Your job contains 1 sequence.
>006327
MEVAKFSEDKVSNYDNKERLGDSSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEEEEL
ENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDD
MEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV
RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICN
TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV
VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL
ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKG
GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFD
NRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRR
QPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPV
IPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPYPPYYGDDRLYGGGYFY
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006327
(650 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 797 6.7e-87 3
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 371 5.2e-34 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 331 2.8e-27 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 327 7.9e-27 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 327 7.9e-27 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 324 1.2e-26 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 305 1.5e-26 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 303 2.4e-26 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 322 2.9e-26 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 322 2.9e-26 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 322 3.0e-26 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 319 6.4e-26 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 319 7.8e-26 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 316 9.8e-26 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 317 1.4e-25 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 317 1.4e-25 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 317 1.4e-25 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 313 2.0e-25 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 313 2.0e-25 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 314 2.4e-25 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 314 2.5e-25 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 313 3.2e-25 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 312 3.4e-25 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 304 3.5e-25 2
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 313 3.7e-25 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 312 4.9e-25 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 312 5.0e-25 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 312 5.3e-25 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 301 8.0e-25 2
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 305 8.1e-25 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 310 8.6e-25 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 306 9.7e-25 2
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 307 1.0e-24 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 305 1.0e-24 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 305 1.0e-24 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 314 1.0e-24 2
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 308 1.2e-24 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 308 1.2e-24 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 308 1.4e-24 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 305 1.7e-24 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 305 1.7e-24 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 305 1.7e-24 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 305 1.7e-24 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 305 2.6e-24 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 305 2.6e-24 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 303 2.9e-24 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 303 3.5e-24 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 303 4.4e-24 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 303 4.5e-24 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 304 6.0e-24 2
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 299 1.3e-23 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 297 1.7e-23 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 296 3.1e-23 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 281 6.8e-23 2
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 289 9.9e-23 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 287 1.1e-22 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 291 1.6e-22 1
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 280 7.3e-22 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 262 4.3e-20 1
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 231 1.7e-18 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 220 2.7e-17 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 244 2.7e-17 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 234 3.9e-17 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 237 1.7e-16 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 234 3.3e-16 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 221 3.7e-15 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 219 5.0e-15 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 223 5.2e-15 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 223 5.2e-15 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 223 5.3e-15 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 223 5.3e-15 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 223 5.3e-15 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 198 6.5e-15 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 220 1.1e-14 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 219 1.1e-14 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 219 1.2e-14 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 219 1.2e-14 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 218 1.2e-14 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 218 1.9e-14 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 211 3.6e-14 2
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 214 4.8e-14 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 214 4.8e-14 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 214 4.9e-14 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 219 8.3e-14 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 208 1.9e-13 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 208 2.0e-13 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 184 2.1e-13 1
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 208 2.3e-13 1
UNIPROTKB|D6REZ6 - symbol:RBM47 "RNA-binding protein 47" ... 182 3.5e-13 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 199 3.9e-13 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 205 4.4e-13 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 172 5.0e-13 2
DICTYBASE|DDB_G0279639 - symbol:DDB_G0279639 "RNA-binding... 186 7.3e-13 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 202 8.6e-13 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 202 8.6e-13 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 202 8.9e-13 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 202 9.1e-13 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 202 1.0e-12 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 194 1.2e-12 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 199 1.8e-12 1
WARNING: Descriptions of 914 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 797 (285.6 bits), Expect = 6.7e-87, Sum P(3) = 6.7e-87
Identities = 160/328 (48%), Positives = 225/328 (68%)
Query: 130 TLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
T++ E E + + +R+ +KE EIF+G LD+ A++ED++KVF +GEV EVR+ KN T
Sbjct: 193 TVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTK 252
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
++KG AF++FA E AKRA+ E+K+P+I GK+CG S+DNDTLFVGNIC WT EA+++
Sbjct: 253 KSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALRE 312
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
KLK YGVE +++I LV D + ++RG+AF+ FS DAM A+KRL K DV+FG E+
Sbjct: 313 KLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFG-VEKPA 371
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
KV+F + + + EIMA VKT+F+DG+ P W E ++RD +K YG + ++ LARNM +A+R
Sbjct: 372 KVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARR 431
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
KD+GF+ F THEAAV+C INN E +G K K+RARLS P+ K A KG S
Sbjct: 432 KDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQK--AGKGRQS------ 483
Query: 430 HGSSRTFSRYGRGSGRAGHHFNRANFQR 457
SR+ R G+GR+G R++F R
Sbjct: 484 ---SRSDQRSRHGAGRSG----RSSFAR 504
Score = 59 (25.8 bits), Expect = 6.7e-87, Sum P(3) = 6.7e-87
Identities = 34/110 (30%), Positives = 47/110 (42%)
Query: 526 DGPDRGYGEHHSYRRQPFSQGE-DFDRPFI----GRQVDDPYFYDD---RAH----GVKR 573
D P RG G Y P S + RPF+ + + P Y + RA+ G KR
Sbjct: 627 DYPPRGSG----YSDLPRSSSRSEIRRPFVDDLYSPRFERPPSYSEGRPRAYEPLPGSKR 682
Query: 574 SFHVMDH-EPDY--MGPRRFRPRLDYNDPVIPF-HGSHHHDNVGACSNHY 619
+ +D P Y + R RPRLDY+ V P +G + D + S Y
Sbjct: 683 PYAALDDLPPRYADVDVRHSRPRLDYD--VGPSQYGESYGDRIPRSSLGY 730
Score = 46 (21.3 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 583 DYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSD 621
D + P R RP + Y+ + P + D+ + YSD
Sbjct: 599 DELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSD 637
Score = 45 (20.9 bits), Expect = 6.7e-87, Sum P(3) = 6.7e-87
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 2 EVAKFSEDKVSNYDNKERLGDSSKQKEPALVEVAKHNDII 41
E+ +ED S D+ + + K E VE +H+D++
Sbjct: 166 EIGDGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVL 205
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 371 (135.7 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 104/347 (29%), Positives = 171/347 (49%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGXXXXXXXXXXXXXXXXXXXXTLEDE 134
++EED +G E + EDYGD G T +D+
Sbjct: 36 EEEEDDDDDDVGNQNAEERE----VEDYGDTKG-GDMEDVQEEIAEDDDNHIDIETADDD 90
Query: 135 RRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN 185
+ + I + + K H E+FIGGL RD +ED+R + E IGE+ EVRL K+
Sbjct: 91 EKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKD 150
Query: 186 FSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE 245
+ +KGYAFV F K+ A++A+ E+ + GK + SE + LF+GNI WT++
Sbjct: 151 RDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTED 210
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
++ ++D G GVENI L+ D + +RGFAFV++ + +A A Y R + D F
Sbjct: 211 EFRKVIEDVG-PGVENIELIKDPTNTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLE 267
Query: 306 ERTVKVAFAEPLREPDPEIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
V +A+P P+ A VK +++ +P + Q+++ + +G+V +IV
Sbjct: 268 GNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK 327
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
KR D+GF+ ++ +A + A+ + E + N + L L+ P
Sbjct: 328 G-GKR-DFGFVHYAERSSA---LKAVKDTERYEVNGQ-PLEVVLAKP 368
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 331 (121.6 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 93/272 (34%), Positives = 143/272 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 327 (120.2 bits), Expect = 7.9e-27, P = 7.9e-27
Identities = 92/272 (33%), Positives = 143/272 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 327 (120.2 bits), Expect = 7.9e-27, P = 7.9e-27
Identities = 92/272 (33%), Positives = 143/272 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 324 (119.1 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 91/270 (33%), Positives = 143/270 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ F+ E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFTNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 305 (112.4 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 80/255 (31%), Positives = 131/255 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 195 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 253
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 254 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 310
