK07094 biotin synthase; Prov 25.2 63 0.0014 34.5 3.2 51 58-111 129-182 (323)
198 cd07944 DRE_TIM_HOA_like 4-hyd 24.9 1.1E+02 0.0025 31.9 5.0 45 58-114 85-129 (266)
199 cd02848 Chitinase_N_term Chiti 24.8 2.7E+02 0.0059 25.4 6.6 49 460-511 45-94 (106)
200 TIGR01698 PUNP purine nucleoti 24.5 1.1E+02 0.0023 31.9 4.6 41 34-74 47-88 (237)
201 KOG0470 1,4-alpha-glucan branc 24.4 82 0.0018 37.6 4.1 57 58-114 258-331 (757)
202 PRK05265 pyridoxine 5'-phospha 24.3 92 0.002 32.3 4.0 48 55-120 113-161 (239)
203 PTZ00333 triosephosphate isome 24.2 1.6E+02 0.0035 30.9 5.9 49 61-115 82-130 (255)
204 KOG3625 Alpha amylase [Carbohy 24.0 91 0.002 38.2 4.4 85 53-146 140-244 (1521)
205 PF14307 Glyco_tran_WbsX: Glyc 24.0 1.1E+02 0.0025 33.1 5.0 44 29-75 150-195 (345)
206 PTZ00372 endonuclease 4-like p 23.9 4.1E+02 0.0089 30.0 9.3 84 31-115 149-240 (413)
207 KOG1065 Maltase glucoamylase a 23.7 1.4E+02 0.003 36.3 5.8 62 57-123 313-380 (805)
208 PRK04302 triosephosphate isome 23.3 1.4E+02 0.003 30.3 5.2 60 47-116 62-123 (223)
209 TIGR02427 protocat_pcaD 3-oxoa 23.3 1.6E+02 0.0036 28.2 5.6 81 37-130 12-94 (251)
210 PF01075 Glyco_transf_9: Glyco 23.2 54 0.0012 33.0 2.2 78 36-116 103-194 (247)
211 TIGR03700 mena_SCO4494 putativ 23.1 63 0.0014 35.2 2.8 52 57-111 149-205 (351)
212 PRK14565 triosephosphate isome 23.1 1.6E+02 0.0034 30.6 5.5 50 60-115 77-126 (237)
213 PF13380 CoA_binding_2: CoA bi 23.0 1.4E+02 0.003 27.2 4.6 44 52-111 63-106 (116)
214 PF08821 CGGC: CGGC domain; I 22.9 2.3E+02 0.0049 25.7 5.9 56 52-113 49-105 (107)
215 KOG1412 Aspartate aminotransfe 22.9 2E+02 0.0043 31.3 6.2 61 53-125 131-192 (410)
216 cd06570 GH20_chitobiase-like_1 22.9 2.5E+02 0.0053 30.3 7.2 60 52-114 15-88 (311)
217 COG0149 TpiA Triosephosphate i 22.8 1.6E+02 0.0035 30.9 5.5 71 37-115 58-129 (251)
218 cd06568 GH20_SpHex_like A subg 22.8 1.5E+02 0.0033 32.1 5.6 59 53-114 16-95 (329)
219 PRK09875 putative hydrolase; P 22.7 1.8E+02 0.0038 31.1 6.0 62 55-133 34-95 (292)
220 PLN02429 triosephosphate isome 22.7 1.5E+02 0.0034 32.0 5.5 45 61-115 140-188 (315)
221 KOG2566 Beta-glucocerebrosidas 22.7 2.5E+02 0.0054 31.4 7.0 103 66-184 135-259 (518)
222 cd06415 GH25_Cpl1-like Cpl-1 l 22.6 3.8E+02 0.0082 26.5 8.0 43 94-136 108-157 (196)
223 PLN02284 glutamine synthetase 22.2 2.4E+02 0.0051 31.0 7.0 60 61-126 176-247 (354)
224 PF00728 Glyco_hydro_20: Glyco 22.1 1.4E+02 0.003 32.0 5.2 59 53-114 16-93 (351)
225 PRK10422 lipopolysaccharide co 22.0 1.6E+02 0.0035 31.7 5.7 73 42-117 188-274 (352)
226 cd06562 GH20_HexA_HexB-like Be 21.7 3.3E+02 0.0071 29.7 8.0 59 53-114 16-90 (348)
227 PF00121 TIM: Triosephosphate 21.7 62 0.0014 33.6 2.3 50 60-115 76-125 (244)
228 cd00003 PNPsynthase Pyridoxine 21.5 1E+02 0.0023 31.8 3.8 48 55-120 110-158 (234)
229 PRK08195 4-hyroxy-2-oxovalerat 21.3 1.8E+02 0.0038 31.7 5.8 45 58-114 91-135 (337)
230 PF03102 NeuB: NeuB family; I 21.3 1.2E+02 0.0026 31.5 4.2 115 51-205 52-171 (241)
231 COG5520 O-Glycosyl hydrolase [ 21.3 3.2E+02 0.0069 30.3 7.4 85 103-208 111-205 (433)
232 TIGR03234 OH-pyruv-isom hydrox 21.2 1.2E+02 0.0026 30.9 4.3 59 55-114 84-143 (254)
233 COG3684 LacD Tagatose-1,6-bisp 21.2 79 0.0017 33.3 2.8 52 60-114 116-167 (306)
234 PF02606 LpxK: Tetraacyldisacc 21.0 1.9E+02 0.0042 31.3 6.0 63 34-114 224-286 (326)
235 PTZ00372 endonuclease 4-like p 20.9 3.5E+02 0.0077 30.5 8.1 79 58-162 144-228 (413)
236 PF09587 PGA_cap: Bacterial ca 20.9 6.2E+02 0.014 25.8 9.5 79 32-118 123-227 (250)
237 PLN02561 triosephosphate isome 20.9 1.9E+02 0.0041 30.3 5.7 50 60-115 80-129 (253)
238 cd06525 GH25_Lyc-like Lyc mura 20.9 71 0.0015 31.3 2.4 43 94-136 103-149 (184)
239 PRK10076 pyruvate formate lyas 20.9 3.5E+02 0.0077 27.4 7.5 125 55-212 54-209 (213)
240 PRK13347 coproporphyrinogen II 20.6 1.7E+02 0.0037 33.1 5.6 60 43-109 141-203 (453)
241 PRK15447 putative protease; Pr 20.4 2E+02 0.0043 30.8 5.8 58 50-114 10-68 (301)
242 TIGR03217 4OH_2_O_val_ald 4-hy 20.3 1.9E+02 0.0041 31.5 5.7 45 58-114 90-134 (333)
243 COG3623 SgaU Putative L-xylulo 20.2 89 0.0019 32.5 2.9 85 55-160 18-104 (287)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.3e-164 Score=1394.10 Aligned_cols=613 Identities=51% Similarity=0.923 Sum_probs=555.5
Q ss_pred ccceEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHH
Q 006326 22 EGGNVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIK 101 (650)
Q Consensus 22 ~~~~v~~~~~~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~ 101 (650)
...+|++|+++|+|||+|++|+||||||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||+
T Consensus 26 ~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~ 105 (840)
T PLN03059 26 GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK 105 (840)
T ss_pred ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccc
Q 006326 102 EIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIEN 181 (650)
Q Consensus 102 ~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 181 (650)
+|+|+||+|||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++++++++++++||||||+||||
T Consensus 106 la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIEN 185 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIEN 185 (840)
T ss_pred HHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccchhhcCCCcHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCCcccccCCCCCCCCCCccccccCcccc--
Q 006326 182 EYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQTDAPDPVINTCNGMRCGQTFSGPNSPNKPSMWTENWTSLY-- 259 (650)
Q Consensus 182 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf-- 259 (650)
|||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+| +.|. +.++.+|+||||||+|||
T Consensus 186 EYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~-~~f~-~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 186 EYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYC-ENFK-PNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchh-hhcc-cCCCCCCcEEeccCchhHhh
Confidence 999976667778999999999999999999999999998888889999999999 7787 677778999999999999
Q ss_pred --------------------------------eeccCCCCCCCCC-cccccccCCCCcCcCCCCCChhHHHHHHHHHHhh
Q 006326 260 --------------------------------YHGGTNFGRTASA-YIITSYYDQAPLDEYGLTRQPKWGHLKELHGAIN 306 (650)
Q Consensus 260 --------------------------------~hGGTNfG~~~ga-~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~ 306 (650)
||||||||||+|| +++|||||||||+|+|++++|||.|||++|.+++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 9999999999999 5999999999999999985589999999999999
Q ss_pred hccccccCCCCCCCCCCcccceeeeecccCCcceeeeecCCCCCCcceEEecccccccCCcceeecCCCceeeeccceec
Q 006326 307 SCSETLLQGNPSNFSLGQLQEAYVFEEEAGGGCVAFLINNDGRDDNATVQFRNMSFQLPPKSISILPDCINVIFNTAKVN 386 (650)
Q Consensus 307 ~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~v~ 386 (650)
.+++.|+..+|....+|+.+|+++|... + .|+||+.|.+++ .+.+|+|+|++|.||||||+|||||++++|||++++
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~-~-~caaFl~n~~~~-~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~ 420 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSK-S-ACAAFLANYDTK-YSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLG 420 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCc-c-chhhheeccCCC-CceeEEECCcccccCccceeecccccceeeeccccc
Confidence 9998888888877899999999999865 3 699999999866 678999999999999999999999999999999999
Q ss_pred eeecceeccccccchhhhhhhccccc-ccCCCCCCCCccchhhhhcCCCCCCceEEEEEeecCCCC------CCCCeEee
Q 006326 387 VEYNERRTNVSEVFNEAERWQQFKDL-IPNFLDTPLKADTLLEHMNTTKDKSDYLWYTFSFQTNSS------CTEPVLHV 459 (650)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~p~~~Eql~~t~d~~GyllY~t~i~~~~~------~~~~~L~i 459 (650)
.|++.+++.+.. +.+.|+++.|+ ++...+.++....++||+++|+|.+||+||+|+|..... +..++|++
T Consensus 421 ~q~~~~~~~~~~---~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v 497 (840)
T PLN03059 421 AQSSQMKMNPVG---STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTI 497 (840)
T ss_pred cccceeeccccc---ccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEE
Confidence 998776554321 23689999998 444445677788899999999999999999999974221 23467999
Q ss_pred cCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEEEEecCCCcCccccccccccceeE-EEEccccCCcc
Q 006326 460 ESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSGAFLEKRFAGLAT-VEIHCGDMENS 538 (650)
Q Consensus 460 ~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG~~~~~~~KGI~g-V~L~g~~~~~~ 538 (650)
.+++|++||||||+++|+++++..+..++++.+++++.|.|+|+||||||||+|||++|+++.|||+| |+|++. +.++
T Consensus 498 ~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~-~~g~ 576 (840)
T PLN03059 498 FSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGL-NEGT 576 (840)
T ss_pred cccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecc-cCCc
Confidence 99999999999999999999987777788887788888999999999999999999999999999999 999997 7777
Q ss_pred ccccCceeeeeeccCcccceeeccccccCCCCCCcccccccCCCCCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECC
Q 006326 539 YNFTNNYTWGYEVGLLGEKLQIYNTEQNLENAPEWTKIDQDLSSKQPLTWYKTAFDAPVGDDPVALNLSSMGKGEAWVNG 618 (650)
Q Consensus 539 ~~L~~w~~W~~~l~L~ge~~~~~~~~~~~~~~~~w~~~~~~~~~~~~p~fYk~tF~l~~~~d~t~Ld~~g~gKG~vwVNG 618 (650)
.+|++| .|.|+++|+||.++++.+++ ...++|.+.+ ..+..+||+|||++|++|++.|||||||++||||+|||||
T Consensus 577 ~dls~~-~W~y~lgL~GE~~~i~~~~~--~~~~~W~~~~-~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG 652 (840)
T PLN03059 577 RDLSGW-KWSYKIGLKGEALSLHTITG--SSSVEWVEGS-LLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWING 652 (840)
T ss_pred eecccC-ccccccCccceeccccccCC--CCCccccccc-cccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECC
Confidence 899977 48899999999999988754 4578897754 3334567999999999999999999999999999999999
Q ss_pred eeeeeccccc--------------------ccCCCCceEEEeecCcccc
Q 006326 619 LSVGRYWVSF--------------------YTSEGNSSQTLYVYIYFLH 647 (650)
Q Consensus 619 ~nlGRYW~~~--------------------~~~~~GPQqtlY~VP~~l~ 647 (650)
+||||||+.+ .++||||||||||||+.++
T Consensus 653 ~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~L 701 (840)
T PLN03059 653 QSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWL 701 (840)
T ss_pred cccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHh
Confidence 9999999641 1235899999999999554
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-138 Score=1140.04 Aligned_cols=560 Identities=54% Similarity=0.980 Sum_probs=510.6
Q ss_pred cceEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHH
Q 006326 23 GGNVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKE 102 (650)
Q Consensus 23 ~~~v~~~~~~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~ 102 (650)
.+.|++|+++|.|||+|++++||+|||+|++|++|+|+|+|||++|+|+|+||||||+|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc
Q 006326 103 IQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE 182 (650)
Q Consensus 103 a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 182 (650)
|++.||+|+||+||||||||++||+|.||...|++.+|++|++|++++++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999998999999999999999999999999999999 699999999999999999
Q ss_pred cccchhhcCCCcHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCCcccccCCCCCCCCCCccccccCcccc---
Q 006326 183 YQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQTDAPDPVINTCNGMRCGQTFSGPNSPNKPSMWTENWTSLY--- 259 (650)
Q Consensus 183 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf--- 259 (650)
||.+...|++..++|+.|-..++...+.+|||+||.+.|+|+.++++|||++|.+.|..+++|++|+||||+|+|||
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred -------------------------------eeccCCCCCCCCCcccccccCCCCcCcCCCCCChhHHHHHHHHHHhhhc
Q 006326 260 -------------------------------YHGGTNFGRTASAYIITSYYDQAPLDEYGLTRQPKWGHLKELHGAINSC 308 (650)
Q Consensus 260 -------------------------------~hGGTNfG~~~ga~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~~~ 308 (650)
||||||||++||.+.+|||||||||| |.+++|||.|+|.+|..+..|
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 99999999999999999999999999 999999999999999999999
Q ss_pred cccccCCCCCCCCCCcccceeeeecccCCcceeeeecCCCCCCcceEEecccccccCCcceeecCCCceeeeccceecee
Q 006326 309 SETLLQGNPSNFSLGQLQEAYVFEEEAGGGCVAFLINNDGRDDNATVQFRNMSFQLPPKSISILPDCINVIFNTAKVNVE 388 (650)
Q Consensus 309 ~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~v~~~ 388 (650)
++.+..+++....+++.+ +.|++||.|+++. .+..+.|++..|.+|+|+|+|||||++++|||+++..+
T Consensus 333 ep~lv~gd~~~~kyg~~~----------~~C~~Fl~n~~~~-~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~ 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR----------EACAAFLSNNNGA-PAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ 401 (649)
T ss_pred CccccccCcccccccchh----------hHHHHHHhcCCCC-CCCccccCCCccccCceeEEechhhcchhhhccccccc
Confidence 999888886544555444 3599999999977 67889999999999999999999999999999988532
Q ss_pred ecceeccccccchhhhhhhcccccccCCCCCCCCccchhhhhcCCCCCCceEEEEEeecCCCCCCCCeEeec-CcceEEE
Q 006326 389 YNERRTNVSEVFNEAERWQQFKDLIPNFLDTPLKADTLLEHMNTTKDKSDYLWYTFSFQTNSSCTEPVLHVE-SLAHVAH 467 (650)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~Eql~~t~d~~GyllY~t~i~~~~~~~~~~L~i~-~~~D~a~ 467 (650)
|....|+ .++|..+| .+||++|+|.++.+.. ....|+|. +++|++|
T Consensus 402 -----------------~~~~~e~------------~~~~~~~~---~~~~ll~~~~~t~d~s-d~t~~~i~ls~g~~~h 448 (649)
T KOG0496|consen 402 -----------------WISFTEP------------IPSEAVGQ---SFGGLLEQTNLTKDKS-DTTSLKIPLSLGHALH 448 (649)
T ss_pred -----------------cccccCC------------CccccccC---cceEEEEEEeeccccC-CCceEeecccccceEE
Confidence 4334444 34666665 5899999999976542 24568888 9999999
Q ss_pred EEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEEEEecCCCcCccccccccccceeE-EEEccccCCccccccCcee
Q 006326 468 AFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSGAFLEKRFAGLAT-VEIHCGDMENSYNFTNNYT 546 (650)
Q Consensus 468 Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG~~~~~~~KGI~g-V~L~g~~~~~~~~L~~w~~ 546 (650)
|||||+++|+++++.....+++..++.+..|.|+|+|||||+||+||| +++++.|||+| |+|+|. ++++ |+.
T Consensus 449 VfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~-----~~l~-~~~ 521 (649)
T KOG0496|consen 449 VFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL-----IDLT-WTK 521 (649)
T ss_pred EEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee-----eccc-eee
Confidence 999999999999987777778888888999999999999999999999 88899999999 999988 5666 999
Q ss_pred eeeeccCcccceeeccccccCCCCCCcccccccCCCCCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECCeeeeeccc
Q 006326 547 WGYEVGLLGEKLQIYNTEQNLENAPEWTKIDQDLSSKQPLTWYKTAFDAPVGDDPVALNLSSMGKGEAWVNGLSVGRYWV 626 (650)
Q Consensus 547 W~~~l~L~ge~~~~~~~~~~~~~~~~w~~~~~~~~~~~~p~fYk~tF~l~~~~d~t~Ld~~g~gKG~vwVNG~nlGRYW~ 626 (650)
|.|+++|.+|++..+..++ ..+++|...+ ..+..+|.+||+ +|++|++.+||||||.|||||+|||||+||||||+
T Consensus 522 w~~~~gl~ge~~~~~~~~~--~~~v~w~~~~-~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~ 597 (649)
T KOG0496|consen 522 WPYKVGLKGEKLGLHTEEG--SSKVKWKKLS-NTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWP 597 (649)
T ss_pred cceecccccchhhcccccc--ccccceeecc-CcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccC
Confidence 9999999999999998876 6778898765 333346788888 99999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEeecCcccc
Q 006326 627 SFYTSEGNSSQTLYVYIYFLH 647 (650)
Q Consensus 627 ~~~~~~~GPQqtlY~VP~~l~ 647 (650)
++ |||+ .||||++++
T Consensus 598 ~~-----G~Q~-~yhvPr~~L 612 (649)
T KOG0496|consen 598 SF-----GPQR-TYHVPRSWL 612 (649)
T ss_pred CC-----CCce-EEECcHHHh
Confidence 99 9965 566999443
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.7e-80 Score=658.37 Aligned_cols=265 Identities=38% Similarity=0.702 Sum_probs=202.6
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 32 SLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 32 ~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcC
Q 006326 112 LTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFG 191 (650)
Q Consensus 112 lr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 191 (650)
|||||||||||++||+|.||.+++++++|++||.|++++++|+++|++++++ +++++||||||+|||||||. +
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~GGpII~vQvENEyg~----~- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKP--LQYTNGGPIIMVQVENEYGS----Y- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGG--GBGGGTSSEEEEEESSSGGC----T-
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHh--hhhcCCCceehhhhhhhhCC----C-
Confidence 9999999999999999999999999999999999999999999999999995 88999999999999999994 2
Q ss_pred CCcHHHHHHHHHHHHhcCCc-cceEEeccCC--------CCccccccCCCCccccc----CC--CCCCCCCCccccccCc
Q 006326 192 EAGPSYVRWAAKMAVELETG-VPWVMCKQTD--------APDPVINTCNGMRCGQT----FS--GPNSPNKPSMWTENWT 256 (650)
Q Consensus 192 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~~----~~--~~~~~~~P~~~~E~~~ 256 (650)
.++++||+.|++++++.+++ +++++++... .++..+.+++++.|.+. |. ...+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 38999999999999999998 6677776431 22323445555666432 11 1346889999999999
Q ss_pred ccc---------------------------------eeccCCCCCCCCCcc-----cccccCCCCcCcCCCCCChhHHHH
Q 006326 257 SLY---------------------------------YHGGTNFGRTASAYI-----ITSYYDQAPLDEYGLTRQPKWGHL 298 (650)
Q Consensus 257 Gwf---------------------------------~hGGTNfG~~~ga~~-----~TSYDYdApl~E~G~~~tpKy~~l 298 (650)
||| ||||||||+++|+.. +|||||+|||+|+|++ ||||.+|
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~l 312 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYEL 312 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHH
Confidence 999 999999999999843 4999999999999998 7999999
Q ss_pred HHHHHH
Q 006326 299 KELHGA 304 (650)
Q Consensus 299 r~l~~~ 304 (650)
|+||++
T Consensus 313 r~l~~~ 318 (319)
T PF01301_consen 313 RRLHQK 318 (319)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=327.31 Aligned_cols=173 Identities=29% Similarity=0.476 Sum_probs=152.2
Q ss_pred EEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCCccCCCCceeeeccchhHHHHHHHHH
Q 006326 26 VTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQT-YVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ 104 (650)
Q Consensus 26 v~~~~~~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~-yv~W~~hEp~~G~~df~g~~dl~~fl~~a~ 104 (650)
|.+++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.|++|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3568889999999999999999999999999999999999999999999 89999999999999999 66777 899999
Q ss_pred HcCCEEEEecCc-ccccccCCCCCCceeccCCCeeee---------cCChhHHHHHHHHHHHHHHHHHhcCcccccCCce
Q 006326 105 AQGLYACLTIGP-FIESEWTYGGFPFWLHDVPNIVYR---------TDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPI 174 (650)
Q Consensus 105 ~~Gl~vilr~GP-yi~aE~~~gg~P~WL~~~p~~~~R---------~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 174 (650)
+.||+||||||| ..|.+|...+.|+||..++.-..| .+++-|++++++++.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876653333 346678888888655555553 5789999
Q ss_pred EEeccccccccchhhcCCCcHHHHHHHHHHHH
Q 006326 175 ILSQIENEYQNIEKAFGEAGPSYVRWAAKMAV 206 (650)
Q Consensus 175 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 206 (650)
|+||+|||||++.|.|+.|.+.|+.||++.|.