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 311 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 362
Query: 390 INNKEFSDGNSKVKL 404
+N KE ++ L
Sbjct: 363 MNGKEIEGEEIEIVL 377
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 303 (111.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 83/267 (31%), Positives = 141/267 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 322 (118.4 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 92/270 (34%), Positives = 142/270 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ FS E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 322 (118.4 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 95/283 (33%), Positives = 147/283 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+N++ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQEAKDAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ FS E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 432
+N K DG+ + L+ P+ K V+ G G GS
Sbjct: 286 LNGKML-DGSP---IEVTLAKPVDKDSYVRYTRGTG---GRGS 321
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 322 (118.4 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 91/270 (33%), Positives = 143/270 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ F+ E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFTNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 319 (117.4 bits), Expect = 6.4e-26, P = 6.4e-26
Identities = 94/282 (33%), Positives = 144/282 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+ K+ AK A+ +
Sbjct: 57 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAKNAMKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + MA VK
Sbjct: 175 KAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E A+ +
Sbjct: 232 ILYVRNLMLPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
NA+N K DG+ + L+ P+ K V+ G R G
Sbjct: 284 NALNGKVI-DGSP---IEVTLAKPVDKDSYVRYTRGTGGRGG 321
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 319 (117.4 bits), Expect = 7.8e-26, P = 7.8e-26
Identities = 96/308 (31%), Positives = 149/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 162 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 221
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 222 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 280
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 281 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 337
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 338 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 389
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 390 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 448
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 449 -GRGGYGY 455
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 316 (116.3 bits), Expect = 9.8e-26, P = 9.8e-26
Identities = 89/270 (32%), Positives = 144/270 (53%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + + R K +DY F+ F+ E AV + A
Sbjct: 232 ILYVRNLMLSTTEETIE---KEFNNIKQGAVER---VKKIRDYAFVHFNKREDAVHAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 317 (116.6 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 98/345 (28%), Positives = 162/345 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGS 443
+N KE ++ L + QA + S + H R GRG
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Query: 444 GRAGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
GR G+ + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 454 GRGGYGYP-PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 317 (116.6 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 98/345 (28%), Positives = 162/345 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGS 443
+N KE ++ L + QA + S + H R GRG
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Query: 444 GRAGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
GR G+ + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 454 GRGGYGYP-PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 317 (116.6 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 98/345 (28%), Positives = 162/345 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGS 443
+N KE ++ L + QA + S + H R GRG
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 453
Query: 444 GRAGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
GR G+ + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 454 GRGGYGYP-PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 497
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 313 (115.2 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 359
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 360 -GRGGYGY 366
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 313 (115.2 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 359
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 360 -GRGGYGY 366
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 314 (115.6 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 91/270 (33%), Positives = 141/270 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 50 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 108
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 109 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 167
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 168 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHG---IAVDWAEPEVEVDEDTMSSVK 224
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ FS E AV + A
Sbjct: 225 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKA 278
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 279 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 304
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 314 (115.6 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 91/270 (33%), Positives = 141/270 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHG---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I K + ++ + R K +DY F+ FS E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIE---KEFNNIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 313 (115.2 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 97/345 (28%), Positives = 162/345 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGS 443
+N KE ++ L + QA + S + H R GRG
Sbjct: 356 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGG 415
Query: 444 GRAGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
GR G+ + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 416 GRGGYGYP-PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 459
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 312 (114.9 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 449
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 450 -GRGGYGY 456
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 304 (112.1 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 89/294 (30%), Positives = 147/294 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
+N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 51 (23.0 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 414 KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR 445
+T +G GG+ G G +SRY G G+
Sbjct: 391 RTPGPRGSYLGGYSAGRG---IYSRYHEGKGK 419
Score = 48 (22.0 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 434 RTFSRYGRGSGRAGHHFNRANFQRGR--GFYQHGRNHSSR 471
+T S GRG G AG NR RG G Y GR SR
Sbjct: 376 KTGSIRGRGRGAAG---NRTPGPRGSYLGGYSAGRGIYSR 412
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 313 (115.2 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 449
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 450 -GRGGYGY 456
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 312 (114.9 bits), Expect = 4.9e-25, P = 4.9e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 449
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 450 -GRGGYGY 456
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 312 (114.9 bits), Expect = 5.0e-25, P = 5.0e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 167 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 226
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 227 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 285
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 286 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 342
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 343 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 394
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 395 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 453
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 454 -GRGGYGY 460
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 312 (114.9 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 96/308 (31%), Positives = 150/308 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 238 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 296
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 353
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 354 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-G--HGSSRTFSRYGRG 442
+N K+ N ++ + + QA K M + G H T R GRG
Sbjct: 406 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGR-GRG 464
Query: 443 SGRAGHHF 450
GR G+ +
Sbjct: 465 -GRGGYGY 471
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 301 (111.0 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 88/294 (29%), Positives = 147/294 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ + +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEETIK---RSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
+N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
Score = 51 (23.0 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 414 KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR 445
+T +G GG+ G G +SRY G G+
Sbjct: 391 RTPGPRGSYLGGYSAGRG---IYSRYHEGKGK 419
Score = 48 (22.0 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 434 RTFSRYGRGSGRAGHHFNRANFQRGR--GFYQHGRNHSSR 471
+T S GRG G AG NR RG G Y GR SR
Sbjct: 376 KTGSIRGRGRGAAG---NRTPGPRGSYLGGYSAGRGIYSR 412
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 305 (112.4 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 310 (114.2 bits), Expect = 8.6e-25, P = 8.6e-25
Identities = 97/343 (28%), Positives = 160/343 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRTFSRY-GRGSGR 445
+N KE ++ L + QA + S + H R GRG G
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGG 453
Query: 446 AGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
G + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 454 RGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 496
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 306 (112.8 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 82/270 (30%), Positives = 135/270 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N KE ++ L + QA +
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAAR 423
Score = 45 (20.9 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 528 PDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYF--YDDRAHGVKRSFHVMDHEPDYM 585
P RG G Y + ED+ + G D Y Y+DR G R P +
Sbjct: 445 PIRGRGRGGXYPPDYYGY-EDYYDDYYGYDYHD-YRGGYEDRGRGGGRGGRGAPPPPRPL 502
Query: 586 GPRR 589
GP R
Sbjct: 503 GPPR 506
Score = 43 (20.2 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 424 GGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 460
GG R G G+ G G G A QRGRG
Sbjct: 487 GGGRGGRGAPPPPRPLGPPRGSRGGRGGPAQQQRGRG 523
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 307 (113.1 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 305 (112.4 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 305 (112.4 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 314 (115.6 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 83/270 (30%), Positives = 136/270 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F +K+ A+ A+
Sbjct: 194 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 253
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 254 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDD 312
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 313 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 369
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV +N
Sbjct: 370 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNE 421
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N KE ++ L + QA +
Sbjct: 422 MNGKEIEGEEIEIVLAKPPDKKRKERQAAR 451
Score = 38 (18.4 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 580 HEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYH 624
+ PDY G DY D ++G +HD G Y D Y+
Sbjct: 487 YPPDYYGYE------DYYDD---YYGYDYHDYRGG----YEDPYY 518
Score = 37 (18.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
PM + +GG G + G +R RG G G
Sbjct: 563 PMGPPRGARGGRGGPAQQQRGRGARGARGNRG-GNVG 598
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 308 (113.5 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 87/278 (31%), Positives = 146/278 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRE 132
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 249 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNS 302
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 303 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 336
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 308 (113.5 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 87/278 (31%), Positives = 146/278 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRE 132
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 249 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNS 302
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 303 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 336
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 308 (113.5 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 97/343 (28%), Positives = 159/343 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRTFSRY-GRGSGR 445
+N KE ++ L + QA + S + H R GRG G
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGG 453
Query: 446 AGHHFNRANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
G + ++ +Y +G ++ G E Y +D+ Y
Sbjct: 454 RGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 496
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 305 (112.4 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 305 (112.4 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 305 (112.4 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 305 (112.4 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 305 (112.4 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 87/278 (31%), Positives = 145/278 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 305 (112.4 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 87/278 (31%), Positives = 145/278 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 303 (111.7 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 90/277 (32%), Positives = 140/277 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 303 (111.7 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 83/267 (31%), Positives = 141/267 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 92
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 208
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 209 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 262
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 263 LNGTEL-EGSC---LEVTLAKPVDKEQ 285
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 303 (111.7 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 83/267 (31%), Positives = 141/267 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 303 (111.7 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 87/278 (31%), Positives = 144/278 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F+T E A+ +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KVFGQFNPGCVER---VKKIRDYAFVHFTTREDAIHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 301 LNGVEL-EGSC---LEVTLAKPVDKEQYTRYQKAAKGG 334
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 304 (112.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 90/307 (29%), Positives = 149/307 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ FE+ G + ++RL + + N+GYAF+ F KE A+ A+
Sbjct: 227 EIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKL 286
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 287 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 345
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 346 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVK 402
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G++ R+ K KDY F+ F+ + AV +
Sbjct: 403 VLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKALTE 454
Query: 390 INNKEFSDGNSKVKLRA----RLSNPMPKTQAVKGGMSGGFRI-GHGSSRTFSR-YGRGS 443
+N KE + ++ + + QA K M + G +R GRG+
Sbjct: 455 MNGKELEGEHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYYGPPQMPPPARGRGRGA 514
Query: 444 GRAGHHF 450
R G+ +
Sbjct: 515 SRGGYSY 521
Score = 43 (20.2 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 427 RIGHGSSRTFSRYGRGSGRAGHHFNRANF-QRGRGFYQHGRNHSSRMG 473
R G GS+R + RG G + RA F QRG G + R G
Sbjct: 563 RGGRGSARGGTSPARGRGASAPR-GRAGFPQRGGAGAGPGASRGLRGG 609
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 299 (110.3 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 81/269 (30%), Positives = 141/269 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 83 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 141
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N + G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 142 LNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAAD 200
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 201 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ---IAVDWAEPEIDVDEDVMETVK 257
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K +DY F+ F++ + AV +
Sbjct: 258 ILYVRNLMIETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVAM 309
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
+ +N E +G+ ++ L+ P+ K Q
Sbjct: 310 DNLNGTEI-EGS---RIEVTLAKPVDKEQ 334
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 297 (109.6 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 78/245 (31%), Positives = 128/245 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 283 KKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 339
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 340 VLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAE 391
Query: 390 INNKE 394
++ K+
Sbjct: 392 LHGKD 396
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 296 (109.3 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 83/250 (33%), Positives = 128/250 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ TV+ +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVE--WADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI-- 387
+F+ + E + +G + R+ K KDY FI F + AV I
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKVIIL 390
Query: 388 NAINNKEFSD 397
N+K D
Sbjct: 391 QLENSKNLKD 400
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 281 (104.0 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 91/303 (30%), Positives = 150/303 (49%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL- 209
HEI++G + D ++ + +FE+ G++ ++RL + + ++GYAFV + NKE A A
Sbjct: 200 HEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAK 259
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
T + + GK S N LF+GNI T +K+ I ++LK + EGV ++ + S
Sbjct: 260 TYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPD 318
Query: 270 HEGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPLREPDPEIMAH 327
+E + +RGF FV F H A +++ + + P V V +AE EPD + M+
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKI---RPFNADVYVDWAEHQEEPDEDTMSK 375
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++ + K Y + R+ K KDY FI F+ + + +
Sbjct: 376 VKVLYIRNIKEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAM 427
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG-GFR-IGHGSSRTFSRYG-RGSG 444
N KE +G + A L+ P P+ + K M G GF G G+ R G RG G
Sbjct: 428 EEWNGKEL-EGTV---VEASLAKP-PQEKKKKPVMRGRGFGGAGGGAGNHGQRGGQRGGG 482
Query: 445 RAG 447
+ G
Sbjct: 483 QWG 485
Score = 56 (24.8 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 417 AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN-RANFQRGRGF 461
A GG GG+ G G+ F YG G R G + R G GF
Sbjct: 520 AYGGGYGGGYG-GPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGF 564
Score = 49 (22.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 439 YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY---DFDNRY 483
+G G AG+H R QRG G Q G N GP Y F+N Y
Sbjct: 462 FGGAGGGAGNHGQRGG-QRGGG--QWGGN----AGPGGYYPNHFNNGY 502
Score = 48 (22.0 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 25/68 (36%), Positives = 28/68 (41%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYD 478
+GGM G R G G F G GR G AN +RGRG R R GP
Sbjct: 547 RGGMRGSPRGGMGGGGGFR--GGPPGRGG----MAN-RRGRG----KRPGDGRGGPASKR 595
Query: 479 FDNRYTEF 486
DN +F
Sbjct: 596 -DNGKPDF 602
Score = 39 (18.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
GG GG +G+G+ YG G G G + + + G G ++ G S R G
Sbjct: 509 GGGYGG-DMGYGAYG--GGYGGGYGGPGAYGDFGAY--GGGGFRGGMRGSPRGG 557
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 289 (106.8 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 85/267 (31%), Positives = 133/267 (49%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE+ G + E RL FS N+GYAFV + +E A+RA+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFS-GENRGYAFVMYTTREKAQRAIQL 104
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G+I KE I++++ EGV ++ +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 163
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAFV + H AMA K + ++GH T++V +AEP +E D E M V+
Sbjct: 164 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVR 220
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K DY FI F E A+ +
Sbjct: 221 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTAL 272
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPK 414
++N K DG+ + L+ P K
Sbjct: 273 ESMNGKVI-DGSP---IEVTLAKPASK 295
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 287 (106.1 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 88/274 (32%), Positives = 139/274 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + R+ ++++ +FER G++ E+RL FS N+G+AFV + KE A+ A+
Sbjct: 62 EVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEFS-GENRGFAFVMYTTKEDAQLAIKI 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I KE I +++K EGV ++ + D
Sbjct: 121 LNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+RGFAFV + H A A +RL P F R V+V +A P +E D E M VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLL-PGT-FQLWGRAVQVDWACPEKEVDAETMRRVKV 237
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E+ I+ + + R+V K +DY F+ F E AVA ++ +
Sbjct: 238 LYVRNLMISTTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIM 291
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
N K DG S + L+ P+ K K ++G
Sbjct: 292 NGKCI-DGAS---IEVTLAKPVNKESTWKQHLNG 321
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 291 (107.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 81/272 (29%), Positives = 139/272 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKNPVICGKRCGTAP-SEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD---IIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N KE N +V L S+ K + ++
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILR 422
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 280 (103.6 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 74/282 (26%), Positives = 139/282 (49%)
Query: 131 LEDERRELNAIA-KDRKIKKEH-----------EIFIGGLDRDATQEDVRKVFERIGEVI 178
+E+E E +A+A ++ + KK H E+++GG+ DAT+ D++ IGEV
Sbjct: 60 VEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVT 119
Query: 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNI 238
EVR+ + + KGYAFV F +K+ A A+ + N GKR + ++ LF+GN+
Sbjct: 120 EVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNV 179
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
W + IK+ G GV+ + L + Q+ G +RGFAF+ + H A A Y + +
Sbjct: 180 PRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNH--ACAEYSKQKMS 236
Query: 299 DVVFGHPERTVKVAFAEPLREPDPEIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
+ F + V++AE + A VK +++ +P + +++ + +G +++
Sbjct: 237 NPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILK 296