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg 184 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYG 184 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcc
Confidence 99999999999766666799999999999994
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=1.3e-22 Score=220.66 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=113.1
Q ss_pred EecCCCCCcccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCC
Q 006326 46 SIHYPRSTPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTY 124 (650)
Q Consensus 46 ~~hy~r~~~~~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~ 124 (650)
+++|.+++++.|+++|++||++|+|+|++. +.|+.+||+||+|||+ .||++|++|+++||+|||+++ .
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------c
Confidence 367788999999999999999999999975 5699999999999999 899999999999999999974 5
Q ss_pred CCCCceecc-CCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccch
Q 006326 125 GGFPFWLHD-VPNIVY----------------RTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIE 187 (650)
Q Consensus 125 gg~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~ 187 (650)
+..|.||.+ +|++.. ..++|.|++++++++++|+++++++ +.||+|||+||+|...
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~ 142 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHR 142 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCc
Confidence 779999986 788643 1346889999999999999998764 4799999999999753
Q ss_pred hhcCCCcHHHHHHHHHHHHh
Q 006326 188 KAFGEAGPSYVRWAAKMAVE 207 (650)
Q Consensus 188 ~~~~~~~~~y~~~l~~~~~~ 207 (650)
+.+..|.++|++||+++|.+
T Consensus 143 ~~~~~~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGT 162 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 22224788999999999964
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.13 E-value=1.1e-09 Score=115.88 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=106.4
Q ss_pred EEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHH
Q 006326 26 VTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKF 99 (650)
Q Consensus 26 v~~~~~~~~i~g~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~f 99 (650)
|.+.++.|+|||||+.+.|...|... .+++.|+.+|++||++|+|+||+ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 56789999999999999999999653 47888999999999999999999 66664 2789
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 100 IKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 100 l~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
+++|.+.||.|+..+.=.-++.|..-|. ......|+.+.+.+.+-+++++++.+.| +.||||=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 9999999999997752111222221111 1245678899998888888888887755 58999999
Q ss_pred ccccccchhhcCCCcHHHHHHHHHHHHhcCCccceEEe
Q 006326 180 ENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMC 217 (650)
Q Consensus 180 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 217 (650)
-||-. ...+++.|.+.+++..-+=|+...
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeec
Confidence 99993 246778888888887665565433
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.94 E-value=1.5e-08 Score=117.36 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=110.4
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHH
Q 006326 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (650)
Q Consensus 24 ~~v~~~~~~~~i~g~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~ 97 (650)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .|-|. =+
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4688899999999999999999988542 46778999999999999999999 45553 26
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceec-------c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccc
Q 006326 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH-------D-VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYAS 169 (650)
Q Consensus 98 ~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~-------~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~ 169 (650)
+|+++|.|.||+|+-... . -|+..|.. + .+.......+|.++++..+-+++++++.+
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999998752 1 11222221 1 11111123456677766666666665554
Q ss_pred cCCceEEeccccccccchhhcCCCcHHHHHHHHHHHHhcCCccceEE
Q 006326 170 QGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVM 216 (650)
Q Consensus 170 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 216 (650)
|++.||||-+-||.... ......|.+.|.+.+++...+=|+..
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~ 447 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTC 447 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEE
Confidence 55699999999997531 11345677788888887765545443
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.91 E-value=2.1e-08 Score=103.56 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=108.4
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccC-CCCce-eeeccchhHHHHHHHHHHcCCEEEE
Q 006326 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-PQPGE-YDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 35 i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hE-p~~G~-~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
.+|+++.+.+-+.|.... ..-++++++||++|+|+||+.+.|...+ +.++. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 379999999999993221 2678899999999999999999995554 67664 6655566899999999999999999
Q ss_pred ecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhh--c
Q 006326 113 TIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKA--F 190 (650)
Q Consensus 113 r~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 190 (650)
.+= ..|.|....... ...+...+...++++.|+++++. ..+|++++|=||....... .
T Consensus 81 d~h----------~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----------NAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----------ESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----------cCcccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCcccc
Confidence 852 126773321110 11223344445566667777653 3479999999999864210 0
Q ss_pred C----CCcHHHHHHHHHHHHhcCCccceEEe
Q 006326 191 G----EAGPSYVRWAAKMAVELETGVPWVMC 217 (650)
Q Consensus 191 ~----~~~~~y~~~l~~~~~~~g~~vp~~~~ 217 (650)
. ..-.++.+.+.+..|+.+.+.+++..
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 0 01135556666667777777666654
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.89 E-value=4.9e-08 Score=118.78 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=102.0
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCC------CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHH
Q 006326 24 GNVTYDGRSLIIDGQRKILFSGSIHYP------RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (650)
Q Consensus 24 ~~v~~~~~~~~i~g~~~~~~sg~~hy~------r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~ 97 (650)
.+|++++..|+|||+|+++.|...|.. +++++.++++|+.||++|+|+||+ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 467778889999999999999999843 357888999999999999999999 35554 26
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006326 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (650)
Q Consensus 98 ~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 177 (650)
+|+++|-|.||+|+-... . |. .|-.|. . .-.+||.|.+++.+=+++++.+. .|++.||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e~-hg~~~~---~-----~~~~dp~~~~~~~~~~~~mV~Rd-------rNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---ET-HGMVPM---N-----RLSDDPRWLPAMSERVTRMVQRD-------RNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---cc-cCCccc---c-----CCCCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEE
Confidence 889999999999998852 1 11 111121 0 01456778776555455555554 456799999
Q ss_pred ccccccccchhhcCCCcHHHHHHHHHHHHhcCCccceE
Q 006326 178 QIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWV 215 (650)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 215 (650)
=+-||-|. +. ..+.+.+.+++..-+=|+.
T Consensus 458 SlgNE~~~-----g~----~~~~l~~~~k~~DptRpV~ 486 (1027)
T PRK09525 458 SLGNESGH-----GA----NHDALYRWIKSNDPSRPVQ 486 (1027)
T ss_pred eCccCCCc-----Ch----hHHHHHHHHHhhCCCCcEE
Confidence 99999763 21 2344555555544443443
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=8.3e-08 Score=113.13 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=104.3
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC-----C-CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHH
Q 006326 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR-----S-TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (650)
Q Consensus 24 ~~v~~~~~~~~i~g~~~~~~sg~~hy~r-----~-~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~ 97 (650)
.+|.+++..|.|||||+++-|..-|.+- . .++.-+++|++||++|+|+|+|- |-|. =+
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 4688888899999999999999999774 3 34447899999999999999993 7776 37
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006326 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (650)
Q Consensus 98 ~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 177 (650)
.|+++|.+.||+||-.+ ..||.. .| +|+.|++.+..=+++++++.+. ++.||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~kn-------HPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRN-------HPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccC-------CCcEEEE
Confidence 89999999999999985 233332 22 7888998888777777777664 4589999
Q ss_pred ccccccccchhhcCCCcHHHHHHHHHHH
Q 006326 178 QIENEYQNIEKAFGEAGPSYVRWAAKMA 205 (650)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 205 (650)
=+.||-|. |.....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999873 333444445555444
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.74 E-value=9.5e-08 Score=116.40 Aligned_cols=237 Identities=14% Similarity=0.102 Sum_probs=141.8
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHH
Q 006326 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (650)
Q Consensus 24 ~~v~~~~~~~~i~g~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~ 97 (650)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+||+ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 4677788999999999999999988442 36788999999999999999999 35554 26
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006326 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (650)
Q Consensus 98 ~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 177 (650)
+|+++|.|.||+|+-.. |..|..|...+ +...-+++|.|.++..+=+++++++. .|++.||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQ-------KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEE
Confidence 89999999999999875 33232221100 11112466777665444444554444 466799999
Q ss_pred ccccccccchhhcCCCcHHHHHHHHHHHHhcCCccceEEeccCCCC--ccccccCCCCc--ccccCCCCCCCCCCccccc
Q 006326 178 QIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQTDAP--DPVINTCNGMR--CGQTFSGPNSPNKPSMWTE 253 (650)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~--~~~~~~~ng~~--~~~~~~~~~~~~~P~~~~E 253 (650)
=+-||-+. + . .++.+.+.+++..-+=| +++.+.... .+++...-+.. + ..+. ...+++|.+.+|
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~-v~~~~~~~~~~~Dv~~~~Y~~~~~~-~~~~-~~~~~kP~i~~E 512 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRL-VHYEEDRDAEVVDVISTMYTRVELM-NEFG-EYPHPKPRILCE 512 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCce-EEeCCCcCccccceeccccCCHHHH-HHHH-hCCCCCcEEEEc
Confidence 99999763 2 1 23556666666554434 343321110 11111111110 1 1111 123568999998
Q ss_pred c------Ccccc------------eeccCCCCCCCCC---------------------cccccccCCCCcCcCCCCCChh
Q 006326 254 N------WTSLY------------YHGGTNFGRTASA---------------------YIITSYYDQAPLDEYGLTRQPK 294 (650)
Q Consensus 254 ~------~~Gwf------------~hGGTNfG~~~ga---------------------~~~TSYDYdApl~E~G~~~tpK 294 (650)
+ -.|.+ +.||-=|-+.--+ .-..++--+..++-+|.+ .|+
T Consensus 513 y~hamgn~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p-~p~ 591 (1021)
T PRK10340 513 YAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTP-GPG 591 (1021)
T ss_pred hHhccCCCCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCC-Chh
Confidence 6 22322 3444333221100 001122223678888986 899
Q ss_pred HHHHHHHHHHhh
Q 006326 295 WGHLKELHGAIN 306 (650)
Q Consensus 295 y~~lr~l~~~~~ 306 (650)
|.+.|.+.+-++
T Consensus 592 ~~e~k~~~~pv~ 603 (1021)
T PRK10340 592 LKEYKQVIAPVK 603 (1021)
T ss_pred HHHHHHhcceEE
Confidence 999999876544
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.74 E-value=1.7e-08 Score=91.77 Aligned_cols=61 Identities=25% Similarity=0.534 Sum_probs=45.0
Q ss_pred CCCceEEEEEEeCCCCCCCeE-Eee--CCCceEEEEECCeeeeecccccccCCCCceEEEeecCcccccC
Q 006326 583 KQPLTWYKTAFDAPVGDDPVA-LNL--SSMGKGEAWVNGLSVGRYWVSFYTSEGNSSQTLYVYIYFLHTY 649 (650)
Q Consensus 583 ~~~p~fYk~tF~l~~~~d~t~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~~~GPQqtlY~VP~~l~~~ 649 (650)
..+..|||++|+....+..+. |.. +...+++|||||++|||||+.+ |||+++. ||+++++.
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf~-~p~~il~~ 96 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTFS-VPAGILKY 96 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEEE-E-BTTBTT
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEEE-eCceeecC
Confidence 357899999996432221223 333 4577999999999999999889 9998777 99987764
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.67 E-value=8.7e-08 Score=87.13 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=59.3
Q ss_pred hhhhhcCCCCCCceEEEEEeecCCCCCCCCe-Eeec-CcceEEEEEECCeEEEEEEc-ccCcceeEEEeecc-cCCCCcE
Q 006326 426 LLEHMNTTKDKSDYLWYTFSFQTNSSCTEPV-LHVE-SLAHVAHAFVNNIYAGAAHG-NHDVKKFTMDIPIG-LNDGMNN 501 (650)
Q Consensus 426 ~~Eql~~t~d~~GyllY~t~i~~~~~~~~~~-L~i~-~~~D~a~Vfvng~~vG~~~~-~~~~~~~~~~~~~~-l~~g~~~ 501 (650)
+.+..+..+++.|++|||++|.......... |.+. +.+++++|||||.++|+... ...+ .++++|.. |+.+.+.
T Consensus 23 ~~l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q--~tf~~p~~il~~~n~v 100 (111)
T PF13364_consen 23 PVLYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQ--TTFSVPAGILKYGNNV 100 (111)
T ss_dssp SSTCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECC--EEEEE-BTTBTTCEEE
T ss_pred ceeccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCcc--EEEEeCceeecCCCEE
Confidence 3566666677999999999997532112333 4554 78999999999999999883 2222 55666642 5556789
Q ss_pred EEEEEecCCC
Q 006326 502 ISILSVMAGL 511 (650)
Q Consensus 502 L~ILvEn~Gr 511 (650)
|.+|+++||+
T Consensus 101 ~~vl~~~~g~ 110 (111)
T PF13364_consen 101 LVVLWDNMGH 110 (111)
T ss_dssp EEEEEE-STT
T ss_pred EEEEEeCCCC
Confidence 9999999996
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.18 E-value=5.2e-06 Score=86.05 Aligned_cols=116 Identities=19% Similarity=0.343 Sum_probs=88.0
Q ss_pred CCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHH
Q 006326 78 WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKI 157 (650)
Q Consensus 78 W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 157 (650)
|...||++|+|||+ .++++++.|+++||.| |..+- =|.. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 32222 2544 6899987533 345678888999999
Q ss_pred HHHHHhcCcccccCCceEEeccccccccch-------hhcCCCcHHHHHHHHHHHHhcCCccceEEec
Q 006326 158 VNLMKSSGLYASQGGPIILSQIENEYQNIE-------KAFGEAGPSYVRWAAKMAVELETGVPWVMCK 218 (650)
Q Consensus 158 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 218 (650)
+.+++ |.|..|+|=||--+.. ..+...+.+|+...-+.+++...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88876 4689999999954321 0111234578888888999888888888875
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.09 E-value=3.9e-05 Score=80.92 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=86.9
Q ss_pred ccceEEEeCCeEE--ECCeEeEEEEEEecCCCC-----------CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCcee
Q 006326 22 EGGNVTYDGRSLI--IDGQRKILFSGSIHYPRS-----------TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEY 88 (650)
Q Consensus 22 ~~~~v~~~~~~~~--i~g~~~~~~sg~~hy~r~-----------~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~ 88 (650)
.-..|+..++.|+ .+|++|.|.|-.+.+... .++.|++++..||++|+|||++|-. .|.
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v----dp~---- 78 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV----DPS---- 78 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT----
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe----CCC----
Confidence 4567888999998 799999999988876533 4578999999999999999999832 222
Q ss_pred eeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCCh--hHH-HHHHHHHHHHHHHHHhcC
Q 006326 89 DFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNE--PFK-FYMQNFTTKIVNLMKSSG 165 (650)
Q Consensus 89 df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~--~y~-~~~~~~~~~l~~~l~~~~ 165 (650)
.|=++++++.+++|||||+..+. |...+-..+| .|- ...++|+ +++..++++
T Consensus 79 -----~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y- 133 (314)
T PF03198_consen 79 -----KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYF-AVIDAFAKY- 133 (314)
T ss_dssp -----S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHH-HHHHHHTT--
T ss_pred -----CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHH-HHHHHhccC-
Confidence 36799999999999999999642 2222333444 442 2233333 355666654
Q ss_pred cccccCCceEEeccccccccchh--hcCCCcHHHHHHHHHHHHhcCC-ccceE
Q 006326 166 LYASQGGPIILSQIENEYQNIEK--AFGEAGPSYVRWAAKMAVELET-GVPWV 215 (650)
Q Consensus 166 ~~~~~gGpII~~QiENEyg~~~~--~~~~~~~~y~~~l~~~~~~~g~-~vp~~ 215 (650)
.+++++=+-||.-.... .-.++-++..+.+|+-.++.+. .||+=
T Consensus 134 ------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVG 180 (314)
T PF03198_consen 134 ------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVG 180 (314)
T ss_dssp ------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EE
T ss_pred ------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 38999999999875321 0011345556666666666665 45653
No 16
>TIGR03356 BGL beta-galactosidase.
Probab=97.85 E-value=3.5e-05 Score=85.92 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|+++++.||++|+|++|+-|.|+-.+|. +|++|.+|....+.+|+.|.++||.+|+-.=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 458999999999999999999999999999 78999888889999999999999998877522 248999876
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 3466667777777777777764
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.81 E-value=0.00012 Score=70.50 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCCCceEEEEEeecCCC--CCCCCeEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCC-cEEEEEEecCC
Q 006326 434 KDKSDYLWYTFSFQTNS--SCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGM-NNISILSVMAG 510 (650)
Q Consensus 434 ~d~~GyllY~t~i~~~~--~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~G 510 (650)
....|+.|||++|.-+. .+....|.+.++.+.+.|||||+++|...+.. .++.++++-.++.|. |+|.|.|.+..
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v~~~~ 141 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRVDNWP 141 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEEESSS
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEEeecC
Confidence 34689999999996321 12456788999999999999999999977543 245566665578887 99999999655
Q ss_pred CcCccccc-cccccceeE-EEEc
Q 006326 511 LPDSGAFL-EKRFAGLAT-VEIH 531 (650)
Q Consensus 511 r~NyG~~~-~~~~KGI~g-V~L~ 531 (650)
.-.+-+.+ .....||.+ |.|.
T Consensus 142 ~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 142 DGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp GGGCGBSSSEEE--EEESEEEEE
T ss_pred CCceeecCcCCccCccccEEEEE
Confidence 43221111 124579988 8773
No 18
>PLN02705 beta-amylase
Probab=97.68 E-value=0.00012 Score=82.47 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=81.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCE--EEEecCcccccccCCC-----
Q 006326 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLY--ACLTIGPFIESEWTYG----- 125 (650)
Q Consensus 54 ~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~--vilr~GPyi~aE~~~g----- 125 (650)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 344678899999999999999999999998 799999995 78889999999999 45554 33544 222
Q ss_pred CCCceecc----CCCeeeec--------------CChh------HHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 126 GFPFWLHD----VPNIVYRT--------------DNEP------FKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 126 g~P~WL~~----~p~~~~R~--------------~~~~------y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
-||.|+.+ +|+|.+-. ++.+ -++....|++.....+++ ++ .+|-|.-+||
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~--fl--~~g~I~eI~V 414 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDD--LF--VEGLITAVEI 414 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHH--hc--cCCceeEEEe
Confidence 28999974 68875421 1111 124444555555555553 21 3467888877
No 19
>PLN02905 beta-amylase
Probab=97.67 E-value=0.00015 Score=81.94 Aligned_cols=79 Identities=16% Similarity=0.419 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC-----C
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG-----G 126 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~v--ilr~GPyi~aE~~~g-----g 126 (650)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 33567899999999999999999999998 899999995 788899999999994 4554 33443 222 2
Q ss_pred CCceecc----CCCeee
Q 006326 127 FPFWLHD----VPNIVY 139 (650)
Q Consensus 127 ~P~WL~~----~p~~~~ 139 (650)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 688754
No 20
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.65 E-value=0.00047 Score=73.05 Aligned_cols=150 Identities=23% Similarity=0.394 Sum_probs=88.6
Q ss_pred CCeEE-ECCeEeEEEEEEecCC---CCCcccHHHHHHHHHHcCCCEEEEcee--CCcc-C-------C----CCceeeec
Q 006326 30 GRSLI-IDGQRKILFSGSIHYP---RSTPQMWPSLIAKAKEGGLHVIQTYVF--WNLH-E-------P----QPGEYDFG 91 (650)
Q Consensus 30 ~~~~~-i~g~~~~~~sg~~hy~---r~~~~~W~~~l~k~k~~G~NtV~~yv~--W~~h-E-------p----~~G~~df~ 91 (650)
++.|. -||+||+.++ .-.+. |...+.|+.-|+..|+.|||+|++=++ |..+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45565 7999999998 54443 567899999999999999999999876 5433 1 1 12236766
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEEec---CcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 92 GR-----YDLVKFIKEIQAQGLYACLTI---GPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 92 g~-----~dl~~fl~~a~~~Gl~vilr~---GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
.- ..+++.|+.|.+.||.+.|-| +||.-+-|..| |.-+ =.+.+++|.+-|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 43 479999999999999976543 34444445443 1111 136788999999999996
Q ss_pred cCcccccCCceEEeccccccccchhhcCCCcHHHHHHHHHHHHhcC
Q 006326 164 SGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELE 209 (650)
Q Consensus 164 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 209 (650)
.+ +|| |=+-||+ . ......++-+.+.+.+++..