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399
+V+ + YGF+ ++ + + + E DG+
Sbjct: 297 VVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEI-DGH 337
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 262 (97.3 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 84/262 (32%), Positives = 131/262 (50%)
Query: 164 QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRC 222
++++ +FER G++ E+RL FS N+G+AFV + KE A+ A+ + N I G+
Sbjct: 3 EDELVPLFERAGKIYELRLMMEFS-GENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
G S DN LF+G I KE I +++K EGV ++ + D +RGFAFV +
Sbjct: 62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFAFVEY 120
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 342
H A A +RL P F R V+V +A P +E D E M VK +++ + E
Sbjct: 121 ESHRAAAMARRRLL-PGT-FQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTE 178
Query: 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402
+ I+ + + R+V K +DY F+ F E AVA ++ +N K DG S
Sbjct: 179 DTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIMNGKCI-DGAS-- 229
Query: 403 KLRARLSNPMPKTQAVKGGMSG 424
+ L+ P+ K K ++G
Sbjct: 230 -IEVTLAKPVNKESTWKQHLNG 250
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 231 (86.4 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 56/145 (38%), Positives = 85/145 (58%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL 295
+ +RGFAFV + H A A ++L
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKL 199
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 220 (82.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 51/145 (35%), Positives = 83/145 (57%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL 295
+ +RGFAFV + H A A ++L
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKL 214
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 244 (91.0 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 69/265 (26%), Positives = 128/265 (48%)
Query: 137 ELNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
E+ A+ + H +++G LD T+ + ++F IG+V +R+ ++ T R+ GY
Sbjct: 26 EVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE---AIKQKL 251
A+V + + H +RAL E+ +I GK C S+ + L N + K AI K
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 145
Query: 252 KDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
NI Q E G+S+G+ FV + A A K + ++ + V
Sbjct: 146 LHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN--GMLLNDKKVFVG 203
Query: 311 VAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ R+ E+ A+ +++ + P ++ + R + +G++ L+R+ S K
Sbjct: 204 HHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKS 262
Query: 370 KDYGFIDFSTHEAAVACINAINNKE 394
+ +GF++FSTHE+A A + +N+KE
Sbjct: 263 RGFGFVNFSTHESAQAAVEEMNDKE 287
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 234 (87.4 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 97/352 (27%), Positives = 156/352 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 38 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 92
Query: 202 KEHAKRALTEMKNPVICGKRCG---TAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV 256
+ A++ L E + I G+ T N F G +TW+ E+ L + Y
Sbjct: 93 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD-FRGGKNSTWSGESKTLVLSNLAYSA 151
Query: 257 ------EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
E E + Q++ G S+G+AF+ F+ DA A K ++ G R +
Sbjct: 152 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAI 207
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ P P+ KT+F+ G+ E +++ G IR + + T
Sbjct: 208 RLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETLKESFDGS---IRARIVTDRETGSS 263
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K +GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 264 KGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGG 316
Query: 430 HGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 317 FGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG--GGGGDHKPQGKKTKFE 365
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 237 (88.5 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 68/254 (26%), Positives = 119/254 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE---AIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + L N + K AI K NI Q
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 182
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIM 325
E G S+G+ FV + A A K + ++ E+ V V P ++ E+
Sbjct: 183 DENGNSKGYGFVHYETDEAASQAIKHVN--GMLLN--EKKVYVGHHIPKKDRQSKFDEMK 238
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
A+ +++ + P +++ R + YGDV LAR+ T K + +GF++F++HE A
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 386 CINAINNKEFSDGN 399
+ +N KEF N
Sbjct: 299 AVQELNEKEFHGQN 312
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 234 (87.4 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 97/352 (27%), Positives = 156/352 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 397 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 451
Query: 202 KEHAKRALTEMKNPVICGKRCG---TAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV 256
+ A++ L E + I G+ T N F G +TW+ E+ L + Y
Sbjct: 452 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD-FRGGKNSTWSGESKTLVLSNLAYSA 510
Query: 257 ------EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
E E + Q++ G S+G+AF+ F+ DA A K ++ G R +
Sbjct: 511 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAI 566
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ P P+ KT+F+ G+ E +++ G IR + + T
Sbjct: 567 RLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETLKESFDGS---IRARIVTDRETGSS 622
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K +GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 623 KGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGG 675
Query: 430 HGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 676 FGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG--GGGGDHKPQGKKTKFE 724
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 221 (82.9 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
E + +G + R+ K KDY F+ F AAV ++ +N KE
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 241
Query: 398 GNSKVKLRARLSNPMPKTQAVK-GGMSGGFR--IGHGSSRT---FSRYGRGSGRAGHHFN 451
++ L + QA + S + H R GRG GR G+ +
Sbjct: 242 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 301
Query: 452 RANFQRGRGFYQ--HGRNHSSRMGPTE---YDFDNRY 483
++ +Y +G ++ G E Y +D+ Y
Sbjct: 302 -PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 337
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 219 (82.2 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 77/264 (29%), Positives = 122/264 (46%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
+ RD ++++ +FE+ G V +RL + +N+GYAF+ F KE A+ + + I
Sbjct: 1 VQRDLYEDELVPLFEKAGPVWSLRLMMD-PLGQNRGYAFITFCGKEAAQGLVKPCDSCEI 59
Query: 218 C-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR- 275
GK G S N+T FVG TKE ++ K EG+ + ++ D Q + +
Sbjct: 60 RPGKVLGVCFSVANNT-FVGFTPKNKTKENFEEFSKV--TEGL--VGIILDHQPDDKKKN 114
Query: 276 -GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD 334
GF F+ + H A A L VV+G+ V V A+P+ EPDPE MA VK +F+
Sbjct: 115 WGFCFLEYEDHKSAAQARLWLMSGKVVWGN---VVTVERADPVEEPDPEGMAKVKVLFVR 171
Query: 335 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 394
+ E + +G++ R+ K DY F+ F EA V ++ +N KE
Sbjct: 172 NLATTVTEEILEKSFSQFGELERV--------KKLTDYAFVHFEDREA-VKAVDEMNGKE 222
Query: 395 FSDGNSKVKLRARLSNPMPKTQAV 418
++ L + QAV
Sbjct: 223 IEGEEIEIVLAMLPDRKRKEHQAV 246
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 223 (83.6 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 94/352 (26%), Positives = 155/352 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K +++ + L TQ+++++VFE + E+RL ++KG A+++F
Sbjct: 384 KDSKKERDARTLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKT 438
Query: 202 KEHAKRALTEMKNPVICGKRCG---TAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV 256
+ A++ E + I G+ T N + G +TW+ E+ L + Y
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD-YRGGKNSTWSGESKTLVLSNLSYSA 497
Query: 257 ------EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
E E + Q++ G S+G+AF+ F+ DA A K ++ G R +
Sbjct: 498 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAI 553
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ P P+ KT+F+ G+ E +++ G +R + + T
Sbjct: 554 RLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSS 609
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K +GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 610 KGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGG 662
Query: 430 HGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 663 FGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG---GGGDHKPQGKKTKFE 710
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 223 (83.6 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 94/352 (26%), Positives = 155/352 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K +++ + L TQ+++++VFE + E+RL ++KG A+++F
Sbjct: 385 KDSKKERDARTLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKT 439
Query: 202 KEHAKRALTEMKNPVICGKRCG---TAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV 256
+ A++ E + I G+ T N + G +TW+ E+ L + Y
Sbjct: 440 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD-YRGGKNSTWSGESKTLVLSNLSYSA 498
Query: 257 ------EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
E E + Q++ G S+G+AF+ F+ DA A K ++ G R +
Sbjct: 499 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAI 554
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ P P+ KT+F+ G+ E +++ G +R + + T
Sbjct: 555 RLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSS 610
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K +GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 611 KGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGG 663
Query: 430 HGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 664 FGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG---GGGDHKPQGKKTKFE 711
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 223 (83.6 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 94/352 (26%), Positives = 155/352 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K +++ + L TQ+++++VFE + E+RL ++KG A+++F
Sbjct: 386 KDSKKERDARTLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKT 440
Query: 202 KEHAKRALTEMKNPVICGKRCG---TAPSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV 256
+ A++ E + I G+ T N + G +TW+ E+ L + Y
Sbjct: 441 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD-YRGGKNSTWSGESKTLVLSNLSYSA 499
Query: 257 ------EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
E E + Q++ G S+G+AF+ F+ DA A K ++ G R +
Sbjct: 500 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAI 555
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
++ P P+ KT+F+ G+ E +++ G +R + + T
Sbjct: 556 RLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSS 611
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K +GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 612 KGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGG 664
Query: 430 HGSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 665 FGG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG---GGGDHKPQGKKTKFE 712
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 223 (83.6 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 89/329 (27%), Positives = 147/329 (44%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+K++ + L + T++++++VFE + +E+RL R+KG A+++F ++
Sbjct: 391 KKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEAD 445
Query: 205 AKRALTEMKNPVICGKRCGTA-PSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV----- 256
A++ L E + I G+ E +TW+ E+ L + Y
Sbjct: 446 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 505
Query: 257 -EGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
E E + Q+ G S+G+AF+ F+ DA A K ++ G RT+++
Sbjct: 506 QEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQ 561
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
P P+ KT+F+ G+ E +++ +G +R + + T K +GF
Sbjct: 562 GPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGF 617
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF++ E A A A+ + E DGN KV L PK + GG GG R G G R
Sbjct: 618 VDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGFGG-R 669