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~d 177 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKEND 177 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH-
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhC
Confidence 43 466 6689999 1 23366777778888887754
No 21
>PLN02161 beta-amylase
Probab=97.65 E-value=0.00018 Score=79.75 Aligned_cols=116 Identities=20% Similarity=0.380 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCC-----CCC
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYG-----GFP 128 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~g-----g~P 128 (650)
+.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++.+--.=--|+- +-| -||
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP 192 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCC
Confidence 34567899999999999999999999998 899999995 78889999999999543332234433 122 289
Q ss_pred ceecc----CCCeeeecC--------------C-hhH-----HHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 129 FWLHD----VPNIVYRTD--------------N-EPF-----KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 129 ~WL~~----~p~~~~R~~--------------~-~~y-----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
.|+.+ +|+|.+... + |.+ ++..+.|++.....+++ +. ++-|.-+||
T Consensus 193 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~~---~~~I~eI~V 262 (531)
T PLN02161 193 LWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEP--YI---GNVIEEISI 262 (531)
T ss_pred HHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 99974 688755321 1 111 23445556666666663 32 467888877
No 22
>PLN02801 beta-amylase
Probab=97.60 E-value=0.0002 Score=79.51 Aligned_cols=117 Identities=21% Similarity=0.424 Sum_probs=81.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG---- 125 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~v--ilr~GPyi~aE~~~g---- 125 (650)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..++.++++++||++ ||.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455688999999999999999999999997 699999995 788899999999995 5554 33443 222
Q ss_pred -CCCceecc----CCCeeeecC----ChhH----------------HHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 126 -GFPFWLHD----VPNIVYRTD----NEPF----------------KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 126 -g~P~WL~~----~p~~~~R~~----~~~y----------------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
-+|.|+.+ +|++.+... |+.| ++....|++.....+++ + -.+|-|..+||
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~--l~~~~I~eI~V 183 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD--F--LEAGVIIDIEV 183 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH--h--ccCCeeEEEEE
Confidence 28999974 678744211 1111 23444555555555553 2 23467888877
No 23
>PLN00197 beta-amylase; Provisional
Probab=97.58 E-value=0.00023 Score=79.61 Aligned_cols=116 Identities=22% Similarity=0.450 Sum_probs=81.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG---- 125 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~v--ilr~GPyi~aE~~~g---- 125 (650)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3445688999999999999999999999998 899999995 788899999999994 4554 33443 222
Q ss_pred -CCCceecc----CCCeeeecC--------------C-hhH-----HHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 126 -GFPFWLHD----VPNIVYRTD--------------N-EPF-----KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 126 -g~P~WL~~----~p~~~~R~~--------------~-~~y-----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
-||.|+.+ +|++.+... + |.+ ++....|++.....+++ ++ ++.|.-+||
T Consensus 199 IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~--~l---~~~I~eI~V 272 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKH--LL---GDTIVEIQV 272 (573)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceeEEEe
Confidence 28999974 688754211 1 111 24445555555555553 22 246888887
No 24
>PLN02803 beta-amylase
Probab=97.57 E-value=0.00026 Score=78.98 Aligned_cols=114 Identities=19% Similarity=0.424 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC-----C
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG-----G 126 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~dl~~fl~~a~~~Gl~v--ilr~GPyi~aE~~~g-----g 126 (650)
+.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-| -
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~Ip 180 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34577899999999999999999999998 599999995 788899999999995 4554 33443 222 2
Q ss_pred CCceecc----CCCeeeecC----Ch-----------hH-----HHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 127 FPFWLHD----VPNIVYRTD----NE-----------PF-----KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 127 ~P~WL~~----~p~~~~R~~----~~-----------~y-----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
||.|+.+ +|+|.+... |. .+ ++....|++.....+++ +. ++-|..+||
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~l---~~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKD--YL---GGVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 8999974 688754211 11 11 23344556666666663 32 468888887
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.48 E-value=0.00018 Score=78.34 Aligned_cols=113 Identities=16% Similarity=0.307 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccc----cCCCCCCcee
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE----WTYGGFPFWL 131 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE----~~~gg~P~WL 131 (650)
-+..|+++|++|+..|.+.|-|.+.|.+ |++|||+| .+++.++++++||++.+-..=--|+- .-+=-||.|+
T Consensus 18 ~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv 94 (402)
T PF01373_consen 18 LEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWV 94 (402)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHH
T ss_pred HHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHH
Confidence 4678999999999999999999999997 99999994 78899999999999654332233421 1111389999
Q ss_pred cc---CCCeeeecC--------------ChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 132 HD---VPNIVYRTD--------------NEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 132 ~~---~p~~~~R~~--------------~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
.+ ..+|.+... ... ++....|++....++++ +. +-|..+||
T Consensus 95 ~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 95 WEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 73 226643211 122 66667778888777774 21 67877776
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.22 E-value=0.0005 Score=73.85 Aligned_cols=157 Identities=17% Similarity=0.300 Sum_probs=109.3
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEc--eeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 42 LFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTY--VFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 42 ~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~y--v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688889888765432 3445555689999886 4499999999999999 89999999999999975332 11
Q ss_pred cccCCCCCCceeccCCCeeeecC-ChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchh---------h
Q 006326 120 SEWTYGGFPFWLHDVPNIVYRTD-NEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEK---------A 189 (650)
Q Consensus 120 aE~~~gg~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 189 (650)
|.. ..|.|+...+.. ... .+..++.+++++++++.+++. -|.|.+|-|=||-=.... .
T Consensus 82 --W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp --ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred --Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 544 789999874110 000 123788899999999988863 178999999999643210 1
Q ss_pred cCCCcHHHHHHHHHHHHhcCCccceEEecc
Q 006326 190 FGEAGPSYVRWAAKMAVELETGVPWVMCKQ 219 (650)
Q Consensus 190 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 219 (650)
+...+.+|+...-+.+++...++.+|.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 112246789988899988888888998864
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.0027 Score=67.13 Aligned_cols=133 Identities=19% Similarity=0.331 Sum_probs=98.7
Q ss_pred HHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCC
Q 006326 64 AKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDN 143 (650)
Q Consensus 64 ~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~ 143 (650)
.|+.+.=|=+.-.=|+..||++|.|+|+ --|+..+.|+++||.+- -=+.| |-+ -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 3444333334445599999999999999 67999999999999643 22222 443 6888987632 334
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc----chh---hcCCCcHHHHHHHHHHHHhcCCccceEE
Q 006326 144 EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN----IEK---AFGEAGPSYVRWAAKMAVELETGVPWVM 216 (650)
Q Consensus 144 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 216 (650)
++.++.+++++..++.+++ |-|+.|-|=||-=. ... ..+....+|+++.-+.+++.+.+-.++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999997 35999999999643 111 1224678999999999999888888888
Q ss_pred ecc
Q 006326 217 CKQ 219 (650)
Q Consensus 217 ~~~ 219 (650)
++=
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 764
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.08 E-value=0.00054 Score=77.10 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..|++||+.||++|+|+.++-+.|+-.+|. +|++|-.|....+++|+.+.++||..++-. ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 459999999999999999999999999999 699999998899999999999999977664 2345899998
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
+.-+- .++...+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74332 2456667777777788888774
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.00 E-value=0.0064 Score=59.35 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeCCccC-----CC---CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 50 PRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-----PQ---PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hE-----p~---~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
..+.++.|+.+++.||++|+|||=+- |...+ |. ++.|.-.....|+.+|++|++.||+|.+..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 56899999999999999999998542 32222 11 22233334458999999999999999998631
Q ss_pred cCCCCCCceeccCCCeeeecCChhH-HHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCcHHHHHH
Q 006326 122 WTYGGFPFWLHDVPNIVYRTDNEPF-KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRW 200 (650)
Q Consensus 122 ~~~gg~P~WL~~~p~~~~R~~~~~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 200 (650)
-|.|-.+ .|+.. .+..++.+++|..++ ++....=+|=|-.|..... ....++.+-
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~y-------g~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRY-------GHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHH-------cCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 2333331 22222 122233444444444 4455788888888887532 234566666
Q ss_pred HHHHHHhcCCccceE
Q 006326 201 AAKMAVELETGVPWV 215 (650)
Q Consensus 201 l~~~~~~~g~~vp~~ 215 (650)
|.+.+++.--+.|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 666666543344544
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.82 E-value=0.0045 Score=66.77 Aligned_cols=104 Identities=22% Similarity=0.414 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCC
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQP-GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPN 136 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~-G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~ 136 (650)
+|.|+-+|+.|+|+||+=| | +.|.. |..|.+ +..+..+.|+++||+|+|..- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999988 4 44555 665666 666777777899999999873 31 1122 222
Q ss_pred eee-----ec-CChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006326 137 IVY-----RT-DNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (650)
Q Consensus 137 ~~~-----R~-~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 185 (650)
-.. +. +-..-.+++..|.+.++..|+. +|-.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 211 11 2245678899999999999985 4557789999999764
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.67 E-value=0.0019 Score=73.12 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..|++|++.||++|+|+-++-+.|+-..|. +|+++=.|....+++|+.+.++||..++-.= -=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--------H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--------HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 458999999999999999999999999997 5678888888999999999999999887742 224899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
+. -+- .|+...++-.+|.+.+++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 63 442 2455556666666667666664
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.65 E-value=0.0017 Score=73.28 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..|+++++.||++|+|+.++-+.|.-.+|. +++++=+|....+++|+.+.++||..++..= -=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--------H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC--------HFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 447999999999999999999999999997 5567777888999999999999999877642 234899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
.. -+- .++...++..+|.+.+++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fgd 170 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFDG 170 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhcC
Confidence 53 332 2344445555555555555553
No 33
>PLN02998 beta-glucosidase
Probab=96.56 E-value=0.0021 Score=72.97 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|++|++.||++|+|+-|+-|.|+-.+|. .|++|=+|....+++|+.+.|+||..++-.=- | .+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-----~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-----F---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-----C---CCCHHHHH
Confidence 458999999999999999999999999996 57788889999999999999999986665422 3 37999986
Q ss_pred -CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 134 -VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 134 -~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+-+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 35432222224455555555555555544
No 34
>PLN02814 beta-glucosidase
Probab=96.54 E-value=0.0022 Score=73.07 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|++|++.||++|+|+-|+-+.|+-.+|. +|++|-+|....+++|+.+.|+||..++-.=- |+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-----~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-----YD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-----CC---CCHHHHH
Confidence 458999999999999999999999999996 67888899999999999999999997666422 43 7999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 134 V-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 134 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
. -+-.=|..-..|.++++..++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4432222223344444444444444443
No 35
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.49 E-value=0.0031 Score=71.41 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..|++|++.||++|+|+-|+-+.|+-.+|. +|+++=.|....+++|+.+.++||..++-.=- | .+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-----~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-----F---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-----c---CCCHHHH
Confidence 458999999999999999999999999997 66778888889999999999999986665411 3 3899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+. -+-.=|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4432222223455555555555555544
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.0088 Score=66.43 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=71.8
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEcee-CCccCCC----CceeeeccchhHHHHHHHHHHcCCEEEEecCccccccc
Q 006326 53 TPQMW-----PSLIAKAKEGGLHVIQTYVF-WNLHEPQ----PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEW 122 (650)
Q Consensus 53 ~~~~W-----~~~l~k~k~~G~NtV~~yv~-W~~hEp~----~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~ 122 (650)
...-| ++.+..||.+|||+||+++. |.+ ++. |...+-+-...|++.|+.|++.||+|+|-.-=|-+ -
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--G 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--C
Confidence 34557 89999999999999999999 664 554 33321221227899999999999999998421110 0
Q ss_pred CCCCCCceecc-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006326 123 TYGGFPFWLHD-VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (650)
Q Consensus 123 ~~gg~P~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 185 (650)
..+--..|... .+. ..+..++..+..+.|+.+++ +.-.||++|+=||--.
T Consensus 143 ~~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKE------ENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccc------cchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 00111223222 111 22233444444445555554 4568999999999864
No 37
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.43 E-value=0.0031 Score=71.35 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..|++|++.||++|+|+-|+-|.|+-.+|. +|+++=.|....+++|+.+.++||..++-.=- | -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-----~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-----F---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCCHHHH
Confidence 458999999999999999999999999997 56678888889999999999999986666422 3 3899997
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 133 D-VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 133 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+ +-+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 6 34432222223455555544444444443
No 38
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.41 E-value=0.0033 Score=71.03 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|++|++.||++|+|+-|+-+.|+-.+|. .|.+|-.|....+++|+.+.++||.-++-.=- | .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-----F---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCcHHHHH
Confidence 458999999999999999999999999996 57788889999999999999999986666421 3 38999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
.-+- .++...+...+|.+.++++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 234444444445455555443
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.33 E-value=0.0057 Score=69.10 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|++|++.||++|+|+-|+-+.|+-.+|. +|++|=+|....+++|+.+.++||..++-.=- | -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-----F---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-----C---CCcHHHHH
Confidence 458999999999999999999999999996 57778788889999999999999997777532 3 38999976
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
.-+- .++...++-.+|.+.++++++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234444555555555555554
No 40
>PLN02849 beta-glucosidase
Probab=96.30 E-value=0.004 Score=70.86 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..|++|++.||++|+|+-|+-+.|+-.+|. .|++|=.|....+++|+.+.++||.-++-.=- | -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-----Y---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-----C---CCcHHHHH
Confidence 458999999999999999999999999996 37788888889999999999999996666422 3 38999976
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 134 V-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 134 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
. -+-.=|..-..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222224455555555555555544
No 41
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.72 E-value=0.063 Score=50.47 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCEEEEcee----C-----CccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 006326 59 SLIAKAKEGGLHVIQTYVF----W-----NLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPF 129 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~yv~----W-----~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~ 129 (650)
+-++.+|++|.|+|.++.= | .+|.+.|+- ..+ -|.++++.|++.||.|++|...- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~D---llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRD---LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcC---HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467899999999999531 2 234445544 222 67999999999999999997654 33333445799
Q ss_pred eeccCCCe-------------eeecCChhHHHHHHHHHHHHHHHH
Q 006326 130 WLHDVPNI-------------VYRTDNEPFKFYMQNFTTKIVNLM 161 (650)
Q Consensus 130 WL~~~p~~-------------~~R~~~~~y~~~~~~~~~~l~~~l 161 (650)
|+..+++= ..-+.|.+|++.+.+-+++++.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 99864431 122345678887777777776654
No 42
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.019 Score=63.96 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCce--eeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE--YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~--~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..+++|++.||+||+|+.|+-|.|+-.-|..+. .+=.|....+++++.|.++||.-++-.=- |+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-----fd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-----FD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-----cC---CcHHHh
Confidence 458999999999999999999999999996654 77788889999999999999997776532 33 799998
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+. -+=.=|. -.++-.+|.+.++++++
T Consensus 131 ~~ygGW~nR~----~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRE----TVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCccCHH----HHHHHHHHHHHHHHHhc
Confidence 75 3432232 23444445555555554
No 43
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.10 E-value=0.073 Score=62.12 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCceEEEEEeecCCC--CCCCCeEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCC-cEEEEEEecC
Q 006326 436 KSDYLWYTFSFQTNS--SCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGM-NNISILSVMA 509 (650)
Q Consensus 436 ~~GyllY~t~i~~~~--~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~ 509 (650)
..|..|||++|..+. .+....|.+.++.-.|.|||||++||...+-. ..+.+++.-.++.|. |+|.|.|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEecC
Confidence 568899999996422 13456799999999999999999999876533 335555554466675 4999999874
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.87 E-value=0.099 Score=64.66 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=62.8
Q ss_pred ceEEEEEeecCCC--CCCCCeEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEEEEecCCCcCcc
Q 006326 438 DYLWYTFSFQTNS--SCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSG 515 (650)
Q Consensus 438 GyllY~t~i~~~~--~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG 515 (650)
|--|||++|..+. .+....|.+.++.-.+.|||||++||.-.+.. ..+.+++.-.++.|.|+|.|.|.+...-.|
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d~s~- 185 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWADSTY- 185 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCCCCc-
Confidence 5679999996322 12456799999999999999999999866433 345565554467788999999975432222
Q ss_pred ccccc----cccceeE-EEEccc
Q 006326 516 AFLEK----RFAGLAT-VEIHCG 533 (650)
Q Consensus 516 ~~~~~----~~KGI~g-V~L~g~ 533 (650)
+++ ..-||.. |.|...
T Consensus 186 --le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 186 --LEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --cccCCccccccccceEEEEEe
Confidence 221 2368888 887544
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=0.21 Score=52.50 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCceecc
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ---AQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~---~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
=+|.|+-+|+.|+|.|++-| |+----..|.=-=.|+.|+.+.+++|+ ..||+|++.. -|. .| =.=|+-- +
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF-HYS--Df--waDPakQ-~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF-HYS--DF--WADPAKQ-K 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec-cch--hh--ccChhhc-C
Confidence 47899999999999999866 444322333333346789999997764 6899999986 121 11 0001100 0
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 185 (650)
.|.--.-.+-..-.+++-.|.+..+..++++ |=-+=||||.||-.+
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 1211111222445677888899988888854 445679999999864
No 46
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.54 Score=53.29 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=96.9
Q ss_pred CCeEEECCeEeEEEEEEecCCC-----CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHH
Q 006326 30 GRSLIIDGQRKILFSGSIHYPR-----STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ 104 (650)
Q Consensus 30 ~~~~~i~g~~~~~~sg~~hy~r-----~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~ 104 (650)
+..|.|++.|.++.++...+.. ..-+.-+-.|+.++++|+|++++ |. - |...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----G------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----G------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----C------ccccchhHHHHhh
Confidence 3567899999999999876543 34445566899999999999998 32 1 2334689999999
Q ss_pred HcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccc-
Q 006326 105 AQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEY- 183 (650)
Q Consensus 105 ~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy- 183 (650)
+.||.|--.. =+.||-. -.|..|+..|+.=++.=+.+|+.|| .||.+-=.||=
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999775332 1244433 2467899988887777777777654 68877655552
Q ss_pred -ccchhhcCC-------CcHHH----HHHHHHHHHhcCCccceEEecc
Q 006326 184 -QNIEKAFGE-------AGPSY----VRWAAKMAVELETGVPWVMCKQ 219 (650)
Q Consensus 184 -g~~~~~~~~-------~~~~y----~~~l~~~~~~~g~~vp~~~~~~ 219 (650)
.-.+..|+. .-++| .+-++++.....-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111112221 12233 3334455544455678888754
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.05 E-value=0.32 Score=52.21 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=72.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCC-------ccCCC-------Cce-eeeccchhHHHHHHHHHHcCCEEEEecCcc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWN-------LHEPQ-------PGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPF 117 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~-------~hEp~-------~G~-~df~g~~dl~~fl~~a~~~Gl~vilr~GPy 117 (650)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 566678899999999999997665432 12221 121 0144 79999999999999999776 11
Q ss_pred cccccCC----CCCCceec-cCCCeeeec----CChhH----HHHHHHHHHHHHHHHHhcCcccccCCceEEeccc
Q 006326 118 IESEWTY----GGFPFWLH-DVPNIVYRT----DNEPF----KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE 180 (650)
Q Consensus 118 i~aE~~~----gg~P~WL~-~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 180 (650)
-....+. -..|.|+. +.|+..... .+..| ..+|++|+..++..|.+ .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 1100011 12588876 466643333 12222 35777777777776654 23 46677876
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.95 E-value=0.21 Score=61.87 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=61.8
Q ss_pred CceEEEEEeecCCCC--CC-CCeEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEEEEecCCCcC
Q 006326 437 SDYLWYTFSFQTNSS--CT-EPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPD 513 (650)
Q Consensus 437 ~GyllY~t~i~~~~~--~~-~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~N 513 (650)
.|-.|||++|..+.. .. ...|.+.++.-.+.|||||++||.-.+.. ..+.+++.-.++.|+|+|.|.|..--.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~sd-- 194 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWSD-- 194 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecCC--
Confidence 367899999964221 12 46799999999999999999999865432 345566554467788999999953211
Q ss_pred ccccccc----cccceeE-EEEccc
Q 006326 514 SGAFLEK----RFAGLAT-VEIHCG 533 (650)
Q Consensus 514 yG~~~~~----~~KGI~g-V~L~g~ 533 (650)
|..+++ ...||.. |.|.-.
T Consensus 195 -gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 195 -GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred -CCccccCCceeeccccceEEEEEc
Confidence 222221 2358888 887443
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.67 E-value=2.2 Score=50.17 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHHHHcCCCEEEE-ceeCCccC----CCCc-----eeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 62 AKAKEGGLHVIQT-YVFWNLHE----PQPG-----EYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 62 ~k~k~~G~NtV~~-yv~W~~hE----p~~G-----~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
..+|++|+|+|.+ +|+..-.. -.+- .-.|.+..+|.+|++.|+++||.|||..=
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 6779999999999 67653211 1110 11355667999999999999999999853
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=92.44 E-value=0.33 Score=47.27 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCc-------cCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNL-------HEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~-------hEp~~G~~-----df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
+.+.|..+|++|+|+|.+-=.+.. |.-.+..| .|....++.++++.|+++||+||+..=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 455667799999999998532211 11222222 456678999999999999999999875544444
No 51
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=92.32 E-value=0.22 Score=47.67 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=35.5
Q ss_pred CCceEEEEEEeCCCCC--CCeEEeeCCCc-eEEEEECCeeeeecc
Q 006326 584 QPLTWYKTAFDAPVGD--DPVALNLSSMG-KGEAWVNGLSVGRYW 625 (650)
Q Consensus 584 ~~p~fYk~tF~l~~~~--d~t~Ld~~g~g-KG~vwVNG~nlGRYW 625 (650)
.+..|||.+|++|... ..++|.+.+.. ...|||||+.+|+-.
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC
Confidence 5689999999999643 35899998764 999999999999865
No 52
>PRK09936 hypothetical protein; Provisional
Probab=92.29 E-value=0.26 Score=51.97 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccc-hhHHHHHHHHHHcCCEEEEe
Q 006326 51 RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR-YDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 51 r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~-~dl~~fl~~a~~~Gl~vilr 113 (650)
+++++.|+.+++.+++.|++|+-+ -|...--. ||.+. .+|.+.++.|++.||.|++.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV--QWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE--EeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 579999999999999999999754 46544111 88765 48999999999999999987
No 53
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.28 E-value=0.11 Score=57.75 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=108.1
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcc-CC---CCceeee-ccchhHHHHHHHHHHc
Q 006326 32 SLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLH-EP---QPGEYDF-GGRYDLVKFIKEIQAQ 106 (650)
Q Consensus 32 ~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~ 106 (650)
.|.++++++..++..-.+.++-.++=+++|+-|+.+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37888888888877766777766667889999999999999996 344 55 3343322 2345789999999999
Q ss_pred CCEEEEecCcccccccCCCCCC---ceec-cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc
Q 006326 107 GLYACLTIGPFIESEWTYGGFP---FWLH-DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE 182 (650)
Q Consensus 107 Gl~vilr~GPyi~aE~~~gg~P---~WL~-~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 182 (650)
+|+|+++. |.+==.+||.= .|-- +.|+-.+ .|+.++..-++|+..+++-++. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99999884 44433456642 2432 2344211 2566666677788888776554 458999999999
Q ss_pred cccchhhcCCCcHHHHHHHHHHHH
Q 006326 183 YQNIEKAFGEAGPSYVRWAAKMAV 206 (650)
Q Consensus 183 yg~~~~~~~~~~~~y~~~l~~~~~ 206 (650)
--+. -...+..+++|+++|+.
T Consensus 148 ~lv~---~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 PLVE---APISVNNFWDWSGEMYA 168 (587)
T ss_pred cccc---ccCChhHHHHHHHHHHH
Confidence 2221 12357899999999984
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.05 E-value=3.6 Score=42.94 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=74.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceec
Q 006326 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 54 ~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~aE~~~gg~P~WL~ 132 (650)
...|++.|+.++++|++.|++.+ +.. +..+...+++. ..+..+.+.++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCCH-HHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 35599999999999999999943 222 22234445552 368899999999999975 444310 1111
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCC-------cHHHHHHHHHHH
Q 006326 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEA-------GPSYVRWAAKMA 205 (650)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 205 (650)
+-..|+.-+++..+.+++.++..+. + |.++|.+- ..++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 2223556666666677777776663 2 45666442 11110 1111 124555666667
Q ss_pred HhcCCcc
Q 006326 206 VELETGV 212 (650)
Q Consensus 206 ~~~g~~v 212 (650)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7667654
No 55
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.75 E-value=1.5 Score=48.83 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=80.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEce-------------eCCccCCCCceee-eccchhHHHHHHHHHHcCCEEEEecCccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYV-------------FWNLHEPQPGEYD-FGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv-------------~W~~hEp~~G~~d-f~g~~dl~~fl~~a~~~Gl~vilr~GPyi 118 (650)
.++.-.+.|.+++++|+|||-.-| +|..-. ||.+- =.|..-|...|++|++.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566678999999999999986533 233322 44331 12333688889999999999999988877
Q ss_pred ccccCCCC---CCceecc-CCCeeeecCC--------hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006326 119 ESEWTYGG---FPFWLHD-VPNIVYRTDN--------EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (650)
Q Consensus 119 ~aE~~~gg---~P~WL~~-~p~~~~R~~~--------~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 184 (650)
.|--..-. -|.|+.. .|+......+ .++.-+++.|+..+...+.. .+ .|-++|.+--++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 65422222 4778876 4664433322 13456788888776555554 24 577889876655
No 56
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=89.34 E-value=6.6 Score=47.11 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------CCccCC---CCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTY-VF-------WNLHEP---QPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~y-v~-------W~~hEp---~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
+.|++.|..+|++|+|+|++- |+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||..=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 447889999999999999983 42 332210 01 113555679999999999999999998533
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.21 E-value=4.2 Score=48.73 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEE-cee-CCc---cCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 006326 61 IAKAKEGGLHVIQT-YVF-WNL---HEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 61 l~k~k~~G~NtV~~-yv~-W~~---hEp~~G~~-----df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
|.-+|++|+|+|.. +|+ ... |-..+..| .|.+..+|.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999998 464 111 11111111 25566799999999999999999985
No 58
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=89.14 E-value=0.6 Score=53.03 Aligned_cols=61 Identities=11% Similarity=0.271 Sum_probs=43.9
Q ss_pred cccHH---HHHHHHHHcCCCEEEE-ceeCCc-----cCCCCcee--------------eeccchhHHHHHHHHHHcCCEE
Q 006326 54 PQMWP---SLIAKAKEGGLHVIQT-YVFWNL-----HEPQPGEY--------------DFGGRYDLVKFIKEIQAQGLYA 110 (650)
Q Consensus 54 ~~~W~---~~l~k~k~~G~NtV~~-yv~W~~-----hEp~~G~~--------------df~g~~dl~~fl~~a~~~Gl~v 110 (650)
.+.|+ +.|.-+|++|+++|-+ +++-+. |--.+--| .|....||.++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35576 5577789999999988 465432 33222222 2445679999999999999999
Q ss_pred EEec
Q 006326 111 CLTI 114 (650)
Q Consensus 111 ilr~ 114 (650)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9986
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.07 E-value=5.1 Score=47.33 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEE-cee-------CCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 61 IAKAKEGGLHVIQT-YVF-------WNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 61 l~k~k~~G~NtV~~-yv~-------W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.-+|++|+|+|+. +|. |...--. .=.=.|....+|..|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999997 342 3221000 000123455799999999999999999885
No 60
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.69 E-value=6.5 Score=47.00 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCccCCCCcee----eeccchhHHHHHHHHHHcCCEEEEecCccccc
Q 006326 60 LIAKAKEGGLHVIQT-YVF-------WNLHEPQPGEY----DFGGRYDLVKFIKEIQAQGLYACLTIGPFIES 120 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~-yv~-------W~~hEp~~G~~----df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~a 120 (650)
.|.-+|++|+|+|+. +|+ |.+.- -|-| .|....++..|++.|+++||.|||..=|-=|+
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 467789999999998 453 32210 0111 35566799999999999999999986443333
No 61
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=87.67 E-value=1.4 Score=50.10 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=43.7
Q ss_pred EEEecCCCCCcccHHHHHHHHH-HcCCCEEEEc-ee---CCcc-C-CCCc--eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 44 SGSIHYPRSTPQMWPSLIAKAK-EGGLHVIQTY-VF---WNLH-E-PQPG--EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 44 sg~~hy~r~~~~~W~~~l~k~k-~~G~NtV~~y-v~---W~~h-E-p~~G--~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
-|.-|....-++.|+..|+.++ ++||..|++- +| .... | ..+| .|||+ .||.++|...+.||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 4555555667788999888886 8999999872 22 1111 1 1233 39999 99999999999999977776
Q ss_pred C
Q 006326 115 G 115 (650)
Q Consensus 115 G 115 (650)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.99 E-value=10 Score=48.01 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCccC--CCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 60 LIAKAKEGGLHVIQT-YVF-------WNLHE--PQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~-yv~-------W~~hE--p~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.|.-+|++|+|+|+. +|+ |.+.- ...=.=.|.+..||..|++.|+++||.|||.-
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999998 453 32210 00001135566799999999999999999984
No 63
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=86.86 E-value=6.8 Score=42.63 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCC
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ---AQGLYACLTIGPFIESEWTYGGFP 128 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~---~~Gl~vilr~GPyi~aE~~~gg~P 128 (650)
..++..+.-++.+|+.|++.-..|-.|. +|.+-|++-++..- +.+|...|+ +.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 3677788899999999999999998884 44556766665553 456666666 22222311
Q ss_pred ceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCcHHHHHHHHHHHHhc
Q 006326 129 FWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVEL 208 (650)
Q Consensus 129 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 208 (650)
.|=....++.+-...+. .+..++.++.|++.+++..+.--+|-||+++=--.+. .+-+++++.+++.++++
T Consensus 117 ~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 13222233322211110 1224567778888888755555588899987322111 25678999999999999
Q ss_pred CCccceEEec
Q 006326 209 ETGVPWVMCK 218 (650)
Q Consensus 209 g~~vp~~~~~ 218 (650)
|+.-+.+...
T Consensus 188 G~~giyii~~ 197 (345)
T PF14307_consen 188 GLPGIYIIAV 197 (345)
T ss_pred CCCceEEEEE
Confidence 9986655443
No 64
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.11 E-value=0.81 Score=47.35 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCc----cCCCCcee-e----eccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNL----HEPQPGEY-D----FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~----hEp~~G~~-d----f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+.|+.+|++|+|+|.+-=.+.. |--.+-.| + |.+..+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688899999999999533322 11111122 1 3355799999999999999999986
No 65
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.47 E-value=1.3 Score=48.65 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=49.7
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCccccccc
Q 006326 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEW 122 (650)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~ 122 (650)
+|=++++...+.+..+..|++|+++|+..|=| ++|.|++..=+.- ..+..+++.|++.||.|++...|=+....
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l~~l 75 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVLKKL 75 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHHHTT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHHHHc
Confidence 56678888888888999999999999977766 7888885432221 26899999999999999999987665443
No 66
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.12 E-value=10 Score=39.40 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL-TIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil-r~GPyi~aE~~~gg~P~WL~~ 133 (650)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.+.++++||.|.. .++-+ + .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---CcC-----
Confidence 35999999999999999999632 2221 11122333 23689999999999998753 32211 0 011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccc--hhhcCCCcHHHHHHHHHHHHhcCCc
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNI--EKAFGEAGPSYVRWAAKMAVELETG 211 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~ 211 (650)
+.+.|+..++...+.++++++..+. + |.++|.+.--..+... ...+. .-.+.++.+.+++++.|+.
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETRQ-RFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHHH-HHHHHHHHHHHHHHHhCCE
Confidence 2345666666666666666665553 2 4455543210000000 00000 1235677777778777775
Q ss_pred c
Q 006326 212 V 212 (650)
Q Consensus 212 v 212 (650)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 67
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=84.07 E-value=3.5 Score=44.45 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=87.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCceeeec--cchhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTY-------VFWNLHEPQPGEYDFG--GRYDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~y-------v~W~~hEp~~G~~df~--g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~ 123 (650)
.++.-++.|+.+|+.|+|+|-+= |.+..-.|..-+..-. ...|+.++++.++|+|||+|.|.=-+---..
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 34567889999999999998763 3454433332222111 1369999999999999999999732210000
Q ss_pred CCCCCceecc-CCCeeeecCC-----hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccc------------cccc
Q 006326 124 YGGFPFWLHD-VPNIVYRTDN-----EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIEN------------EYQN 185 (650)
Q Consensus 124 ~gg~P~WL~~-~p~~~~R~~~-----~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN------------Eyg~ 185 (650)
..--|.|-.+ .-+-..|..+ -+|.+++.+|.-.|++.+++..+ =-+|.++ .|+.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GF--------dEIqfDYIRFP~~~~~~~l~y~~ 161 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGF--------DEIQFDYIRFPDEGRLSGLDYSE 161 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCC--------CEEEeeeeecCCCCcccccccCC
Confidence 0113555542 1121123221 36789999999999999886422 2234432 1111
Q ss_pred chhhcC----CCcHHHHHHHHHHHHhcCCcc
Q 006326 186 IEKAFG----EAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 186 ~~~~~~----~~~~~y~~~l~~~~~~~g~~v 212 (650)
. .+. ..=.+|++.+++.++..|..|
T Consensus 162 ~--~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 162 N--DTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred C--CCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 0 000 123478888888888776543
No 68
>PRK12313 glycogen branching enzyme; Provisional
Probab=82.68 E-value=2.4 Score=49.95 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=38.4
Q ss_pred HHHHHHcCCCEEEE-cee-CC---ccCCCCc-----eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 61 IAKAKEGGLHVIQT-YVF-WN---LHEPQPG-----EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 61 l~k~k~~G~NtV~~-yv~-W~---~hEp~~G-----~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
|..+|++|+|+|.. +|+ .. .|--.+. .-.|.+..+|.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999997 453 11 0111111 1135567899999999999999999985
No 69
>PRK10785 maltodextrin glucosidase; Provisional
Probab=80.78 E-value=3.1 Score=48.75 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEE-ceeCC--ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQT-YVFWN--LHEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~-yv~W~--~hEp~~G~~-----df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+.|.-+|++|+|+|-+ +||=+ .|---...| .|.+..+|.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788899999999998 56632 222112211 14566899999999999999999975
No 70
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.69 E-value=3.2 Score=40.37 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeee
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYR 140 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R 140 (650)
|+.++++|+..|+............ ...++.+.++++++||.+..--.+.. +. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc----------ccccccc
Confidence 6789999999999965532222211 23799999999999999664322111 00 0111123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccc--cccccc--hhhcCCCcHHHHHHHHHHHHhcCCcc
Q 006326 141 TDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE--NEYQNI--EKAFGEAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 141 ~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~v 212 (650)
+.+++ ++...+.+.+.++..+. + |.+.|.+..- +..... ...+. .-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENWE-RLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHHH-HHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHHH-HHHHHHHHHHhhhhhhcceE
Confidence 44444 77777777777777764 2 5667777643 111110 00111 23456677777777777653
No 71
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=80.41 E-value=3.3 Score=48.03 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCC-Cceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 006326 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEPQ-PGEYD----------FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~-yv~W~~hEp~-~G~~d----------f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.++|..+|++|+++|-+ +++-+ |. ..-|| |....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457889999999999988 45522 11 11232 4456799999999999999999885
No 72
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=80.15 E-value=17 Score=37.80 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHc-CCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQ-GLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~-Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
.-|++.|+.+|++|++.|++-+........ ......+++.+.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 669999999999999999997643211111 111345899999999999 7665554 2331
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccc
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE 180 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 180 (650)
..+...++.-++...+.+++.++..+. + |-+.|.+...
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCC
Confidence 012233444455555555555555543 2 3455655554
No 73
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.26 E-value=3.6 Score=47.66 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 59 SLIAKAKEGGLHVIQT-YVF-------WNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~-yv~-------W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.|..+|++|+|+|.+ +|+ |.+.-.. .=.=.|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999998 453 3221100 000125566799999999999999999985
No 74
>PLN02960 alpha-amylase
Probab=79.10 E-value=4 Score=49.42 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 59 SLIAKAKEGGLHVIQT-YVF-------WNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~-yv~-------W~~hEp~--~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.|.-+|++|+|+|+. .|+ |.+.-.. .=.-.|....+|.+|++.|+++||.|||..
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999999998 454 3321100 001124456799999999999999999985
No 75
>PRK01060 endonuclease IV; Provisional
Probab=78.53 E-value=11 Score=39.21 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEE---EEecCcccccccCCCCCCceecc
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA---CLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~v---ilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
+++.+++++++|++.|++.+. +-+.-..+.++-. ++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~---~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL---NIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH---HHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999643 1122122222222 6888999999999973 32 23431
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEec
Q 006326 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQ 178 (650)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 178 (650)
+.+-+.|+..+++..+.+++.++.-++ + |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~~--l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCAA--L----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 123345677888777777777776553 3 44555554
No 76
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=78.47 E-value=3.6 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEE-cee-------CCccCCCCcee------eeccchhHHHHHHHHHHcCCEEEEe
Q 006326 57 WPSLIAKAKEGGLHVIQT-YVF-------WNLHEPQPGEY------DFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~-yv~-------W~~hEp~~G~~------df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
=.+.|.-+|+||+++|+. +|. |.+- |.. .|..-.||.+|||.|+++||-|||.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 356788999999999998 332 2221 111 1334479999999999999999998
No 77
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=78.20 E-value=13 Score=41.20 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCee--ee-cC--ChhHHHHHHHHHHHH
Q 006326 83 PQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIV--YR-TD--NEPFKFYMQNFTTKI 157 (650)
Q Consensus 83 p~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~--~R-~~--~~~y~~~~~~~~~~l 157 (650)
+..|.|||+....-..||+.|++.|...++..- --+|.||++.-... -+ .+ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999998776777899999999999887752 34899998732210 00 11 245667777888888
Q ss_pred HHHHHhcCcccccCCceEEeccccccccc-------hhhcC-CCcHHHHHHHHHHHHhcCCccceEEecc
Q 006326 158 VNLMKSSGLYASQGGPIILSQIENEYQNI-------EKAFG-EAGPSYVRWAAKMAVELETGVPWVMCKQ 219 (650)
Q Consensus 158 ~~~l~~~~~~~~~gGpII~~QiENEyg~~-------~~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 219 (650)
+++++.+ |=+|=-+=.=||.... .|.+. ....+.++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 8888543 3244444445886531 01111 1346788899999999999887766654
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=78.17 E-value=3.3 Score=48.55 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------CCccC-----CCCceee----ec--cchhHHHHHHHHHHcCCEEE
Q 006326 59 SLIAKAKEGGLHVIQT-YVF---------------WNLHE-----PQPGEYD----FG--GRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~-yv~---------------W~~hE-----p~~G~~d----f~--g~~dl~~fl~~a~~~Gl~vi 111 (650)
+.|.-+|++|+|+|.+ +|+ |.+.- |. +.|- |. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999998 454 32221 00 1110 11 12689999999999999999
Q ss_pred Eec
Q 006326 112 LTI 114 (650)
Q Consensus 112 lr~ 114 (650)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 985
No 79
>PRK09505 malS alpha-amylase; Reviewed
Probab=77.96 E-value=4.6 Score=48.05 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCC-----------------CCc-----eeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEP-----------------QPG-----EYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~-yv~W~~hEp-----------------~~G-----~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
+.+.|.-+|++|+|+|-+ .++=+.|.. -+- .-.|....+|..+++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456788899999999987 455443321 111 112556679999999999999999998
Q ss_pred cC
Q 006326 114 IG 115 (650)
Q Consensus 114 ~G 115 (650)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 80
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.45 E-value=34 Score=37.88 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc----eeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCcccccccCCCCC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTY----VFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL-TIGPFIESEWTYGGF 127 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~y----v~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil-r~GPyi~aE~~~gg~ 127 (650)
++....+++++++++|+..|+.. ++|..-..+. ..++.++-++++++||.|.. .++-+. -
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~--------~ 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFS--------H 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccC--------C
Confidence 33456789999999999999863 1121111000 12578889999999999764 332110 1
Q ss_pred CceeccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 128 PFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 128 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
|.|.. + -+-+.|+..+++.-+.+++.++.-+
T Consensus 95 ~~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11211 1 1344577777666666665555444
No 81
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.44 E-value=3.8 Score=35.39 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=35.5
Q ss_pred CCeEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeeccc-CCCCcEEEEEEecCCCc
Q 006326 454 EPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGL-NDGMNNISILSVMAGLP 512 (650)
Q Consensus 454 ~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILvEn~Gr~ 512 (650)
...|++.+-....+-||||+++|+..... .+.+. + ..|.++|++ ++..|+.
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~~----~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFWQ----PDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEeC----CCCCeeEEEEE-EcCCCCE
Confidence 34566655466999999999998866432 22332 3 668899988 8888875
No 82
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=77.29 E-value=5 Score=46.38 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHcCCCEEEEc-eeCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 006326 56 MWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPGEYD----------FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~~G~~d----------f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
-+.+.|.-+|++|+|+|-+- +|=+- .....|| |.+..++.++++.|+++||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~--~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSP--LRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCC--CCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36778999999999999883 54110 0011222 4456799999999999999999964
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.87 E-value=25 Score=36.60 Aligned_cols=125 Identities=14% Similarity=0.240 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceeccC
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWLHDV 134 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~aE~~~gg~P~WL~~~ 134 (650)
.|++.++.++++|+..|+..+. ..++ ....++++ ...++.+.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4999999999999999999532 1111 01122333 2368899999999999875 332211 0011
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCC-------CcHHHHHHHHHHHHh
Q 006326 135 PNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGE-------AGPSYVRWAAKMAVE 207 (650)
Q Consensus 135 p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 207 (650)
+-+.++.-++...+.+++.++..+. + |.++|-+. |... .++. .-.+.++.|.+.+++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLA-----GYDV-YYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEC-----Cccc-cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555666666677777776663 2 55666542 1100 0111 113456677777777
Q ss_pred cCCcc
Q 006326 208 LETGV 212 (650)
Q Consensus 208 ~g~~v 212 (650)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 84
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=75.67 E-value=5.8 Score=45.91 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEecC
Q 006326 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEPQPGEYD----------FGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~-yv~W~~hEp~~G~~d----------f~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
+.+.|..+|++|+|+|-+ +++=+-.. ...|+ |.+..+|.++++.|+++||+|||-.=
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 567888999999999988 35532111 11232 44567999999999999999999853
No 85
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=74.69 E-value=13 Score=42.55 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=87.1
Q ss_pred EEEEEEec------CCCCCcccHHHHHHHH---HHcCCCEEEEcee---CCccCC----CCceee---ecc-chh---HH
Q 006326 41 ILFSGSIH------YPRSTPQMWPSLIAKA---KEGGLHVIQTYVF---WNLHEP----QPGEYD---FGG-RYD---LV 97 (650)
Q Consensus 41 ~~~sg~~h------y~r~~~~~W~~~l~k~---k~~G~NtV~~yv~---W~~hEp----~~G~~d---f~g-~~d---l~ 97 (650)
.=+||++= ..+.+++.=++.|+.+ +-+|++.+|+.+- .+.++- .|+.|+ |+= ..| +-
T Consensus 77 ~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~i 156 (496)
T PF02055_consen 77 DGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKI 156 (496)
T ss_dssp -EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHH
T ss_pred EEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHH
Confidence 33566652 2234444333334333 5689999999873 222221 233222 221 112 23
Q ss_pred HHHHHHHHc--CCEEEEecCcccccccCCCCCCceeccCCCe----eee-cCChhHHHHHHHHHHHHHHHHHhcCccccc
Q 006326 98 KFIKEIQAQ--GLYACLTIGPFIESEWTYGGFPFWLHDVPNI----VYR-TDNEPFKFYMQNFTTKIVNLMKSSGLYASQ 170 (650)
Q Consensus 98 ~fl~~a~~~--Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~----~~R-~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~ 170 (650)
.+|+.|++. +|+++.-| |. .|+||+....+ .++ ...+.|.+...+|+.+.++.++++
T Consensus 157 p~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~------ 220 (496)
T PF02055_consen 157 PLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE------ 220 (496)
T ss_dssp HHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC------
Confidence 577777653 58888876 65 89999874333 244 234678888888888888888853
Q ss_pred CCceEEeccccccccch---hhcC------CCcHHHHH-HHHHHHHhcCC--ccceEEecc
Q 006326 171 GGPIILSQIENEYQNIE---KAFG------EAGPSYVR-WAAKMAVELET--GVPWVMCKQ 219 (650)
Q Consensus 171 gGpII~~QiENEyg~~~---~~~~------~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~ 219 (650)
|=+|=++-+.||..... ..|. +..++|+. .|.-.+++.|+ ++-+++.|.