Query: 435 TFSRYGRGS--GRAGHHFN-RANFQRGRG 460
R GRG GR F R F+ GRG
Sbjct: 670 GGGRGGRGGFGGRGRGGFGGRGGFRGGRG 698
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 223 (83.6 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 89/329 (27%), Positives = 147/329 (44%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+K++ + L + T++++++VFE + +E+RL R+KG A+++F ++
Sbjct: 392 KKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEAD 446
Query: 205 AKRALTEMKNPVICGKRCGTA-PSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV----- 256
A++ L E + I G+ E +TW+ E+ L + Y
Sbjct: 447 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 506
Query: 257 -EGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
E E + Q+ G S+G+AF+ F+ DA A K ++ G RT+++
Sbjct: 507 QEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQ 562
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
P P+ KT+F+ G+ E +++ +G +R + + T K +GF
Sbjct: 563 GPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGF 618
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF++ E A A A+ + E DGN KV L PK + GG GG R G G R
Sbjct: 619 VDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGFGG-R 670
Query: 435 TFSRYGRGS--GRAGHHFN-RANFQRGRG 460
R GRG GR F R F+ GRG
Sbjct: 671 GGGRGGRGGFGGRGRGGFGGRGGFRGGRG 699
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 198 (74.8 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 62/248 (25%), Positives = 115/248 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T+ + YA+V F + + A+ AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K V NI + +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H A A K++ ++ G R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGM-LLNG---RKVFVGQFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKE 394
++ +N KE
Sbjct: 248 VDEMNGKE 255
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 220 (82.5 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 86/328 (26%), Positives = 148/328 (45%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+K++ + L + T++++++VFE + +E+RL ++KG A+++F ++
Sbjct: 388 KKVRAARTLLAKNLSFNITEDELKEVFE---DALEIRLVSQ--DGKSKGIAYIEFKSEAD 442
Query: 205 AKRALTEMKNPVICGKRCGTA-PSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV----- 256
A++ L E + I G+ E +TW+ E+ L + Y
Sbjct: 443 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 502
Query: 257 -EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
E E + Q++ G S+G+AF+ F+ DA A K ++ G RT+++
Sbjct: 503 QEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQ 558
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
P P+ KT+F+ G+ E +++ +G +R + + T K +GF
Sbjct: 559 GPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGF 614
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ-AVKGGMSGGFRIGHGSS 433
+DF++ E A A A+ + E DGN KV L + P + +GG GGF G G
Sbjct: 615 VDFNSEEDAKAAKEAMEDGEI-DGN-KVTLD--WAKPKGEGGFGGRGGGRGGFG-GRGGG 669
Query: 434 RTFSRYGRGS-GRAGHHFNRANFQRGRG 460
R R G G GR G R F+ GRG
Sbjct: 670 RGGGRGGFGGRGRGGFG-GRGGFRGGRG 696
Score = 139 (54.0 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 51/181 (28%), Positives = 79/181 (43%)
Query: 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366
RT+++ P P+ KT+F+ G+ E +++ +G +R + + T
Sbjct: 551 RTIRLELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRET 606
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGF 426
K +GF+DF++ E A A A+ + E DGN + L PK + GG GG
Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN-----KVTLDWAKPKGEGGFGGRGGG- 659
Query: 427 RIGHGSSRTFSRYGRGSGRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTE 485
R G G GRG GR G R F GRG ++ GR G ++ + T+
Sbjct: 660 RGGFGGRGG----GRGGGRGGFGGRGRGGFG-GRGGFRGGRGGGG--GGGDFKPQGKKTK 712
Query: 486 F 486
F
Sbjct: 713 F 713
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 219 (82.2 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 92/333 (27%), Positives = 152/333 (45%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 306 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 360
Query: 202 KEHAKRALTEMKNPVI--CGK-------RCG--TAPSEDNDTLFVGNICNTWTKEAIKQK 250
+ A++ L E + I G+ R G + S ++ TL + N+ + T+E +++
Sbjct: 361 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 420
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
E +I + + G S+G+AF+ F+ DA A K ++ G R ++
Sbjct: 421 F-----EKATHIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAIR 469
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ P P+ KT+F+ G+ E +++ G IR + + T K
Sbjct: 470 LELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSK 525
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGH 430
+GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 526 GFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGF 578
Query: 431 GSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 460
G R R GRG GR F R F+ GRG
Sbjct: 579 GG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 610
Score = 120 (47.3 bits), Expect = 0.00076, P = 0.00076
Identities = 65/280 (23%), Positives = 125/280 (44%)
Query: 153 IFIGGLDRDATQEDVRK----VFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+F+G L+ + + +++ +F + V++VR+ +R GY V F + E ++
Sbjct: 231 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRI----GVSRKFGY--VDFESAEDLEK 284
Query: 208 AL--TEMK---NPVICGKRCGTAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
AL T +K N + K G +D D TL N+ T++ +K+ +D VE
Sbjct: 285 ALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED-AVE--- 340
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
I LVS +G S+G A++ F DA + Q ++ + T + ++ R
Sbjct: 341 -IRLVSK---DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDY-----TGEKGQSQDHRGG 391
Query: 321 DPEIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
+ KT+ L + E +++ + I + +N + K K Y FI+F++
Sbjct: 392 KNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFAS 447
Query: 380 HEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
E A +N+ N +E +++L+ +P ++Q K
Sbjct: 448 FEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 487
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 219 (82.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 92/333 (27%), Positives = 152/333 (45%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 311 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 365
Query: 202 KEHAKRALTEMKNPVI--CGK-------RCG--TAPSEDNDTLFVGNICNTWTKEAIKQK 250
+ A++ L E + I G+ R G + S ++ TL + N+ + T+E +++
Sbjct: 366 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 425
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
E +I + + G S+G+AF+ F+ DA A K ++ G R ++
Sbjct: 426 F-----EKATHIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAIR 474
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ P P+ KT+F+ G+ E +++ G IR + + T K
Sbjct: 475 LELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSK 530
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGH 430
+GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 531 GFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGF 583
Query: 431 GSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 460
G R R GRG GR F R F+ GRG
Sbjct: 584 GG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 615
Score = 120 (47.3 bits), Expect = 0.00077, P = 0.00077
Identities = 65/280 (23%), Positives = 125/280 (44%)
Query: 153 IFIGGLDRDATQEDVRK----VFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+F+G L+ + + +++ +F + V++VR+ +R GY V F + E ++
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRI----GVSRKFGY--VDFESAEDLEK 289
Query: 208 AL--TEMK---NPVICGKRCGTAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
AL T +K N + K G +D D TL N+ T++ +K+ +D VE
Sbjct: 290 ALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED-AVE--- 345
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
I LVS +G S+G A++ F DA + Q ++ + T + ++ R
Sbjct: 346 -IRLVSK---DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDY-----TGEKGQSQDHRGG 396
Query: 321 DPEIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
+ KT+ L + E +++ + I + +N + K K Y FI+F++
Sbjct: 397 KNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFAS 452
Query: 380 HEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
E A +N+ N +E +++L+ +P ++Q K
Sbjct: 453 FEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 492
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 219 (82.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 92/333 (27%), Positives = 152/333 (45%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 311 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 365
Query: 202 KEHAKRALTEMKNPVI--CGK-------RCG--TAPSEDNDTLFVGNICNTWTKEAIKQK 250
+ A++ L E + I G+ R G + S ++ TL + N+ + T+E +++
Sbjct: 366 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 425
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
E +I + + G S+G+AF+ F+ DA A K ++ G R ++
Sbjct: 426 F-----EKATHIKVPQN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAIR 474
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ P P+ KT+F+ G+ E +++ G IR + + T K
Sbjct: 475 LELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSK 530
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGH 430
+GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 531 GFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGF 583
Query: 431 GSSRTFSRYGRGS--GRAGHHFN-RANFQRGRG 460
G R R GRG GR F R F+ GRG
Sbjct: 584 GG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG 615
Score = 120 (47.3 bits), Expect = 0.00077, P = 0.00077
Identities = 65/280 (23%), Positives = 125/280 (44%)
Query: 153 IFIGGLDRDATQEDVRK----VFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+F+G L+ + + +++ +F + V++VR+ +R GY V F + E ++
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDVRI----GVSRKFGY--VDFESAEDLEK 289
Query: 208 AL--TEMK---NPVICGKRCGTAPSEDND--TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
AL T +K N + K G +D D TL N+ T++ +K+ +D VE
Sbjct: 290 ALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED-AVE--- 345
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
I LVS +G S+G A++ F DA + Q ++ + T + ++ R
Sbjct: 346 -IRLVSK---DGKSKGIAYIEFKTEADAEKTLEEKQGTEIDY-----TGEKGQSQDHRGG 396
Query: 321 DPEIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
+ KT+ L + E +++ + I + +N + K K Y FI+F++
Sbjct: 397 KNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFAS 452
Query: 380 HEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
E A +N+ N +E +++L+ +P ++Q K
Sbjct: 453 FEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 492
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 218 (81.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 88/329 (26%), Positives = 146/329 (44%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+K++ + L + T++++++VFE + +E+RL R+KG A+++F ++
Sbjct: 245 KKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEAD 299
Query: 205 AKRALTEMKNPVICGKRCGTA-PSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV----- 256
A++ L E + I G+ E +TW+ E+ L + Y
Sbjct: 300 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 359
Query: 257 -EGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
E E + Q+ G S+G+AF+ F+ DA A K ++ G RT+++
Sbjct: 360 QEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQ 415
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
P P+ KT+F+ G+ E +++ +G +R + + T K +GF
Sbjct: 416 GPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGF 471
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF++ E A A+ + E DGN KV L PK + GG GG R G G R
Sbjct: 472 VDFNSEEDAKTAKEAMEDGEI-DGN-KVTL----DWAKPKGKGGFGGRGGG-RGGFGG-R 523
Query: 435 TFSRYGRGS--GRAGHHFN-RANFQRGRG 460
R GRG GR F R F+ GRG
Sbjct: 524 GGGRGGRGGFGGRGRGGFGGRGGFRGGRG 552
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 218 (81.8 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 92/351 (26%), Positives = 155/351 (44%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 389 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 443
Query: 202 KEHAKRALTEMKNPVICGKRCGTA-PSEDNDTL-FVGNICNTWTKEAIKQKLKD--YGV- 256
+ A++ E + I G+ E + + G +TW+ E+ L + Y
Sbjct: 444 EADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSAT 503