T Consensus 221 GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDH 281 (496)
T ss_dssp T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEE
T ss_pred CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 45999999999987421 0111 12355664 47778888876 788777653
No 86
>PLN02361 alpha-amylase
Probab=74.35 E-value=6.9 Score=43.64 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEEc-ee--CCccCCCCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 006326 59 SLIAKAKEGGLHVIQTY-VF--WNLHEPQPGE-YD----FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~y-v~--W~~hEp~~G~-~d----f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.|..++++|+++|-+. ++ ...|--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 56777899999999885 33 2223222322 22 4556799999999999999999875
No 87
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.30 E-value=11 Score=47.89 Aligned_cols=121 Identities=14% Similarity=0.224 Sum_probs=74.6
Q ss_pred CeEEECCeEeEEEEE---EecCCCC--CcccHHHHHHHHHHcCCCEEEE-cee-CCccC-C--CCceee----e----cc
Q 006326 31 RSLIIDGQRKILFSG---SIHYPRS--TPQMWPSLIAKAKEGGLHVIQT-YVF-WNLHE-P--QPGEYD----F----GG 92 (650)
Q Consensus 31 ~~~~i~g~~~~~~sg---~~hy~r~--~~~~W~~~l~k~k~~G~NtV~~-yv~-W~~hE-p--~~G~~d----f----~g 92 (650)
-.+.|+|++++.+.+ .-..+++ +=+.|++.|+.+|++|.|+|.. +++ =.... | ....+. | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 456666633333222 2334554 4477999999999999999987 354 21110 0 011111 3 35
Q ss_pred chhHHHHHHHHHHc-CCEEEEecCcccccccCCCC-CCceeccCCCeeeecCChhHHHHHHHHHHHH
Q 006326 93 RYDLVKFIKEIQAQ-GLYACLTIGPFIESEWTYGG-FPFWLHDVPNIVYRTDNEPFKFYMQNFTTKI 157 (650)
Q Consensus 93 ~~dl~~fl~~a~~~-Gl~vilr~GPyi~aE~~~gg-~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 157 (650)
..|+.++++.|++. ||++|+.. + |+-=+ -=.||.++|+.-.-..+.+|++.+-..-++|
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~eLD~aL 243 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRPAIVLDRLN 243 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhhHHHHHHHH
Confidence 67899999999986 99999884 1 22211 2359998998766677777776654443333
No 88
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=73.86 E-value=7.2 Score=41.52 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=48.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCC-Cceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
..+..++.++++|+.|+.+=.+.+-...+... -+.|.|+-. -|..++++.+++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 55667899999999997765555443333322 135665532 28999999999999999999888775
No 89
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=73.79 E-value=11 Score=39.89 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=71.1
Q ss_pred EEEEEEecCCCCCcc-cHH---HHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 41 ILFSGSIHYPRSTPQ-MWP---SLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 41 ~~~sg~~hy~r~~~~-~W~---~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
+-+++..||+..|.. ..+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888898875432 222 2444434699998888544 4555 7899999999997764444444
Q ss_pred ccc---------cccCCCCCCceeccC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 117 FIE---------SEWTYGGFPFWLHDV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 117 yi~---------aE~~~gg~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
..+ +||..--+|.|+.+. .. ...+++..++..-++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~--~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLEP--IKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 577766789999762 11 1233455566777788888888874
No 90
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=72.80 E-value=5.4 Score=41.42 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 54 ~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
+...++-|+.+|++||++|++ ..|..+.+- .+..++|+.|+++|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~~-~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLPE-EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS---H-HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCCH-HHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999998 557666652 3788999999999999999987
No 91
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=71.92 E-value=14 Score=41.09 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
..+.|+++++.+|++|++...+=+- ....+.-+ -|...++.|++.|+++.|.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 6788999999999999998877443 11122222 68889999999999999997
No 92
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=71.85 E-value=7.2 Score=44.55 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCC---ceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQP---GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~---G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
.++++++.||++|++.-|.-|.|+-.=|.- +.-+=.|..-...+|+...++||...+-.= =|+ +|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----HwD---lPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HWD---LPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cCC---CCHHHH
Confidence 489999999999999999999999987752 456777888888999999999999665531 243 899998
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEec
Q 006326 133 D-VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQ 178 (650)
Q Consensus 133 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 178 (650)
+ +-+-+-+..=..|+++++--|+++..+++- ...-|.+.|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~--WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVKH--WITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhccccee--eEEecccceeeee
Confidence 7 555433333456777777777777777762 3223555555443
No 93
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=70.97 E-value=1.6 Score=50.66 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=26.1
Q ss_pred cccccccCCCCcCcCCCCCChhHHHHHH
Q 006326 273 YIITSYYDQAPLDEYGLTRQPKWGHLKE 300 (650)
Q Consensus 273 ~~~TSYDYdApl~E~G~~~tpKy~~lr~ 300 (650)
...|||||+||+.|+|+++++||.++|.
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~ 351 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLRE 351 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhh
Confidence 5889999999999999988999999994
No 94
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=69.49 E-value=17 Score=29.19 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 006326 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 54 ~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788999999999999999742 333 58877765 4788999999999998764
No 95
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=69.39 E-value=7.2 Score=49.50 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEE-ceeCCccCCC---Cc-----eee----------ec--cchhHHHHHHHHHHcCCEEEEec
Q 006326 59 SLIAKAKEGGLHVIQT-YVFWNLHEPQ---PG-----EYD----------FG--GRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~-yv~W~~hEp~---~G-----~~d----------f~--g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.|.-+|++|+|+|.. +|+=+..|.. .| -|| |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999998 5663222221 01 022 33 56789999999999999999984
No 96
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=68.72 E-value=32 Score=38.21 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=61.1
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 48 HYPRSTPQMWPSLIAKAKEGGLHVIQTY-------VFWNLHEPQPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 48 hy~r~~~~~W~~~l~k~k~~G~NtV~~y-------v~W~~hEp~~G~~df~-g~~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
.+.+..++.| .+.+|++|+..|-.- -.|.-....-..-+-. ++.-+.++.+.|+++||++-+=-.+
T Consensus 77 ~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 3444566666 568899999966442 1255433221111111 2234567889999999987764332
Q ss_pred cccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 120 SEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 120 aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
-+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+.+
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~ 191 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR 191 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc
Confidence 36653 444322111113345677888888888888777763
No 97
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=68.64 E-value=26 Score=41.87 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCC---CCc-----eee----------e---ccchhHHHHHHHHHHcCCEEEEec
Q 006326 60 LIAKAKEGGLHVIQT-YVFWNLHEP---QPG-----EYD----------F---GGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~-yv~W~~hEp---~~G-----~~d----------f---~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.|.-+|++|+|+|.+ +||=...++ ..| -|| | ....+|.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999998 465111111 111 111 2 124689999999999999999985
No 98
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.36 E-value=38 Score=36.16 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=52.0
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEceeCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 50 PRSTPQMWPSLIAKAKEGGLH--VIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~G~N--tV~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
.....+.-++.++++++.|+. +|.+=..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 345667789999999999965 554444452 34566666532 3899999999999999999999999864
No 99
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=67.90 E-value=77 Score=32.65 Aligned_cols=130 Identities=13% Similarity=0.106 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCC
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVP 135 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p 135 (650)
-+++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|..- +|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~-~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGY-TPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEe-cCc------ccCcCcccc---
Confidence 48999999999999999983210 011011 222 236888999999999997532 221 123333221
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc-cc-cchhhcCCCcHHHHHHHHHHHHhcCCcc
Q 006326 136 NIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE-YQ-NIEKAFGEAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 136 ~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 212 (650)
..++.-+++..+.+++.++.-+. + |.+.|.+-.-.. +. .....+. .-.+.++.|.+.+++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~~--l----Ga~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAKE--M----NAGYTLISAAHAGYLTPPNVIWG-RLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEcCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEE
Confidence 12344455555555555554442 2 445554422111 00 0000011 22346777777777777653
No 100
>PRK09989 hypothetical protein; Provisional
Probab=67.71 E-value=57 Score=33.51 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
.+++|++++++|++.|++..+| ++ +.+.+.++++++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~----------~~----~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPY----------DY----STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCcc----------cC----CHHHHHHHHHHcCCcEEE
Confidence 7889999999999999994332 12 367788889999999775
No 101
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=67.50 E-value=11 Score=45.56 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-eeCC----ccCCCCc-----eeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTY-VFWN----LHEPQPG-----EYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~y-v~W~----~hEp~~G-----~~df~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
+.+.+.|.-++++|+++|.+- ++=+ .|--..- .-.|.+..++.+|++.|+++||.|||..=|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 448889999999999999773 4311 1111100 112557889999999999999999998744
No 102
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.10 E-value=1e+02 Score=36.01 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCcee--------eeccc----hhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPGEY--------DFGGR----YDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~~G~~--------df~g~----~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
+.=++.|++|+...+|.|+.| ..|-.|.|-|+.= |+.++ .-+...|+.|++.|++++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 345778999999999999999 8899999977543 22332 3678999999999999885433232222
Q ss_pred c--CCCCCCceecc
Q 006326 122 W--TYGGFPFWLHD 133 (650)
Q Consensus 122 ~--~~gg~P~WL~~ 133 (650)
. ..|-.|.|-.-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888863
No 103
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=67.04 E-value=11 Score=30.95 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=20.8
Q ss_pred CcceEEEEEECCeEEEEEEcccCc
Q 006326 461 SLAHVAHAFVNNIYAGAAHGNHDV 484 (650)
Q Consensus 461 ~~~D~a~Vfvng~~vG~~~~~~~~ 484 (650)
...|.|-||++++++|+++++...
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 568899999999999999987544
No 104
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=66.75 E-value=95 Score=31.98 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCC
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVP 135 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~-~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p 135 (650)
-.+.++++.++|++.|+.. ..+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3578999999999999994 33332210 0222 126889999999999986653 3441
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006326 136 NIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (650)
Q Consensus 136 ~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 179 (650)
+.+.+.|+..+++..+++.+.++..+. + |.++|.+..
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h~ 105 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFHP 105 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEcc
Confidence 124456777787777777777776553 3 455555543
No 105
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=63.60 E-value=14 Score=48.16 Aligned_cols=60 Identities=25% Similarity=0.429 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCc---eee----------eccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPG---EYD----------FGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~~G---~~d----------f~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
+-+.|.+.|.-+|++|+|+|-+- +| +..+| -|| |.+..++.++++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34568999999999999999884 43 22222 122 557789999999999999999998744
No 106
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=63.50 E-value=15 Score=44.79 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCc---ee---e-------eccchhHHHHHHHHHHcCCEEEEecCccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPG---EY---D-------FGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~~G---~~---d-------f~g~~dl~~fl~~a~~~Gl~vilr~GPyi 118 (650)
+.+.+.|.-++++|+|+|-+- ++ +..+| -| | |.+..++.+|++.|+++||.|||..=|-=
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 458899999999999999883 43 11122 11 2 44778999999999999999999975543
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.38 E-value=15 Score=37.98 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
...++-++.+|++||++|++ ..|..+++ ..+..++|+.++++||+|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56677888999999999998 56777776 337889999999999999988763
No 108
>PLN00196 alpha-amylase; Provisional
Probab=62.32 E-value=18 Score=40.80 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCC--ccCCCCce-ee-----eccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTY-VFWN--LHEPQPGE-YD-----FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~y-v~W~--~hEp~~G~-~d-----f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+.|..+|++|+++|-+. ++=+ .|--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999885 4422 12222322 22 4445799999999999999999986
No 109
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=62.11 E-value=7.7 Score=31.77 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred eEeecCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEEEEecCCCcCc
Q 006326 456 VLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDS 514 (650)
Q Consensus 456 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~Ny 514 (650)
.|.|...=..|.|||||+++|... +.+. .++.|.++ |-++.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~--v~v~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHT--VTVEKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEE--EEEEECCCeeE
Confidence 344554444689999999999432 2222 14456544 44555565554
No 110
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=61.56 E-value=16 Score=39.20 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=49.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCc--eeeeccch--hHHHHHHHHHHcCCEEEEecCcccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPG--EYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G--~~df~g~~--dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
..+.-++.++++++.|+-+=.+.+-|.... ..+ .|+|+-.+ |..++++.+++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 445568899999999988766655555443 234 77776443 8999999999999999998777763
No 111
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=61.32 E-value=14 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 006326 94 YDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 94 ~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 112
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.68 E-value=3.7 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
-...+++.++|-+.|.+.++|....+..-.+... ++.++.+.|++.||+||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568899999999999999997776665555555 8999999999999999999
No 113
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=58.62 E-value=32 Score=40.92 Aligned_cols=110 Identities=11% Similarity=0.020 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEce---------------eCCccCCCCceeeeccchhHHH-HHHHHHHcCCEEEEecCccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYV---------------FWNLHEPQPGEYDFGGRYDLVK-FIKEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv---------------~W~~hEp~~G~~df~g~~dl~~-fl~~a~~~Gl~vilr~GPyi 118 (650)
+.-...|+++|++|+|||-.-+ +| -| -||+-|. +++ ...++.+.|++|..+-+||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~--lp~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RL--LPMRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cc--cccccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 3467789999999999996554 45 22 2333331 112 33458899999999999996
Q ss_pred cc---------ccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccc
Q 006326 119 ES---------EWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEY 183 (650)
Q Consensus 119 ~a---------E~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 183 (650)
.. +++..+-|+-.. |+-..| =.+|..++++|+..|.+-|+.+ .+|=++|.+-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 111111111110 000011 1356788999999999988863 245566665554
No 114
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=20 Score=38.88 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=57.3
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~-~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
+|=++++.|.+.+.=..-|++|...||..|=| ++|.|++.. --|. -+..+++.|++.|++||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56678888888877788899999999977655 677777542 1234 688999999999999999998877555
Q ss_pred c
Q 006326 122 W 122 (650)
Q Consensus 122 ~ 122 (650)
.
T Consensus 77 l 77 (360)
T COG3589 77 L 77 (360)
T ss_pred c
Confidence 3
No 115
>PRK03705 glycogen debranching enzyme; Provisional
Probab=57.27 E-value=18 Score=43.07 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC---c-----eee----------ecc-----chhHHHHHHHHHHcCCEEEEec
Q 006326 60 LIAKAKEGGLHVIQT-YVFWNLHEPQP---G-----EYD----------FGG-----RYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~-yv~W~~hEp~~---G-----~~d----------f~g-----~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999998 46521111110 1 011 222 1479999999999999999985
No 116
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.71 E-value=37 Score=35.40 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCcee--eeccc--hhHHHHHHHHHHcCCEEEEecCccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEY--DFGGR--YDLVKFIKEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~--df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi 118 (650)
..+..++.++++++.|+-.=.+.+-+..++. -+.| +|+-. -|..++++.+++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999987666666555443 3566 44321 3899999999999999999988877
No 117
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=56.65 E-value=24 Score=37.73 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=40.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee---CCccCCCCc--------eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF---WNLHEPQPG--------EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~---W~~hEp~~G--------~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+..-.++++.+|..|+|++-+=+= =++.=|... +=.|- |+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 3445678999999999999866331 011111111 11244 99999999999999999996
No 118
>PRK12677 xylose isomerase; Provisional
Probab=56.52 E-value=1e+02 Score=34.30 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcee
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG---GRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWL 131 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~---g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~aE~~~gg~P~WL 131 (650)
.+.+.+++++++|+..|+.- .+..--|+.+ -...++++.+++++.||.|. +.|.-+....+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999872 1111112221 11248899999999999977 44421111111111
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
-+-+.|+..++.+.+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445577777776666666655544
No 119
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.00 E-value=22 Score=38.69 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=55.1
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccch--hH--HHHHHHHHHcCCEEEEecCcccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRY--DL--VKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~--dl--~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
+|..|. ..+.-++.++++++.|+.+=.+.+-+..+.. .+.|+|+..+ |. .++++.+++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 4566789999999999987666654444433 4677766532 77 99999999999999999989987
Q ss_pred cc
Q 006326 120 SE 121 (650)
Q Consensus 120 aE 121 (650)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 120
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.56 E-value=26 Score=37.68 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-----CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-----QPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp-----~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
..+..++.++++++.|+-+=.+.+-+..+.. .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 3455788999999999886666554333331 2356766533 28999999999999999999877764
No 121
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=55.23 E-value=21 Score=43.92 Aligned_cols=21 Identities=10% Similarity=0.419 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 006326 94 YDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 94 ~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999975
No 122
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=53.27 E-value=1e+02 Score=34.36 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=57.3
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCC----ceeeeccc---hhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP----GEYDFGGR---YDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~----G~~df~g~---~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
-+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+--+-. .-|..+.+.+++.||+.=|+..|-++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456677778888899999999999877755576542221 32221111 13999999999999999988888765
Q ss_pred cccC--CCCCCceeccCCC
Q 006326 120 SEWT--YGGFPFWLHDVPN 136 (650)
Q Consensus 120 aE~~--~gg~P~WL~~~p~ 136 (650)
++=. +-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 3221 2247999987554
No 123
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=53.08 E-value=68 Score=30.90 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHcCCCEEEEcee--CCccCC----CCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCC
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVF--WNLHEP----QPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFP 128 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~--W~~hEp----~~G~~df~g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~aE~~~gg~P 128 (650)
.-++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|.
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~------------ 94 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR------------ 94 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT------------
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc------------
Confidence 4567778889999997665443 444211 1111 11123478999999999999855 44431
Q ss_pred ceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccc
Q 006326 129 FWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNI 186 (650)
Q Consensus 129 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 186 (650)
|-.. .......-++.+.+.+++++++.+++. |.+-+||..+..
T Consensus 95 -~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 -YPSG-----PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp -ESSS-----TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred -cccc-----cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 0000 011223456777778888888887532 346688888753
No 124
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=52.46 E-value=27 Score=37.84 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=52.8
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccch--hHHHHHHHHHHcCCEEEEecCccccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIES 120 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~--dl~~fl~~a~~~Gl~vilr~GPyi~a 120 (650)
+|..|. ..+.-++.++++++.|+.+=.+.+-+... ...+.|+|+-.+ |..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 344443 34556788999999999876665543322 345667776432 88999999999999999999888864
No 125
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=52.40 E-value=58 Score=34.20 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=70.0
Q ss_pred eEEEEEEecCCCCCccc-H---HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCE--EEEe
Q 006326 40 KILFSGSIHYPRSTPQM-W---PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY--ACLT 113 (650)
Q Consensus 40 ~~~~sg~~hy~r~~~~~-W---~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~--vilr 113 (650)
.+-+++..||.+.|... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46789999888754432 1 24566667899998888433 5555 789999999999765 4444
Q ss_pred cCcccc-------cccCCCCCCceeccC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 114 IGPFIE-------SEWTYGGFPFWLHDV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 114 ~GPyi~-------aE~~~gg~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
.-|-.. .+|..-.+|.|+.+. .. ...+....+++.-++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 235556688888751 11 1122245666777777777777764
No 126
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=52.20 E-value=37 Score=40.08 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=52.2
Q ss_pred HHHHHHcCCCEEEEc-ee-----CC--ccCCCCceee---------eccchhHHHHHHHHHHcCCEEEEec--------C
Q 006326 61 IAKAKEGGLHVIQTY-VF-----WN--LHEPQPGEYD---------FGGRYDLVKFIKEIQAQGLYACLTI--------G 115 (650)
Q Consensus 61 l~k~k~~G~NtV~~y-v~-----W~--~hEp~~G~~d---------f~g~~dl~~fl~~a~~~Gl~vilr~--------G 115 (650)
++.++++|+++|-+- ++ |. ..--..|-|| |....|++++++.|+++||+||+.. -
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 357889999999873 32 33 2222356676 3345799999999999999999765 3
Q ss_pred cccccccCCCCCCcee
Q 006326 116 PFIESEWTYGGFPFWL 131 (650)
Q Consensus 116 Pyi~aE~~~gg~P~WL 131 (650)
|+.-||.+.+-+|.|.
T Consensus 160 dF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 160 DFRLAELAHGDYPGLY 175 (688)
T ss_pred chHHHhhcCCCCCCce
Confidence 4778888888888887
No 127
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=51.32 E-value=30 Score=35.36 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
-+++.+++++++|++.|+....+ + .++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----------~----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----------D----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----------c----CCHHHHHHHHHHcCCeEEE
Confidence 38899999999999999984321 1 2588899999999999764
No 128
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.27 E-value=60 Score=34.21 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=60.4
Q ss_pred eEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec--cchhHHHHHHH
Q 006326 25 NVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG--GRYDLVKFIKE 102 (650)
Q Consensus 25 ~v~~~~~~~~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~--g~~dl~~fl~~ 102 (650)
.|... .+.+.+.+++++.|=+=.. .++.-.+.-+++|++|+..++.|.|= |+=--+.|. |...+..+-+.