Query: 257 -----EGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
E E + Q++ G S+G+AF+ F+ DA A K ++ G R ++
Sbjct: 504 EETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAIR 559
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ P P+ KT+F+ G+ E +++ G +R + + T K
Sbjct: 560 LELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSK 615
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGH 430
+GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 616 GFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGF 668
Query: 431 GSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R G+G GR F R F+ GRG G +H + T+++
Sbjct: 669 GG-RGGGRRGQGGFGGRGRGGFGGRGGFRGGRG---GGGDHKPQGKKTKFE 715
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 211 (79.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 55/206 (26%), Positives = 103/206 (50%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAF 196
N+I+K ++ +EIF GG+++ +E++ ++F + V+E+RL K+ T +KG+ F
Sbjct: 81 NSISKSQR-NANNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGF 139
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGV 256
V F ++ + + ++ I GK SE+ LF+GN+ +KE +
Sbjct: 140 VLFNDRSMCRNVIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEK-T 198
Query: 257 EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
EG+E+I+ + +RGFAF+ + H A A + L V G T+ V +++P
Sbjct: 199 EGIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDP 258
Query: 317 ---LREP--DPEIMAHVKTVFLDGVP 337
+P DP +K +++ +P
Sbjct: 259 DPTTLDPQNDPLENKEIKAIYIRNLP 284
Score = 47 (21.6 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414
+++ +KR DY F+ T E A + K + N KV L + P+ K
Sbjct: 353 SLNNSKR-DYAFVHLKTRELAEEILRIHEEKPINI-NGKV-LSLSFAKPIDK 401
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 214 (80.4 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 92/350 (26%), Positives = 157/350 (44%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
++ + ++ +++K + +F+ L T+++++ VFE +EVRL N +K
Sbjct: 351 EKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSK 406
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGKRC-----GTAPSEDND---------TLFVGNI 238
G A+++F + A++AL E + + G+ G +++ TL V N+
Sbjct: 407 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNL 466
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
++E +++ K +I + + ++G +G+AFV F DA A
Sbjct: 467 SYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCNNT 519
Query: 299 DVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
++ G R +++ F+ P + KT+F+ G+ E +R+ +G
Sbjct: 520 EIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI 575
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV L + P
Sbjct: 576 SA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVTLD--FAKPKG 628
Query: 414 KTQAVKGGMSGGF--RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQRGRG 460
+ Q GG GGF R G G R F GRG GR G F+ RG
Sbjct: 629 EFQR-GGGFGGGFGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRGSRG 674
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 214 (80.4 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 92/350 (26%), Positives = 157/350 (44%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
++ + ++ +++K + +F+ L T+++++ VFE +EVRL N +K
Sbjct: 353 EKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSK 408
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGKRC-----GTAPSEDND---------TLFVGNI 238
G A+++F + A++AL E + + G+ G +++ TL V N+
Sbjct: 409 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNL 468
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
++E +++ K +I + + ++G +G+AFV F DA A
Sbjct: 469 SYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 299 DVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
++ G R +++ F+ P + KT+F+ G+ E +R+ +G
Sbjct: 522 EIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI 577
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV L + P
Sbjct: 578 SA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVTLD--FAKPKG 630
Query: 414 KTQAVKGGMSGGF--RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQRGRG 460
+ Q GG GGF R G G R F GRG GR G F+ RG
Sbjct: 631 EFQR-GGGFGGGFGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRGSRG 676
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 214 (80.4 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 93/353 (26%), Positives = 158/353 (44%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
++ + ++ +++K + +F+ L T+++++ VFE +EVRL N +K
Sbjct: 353 EKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSK 408
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGKRC-----GTAPSEDND---------TLFVGNI 238
G A+++F + A++AL E + + G+ G +++ TL V N+
Sbjct: 409 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNL 468
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
++E +++ K +I + + ++G +G+AFV F DA A
Sbjct: 469 SYAASEETLQELFKK-----ATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 299 DVVFGHPERTVKVAFAEPLREPDPE-----IMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
++ G R +++ F+ P + KT+F+ G+ E +R+ +G
Sbjct: 522 EIE-G---RAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSI 577
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
RIV R+ T K +GF+DFS+ E A A A+ + E DGN KV L + P
Sbjct: 578 SA-RIVTDRD--TGSSKGFGFVDFSSPEDAKAAKEAMEDGEI-DGN-KVTLD--FAKPKG 630
Query: 414 KTQAVKGGMSGGF-----RIGHGSSRT-FSRYGRGSGRAGHHFNRANFQRGRG 460
+ Q GG GGF R G G R F GRG GR G F+ GRG
Sbjct: 631 EFQR-GGGFGGGFGGRGGRGGRGGGRGGFG--GRGGGR-GFGGRGGGFRGGRG 679
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 219 (82.2 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 93/351 (26%), Positives = 151/351 (43%)
Query: 143 KDRKIKKEHEIFIG-GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
KD K ++ + L TQ+++++VFE + +E+RL ++KG A+++F
Sbjct: 394 KDSKKDRDARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSK--DGKSKGIAYIEFKT 448
Query: 202 KEHAKRALTEMKNPVICGKRCGTA-PSEDNDTL-FVGNICNTWTKEAIKQKLKDYGVEGV 259
+ A++ L E + I G+ E + G +TW+ E+ L +
Sbjct: 449 EADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSAT 508
Query: 260 ENI--NLVSDIQH-------EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
E + H G S+G+AF+ F+ DA A K ++ G R ++
Sbjct: 509 EETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE-G---RAIR 564
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ P P+ KT+F+ G+ E +++ G IR + + T K
Sbjct: 565 LELQGPRGSPNARSQPS-KTLFVKGLSEDTTEETLKESFDGS---IRARIVTDRETGSSK 620
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGH 430
+GF+DF++ E A A A+ + E DGN KV L PK + GG GG R G
Sbjct: 621 GFGFVDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGF 673
Query: 431 GSSRTFSRYGRGS--GRAGHHFN-RANFQRGRGFYQHGRNHSSRMGPTEYD 478
G R R GRG GR F R F+ GRG G +H + T+++
Sbjct: 674 GG-RGGGRGGRGGFGGRGRGGFGGRGGFRGGRG---GGGDHKPQGKKTKFE 720
Score = 39 (18.8 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 5 KFSEDKVSNYDNKERLGDSSKQKEPALVEVA 35
K D+ D++E D ++ EPA+ + A
Sbjct: 142 KEDSDEEDEDDSEEEDDDDEEEDEPAVRKAA 172
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 208 (78.3 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 68/254 (26%), Positives = 117/254 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +R+ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFSDGNS 400
+ +N KE S G S
Sbjct: 248 VEEMNGKEMS-GKS 260
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 208 (78.3 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 68/254 (26%), Positives = 117/254 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +R+ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFSDGNS 400
+ +N KE S G S
Sbjct: 248 VEEMNGKEMS-GKS 260
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 184 (69.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 63/221 (28%), Positives = 101/221 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 3 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 49
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 50 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 108
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 109 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 164
Query: 411 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 448
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 165 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 203
Score = 151 (58.2 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 40/136 (29%), Positives = 68/136 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E + + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 212 ----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 266
+ VI KR +++ +FVG + +E I++ +G VE+I L
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESIELPM 119
Query: 267 DIQHEGLSRGFAFVMF 282
D RGF F+ F
Sbjct: 120 D-NKTNKRRGFCFITF 134
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 76 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 135
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 136 EEEPVKKIM 144
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 208 (78.3 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 89/361 (24%), Positives = 161/361 (44%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
D+ R +++K + +F+ L TQ+D+R++F+ + +++R+ +T ++
Sbjct: 362 DKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFD---QAVDIRVPMG-NTGTSR 417
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGK-----------RCGT--APSEDNDTLFVGNIC 239
G A+++F + A++AL E + + G+ R G APS L V N+
Sbjct: 418 GIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASK-VLVVNNLA 476
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
+ ++++++ E +I + Q+ G +G+AFV F D+ A + D
Sbjct: 477 FSASEDSLQSVF-----EKAVSIRIP---QNNGRPKGYAFVEFENVEDSKEALENCNNTD 528
Query: 300 VVFGHPERTVKVAFAEPLREPDPEIMAH---VKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
+ G R++++ +++ RE + KT+F+ G+ + ++D G I
Sbjct: 529 IE-G---RSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFDG---AI 581
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
+A + T K +GF+DF + A A+++ E DGN + L PK +
Sbjct: 582 AARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEI-DGN-----KVTLDYAKPKGE 635
Query: 417 AVKGGMSGGFRIGHGSSRTFSRYG---RGSGRAGHHFNRANFQRGRGF-YQHGRNHSSRM 472
+GG GG R G G R R G RG G G F RG G ++ GR R
Sbjct: 636 GGRGGFGGG-RGGFGG-RGGGRGGFGGRGGGGRGGGFRGGRGGRGGGGGFRGGRGGGGRG 693
Query: 473 G 473
G
Sbjct: 694 G 694
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 182 (69.1 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 41/112 (36%), Positives = 66/112 (58%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ N I G+ G S DN LF+G I +E I +++ EGV ++
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDV 181
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 199 (75.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 62/250 (24%), Positives = 116/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T+ + YA+V F + + A+ AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K V NI + +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H A A K++ ++ G R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGM-LLNG---RKVFVGQFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 205 (77.2 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 64/282 (22%), Positives = 127/282 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F + +V+ VR+ ++ +TN + GY +V ++N + A++A+ ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 213 KNPVICGKRCG-TAPSEDNDT-------LFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK T S D+ LFV N+ + + + + G + + +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT--IVSCKV 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D H G SRG+ FV F A A ++L V + V + RE +
Sbjct: 166 ATD--HMGQSRGYGFVQFDTEDSAKNAIEKLNGK--VLNDKQIFVGPFLRKEERESAADK 221
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
M V++ + +++++ YG + V+ R+ K + +GF++F E A
Sbjct: 222 MKFTN-VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAA 279
Query: 385 ACINAINNKEFSDGNSKV-KLRARLSNPMPKTQAVKGGMSGG 425
+ A+N K+F D V K + + + ++ + G S G
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDG 321
Score = 131 (51.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 62/300 (20%), Positives = 118/300 (39%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD+ + + + F G ++ ++ + +++GY FV+F ++ AK A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 213 KNPVICGKRCGTAP---SEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
V+ K+ P E+ ++ ++V N+ T + +K YG +
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG--SIS 252
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHP----ERTVKV 311
+ ++ D +G SR F FV F DA A K+ + G ER +++
Sbjct: 253 SAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 310
Query: 312 AFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371
+ D +++ + + ++R+ +G + + R+ S K
Sbjct: 311 SRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS-KG 369
Query: 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHG 431
GF+ FS A +N +N K V L R K QA M F G G
Sbjct: 370 SGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 172 (65.6 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 56/194 (28%), Positives = 97/194 (50%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
D I + + + L ++ +Q+++R +F IGEV +L ++ + GY FV + N
Sbjct: 27 DELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPN 86
Query: 204 HAKRALTEMKNPVICGKRCGTA---PSEDN--DT-LFVGNICNTWTKEAIKQKLKDYGVE 257
A+RA++ + + K + PS D+ D L++ + T T++ +++ YG
Sbjct: 87 DAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYG-- 144
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVAFA 314
+ N ++ D Q GLSRG AF+ F +A A K L QKP G E+ TVK A A
Sbjct: 145 RIINSRVLVD-QASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPP---GAAEQMTVKFA-A 199
Query: 315 EPLREPDPEIMAHV 328
P + + +++ V
Sbjct: 200 SPNQVKNTQVIPQV 213
Score = 69 (29.3 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+G V + + R+ +T K K +GF+ + +E A I ++N D +V + S+
Sbjct: 281 FGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSKSH 339
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 186 (70.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 88/318 (27%), Positives = 138/318 (43%)
Query: 168 RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--TEMKNPVICGKRCGTA 225
+++ E + EV +V H K +A V+ N AK L +++KN C
Sbjct: 341 KELEEALNEVGKV--HTITYEGSKKDFAIVQMENHTIAKEKLNNSKLKN---CTLSITDI 395
Query: 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285
P D+ LFVGN+ N KE +K+ + +G ++ I L+ + + G ++G+AF+ +
Sbjct: 396 PLADS-LLFVGNLGNDVGKEQLKKMFEKHGT--IDRIILIKN-RRTGENKGYAFIDYRTK 451
Query: 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
+ A A L +VF RT++V +AE E M H KT+F+D +P + + I
Sbjct: 452 LQASTAKSSLGS--IVFNR--RTLRVDWAENCNTM--ESM-HSKTIFVDRLPRSFADVPI 504
Query: 346 -RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
R +G + + N R + FID++ E A +N K+ K+
Sbjct: 505 LRKVFSPFGKIKDCNVVPNYYGQPR-GFAFIDYNNVEDAEKAQRMMNEKDLKG----YKI 559
Query: 405 RARLSNPM-PKTQAVK--GGMSGGFRIGHGSSRTFSRYGRGSGRAG------HHFNRAN- 454
R +NP P VK SG SS F GRG G G HF +
Sbjct: 560 RVNFANPSKPGHSLVKPPSQQSGRSHESVPSSSPFRGRGRGRGSMGVPPPNSQHFGIGSV 619
Query: 455 ---FQRGRGFYQHGRNHS 469
F+ GRG + +HS
Sbjct: 620 GGGFRGGRGVGGYPGDHS 637
Score = 169 (64.5 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+G L D +E ++K+FE+ G + + L KN T NKGYAF+ + K A A + +
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 213 KNPVI--------CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGVEGVENIN 263
+ V + C T S + T+FV + ++ I +K+ +G +++ N
Sbjct: 462 GSIVFNRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGK--IKDCN 519
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+V + + G RGFAF+ ++ DA A + + + D+ G+ ++V FA P
Sbjct: 520 VVPN--YYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLK-GYK---IRVNFANP 566
Score = 137 (53.3 bits), Expect = 7.7e-08, Sum P(3) = 7.7e-08
Identities = 51/186 (27%), Positives = 90/186 (48%)
Query: 133 DERRELNAIAK-DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
D+ + +IA+ + KK I I GL+ T++++ + +G+V H
Sbjct: 308 DKTKIQQSIAEMEGSFKKIPSIKITGLNDSLTEKELEEALNEVGKV-----HTITYEGSK 362
Query: 192 KGYAFVKFANKEHAKRAL--TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
K +A V+ N AK L +++KN C P D+ LFVGN+ N KE +K+
Sbjct: 363 KDFAIVQMENHTIAKEKLNNSKLKN---CTLSITDIPLADS-LLFVGNLGNDVGKEQLKK 418
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
+ +G ++ I L+ + + G ++G+AF+ + + A A L +VF RT+
Sbjct: 419 MFEKHGT--IDRIILIKN-RRTGENKGYAFIDYRTKLQASTAKSSLGS--IVFNR--RTL 471
Query: 310 KVAFAE 315
+V +AE
Sbjct: 472 RVDWAE 477
Score = 69 (29.3 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGXXXXXXXXXXXXXXXXXXXXTLEDE 134
D+++DL +LLG + + + Y ED D + G T ++
Sbjct: 210 DEDQDLVEELLGSDDNNHNNQYSDDEDE-DVNNNGESKTSTSTSTTTSTTTTSTPTADEN 268
Query: 135 RRELNAIAKDRKI 147
+++LN++ D I
Sbjct: 269 KQDLNSLDVDSSI 281
Score = 46 (21.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 21/74 (28%), Positives = 26/74 (35%)
Query: 405 RARLSNPMPKTQAVK-GGMSGGFRIGHGSSR---TFSRYGRGSGRAGHHFNRANFQRGRG 460
R + P P +Q G + GGFR G G S +G GR G N
Sbjct: 601 RGSMGVPPPNSQHFGIGSVGGGFRGGRGVGGYPGDHSGIYQG-GRGGRGVGGVNGSGPIA 659
Query: 461 FYQHGRNHSSRMGP 474
+ G H GP
Sbjct: 660 MERGGPMHHQPYGP 673
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 202 (76.2 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 65/250 (26%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 202 (76.2 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 65/250 (26%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 202 (76.2 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R++++ +T R+ GYA V F E A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE---AIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K +I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F +A A ++K + +F + +R V V + R+ E+ A K
Sbjct: 133 DENGSKGYGFVHFETQEEAERA---IEKMNGMFLN-DRKVFVGRFKSRRDRQAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKA 247
Query: 387 INAINNKEFS 396
++ +N K+ +
Sbjct: 248 VDEMNGKDLN 257
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 202 (76.2 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 61/251 (24%), Positives = 122/251 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N E ++AL E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE---AIKQK-LKD-YGVEGVENINLVSD 267
+I G+ C S+ + +L N + K AI K L D + G + ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KILSCKVA 200
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI--- 324
+ G ++G+ FV F A AA + + ++ ++ V V RE ++
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVN--GMLLN--DKKVYVGHHVSRRERQSKVEAL 256
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
A+ V++ + E + D +G++ + L ++ + K + +GF++++ HE A
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQ 315
Query: 385 ACINAINNKEF 395
++ +N+KE+
Sbjct: 316 KAVDELNDKEY 326
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 202 (76.2 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 86/329 (26%), Positives = 146/329 (44%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+K++ + L + T++++++VFE + +E+RL ++KG A+++F ++
Sbjct: 389 KKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLVSQ--DGKSKGIAYIEFKSEAD 443
Query: 205 AKRALTEMKNPVICGKRCGTA-PSEDNDTLFVGNICNTWTKEAIKQKLKD--YGV--EGV 259
A++ L E + I G+ E +TW+ E+ L + Y E +
Sbjct: 444 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETL 503
Query: 260 ENI----NLVSDIQH-EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
E + + Q+ G +G+AF+ F+ DA A K ++ G RT+++
Sbjct: 504 EEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE-G---RTIRLELQ 559
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
P KT+F+ G+ E +++ +G +R + + T K +GF
Sbjct: 560 GSNSRSQPS-----KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGF 611
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF++ E A A A+ + E DGN KV L PK + GG GG R G G R
Sbjct: 612 VDFNSEEDAKAAKEAMEDGEI-DGN-KVTL----DWAKPKGEGGFGGRGGG-RGGFGG-R 663
Query: 435 TFSRYGRGS--GRAGHHFN-RANFQRGRG 460
R GRG GR F R F+ GRG
Sbjct: 664 GGGRGGRGGFGGRGRGGFGGRGGFRGGRG 692
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 67/253 (26%), Positives = 121/253 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQK-LKD-YGVEG-VENINLVS 266
++ G+ S+ + L VGNI +++I K L D + G + + +
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D +H G SRGF FV F H A A + ++ +R V V + RE + E+ A
Sbjct: 133 D-EH-G-SRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAELGA 185
Query: 327 HV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+++ +P E ++D +G ++ + + R+ S R +GF++F HE A
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEA 244
Query: 384 VACINAINNKEFS 396
+ +N KE S
Sbjct: 245 QKAVVHMNGKEVS 257
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 199 (75.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 64/250 (25%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ + K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 199 (75.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 68/273 (24%), Positives = 123/273 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F DA A + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQ-DA--ADRAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + + + + T K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKA 247
Query: 387 INAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+ +N K+ N K+ R + + +K
Sbjct: 248 VEEMNGKDI---NGKMVFVGRAQKKVERQAELK 277
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 199 (75.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/250 (24%), Positives = 116/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T+ + YA+V F + + A+ AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K V NI + +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H A A K++ ++ G R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGM-LLNG---RKVFVGQFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 160 (61.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 48/188 (25%), Positives = 87/188 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-------- 203
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 204 -HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
H ++ L M P+ + ED LFVG + T E +++ + +G ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDEC 124
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
++ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 125 TVLRG--PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGL 181
Query: 323 EIMAHVKT 330
M V T
Sbjct: 182 RRMQQVAT 189
Score = 104 (41.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 131
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTL 155
Score = 81 (33.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 392 NGFQIGMKRLKVQLK 406
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 199 (75.1 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 64/250 (25%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ + K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 199 (75.1 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 64/250 (25%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQE---AADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE +
Sbjct: 248 VEEMNGKEIT 257
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 175 (66.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 67/247 (27%), Positives = 110/247 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 281 MFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVP 337
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIK 111
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
E +RD + YG + I + + + K++ + F+ F H+ + + +
Sbjct: 112 EDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTIN 169
Query: 398 G-NSKVKLRARLSNPMPKTQAVKG--GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRAN 454
G N +VK +A M + +G G SG F +GHG + +G G G G N
Sbjct: 170 GHNCEVK-KALSKQEMQSAGSQRGCGGGSGNF-MGHGGN-----FGGGGGNFGRGGNSGY 222
Query: 455 FQRGRGF 461
+G G+
Sbjct: 223 GNQGGGY 229
Score = 123 (48.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 47/167 (28%), Positives = 79/167 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-HAKRALT 210
++FIGGL + T + +R+ F++ G + + + ++ T R++G+ FV ++ +E A
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 211 EMK--NPVICGKRCGTAPSEDN---------DTLFVGNICNTWTKEAIKQKLKDYGVEGV 259
K V+ KR ED+ +FVG I + ++ + YG +
Sbjct: 74 PHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGK--I 129