T Consensus 15 ~~~~~--~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~~~ 86 (266)
T PRK13398 15 IVKVG--DVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILKEV 86 (266)
T ss_pred EEEEC--CEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHHHH
Confidence 44443 3677777899998843221 46667788899999999999999774 332234666 56789999999
Q ss_pred HHHcCCEEEEec
Q 006326 103 IQAQGLYACLTI 114 (650)
Q Consensus 103 a~~~Gl~vilr~ 114 (650)
|++.||.++-.|
T Consensus 87 ~~~~Gl~~~te~ 98 (266)
T PRK13398 87 GDKYNLPVVTEV 98 (266)
T ss_pred HHHcCCCEEEee
Confidence 999999988775
No 129
>PLN02877 alpha-amylase/limit dextrinase
Probab=50.98 E-value=28 Score=42.96 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 006326 94 YDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 94 ~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++.++++.|+++||.|||.-
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999985
No 130
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.86 E-value=38 Score=36.39 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC---CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP---QPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp---~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
+.-++.++++++.++-+=.+.+-+....- ....|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 34578899999999987666554333221 1234555432 38999999999999999999888875
No 131
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=49.88 E-value=38 Score=38.07 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=62.6
Q ss_pred cCCCC--CcccHHHHHHHHHHcCCCEEEEc-eeCCccCCC----Cceeeec-----cc-----hhHHHHHHHH-HHcCCE
Q 006326 48 HYPRS--TPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQ----PGEYDFG-----GR-----YDLVKFIKEI-QAQGLY 109 (650)
Q Consensus 48 hy~r~--~~~~W~~~l~k~k~~G~NtV~~y-v~W~~hEp~----~G~~df~-----g~-----~dl~~fl~~a-~~~Gl~ 109 (650)
+.+++ +-+.|++.|+.++++|+|+|..- +---..... ..+..|+ .. .++.++++.+ ++.||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 44689999999999999999762 211000000 0111111 11 4899999888 479998
Q ss_pred EEEecCcccccccCCC-CCCceeccCCCeeeecCChhHHHHHHHHHHHH
Q 006326 110 ACLTIGPFIESEWTYG-GFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKI 157 (650)
Q Consensus 110 vilr~GPyi~aE~~~g-g~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 157 (650)
++... + |+.- -==.||..+|+.-.-..+.++++.+-..-++|
T Consensus 93 ~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL 135 (423)
T PF14701_consen 93 SMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRAL 135 (423)
T ss_pred EEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHH
Confidence 76553 1 2221 12469999999766666777776554433333
No 132
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=49.39 E-value=32 Score=36.95 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=51.7
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
+|..|. ..+.-++.++++++.++-.=.+.+-+.... .-+.|+|+.. -|..++++.+++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344454 445678999999999998666555433332 3466776543 38999999999999999999877774
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=49.16 E-value=73 Score=32.83 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=55.6
Q ss_pred CCceeeec-cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 84 QPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 84 ~~G~~df~-g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
..|...+. +..++..+++.|++.|++|++..|= |..+.+- .+ ..++.- -+++++.|++.++
T Consensus 35 ~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~-~~---------~~~~~~---r~~fi~~lv~~~~ 96 (253)
T cd06545 35 ANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFT-AA---------LNDPAK---RKALVDKIINYVV 96 (253)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcch-hh---------hcCHHH---HHHHHHHHHHHHH
Confidence 35666664 3347889999999999999999761 2211110 01 123332 3467888888888
Q ss_pred hcCcccccCCceEEeccccccccchhhcCCCcHHHHHHHHHHHHhcC
Q 006326 163 SSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELE 209 (650)
Q Consensus 163 ~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 209 (650)
++.+ =++.|+=|+.... ...-.++++.|++.+.+.|
T Consensus 97 ~~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 97 SYNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred HhCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 6543 2456666765321 1112345566666665544
No 134
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=49.13 E-value=29 Score=29.85 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=26.3
Q ss_pred cCCceEEeccccc-cccchhhcC-----CCcHHHHHHHHHHH---HhcCCccceEEe
Q 006326 170 QGGPIILSQIENE-YQNIEKAFG-----EAGPSYVRWAAKMA---VELETGVPWVMC 217 (650)
Q Consensus 170 ~gGpII~~QiENE-yg~~~~~~~-----~~~~~y~~~l~~~~---~~~g~~vp~~~~ 217 (650)
....|.+|+|-|| -++....+. .....|.+||++++ |+.+...|+..+
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 4468999999999 552211111 12456777777666 556777887643
No 135
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=48.37 E-value=33 Score=38.47 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCEEEE-ceeC---CccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 006326 59 SLIAKAKEGGLHVIQT-YVFW---NLHEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~-yv~W---~~hEp~~G~~-----df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.|.-+|++|+++|-+ +++= ..|.-..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999966 3431 2222111111 47788899999999999999999874
No 136
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=47.83 E-value=53 Score=35.82 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=57.1
Q ss_pred eEEECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecc--chhHHHHHHHHHHcCC
Q 006326 32 SLIIDGQRKILFSGSIHYPRS-TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGG--RYDLVKFIKEIQAQGL 108 (650)
Q Consensus 32 ~~~i~g~~~~~~sg~~hy~r~-~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g--~~dl~~fl~~a~~~Gl 108 (650)
.+.|.|.++.++.| |--+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36677788888888 2233 55666778888899999999999883 5544577775 4567777778899999
Q ss_pred EEEEec
Q 006326 109 YACLTI 114 (650)
Q Consensus 109 ~vilr~ 114 (650)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988875
No 137
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=47.46 E-value=2.1e+02 Score=30.93 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 59 SLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 59 ~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
..+...++.|.+||--.- -+-=| ||..+..+.+++.||.+|..+|+|.-+.|+ .|+..
T Consensus 52 ~e~~~~~a~Gg~TIVD~T-----~~~~G-------Rdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~ 109 (316)
T COG1735 52 AELKRLMARGGQTIVDAT-----NIGIG-------RDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFAL 109 (316)
T ss_pred HHHHHHHHcCCCeEeeCC-----ccccC-------cCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhh
Confidence 356667778999987621 11112 489999999999999999999999987775 56654
No 138
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=46.88 E-value=1.4e+02 Score=32.41 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=55.6
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccch--hHHHHHHHHHHcCCEEEEecCcccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~--dl~~fl~~a~~~Gl~vilr~GPyi~ 119 (650)
+|..|+ ..+..++.++++++.++-.=.+++-|..+. .-+.|.|+..+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 556678999999999998766666665554 34677776433 7899999999999999999889987
No 139
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=46.31 E-value=73 Score=31.03 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=32.0
Q ss_pred CeEeecCcceEEEEEECCeEEEEEEc-----ccCc--ceeEEEeecccCCCCcEEEEEEecCCCc
Q 006326 455 PVLHVESLAHVAHAFVNNIYAGAAHG-----NHDV--KKFTMDIPIGLNDGMNNISILSVMAGLP 512 (650)
Q Consensus 455 ~~L~i~~~~D~a~Vfvng~~vG~~~~-----~~~~--~~~~~~~~~~l~~g~~~L~ILvEn~Gr~ 512 (650)
..|.|.... +..+||||+.||.-.- +... .-.++++.--|+.|.|.|.|++-+....
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~ 69 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYN 69 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S-
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccc
Confidence 456666544 6789999999997441 1111 1123444434888999999999765443
No 140
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=45.93 E-value=33 Score=36.10 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=41.4
Q ss_pred CccchhhhhcCC---CCCCceEEEEEeecCCC-----CCCCCeEeecCcceEEEEEECCeEEEE
Q 006326 422 KADTLLEHMNTT---KDKSDYLWYTFSFQTNS-----SCTEPVLHVESLAHVAHAFVNNIYAGA 477 (650)
Q Consensus 422 ~~p~~~Eql~~t---~d~~GyllY~t~i~~~~-----~~~~~~L~i~~~~D~a~Vfvng~~vG~ 477 (650)
..|.++-.++|. .|.+|-+||+.++.-.+ .++...|++.++|-.|.|+|||.-+=.
T Consensus 69 pvpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~ 132 (297)
T KOG2024|consen 69 PVPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALE 132 (297)
T ss_pred ccccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecc
Confidence 345556777665 46899999999885322 135678999999999999999876533
No 141
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=44.69 E-value=44 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=51.6
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIES 120 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~a 120 (650)
+|..|. ..+..++.++++++.|+-+=.+.+-+.... .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 445578899999999998655554433332 3455666533 278999999999999999988888753
No 142
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.37 E-value=55 Score=34.71 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccC--------CCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHE--------PQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPF 117 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hE--------p~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPy 117 (650)
+.+.-++.++++++.|+-+=.+.+-...|. ..-+.|+|+-. -|..++++.+++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 445568899999999998766665433332 12356777643 389999999999999999887554
No 143
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=44.25 E-value=35 Score=40.75 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC--------------------ceeeecc-----chhHHHHHHHHHHcCCEEEEe
Q 006326 60 LIAKAKEGGLHVIQT-YVFWNLHEPQP--------------------GEYDFGG-----RYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~-yv~W~~hEp~~--------------------G~~df~g-----~~dl~~fl~~a~~~Gl~vilr 113 (650)
.|.-+|++|+++|+. +|+.-..|+.. |.|--++ .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 489999999999998 68866666543 2333233 257888999999999999998
Q ss_pred c
Q 006326 114 I 114 (650)
Q Consensus 114 ~ 114 (650)
-
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 144
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=43.84 E-value=9.9 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.544 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQ 106 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~ 106 (650)
....|..-+|.+.. .||.|..|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 44568888887654 47999999999 999999999873
No 145
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.57 E-value=38 Score=35.52 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEceeCC--ccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWN--LHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~--~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
++.+++||++|++.|...+--+ .++.--+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 6789999999999998865411 111111223454 6667789999999986543
No 146
>PLN03059 beta-galactosidase; Provisional
Probab=41.50 E-value=44 Score=40.64 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=30.9
Q ss_pred eEEEEEeecCCCCCCCCeEeecCcceEEEEEECCeEEEEEE
Q 006326 439 YLWYTFSFQTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAH 479 (650)
Q Consensus 439 yllY~t~i~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~ 479 (650)
..||+++|+.+.+..+..|.+.+.. ...|||||+-+|...
T Consensus 620 ~twYK~~Fd~p~g~Dpv~LDm~gmG-KG~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGNDPLALDMSSMG-KGQIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCCCCEEEecccCC-CeeEEECCccccccc
Confidence 8999999986543334678877766 458999999999865
No 147
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=40.07 E-value=95 Score=36.64 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 36 DGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 36 ~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
++++-+.+++..|+.+...+.=-++|.+-.++|.+.+-|-.++ |.+ .+.+|++.+++.++.+|...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEee
Confidence 3345578999999887655544456777778999999996653 334 788999999888888888877
Q ss_pred ccccc--------ccCCCCCCceeccC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 116 PFIES--------EWTYGGFPFWLHDV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 116 Pyi~a--------E~~~gg~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
|-... +|..-=+|.|+.+. .. .. +...++++..++..++++.+.
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 65433 24444478888761 11 11 224667777778888888776
No 148
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.72 E-value=1.1e+02 Score=33.58 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccC----------------------------CCCceeeeccchhHHHHH
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHE----------------------------PQPGEYDFGGRYDLVKFI 100 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hE----------------------------p~~G~~df~g~~dl~~fl 100 (650)
+.+..++.++.|...++|+....+. |.+-- +..|.|.-+ |+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~---di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQE---EIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHH---HHHHHH
Confidence 5788899999999999999998762 42211 113445444 999999
Q ss_pred HHHHHcCCEEEEec
Q 006326 101 KEIQAQGLYACLTI 114 (650)
Q Consensus 101 ~~a~~~Gl~vilr~ 114 (650)
+.|+++|+.||-.+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999765
No 149
>PLN02784 alpha-amylase
Probab=39.27 E-value=65 Score=39.41 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCc---cCCCCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNL---HEPQPGE-YD----FGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~---hEp~~G~-~d----f~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+.+..++++|+++|-+.=.-.- |--.+.. |+ |....+|..+++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35678889999999998532111 1111111 12 3445799999999999999999985
No 150
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=39.15 E-value=25 Score=33.08 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCCEEEEecCcccccccC-CCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 95 DLVKFIKEIQAQGLYACLTIGPFIESEWT-YGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 95 dl~~fl~~a~~~Gl~vilr~GPyi~aE~~-~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
||..||+.|++.|+.|++-.-| +++.|- +-|+| ++.-++++++|-.++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998877655 666663 12222 23445677777777764
No 151
>PRK14566 triosephosphate isomerase; Provisional
Probab=38.73 E-value=86 Score=33.01 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=47.0
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 35 i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
++|.++.+.+=.+|+.-.-+-.=+--.+++|++|++.|-+ -|..++..|. +.+..+.+=++.|.++||.+|+|.
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3454555544445543321111112346799999999988 5655554442 223456667889999999999998
Q ss_pred C
Q 006326 115 G 115 (650)
Q Consensus 115 G 115 (650)
|
T Consensus 136 G 136 (260)
T PRK14566 136 G 136 (260)
T ss_pred C
Confidence 7
No 152
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=38.28 E-value=62 Score=33.61 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 36 DGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 36 ~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
++.++.+-+=.+|+...-.-.=+--.+++|++|++.|-+ -|..++--|.= ...++.+=++.|.++||.+|+|.|
T Consensus 52 ~~~~i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 52 EGSKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVII-----GHSERRQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCCeEEEecccccccCCCCcCcCCHHHHHHcCCCEEEe-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 333444444445654321111122346799999999998 56555544433 345788889999999999999987
No 153
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.85 E-value=63 Score=36.07 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~ 123 (650)
..+...+.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|...+++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 355678899999999998777665533333 4455555533 279999999999999999998888765443
No 154
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.83 E-value=64 Score=34.42 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccC----------------CCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHE----------------PQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hE----------------p~~G~~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
+.+..++.++.|...++|++..++- |.+-- +..|.|.-+ ++..+++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 6677899999999999999999976 75431 122345555 999999999999999996
Q ss_pred ec
Q 006326 113 TI 114 (650)
Q Consensus 113 r~ 114 (650)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 64
No 155
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.67 E-value=85 Score=33.50 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCCC----CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEPQ----PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hEp~----~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.+.-++.++.|...|+|++..|+- +.-+ |+ +|.|.-+ ++.++++.|++.||.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT~~---ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYTKE---EIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcCHH---HHHHHHHHHHHcCCEEEecC
Confidence 3466789999999999999999852 3222 22 3444444 99999999999999999664
No 156
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=37.63 E-value=66 Score=32.58 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
..++|++|++.|-+ -|..++ |.-+ |+.+=++.|.++||.+|+|.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 46799999999988 565555 5444 68899999999999999997
No 157
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.58 E-value=72 Score=34.73 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=49.3
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEce----------eCCccCCC---------Cceeeeccc---hhHHHHHH
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYV----------FWNLHEPQ---------PGEYDFGGR---YDLVKFIK 101 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv----------~W~~hEp~---------~G~~df~g~---~dl~~fl~ 101 (650)
+|..|. ..+.-++.++++++.|+.+=.+.+ .|+-..-. -+.++|... -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455554 345568899999999998666544 24432211 133334311 27999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 006326 102 EIQAQGLYACLTIGPFIE 119 (650)
Q Consensus 102 ~a~~~Gl~vilr~GPyi~ 119 (650)
.+++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888875
No 158
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=37.58 E-value=89 Score=30.88 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=54.7
Q ss_pred EEEecCCCCC-----cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceee--ecc-chhHHHHHHHHHHcCCEEEEecC
Q 006326 44 SGSIHYPRST-----PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYD--FGG-RYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 44 sg~~hy~r~~-----~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~d--f~g-~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|++.++++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3889998643 456777888888765532 111333443333322 111 13688999999999999999988
Q ss_pred cccccc----c---CCCCCCceeccC
Q 006326 116 PFIESE----W---TYGGFPFWLHDV 134 (650)
Q Consensus 116 Pyi~aE----~---~~gg~P~WL~~~ 134 (650)
++-... . .....|-|+..+
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 762211 1 145689999874
No 159
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.11 E-value=94 Score=24.93 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
..++.++++|+.|++.|.+= -|. ++. ...++.+.+++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 36789999999999999872 121 233 4678889999999988754
No 160
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=36.38 E-value=67 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vil 112 (650)
++++|++++++|++.|++.. |. + .+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~----~----~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY----D----YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC----C----CCHHHHHHHHHHcCCcEEE
Confidence 78899999999999999831 11 1 2699999999999999864
No 161
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.21 E-value=13 Score=36.79 Aligned_cols=67 Identities=25% Similarity=0.413 Sum_probs=45.7
Q ss_pred EeEEEEEEecCCCC---CcccHHHHHHHHHHcCCCEEE--EceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 39 RKILFSGSIHYPRS---TPQMWPSLIAKAKEGGLHVIQ--TYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 39 ~~~~~sg~~hy~r~---~~~~W~~~l~k~k~~G~NtV~--~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
...+-+|--.|.|+ .|-.-+ +-+.++|++.+- |.| ---.--|||....+|..|.++|+++||.+-|.
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred ceEEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 34456676677775 333333 346778888654 422 12234689988889999999999999998776
No 162
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=35.45 E-value=71 Score=34.13 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCE--EEEecCccc-------ccccCCCCCCce
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY--ACLTIGPFI-------ESEWTYGGFPFW 130 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~--vilr~GPyi-------~aE~~~gg~P~W 130 (650)
.|++-.++|-+.+-|-.| ||.+ .+.+|++.|++.|+. |+...-|-. .++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455556789988877443 5666 899999999999954 555555532 156677789999
Q ss_pred eccC-CCeeeecCC-hhHHHHHHHHHHHHHHHHHh
Q 006326 131 LHDV-PNIVYRTDN-EPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 131 L~~~-p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 163 (650)
+.+. .. . .++ ...+++--++..++++.|.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9762 11 1 233 34566677788888888764
No 163
>PLN03036 glutamine synthetase; Provisional
Probab=35.08 E-value=1e+02 Score=34.80 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecc----------chhHHHHH--HHHHHcCCEEEEecCccccccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGG----------RYDLVKFI--KEIQAQGLYACLTIGPFIESEW 122 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g----------~~dl~~fl--~~a~~~Gl~vilr~GPyi~aE~ 122 (650)
+.-++..+.+.++|++.-.+ .||-.||+|.|.= +..+-+++ ++|+++|+.+-+-|=|+ .++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~-~gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPI-EGDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcC-CCCc
Confidence 33445566889999999888 8999999998761 12333433 67889999999999885 3567
Q ss_pred CCCCC
Q 006326 123 TYGGF 127 (650)
Q Consensus 123 ~~gg~ 127 (650)
+..|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 66554
No 164
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.97 E-value=50 Score=34.05 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCC----CceeeeccchhHHHHHHHHHHcCCEEEEec-Ccc
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQ----PGEYDFGGRYDLVKFIKEIQAQGLYACLTI-GPF 117 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp~----~G~~df~g~~dl~~fl~~a~~~Gl~vilr~-GPy 117 (650)
.+++.++.++++|..+|.+ |..+... +-.+... ...|.++.+.|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 5667788999999999966 2223211 1112221 1368899999999999999987 443
No 165
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=34.87 E-value=59 Score=36.28 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEecCcccccccCCCCCC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY-ACLTIGPFIESEWTYGGFP 128 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~-vilr~GPyi~aE~~~gg~P 128 (650)
..+.-+..|+.+|++|+|+|=++++=.---+.+-.|.=. ..|-..++|++.|.|.. .+|..| ||+|
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 344567899999999999999987643222222222211 24667778899999998 668875 8888
No 166
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=34.51 E-value=1.2e+02 Score=32.69 Aligned_cols=68 Identities=21% Similarity=0.424 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee-CCc-cCCCCc-----eeeeccc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF-WNL-HEPQPG-----EYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIES 120 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~-W~~-hEp~~G-----~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~a 120 (650)
+.+.-++.++++++.|+-+=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 5556789999999999987766664 643 233223 2444332 289999999999999999998787753
No 167
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.40 E-value=1e+02 Score=32.18 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=65.2
Q ss_pred EEEEEecCCCCCc----ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcC--CEEEEecC
Q 006326 42 LFSGSIHYPRSTP----QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQG--LYACLTIG 115 (650)
Q Consensus 42 ~~sg~~hy~r~~~----~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~G--l~vilr~G 115 (650)
-+++..|+...|. +.=.++|++=-++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.|+...-
T Consensus 130 ~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~ 196 (274)
T cd00537 130 SIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIM 196 (274)
T ss_pred ccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeecc
Confidence 3455555543322 22234455555679999998554 3444 7999999999998 55777766
Q ss_pred cccc-------cccCCCCCCceeccC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 116 PFIE-------SEWTYGGFPFWLHDV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 116 Pyi~-------aE~~~gg~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
|-.. +++-.-.+|.|+.+. .. ...+....++.-.++..++++.+.+
T Consensus 197 p~~s~~~l~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 197 PLTSYKQAKRFAKLCGVEIPDWLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred ccCCHHHHHHHHHhhCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6533 355555689988752 11 1122234456667777788887764
No 168
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.32 E-value=1.7e+02 Score=26.76 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=40.3
Q ss_pred eEEEEEeecCCCCCCCCeEeecCcceEEEEEECCeEEEEEEcccC-------cceeEEEeecccCC-CCcEEEEEEecCC
Q 006326 439 YLWYTFSFQTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHD-------VKKFTMDIPIGLND-GMNNISILSVMAG 510 (650)
Q Consensus 439 yllY~t~i~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~-------~~~~~~~~~~~l~~-g~~~L~ILvEn~G 510 (650)
.+.|++.|..... ....+.+. ..|.+.+||||+.+-...+... ...... .+.+.+ +.+.|.|...+.+
T Consensus 47 ~~~~~G~~~~~~~-G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~--~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 47 SVRWTGYFKPPET-GTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSG--TVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEEEEEEEESSS-EEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEE--EEEE-TT-EEEEEEEEEECS
T ss_pred EEEEEEEEecccC-ceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEE--EEEeeCCeeEEEEEEEEECC
Confidence 4568888864321 12233333 6789999999999977665432 111222 223444 4688888876665
Q ss_pred Cc
Q 006326 511 LP 512 (650)
Q Consensus 511 r~ 512 (650)
..
T Consensus 123 ~~ 124 (145)
T PF07691_consen 123 GD 124 (145)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 169
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=33.73 E-value=84 Score=32.81 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-.+++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|+|.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999998 6665554432 2122333334449999999999987
No 170
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=33.70 E-value=77 Score=32.92 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-----c-----chhHHHHH--HHHHHcCCEEEEecCccc
Q 006326 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-----G-----RYDLVKFI--KEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 54 ~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~-----g-----~~dl~~fl--~~a~~~Gl~vilr~GPyi 118 (650)
.+..++.++.+.++|++.-.. .||-.||+|-+. + +..+.+.+ +.|+++|+.+.+-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 455788999999999998888 899999998765 1 12222322 678899999999998864
No 171
>PRK15492 triosephosphate isomerase; Provisional
Probab=33.24 E-value=87 Score=32.95 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-..++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|+|.|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999998 6666665543 2334566677889999999999987
No 172
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.86 E-value=47 Score=35.21 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=65.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCC--
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG---GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGF-- 127 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~---g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~-- 127 (650)
.-+.-++-++.+.++|+..|-+=.-|...+ ....+||+ ...||.++++-|++.|..|+|.- + |..+|-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 446678889999999999999966787622 23566765 34699999999999999988883 2 232221
Q ss_pred ------Cceecc-----CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCc
Q 006326 128 ------PFWLHD-----VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGP 173 (650)
Q Consensus 128 ------P~WL~~-----~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 173 (650)
-.+|.. ..++++=.-+. --+.+-+|+.+|++.-|++.|+..=+|+
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 111111 12233211111 1245667888899999988765444443
No 173
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=32.68 E-value=2.7e+02 Score=29.66 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=79.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
..+.-+-+|+.+|.-+. +|++|- =|-. -|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~-----------sDCn---~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG-----------SDCN---TLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee-----------ccch---hhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999998887 999973 1333 68889999999999999985 444
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCcHHHHHHHHHHHHhcCCcc
Q 006326 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 212 (650)
++ + . ..+++ .++..+.+ +..-..|..+-|.||-=.-...-...-.+|+...|.+++++|.++
T Consensus 111 dd--~-------~--~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 DD--I-------H--DAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred cc--h-------h--hhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 31 1 1 12221 33333432 122347888999999643211000134589999999999999999
Q ss_pred ceEEecc
Q 006326 213 PWVMCKQ 219 (650)
Q Consensus 213 p~~~~~~ 219 (650)
|+.+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9887765
No 174
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.27 E-value=88 Score=33.26 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC--CCc--eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP--QPG--EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp--~~G--~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++..++.++++++.|.+.|-+|.-+..-.+ .++ .++-+ .+.+++++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e---~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEE---ELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHH---HHHHHHHHHHHcCCEEEEEe
Confidence 3666888999999999999999975432111 112 23333 78899999999999988774
No 175
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.60 E-value=1.2e+02 Score=32.62 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=78.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--CCcc---CC------------------------CCceeeeccchhHHHHHHHH
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF--WNLH---EP------------------------QPGEYDFGGRYDLVKFIKEI 103 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~--W~~h---Ep------------------------~~G~~df~g~~dl~~fl~~a 103 (650)
+.+.-++.|+.|...++|++...+- |.+- .| ..|.|.- .++..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHH
Confidence 6788899999999999999998653 3331 11 1233333 4999999999
Q ss_pred HHcCCEEEEecCcccccccCCCC-CCceeccCCCeeeecC---------ChhHHHHHHHHHHHHHHHHHhcCcccccCCc
Q 006326 104 QAQGLYACLTIGPFIESEWTYGG-FPFWLHDVPNIVYRTD---------NEPFKFYMQNFTTKIVNLMKSSGLYASQGGP 173 (650)
Q Consensus 104 ~~~Gl~vilr~GPyi~aE~~~gg-~P~WL~~~p~~~~R~~---------~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 173 (650)
++.|+.||-.+ +.=| .=+|+..+|+...+.. |+ =...+-++++.|+..+++ ++- ..++
T Consensus 92 ~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~~--~f~-~~~~ 159 (326)
T cd06564 92 KDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYLD--GFN-PKSD 159 (326)
T ss_pred HHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHHH--hcC-CCCC
Confidence 99999998654 3222 2235544555333210 11 123444555555555553 221 1123
Q ss_pred eEEeccccccccchhh----cCCCcHHHHHHHHHHHHhcCCcc
Q 006326 174 IILSQIENEYQNIEKA----FGEAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 174 II~~QiENEyg~~~~~----~~~~~~~y~~~l~~~~~~~g~~v 212 (650)
.| +| |+-+.. ....-..|++.+.+.+++.|..+
T Consensus 160 ~~--Hi----GgDE~~~~~~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 160 TV--HI----GADEYAGDAGYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred EE--Ee----ccccccccCccHHHHHHHHHHHHHHHHHcCCeE
Confidence 32 32 321100 00112467888888888887663
No 176
>PRK09267 flavodoxin FldA; Validated
Probab=30.55 E-value=3.9e+02 Score=25.40 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=48.4
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 35 i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
+..-..++++...|....++..|.+-+++++...++-..+.+|= ......-.-.|. .-+..+-+.+.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556789999999877778889988888888878777777772 211111001122 235667777888896654
No 177
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=29.70 E-value=3e+02 Score=27.95 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=63.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcee
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWL 131 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~-g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL 131 (650)
.+.+++.-++.++++|+..+.+|..... ....|..+ |..|=..-+++|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5788999999999999999999988755 22223332 67888999999999988 323 34444
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006326 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSS 164 (650)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 164 (650)
.-+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 22336778889999999988753
No 178
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.49 E-value=77 Score=32.72 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP-GEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~-G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999998631100011111 11111 013578888999999999999873
No 179
>PRK14567 triosephosphate isomerase; Provisional
Probab=29.38 E-value=1.1e+02 Score=32.09 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-.++|++|++.|-+ -|..++--|. +....+.+=++.|.++||.+|+|.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 5655554443 3334566778889999999999987
No 180
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.16 E-value=1.2e+02 Score=23.58 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEE
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA 110 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~v 110 (650)
..-.+.+.-+.+.|+|.++++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456788889999999998876 2222234455555433 4889999999999865
No 181
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=28.42 E-value=71 Score=35.02 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=37.3
Q ss_pred cCCCCceeeec----------cchhHHHHH--HHHHHcCCEEEEecCcccccccCCCCC
Q 006326 81 HEPQPGEYDFG----------GRYDLVKFI--KEIQAQGLYACLTIGPFIESEWTYGGF 127 (650)
Q Consensus 81 hEp~~G~~df~----------g~~dl~~fl--~~a~~~Gl~vilr~GPyi~aE~~~gg~ 127 (650)
-|-.||+|.|. .+.|..+++ +.|.+.|+-+-+-|=| +-+.|+.+|-
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 35789999986 346777776 8889999999999977 9999998653
No 182
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.29 E-value=2.8e+02 Score=28.96 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCceeccCC
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYGGFPFWLHDVP 135 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~v--ilr~GPyi~aE~~~gg~P~WL~~~p 135 (650)
.+-++.++++|+++|++++- .|+--..+.....+.++|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999653 12111111111226788888899998863 33335552
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 136 NIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 136 ~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+-+-+.|+..++...+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12445577777777777766666544
No 183
>PLN02389 biotin synthase
Probab=27.94 E-value=88 Score=34.67 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCcee-------eeccchhHHHHHHHHHHcCCEEE
Q 006326 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEY-------DFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~-------df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
=++.++++|++|++.+..- .|..|..| +|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~-----LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHN-----LDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEee-----ecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 4788999999999988772 23222222 444 66788999999999874
No 184
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.88 E-value=1.4e+02 Score=35.59 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeeccch--hHHHHHHHHHHcCCEEEEecCccccc
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIES 120 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~W~~hEp-~~G~~df~g~~--dl~~fl~~a~~~Gl~vilr~GPyi~a 120 (650)
.-.+.++++++.|+-+=.+.+-+.++.. .-+.|.|+-.+ |..++++..++.|++|++..=|||..
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 3467789999999875433332332332 22466665332 78999999999999999999998864
No 185
>PRK06703 flavodoxin; Provisional
Probab=27.77 E-value=3.8e+02 Score=25.01 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=58.8
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 35 i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.....++++...+-.-.+|..+++-+..+++.-++...+.+|-...- .|.. .....+.+-+.+++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~----~y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT----AYPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC----ChHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 444455666554553334455677778877776666656666622110 0110 12345667777888999887764
Q ss_pred CcccccccCCCCCCceeccCCCeeee--cCChhHHHHHHHHHHHHHHHHH
Q 006326 115 GPFIESEWTYGGFPFWLHDVPNIVYR--TDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 115 GPyi~aE~~~gg~P~WL~~~p~~~~R--~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+++. .++..-++.++.|.++|++.++
T Consensus 121 ----------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ----------------------LKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ----------------------eEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1124667888888888887765
No 186
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.21 E-value=1.4e+02 Score=34.01 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=44.7
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
..|-+.|.+.-+++++++.++|++.|+++..-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34555677777889999999999999999875543 158889999999999887663
No 187
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.95 E-value=2.1e+02 Score=33.52 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=62.3
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcC--CEEEEecCcccc-------cccCCCCCCce
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQG--LYACLTIGPFIE-------SEWTYGGFPFW 130 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~G--l~vilr~GPyi~-------aE~~~gg~P~W 130 (650)
+|++-.++|-+.+-|-.| ||.+ .+.+|++.|+++| +.+|..+-|-.. +++..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444689999988544 5666 7899999999998 667777766543 34665557988
Q ss_pred eccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 131 LHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 131 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
+.+.=+ ....++...++.-.++..+++++|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 876211 12345566677777888888888874
No 188
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.83 E-value=2.7e+02 Score=28.75 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCC-Cceee---e-ccchhHHHHHHHHHHcCCEEEEecCcccccccCCCC
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYD---F-GGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGG 126 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~-~G~~d---f-~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg 126 (650)
+.++.-+...+.+++.|+..+.+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 3555666777888899998776421 112111 11100 0 0112578899999999999775321
Q ss_pred CCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006326 127 FPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (650)
Q Consensus 127 ~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 184 (650)
.+.|.. ..++...+...+.++.|++..+++ | |-+.+||--+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 111111 112333445555667777776643 3 3456788543
No 189
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.73 E-value=1.4e+02 Score=31.45 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
.|.+.=++++++..+.|+..|+++++-+- ++ .+...++.|++.|+.|...
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~~---~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------VR---NLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------HH---HHHHHHHHHHHCCCeEEEE
Confidence 45556688999999999999999887543 23 7889999999999988764
No 190
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=26.53 E-value=2e+02 Score=27.00 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-----cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-----GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGF 127 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~-----g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~ 127 (650)
.+.+.+.-++.++++|+..+.+|.... ....+|+ |..|=..-+..|++.|+. . |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~-----~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGG-----RETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccc-----ccccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 467889999999999999999988762 2223333 667888999999999983 2 34
Q ss_pred CceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006326 128 PFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (650)
Q Consensus 128 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 163 (650)
|-++.-+- -..+..+.+.+..|++.+...|..
T Consensus 96 ~IYfavD~----d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 96 PIYFAVDY----DATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEEEE--T----S-B-HH-------HHHHHHHHHGG
T ss_pred EEEEEeec----CCCchhhhhHHHHHHHHHHHHHhh
Confidence 44443221 124566778888899988888875
No 191
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.38 E-value=2.2e+02 Score=22.62 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHcCCCEEEEcee-CCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 56 MWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 56 ~W~~~l~k~k~~G~NtV~~yv~-W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
.-.+.++-+.+.|+|..+++.. ....+...-.+.+++ .+.+.+++..++.|..|+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 4467788899999999999864 111111222445554 466799999999998654
No 192
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.29 E-value=79 Score=35.11 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred eCCeEEECCeEeEEEEEEecCCC-CCcccHHHHHHHHHHc-CCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHc
Q 006326 29 DGRSLIIDGQRKILFSGSIHYPR-STPQMWPSLIAKAKEG-GLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQ 106 (650)
Q Consensus 29 ~~~~~~i~g~~~~~~sg~~hy~r-~~~~~W~~~l~k~k~~-G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~ 106 (650)
-.-+|-+...+-...+=|+.|+- .|.+.|+-+|..+.++ -=||+.+-|- |=+.|--++|+-. -|.+++++|++.
T Consensus 156 PrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~kl 231 (447)
T KOG0259|consen 156 PRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKL 231 (447)
T ss_pred CCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHh
Confidence 33334443333344444565555 4888899999999875 5688877543 7788888999888 899999999999
Q ss_pred CCEEEEe
Q 006326 107 GLYACLT 113 (650)
Q Consensus 107 Gl~vilr 113 (650)
||-||..
T Consensus 232 gi~vIaD 238 (447)
T KOG0259|consen 232 GIMVIAD 238 (447)
T ss_pred CCeEEeh
Confidence 9999876
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.25 E-value=88 Score=32.12 Aligned_cols=60 Identities=10% Similarity=-0.102 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.+.|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999764332111111111100111356777888999999999987
No 194
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.87 E-value=92 Score=34.14 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=41.8
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEcee---CCccCCCCceeeeccchhHHHHHHHHHHcCCE
Q 006326 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVF---WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY 109 (650)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~---W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~ 109 (650)
++-+.++..+. ++.++.+|++|+|.|++.|- -..++--....+++ ++.+.++.+++.|+.
T Consensus 89 it~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 89 FTFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 34455555444 57789999999999999764 22333333345555 888999999999986
No 195
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.76 E-value=56 Score=35.47 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEE-Ec-eeCC--c-cCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 58 PSLIAKAKEGGLHVIQ-TY-VFWN--L-HEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~-~y-v~W~--~-hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
++.+++||++|++.+. +. -.-+ . +.-.|+...++ +..+.++.|+++||.|.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 6789999999999874 11 0000 0 01123333343 56789999999999763
No 196
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=25.22 E-value=1.7e+02 Score=36.50 Aligned_cols=115 Identities=12% Similarity=0.150 Sum_probs=71.1
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccccc
Q 006326 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESE 121 (650)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~--~dl~~fl~~a~~~Gl~vilr~GPyi~aE 121 (650)
+|..|+ +.+.-++.++++++.|+-+=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 444453 3445678899999999988777776666543 335666532 3889999999999999988878888764
Q ss_pred cCC-----C-CCCceeccCCCeee-------ecCChhH-HHHHHHHHHHHHHHHH
Q 006326 122 WTY-----G-GFPFWLHDVPNIVY-------RTDNEPF-KFYMQNFTTKIVNLMK 162 (650)
Q Consensus 122 ~~~-----g-g~P~WL~~~p~~~~-------R~~~~~y-~~~~~~~~~~l~~~l~ 162 (650)
-.+ | .--.|+.+..+-.+ .+.-+.| -.++++|+..+.+.+.
T Consensus 269 ~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~ 323 (978)
T PLN02763 269 EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV 323 (978)
T ss_pred CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh
Confidence 211 1 01234433111111 1112344 3567778887777654
No 197
>PRK07094 biotin synthase; Provisional
Probab=25.17 E-value=63 Score=34.50 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEEcee---CCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 58 PSLIAKAKEGGLHVIQTYVF---WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~---W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
++.+++||++|++.|.+.+- -..++.--...+++ +..+.++.++++|+.|.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEVG 182 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCeec
Confidence 57788999999999887432 11222111234455 77788999999998643
No 198
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.91 E-value=1.1e+02 Score=31.93 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
No 199
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=24.79 E-value=2.7e+02 Score=25.36 Aligned_cols=49 Identities=8% Similarity=0.027 Sum_probs=29.8
Q ss_pred cCcceEEEEEECCeEEEEEEcccCcceeEEEeecccCCCCcEEEE-EEecCCC
Q 006326 460 ESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISI-LSVMAGL 511 (650)
Q Consensus 460 ~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~I-LvEn~Gr 511 (650)
.+.+|.+.|++||+.+-+-.-...+...++. + -+.|.+.++| |+..-|-
T Consensus 45 G~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~--v-~kgG~y~m~V~lCn~dGC 94 (106)
T cd02848 45 GDPGDTYKVLLDGKEVWSGALTGSSGTATFK--V-GKGGRYQMQVALCNGDGC 94 (106)
T ss_pred CCCCcEEEEEECCeEEEcccCCCCccEEEEE--e-CCCCeEEEEEEEECCCCc
Confidence 5689999999999887443322111223333 2 2346777887 7766663
No 200
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.55 E-value=1.1e+02 Score=31.89 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=32.6
Q ss_pred EECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEE
Q 006326 34 IIDGQRKILFSGSIHYPRS-TPQMWPSLIAKAKEGGLHVIQT 74 (650)
Q Consensus 34 ~i~g~~~~~~sg~~hy~r~-~~~~W~~~l~k~k~~G~NtV~~ 74 (650)
.+.|+++..+.|..|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997765 3344467889999999987644
No 201
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=24.40 E-value=82 Score=37.63 Aligned_cols=57 Identities=16% Similarity=0.368 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEE-cee--------CCccCCC----Cceeeec----cchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQT-YVF--------WNLHEPQ----PGEYDFG----GRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~-yv~--------W~~hEp~----~G~~df~----g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+++|..+|.+|+|+|+. .|| |.++--. -+.|-=. -..++.+++|.|++.||-|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45699999999999997 232 4332110 0111000 02489999999999999999986
No 202
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=24.31 E-value=92 Score=32.35 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCccccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIES 120 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~a 120 (650)
+.-++.++++|++|+ -|+.++ +|. ..-++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 335677888999998 667754 565 345888999999855 999999865
No 203
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.16 E-value=1.6e+02 Score=30.88 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
..++|++|++.|-+ -|..++--|. +.+..+.+=++.|.++||.+|+|.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46799999999998 6666555442 3345788889999999999999987
No 204
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=24.00 E-value=91 Score=38.24 Aligned_cols=85 Identities=20% Similarity=0.436 Sum_probs=55.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEE------------ceeCCccC------CCCceeeeccchhHHHHHHHHH-HcCCEEEEe
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQT------------YVFWNLHE------PQPGEYDFGGRYDLVKFIKEIQ-AQGLYACLT 113 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~------------yv~W~~hE------p~~G~~df~g~~dl~~fl~~a~-~~Gl~vilr 113 (650)
|-+.|+.+|+++|+.|.|+|.. |-.-+.|| ...++|.|+ |+..+++.++ +-++.-|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 5588999999999999999975 22222222 234678898 9999998885 455544332
Q ss_pred cCcccccccC-CCCCCceeccCCCeeeecCChhH
Q 006326 114 IGPFIESEWT-YGGFPFWLHDVPNIVYRTDNEPF 146 (650)
Q Consensus 114 ~GPyi~aE~~-~gg~P~WL~~~p~~~~R~~~~~y 146 (650)
. + |+ ++.=-.||..+|+...-.-+.++
T Consensus 217 v---V---~NHtAnns~WlleHPea~Yn~~~sPh 244 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEAAYNCVNSPH 244 (1521)
T ss_pred h---h---hhccccCCchhHhCchhhhcccCCcc
Confidence 2 1 11 22345799999986544444333
No 205
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=23.95 E-value=1.1e+02 Score=33.14 Aligned_cols=44 Identities=25% Similarity=0.204 Sum_probs=28.7
Q ss_pred eCCeEEECCeEeEEEEEEecCCCCC-cccHHHHH-HHHHHcCCCEEEEc
Q 006326 29 DGRSLIIDGQRKILFSGSIHYPRST-PQMWPSLI-AKAKEGGLHVIQTY 75 (650)
Q Consensus 29 ~~~~~~i~g~~~~~~sg~~hy~r~~-~~~W~~~l-~k~k~~G~NtV~~y 75 (650)
|.+.+.|||||++++ +.+..++ ....-+.+ +.+|++|+.-|-+=
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyii 195 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYII 195 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEEE
Confidence 788899999999887 4443332 12233333 56788999866553
No 206
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.86 E-value=4.1e+02 Score=29.96 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=56.8
Q ss_pred CeEEECCeEeEEEEEEecCCCCCc---ccHHHHHHHHHHcCCCE--E--EEceeCCccCCCCceeeeccchhHHHHHHHH
Q 006326 31 RSLIIDGQRKILFSGSIHYPRSTP---QMWPSLIAKAKEGGLHV--I--QTYVFWNLHEPQPGEYDFGGRYDLVKFIKEI 103 (650)
Q Consensus 31 ~~~~i~g~~~~~~sg~~hy~r~~~---~~W~~~l~k~k~~G~Nt--V--~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a 103 (650)
++..+.+.-|+|+.+.-+-++.++ +.=+.-.+.+++.|++. | ...-.-|+-.|.+..++++ ..-+..-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 445677788999977776665432 33344456677787763 3 2222278878888888776 33577778999
Q ss_pred HHcCCE-EEEecC
Q 006326 104 QAQGLY-ACLTIG 115 (650)
Q Consensus 104 ~~~Gl~-vilr~G 115 (650)
.+.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 677787
No 207
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=23.66 E-value=1.4e+02 Score=36.30 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCC--EEEEceeCCccCCCCceeeec----cchhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006326 57 WPSLIAKAKEGGLH--VIQTYVFWNLHEPQPGEYDFG----GRYDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (650)
Q Consensus 57 W~~~l~k~k~~G~N--tV~~yv~W~~hEp~~G~~df~----g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~ 123 (650)
-+++.+.+++||+. ++-+=+.| .++-=||+ .-.++..|++..++.|+++++-+-|+|..--.
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDy-----Md~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDY-----MDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhh-----hhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 47899999999998 44443444 33323443 11368999999999999999999888854333
No 208
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.30 E-value=1.4e+02 Score=30.26 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=41.5
Q ss_pred ecCCCCCccc--HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 006326 47 IHYPRSTPQM--WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (650)
Q Consensus 47 ~hy~r~~~~~--W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GP 116 (650)
-|+....... =+.-+++++++|.+.|-+ -|. +..-.|. .+.++++.|+++||.+|++.|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii-----~~s--er~~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI-----NHS--ERRLTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE-----ecc--ccccCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 5665543222 223488999999999987 331 1123344 5899999999999999998764
No 209
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=23.30 E-value=1.6e+02 Score=28.15 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=46.6
Q ss_pred CeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEcee-CCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEec
Q 006326 37 GQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY-ACLTI 114 (650)
Q Consensus 37 g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~-W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~-vilr~ 114 (650)
++|.+++ +|-.-.....|+..++.++ .|+++|..=.. ....+..+..+++.. ..+.+.+.+++.+.. |++ .
T Consensus 12 ~~~~li~---~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~l-i 84 (251)
T TIGR02427 12 GAPVLVF---INSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVF-C 84 (251)
T ss_pred CCCeEEE---EcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEE-E
Confidence 5677666 4666667788998888886 47877766443 444444444555552 233344444555543 332 2
Q ss_pred CcccccccCCCCCCce
Q 006326 115 GPFIESEWTYGGFPFW 130 (650)
Q Consensus 115 GPyi~aE~~~gg~P~W 130 (650)
| +..||.=++
T Consensus 85 G------~S~Gg~~a~ 94 (251)
T TIGR02427 85 G------LSLGGLIAQ 94 (251)
T ss_pred E------eCchHHHHH
Confidence 2 577776544
No 210
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=23.19 E-value=54 Score=33.04 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=51.6
Q ss_pred CCeE-eEEEEEEecCC-CCCcccHHHHHHHHHHcCCCEEEEceeCCccC--------CCCc----eeeeccchhHHHHHH
Q 006326 36 DGQR-KILFSGSIHYP-RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE--------PQPG----EYDFGGRYDLVKFIK 101 (650)
Q Consensus 36 ~g~~-~~~~sg~~hy~-r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hE--------p~~G----~~df~g~~dl~~fl~ 101 (650)
.+++ +.+.-|.-+.. ++|.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 3444 44444544544 479999999999999999 55567787666 1122 578888889999999
Q ss_pred HHHHcCCEEEEecCc
Q 006326 102 EIQAQGLYACLTIGP 116 (650)
Q Consensus 102 ~a~~~Gl~vilr~GP 116 (650)
+.+...+.|-...||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 999999988888776
No 211
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.10 E-value=63 Score=35.24 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCEEE-----EceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 57 WPSLIAKAKEGGLHVIQ-----TYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 57 W~~~l~k~k~~G~NtV~-----~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
-++.++++|++|++.+. ++..--.+.-.++....+ ...+.++.|++.|+.+.
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 46679999999997664 211111122334443333 55678999999999864
No 212
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.09 E-value=1.6e+02 Score=30.62 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-.+++|++|++.|-+ -|..++--|.=+ +..+.+=++.|.++||.+|+|.|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999988 565554333211 12233333889999999999987
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.01 E-value=1.4e+02 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
.+++...+.++.++++|+..|-+. +| + .-+++++.|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g----~---~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG----A---ESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT----S-----HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc----h---HHHHHHHHHHHcCCEEE
Confidence 377889999999999998876551 12 2 56889999999999865
No 214
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.92 E-value=2.3e+02 Score=25.75 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=39.9
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHc-CCEEEEe
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQ-GLYACLT 113 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~-Gl~vilr 113 (650)
-|.+.+..++++|+..|+++|..-.-=-...|.+ . -- .++.+.+..++. |+.||..
T Consensus 49 Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~-~--CP---~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 49 CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG-P--CP---HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC-C--CC---CHHHHHHHHHHHhCCCEeee
Confidence 4577789999999999999998864322222222 1 11 478888888887 9999875
No 215
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=22.92 E-value=2e+02 Score=31.32 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEecCcccccccCCC
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY-ACLTIGPFIESEWTYG 125 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~-vilr~GPyi~aE~~~g 125 (650)
..-.|+.--.-.+.+||-||.+|-+|+.-+.. + |++.||...+.+=-+ ||+.. .||--++|
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---~------d~e~~Lsdl~~APe~si~iLh---aCAhNPTG 192 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---V------DLEGFLSDLESAPEGSIIILH---ACAHNPTG 192 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---e------cHHHHHHHHhhCCCCcEEeee---ccccCCCC
Confidence 44569999999999999999999999976543 2 577777777665444 33333 58777776
No 216
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.89 E-value=2.5e+02 Score=30.28 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEce----eCCccC---CC---Cc----eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 52 STPQMWPSLIAKAKEGGLHVIQTYV----FWNLHE---PQ---PG----EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 52 ~~~~~W~~~l~k~k~~G~NtV~~yv----~W~~hE---p~---~G----~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.+.+..++.|+.|...++|+...++ -|.+-- |+ .| .|.-+ |+..+++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEee
Confidence 3678889999999999999999987 375421 11 22 34333 99999999999999999765
No 217
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.82 E-value=1.6e+02 Score=30.87 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=45.0
Q ss_pred CeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecC
Q 006326 37 GQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 37 g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~-g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
| ++.+..=.+|+...-.-.=+--..++|++|++.|-+ -|..++ -.|. ....+.+=++.|.++||.+|||.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii-----GHSERR--~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI-----GHSERR--LYFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE-----Cccccc--cccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 5 555555556665431111112345799999999988 454443 3343 223456778999999999999987
No 218
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.82 E-value=1.5e+02 Score=32.08 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCC------CC-----------ceeeeccchhHHHHHHHHHHcCCEEE
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEP------QP-----------GEYDFGGRYDLVKFIKEIQAQGLYAC 111 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hEp------~~-----------G~~df~g~~dl~~fl~~a~~~Gl~vi 111 (650)
+.+..++.|+.|...++|++..++- |.+.-+ .. |.|.- .++.++++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEE
Confidence 7788899999999999999999873 654321 12 23333 499999999999999999
Q ss_pred Eec
Q 006326 112 LTI 114 (650)
Q Consensus 112 lr~ 114 (650)
-.+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 664
No 219
>PRK09875 putative hydrolase; Provisional
Probab=22.73 E-value=1.8e+02 Score=31.13 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~ 133 (650)
+.=...|+.+|++|.+||-= ..+- .-.||...+.+++++-|+.||..+|-|.- .-.|.|+..
T Consensus 34 ~~~~~el~~~~~~Gg~tiVd--------~T~~----g~GRd~~~l~~is~~tgv~Iv~~TG~y~~-----~~~p~~~~~ 95 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIE--------MTNR----YMGRNAQFMLDVMRETGINVVACTGYYQD-----AFFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHhCCCeEEe--------cCCC----ccCcCHHHHHHHHHHhCCcEEEcCcCCCC-----ccCCHHHhc
Confidence 33445788899999999843 2211 11359999999999999999999998852 225778764
No 220
>PLN02429 triosephosphate isomerase
Probab=22.68 E-value=1.5e+02 Score=32.02 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHH----HHHcCCEEEEecC
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKE----IQAQGLYACLTIG 115 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~----a~~~Gl~vilr~G 115 (650)
.+++|++|++.|-+ -|..++-. |. .-++++.. |.++||.+|+|.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~--f~---Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHV--IG---EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCC--CC---cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999998888 55555443 43 34556655 9999999999987
No 221
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=22.66 E-value=2.5e+02 Score=31.38 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=63.8
Q ss_pred HcCCCEEEEcee---CCccCCC--Cceeeeccc------hhH---HHHHHHHHHcC---CEEEEecCcccccccCCCCCC
Q 006326 66 EGGLHVIQTYVF---WNLHEPQ--PGEYDFGGR------YDL---VKFIKEIQAQG---LYACLTIGPFIESEWTYGGFP 128 (650)
Q Consensus 66 ~~G~NtV~~yv~---W~~hEp~--~G~~df~g~------~dl---~~fl~~a~~~G---l~vilr~GPyi~aE~~~gg~P 128 (650)
.+|+|..++++. .+.||-. .-..||+-. .|+ -.||+.|++.. |+...-| |. -|
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsP-------Ws---aP 204 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASP-------WS---AP 204 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecC-------CC---CC
Confidence 466777788765 5555532 222334311 122 36889998744 6666554 54 69
Q ss_pred ceeccCCCee----ee-cCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006326 129 FWLHDVPNIV----YR-TDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (650)
Q Consensus 129 ~WL~~~p~~~----~R-~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 184 (650)
.||+....|+ ++ .....|-+...+||-+.++.+++|.+ .-=++-++||--
T Consensus 205 gWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi------~FWglt~qNEPs 259 (518)
T KOG2566|consen 205 GWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGI------QFWGLTTQNEPS 259 (518)
T ss_pred ceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCc------eEEeecccCCCC
Confidence 9998654332 33 34457888888888889899887654 334566789874
No 222
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=22.65 E-value=3.8e+02 Score=26.49 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHcCCEEEEecCcccccccCC-----C--CCCceeccCCC
Q 006326 94 YDLVKFIKEIQAQGLYACLTIGPFIESEWTY-----G--GFPFWLHDVPN 136 (650)
Q Consensus 94 ~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~-----g--g~P~WL~~~p~ 136 (650)
..+..|++.+++.|.++++=.+++.....-. . ..|-|+.+++.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3578899999999998888777664333211 1 13589987654
No 223
>PLN02284 glutamine synthetase
Probab=22.21 E-value=2.4e+02 Score=31.00 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=41.6
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeecc----------chhH-HHHH-HHHHHcCCEEEEecCcccccccCCCC
Q 006326 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGG----------RYDL-VKFI-KEIQAQGLYACLTIGPFIESEWTYGG 126 (650)
Q Consensus 61 l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g----------~~dl-~~fl-~~a~~~Gl~vilr~GPyi~aE~~~gg 126 (650)
.+.+.++|+..-.+ .||-.||+|-+.= +..+ ...+ ++|+++|+.+..-|=|+. ++|+.-|
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~-~~~~GSG 247 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP-GDWNGAG 247 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC-CCCccCc
Confidence 34449999998888 8999999987641 1112 2233 578999999999998853 4444433
No 224
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=22.14 E-value=1.4e+02 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCC------CCc---------eeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEP------QPG---------EYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hEp------~~G---------~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
+.+.-++.|+.|...++|++..++- |.+--+ +.| .|.-+ |+..+++.|++.||.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceeee
Confidence 5677889999999999999999874 433221 122 34444 9999999999999999966
Q ss_pred c
Q 006326 114 I 114 (650)
Q Consensus 114 ~ 114 (650)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 225
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.96 E-value=1.6e+02 Score=31.66 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=49.8
Q ss_pred EEEEEecCC-CCCcccHHHHHHHHHHcCCCEEEEceeCCccC-------------CCCceeeeccchhHHHHHHHHHHcC
Q 006326 42 LFSGSIHYP-RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-------------PQPGEYDFGGRYDLVKFIKEIQAQG 107 (650)
Q Consensus 42 ~~sg~~hy~-r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hE-------------p~~G~~df~g~~dl~~fl~~a~~~G 107 (650)
+.-|+-+.. |||.|.|.+.++.+++.|+..| +++.-.| ..+...|..|..+|..+..+.+...
T Consensus 188 i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 264 (352)
T PRK10422 188 IQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQ 264 (352)
T ss_pred EecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCC
Confidence 333443343 4799999999999988887655 3444322 1223567788888888888888888
Q ss_pred CEEEEecCcc
Q 006326 108 LYACLTIGPF 117 (650)
Q Consensus 108 l~vilr~GPy 117 (650)
++|--..||-
T Consensus 265 l~v~nDSGp~ 274 (352)
T PRK10422 265 LFIGVDSAPA 274 (352)
T ss_pred EEEecCCHHH
Confidence 8777777663
No 226
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=21.74 E-value=3.3e+02 Score=29.71 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCC------CCc------eeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEP------QPG------EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 53 ~~~~W~~~l~k~k~~G~NtV~~yv~----W~~hEp------~~G------~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.+.-++.++.|-...+|+....+- |.+--+ +.| .|.-+ |+..+++.|++.|+.||-.+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~---di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPE---DVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHH---HHHHHHHHHHHcCCEEEEec
Confidence 5788899999999999999998752 554322 123 34444 99999999999999999765
No 227
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=21.71 E-value=62 Score=33.62 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-.+++|++|++.|-+ -|..++--|. +....+.+=++.|.++||.+|+|.|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 356899999999988 4544433332 3455788999999999999999987
No 228
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.49 E-value=1e+02 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCccccc
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIES 120 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vi-lr~GPyi~a 120 (650)
+.-++.++++|++|+- |+. +.+|. .+-++.|++.|-..| |-+|||..+
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd------------~~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPD------------PEQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 3456788999999994 777 34565 345889999999866 999999753
No 229
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.35 E-value=1.8e+02 Score=31.75 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++++++.+.|++.|++.++++.. + .+...++.|++.|+.|...+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------~---~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------D---VSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------H---HHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999998765532 1 57899999999999988764
No 230
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.34 E-value=1.2e+02 Score=31.55 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEcee-CCcc---CCCCceeee-ccchhHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 006326 51 RSTPQMWPSLIAKAKEGGLHVIQTYVF-WNLH---EPQPGEYDF-GGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYG 125 (650)
Q Consensus 51 r~~~~~W~~~l~k~k~~G~NtV~~yv~-W~~h---Ep~~G~~df-~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~g 125 (650)
+.+++.|++..+..|+.|+..+++.+- -++. +...-.|.- ++...--.+|+.+++.|+.|||-+|-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~--------- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM--------- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---------
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC---------
Confidence 368899999999999999999999653 2221 112223332 34444456899999999999999872
Q ss_pred CCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCcHHHHHHHHHHH
Q 006326 126 GFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMA 205 (650)
Q Consensus 126 g~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 205 (650)
.-++++++.++.+ ++ ..+.+|+..|-=-.|=.. ...+.-..+..|++++
T Consensus 123 -------------------stl~EI~~Av~~~----~~-----~~~~~l~llHC~s~YP~~---~e~~NL~~i~~L~~~f 171 (241)
T PF03102_consen 123 -------------------STLEEIERAVEVL----RE-----AGNEDLVLLHCVSSYPTP---PEDVNLRVIPTLKERF 171 (241)
T ss_dssp ---------------------HHHHHHHHHHH----HH-----HCT--EEEEEE-SSSS-----GGG--TTHHHHHHHHS
T ss_pred -------------------CCHHHHHHHHHHH----Hh-----cCCCCEEEEecCCCCCCC---hHHcChHHHHHHHHhc
Confidence 1235555555544 21 234578888754444321 1123445677777766
No 231
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.30 E-value=3.2e+02 Score=30.26 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCceeccCCCe------eeecC-ChhHHHHHHHHHHHHHHHHHhcCcccccCCceE
Q 006326 103 IQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNI------VYRTD-NEPFKFYMQNFTTKIVNLMKSSGLYASQGGPII 175 (650)
Q Consensus 103 a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~~~p~~------~~R~~-~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 175 (650)
+-..|+.|..-| |+ +|+||+..-.+ +||-+ .+.|-+ |+...+..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~----~l~~fv~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYAD----YLNDFVLEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHH----HHHHHHHHHH------hCCCcee
Confidence 567899988887 65 89999864322 23322 233333 3333333334 4566888
Q ss_pred EeccccccccchhhcCC---CcHHHHHHHHHHHHhc
Q 006326 176 LSQIENEYQNIEKAFGE---AGPSYVRWAAKMAVEL 208 (650)
Q Consensus 176 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~ 208 (650)
+.-|.||-.... .|+. ..++..+.+++-++..
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si 205 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASI 205 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhh
Confidence 888889977432 1221 3566677777766553
No 232
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.21 E-value=1.2e+02 Score=30.91 Aligned_cols=59 Identities=12% Similarity=-0.090 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcc-CCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLH-EPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~h-Ep~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+.+++.++.++++|..+|.+..-+.-- .+.+-.++ .-...+.++.+.|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567888999999999999863221100 00010010 011357888899999999999987
No 233
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.17 E-value=79 Score=33.29 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.-+++|+.|-+.|-+-|.|-.-|++-.+-... -+++|...|+.++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk~a---~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQKLA---YIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHHHH---HHHHHHHHhhhcCCceeEee
Confidence 45789999999999999999999943333333 68999999999999999997
No 234
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=20.99 E-value=1.9e+02 Score=31.30 Aligned_cols=63 Identities=29% Similarity=0.411 Sum_probs=47.1
Q ss_pred EECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 006326 34 IIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 34 ~i~g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr 113 (650)
.+.|+++..++|--++.+ -++.++++|++.+.+..| |..+.|+ ..|++.+.+.|++.| .||.
T Consensus 224 ~l~~~~v~a~sGIg~P~~--------F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~--~ilt 285 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNPER--------FFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG--IILT 285 (326)
T ss_pred hccCCeeEEEEEcCChHH--------HHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc--eEEe
Confidence 478999999999887533 356678899999987655 4555565 338999999999988 5555
Q ss_pred c
Q 006326 114 I 114 (650)
Q Consensus 114 ~ 114 (650)
+
T Consensus 286 T 286 (326)
T PF02606_consen 286 T 286 (326)
T ss_pred c
Confidence 3
No 235
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.95 E-value=3.5e+02 Score=30.45 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCEEEEcee----CCccCCCCceeeeccchhHHHHHHHHHHcCCE--EEEecCcccccccCCCCCCcee
Q 006326 58 PSLIAKAKEGGLHVIQTYVF----WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY--ACLTIGPFIESEWTYGGFPFWL 131 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~----W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~--vilr~GPyi~aE~~~gg~P~WL 131 (650)
...++.+.+.|.|++++++- |..-+..+ .++++|.+.++++||. .++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 34778899999999999863 54433332 2799999999999885 244456773
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006326 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (650)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 162 (650)
+-+-+.|+..++...+.+.+-+++-+
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12344566666666666655555544
No 236
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.91 E-value=6.2e+02 Score=25.83 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=56.3
Q ss_pred eEEECCeEeEEEEEEecCCCC--Cc-----------------------ccHHHHHHHHHHcCCCEEEEceeCCc-cCCCC
Q 006326 32 SLIIDGQRKILFSGSIHYPRS--TP-----------------------QMWPSLIAKAKEGGLHVIQTYVFWNL-HEPQP 85 (650)
Q Consensus 32 ~~~i~g~~~~~~sg~~hy~r~--~~-----------------------~~W~~~l~k~k~~G~NtV~~yv~W~~-hEp~~ 85 (650)
-+.++|.++-+++........ +. +.-.++++++| .+.+.|=++++|.. .+..|
T Consensus 123 i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p 201 (250)
T PF09587_consen 123 IIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENYP 201 (250)
T ss_pred EEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCCC
Confidence 356699999999988664321 10 33567788888 68999999999963 33333
Q ss_pred ceeeeccchhHHHHHHHHHHcCCEEEEecCccc
Q 006326 86 GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (650)
Q Consensus 86 G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi 118 (650)
. .+..++.+.+-++|..+|+.-.|-+
T Consensus 202 ~-------~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 202 T-------PEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred C-------HHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 2 2667788888889999999876644
No 237
>PLN02561 triosephosphate isomerase
Probab=20.90 E-value=1.9e+02 Score=30.31 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 006326 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (650)
Q Consensus 60 ~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~G 115 (650)
-..++|++|++.|-+ -|..++..|. +.+..+.+=++.|.++||.+|+|.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 356799999999998 5665555442 2234667777889999999999987
No 238
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.89 E-value=71 Score=31.26 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCccccccc---CCCCCCceeccCCC
Q 006326 94 YDLVKFIKEIQAQ-GLYACLTIGPFIESEW---TYGGFPFWLHDVPN 136 (650)
Q Consensus 94 ~dl~~fl~~a~~~-Gl~vilr~GPyi~aE~---~~gg~P~WL~~~p~ 136 (650)
..+.+|++.++++ |..++|=.+++..... .....|.||.+++.
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~~ 149 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYGV 149 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEeccC
Confidence 4678999999988 9998888777543322 22346788887543
No 239
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.87 E-value=3.5e+02 Score=27.40 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHHcCCCE-EEE--ceeCCccCC---CCc--eeeec-----------c--chhHHHHHHHHHHcCCEEEEe
Q 006326 55 QMWPSLIAKAKEGGLHV-IQT--YVFWNLHEP---QPG--EYDFG-----------G--RYDLVKFIKEIQAQGLYACLT 113 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~Nt-V~~--yv~W~~hEp---~~G--~~df~-----------g--~~dl~~fl~~a~~~Gl~vilr 113 (650)
+.-.+.++++|+.|+.| |+| |+.|...+. .=. -+|+- | +..+-+.|+.+.+.|..+.+|
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR 133 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR 133 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 44578899999999874 444 444422221 111 22322 2 123445567778888888888
Q ss_pred cCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccch------
Q 006326 114 IGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIE------ 187 (650)
Q Consensus 114 ~GPyi~aE~~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~------ 187 (650)
. |. .|++ ++++.-++++.+|++.+. +. +|-...- +-+|...
T Consensus 134 ~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpy-h~~g~~Ky~~lg~ 180 (213)
T PRK10076 134 L-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPF-HQYGEPKYRLLGK 180 (213)
T ss_pred E-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecC-CccchhHHHHcCC
Confidence 5 21 3443 344555555555554331 10 2211111 1112100
Q ss_pred ----hhcCCCcHHHHHHHHHHHHhcCCcc
Q 006326 188 ----KAFGEAGPSYVRWAAKMAVELETGV 212 (650)
Q Consensus 188 ----~~~~~~~~~y~~~l~~~~~~~g~~v 212 (650)
.....+..+.++.+++.+++.|+.+
T Consensus 181 ~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 0122468899999999999988875
No 240
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.58 E-value=1.7e+02 Score=33.11 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=41.1
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEcee-CC--ccCCCCceeeeccchhHHHHHHHHHHcCCE
Q 006326 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVF-WN--LHEPQPGEYDFGGRYDLVKFIKEIQAQGLY 109 (650)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~G~NtV~~yv~-W~--~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~ 109 (650)
++-+.++..+. ++.|+.||++|+|.|++.|- =+ .++.-.+..+++ ++.+.++.++++|+.
T Consensus 141 ~tie~~p~~lt----~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~---~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 141 IAVEIDPRTVT----AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEE---MVARAVELLRAAGFE 203 (453)
T ss_pred EEEEeccccCC----HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHH---HHHHHHHHHHhcCCC
Confidence 44556655554 57899999999999999763 11 111122334555 788899999999985
No 241
>PRK15447 putative protease; Provisional
Probab=20.36 E-value=2e+02 Score=30.76 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEcee-CCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 50 PRSTPQMWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~G~NtV~~yv~-W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
+-||.+.-++-...+++.|.++|-+... -+..- .|..+ ++.+.++.|+++|.+|.+..
T Consensus 10 ~~~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~----~f~~~---~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 10 YYWPKETVRDFYQRAADSPVDIVYLGETVCSKRR----ELKVG---DWLELAERLAAAGKEVVLST 68 (301)
T ss_pred cCCCCCCHHHHHHHHHcCCCCEEEECCccCCCcc----CCCHH---HHHHHHHHHHHcCCEEEEEe
Confidence 3467777788889999999999888632 12221 23334 89999999999999998875
No 242
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.28 E-value=1.9e+02 Score=31.49 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 006326 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (650)
Q Consensus 58 ~~~l~k~k~~G~NtV~~yv~W~~hEp~~G~~df~g~~dl~~fl~~a~~~Gl~vilr~ 114 (650)
.++++++.+.|+..|++.++.+.. ......++.|++.|+.|...+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 467999999999999998864432 157899999999999988664
No 243
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.20 E-value=89 Score=32.49 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCC--ceeeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006326 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP--GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (650)
Q Consensus 55 ~~W~~~l~k~k~~G~NtV~~yv~W~~hEp~~--G~~df~g~~dl~~fl~~a~~~Gl~vilr~GPyi~aE~~~gg~P~WL~ 132 (650)
-.|+++|.-+|++||+-|+.-| -|..+ -.-||+.. -.-.+.+++.+.|+. + |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~~-er~~l~~ai~etgv~----i-pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSV----DESDERLARLDWSKE-ERLALVNAIQETGVR----I-PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCHH-HHHHHHHHHHHhCCC----c-cchh-----------hh
Confidence 4599999999999999999844 45433 46677632 345667888888873 2 2233 11
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHH
Q 006326 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNL 160 (650)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~ 160 (650)
.+...-+-+.|+.-++.....+.+-+..
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~L 104 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQL 104 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1211125678999888888777765543
Done!