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
E I ++ D Q G RGFAFV F H VD + +QK + GH
Sbjct: 130 ETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKYHTINGH 171
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 198 (74.8 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 63/250 (25%), Positives = 116/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L DAT+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 162 (62.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 47/177 (26%), Positives = 86/177 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-------- 203
++FIG + R+ ++D++ +FE+ G++ E+ + K+ T +KG AF+ + +E
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 204 -HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
H ++ L M P+ + ED LFVG + T E +++ + +G ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRRMFETFG--NIDEC 124
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
++ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 125 TVLRG--PDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLV-VKFADTEKE 178
Score = 103 (41.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVR++FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRG-PD 131
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 GTSKGCAFVKFQTHTEAQAAINAL 155
Score = 79 (32.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G+VI + + +T + K +GF+ F +A A I ++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 439 NGFQIGMKRLKVQLK 453
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 160 (61.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 48/188 (25%), Positives = 87/188 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-------- 203
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 204 -HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
H ++ L M P+ + ED LFVG + T E +++ + +G ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDEC 124
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
++ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 125 TVLRG--PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGL 181
Query: 323 EIMAHVKT 330
M V T
Sbjct: 182 RRMQQVAT 189
Score = 104 (41.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 131
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTL 155
Score = 81 (33.6 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 438 NGFQIGMKRLKVQLK 452
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 160 (61.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 48/188 (25%), Positives = 87/188 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-------- 203
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 204 -HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
H ++ L M P+ + ED LFVG + T E +++ + +G ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDEC 124
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
++ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 125 TVLRG--PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGL 181
Query: 323 EIMAHVKT 330
M V T
Sbjct: 182 RRMQQVAT 189
Score = 104 (41.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 131
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTL 155
Score = 81 (33.6 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 442 NGFQIGMKRLKVQLK 456
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 173 (66.0 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNI 238
+ N I G+ G S DN LF+G I
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGI 158
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 160 (61.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 48/188 (25%), Positives = 87/188 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-------- 203
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 204 -HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
H ++ L M P+ + ED LFVG + T E +++ + +G ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDEC 124
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
++ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 125 TVLRG--PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGL 181
Query: 323 EIMAHVKT 330
M V T
Sbjct: 182 RRMQQVAT 189
Score = 104 (41.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 131
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTL 155
Score = 81 (33.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 471 NGFQIGMKRLKVQLK 485
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 126 (49.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 44/166 (26%), Positives = 72/166 (43%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
TLF+ N+ T T+ +K+ G I+ D LS GF FV + A A
Sbjct: 394 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKA 453
Query: 292 YKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
+RLQ +V GH ER V+ A + R+ + + +P +I
Sbjct: 454 LRRLQGC-IVDGHKLEVKISERAVRPA-VKSSRKKQTVKKQKTSKILVRNIPFQATVREI 511
Query: 346 RDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
R+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 512 RELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNAL 557
Score = 120 (47.3 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++ + + +F+ L +T+ED+ K+F + G + E+ + T + KG+AF+ +
Sbjct: 70 EEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIP 129
Query: 203 EHAKRALTEMKNPVICGKRCGTAPS 227
EHA +A EM V G+ PS
Sbjct: 130 EHAVKAYAEMDGQVFQGRMMHLLPS 154
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
T + + V NI T I++ +G ++ + L + G RGF FV F
Sbjct: 488 TVKKQKTSKILVRNIPFQATVREIRELFSTFGE--LKTVRLPKKMAGTGSHRGFGFVDFL 545
Query: 284 CHVDAMAAYKRLQKPDVVFG 303
DA A+ L ++G
Sbjct: 546 TKQDAKKAFNALCHSTHLYG 565
Score = 47 (21.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 21/105 (20%), Positives = 41/105 (39%)
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFI 375
E D E T+F+ + E +++ G V +++ T +GF+
Sbjct: 383 EEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFV 442
Query: 376 DFSTHEAAVACINAINNKEFSDGNS-KVKLRARLSNPMPKTQAVK 419
++ E+A + + DG+ +VK+ R P K+ K
Sbjct: 443 EYKKPESAQKALRRLQGC-IVDGHKLEVKISERAVRPAVKSSRKK 486
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 196 (74.1 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 67/253 (26%), Positives = 120/253 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L + N + K ++I K L D + G + + +V
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D H G SRGF FV F H A A + + ++ +R V V + RE + E+ A
Sbjct: 133 D-DH-G-SRGFGFVHFETHEAAQNAIRTMN--GMLLN--DRKVFVGHFKSRREREAELGA 185
Query: 327 HV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+++ + E ++D +G ++ + + R+ S R +GF++F HE A
Sbjct: 186 RALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSR-GFGFVNFEKHEDA 244
Query: 384 VACINAINNKEFS 396
+ +N KE S
Sbjct: 245 QKAVTDMNGKEVS 257
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 193 (73.0 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 72/271 (26%), Positives = 127/271 (46%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
+E+N AK R +++G L D T++ + + F +G V+ +R+ ++ T R+ GYA
Sbjct: 57 KEMNVAAKYRMAS----LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYA 112
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKL- 251
+V F A++AL M +I GK S+ + L I N + K ++I K
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTL 172
Query: 252 -KDYGVEG-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK----RLQKPDVVFGHP 305
+ + G + + ++SD Q G S+G+AFV F A A + +L K VF
Sbjct: 173 YEHFSAFGKILSSKVMSDDQ--G-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGR 229
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
+ K AE LR E V++ + +++D YG + + + + S
Sbjct: 230 FKNRKDREAE-LRSKASEFT----NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-S 283
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+ K K +GF+ F +HEAA + +N ++ +
Sbjct: 284 SGKSKGFGFVSFDSHEAAKKAVEEMNGRDIN 314
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 188 (71.2 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 71/264 (26%), Positives = 119/264 (45%)
Query: 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 286
ED +F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 42 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---- 93
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 346
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 94 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 147
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 405
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 148 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 203
Query: 406 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQ 463
+S + Q + G GGF G +R GRG G + ++N+ +N+ +G+
Sbjct: 204 VAMSKEQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGN 252
Query: 464 HGRNHSSRMGPTEYDFDNRYTEFH 487
+G N G YD+ Y ++
Sbjct: 253 YGYNSQGYGGYGGYDYTG-YNNYY 275
Score = 156 (60.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 45/156 (28%), Positives = 79/156 (50%)
Query: 132 EDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
E E +++A +K+ + E ++FIGGL D T++D++ F + GEV++ L + T R+
Sbjct: 29 ESEGAKIDA-SKNEE--DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRS 85
Query: 192 KGYAFVKFANKEHAKRALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEA 246
+G+ FV F E + + + + VI KR +++ +FVG + +E
Sbjct: 86 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEK 145
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
I++ +G VE+I L D RGF F+ F
Sbjct: 146 IREYFGGFGE--VESIELPMD-NKTNKRRGFCFITF 178
Score = 117 (46.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 120 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 179
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 180 EEEPVKKIM 188
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 276 GYGDYSNQQSGYGKVSRRGGH 296
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 197 (74.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 62/182 (34%), Positives = 93/182 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKN----PVICGK---RCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N P G R E + LFV ++ T + I++ YG VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R P
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR-P 296
Query: 321 DP 322
P
Sbjct: 297 RP 298
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 197 (74.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 62/182 (34%), Positives = 93/182 (51%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKN----PVICGK---RCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N P G R E + LFV ++ T + I++ YG VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R P
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR-P 296
Query: 321 DP 322
P
Sbjct: 297 RP 298
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 63/250 (25%), Positives = 116/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI G+ S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETHE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAEMGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + I + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKEMN 257
Score = 129 (50.5 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 46/176 (26%), Positives = 82/176 (46%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+APS +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMMTRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
DA A + DV+ G P V++ +++ R+P + V +F+ +
Sbjct: 61 QPADAERALDTMNF-DVIKGRP---VRIMWSQ--RDPSLR-KSGVGNIFIKNLDKSIDNK 113
Query: 344 QIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGMLLND 165
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 61/250 (24%), Positives = 117/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI G+ S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ +++++D YG+ + I + + K + +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKEMN 257
Score = 122 (48.0 bits), Expect = 0.00047, P = 0.00047
Identities = 45/176 (25%), Positives = 81/176 (46%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+APS +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGA--ILSIRVCRDMITRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
DA A + DV+ G P V++ +++ R+P + V +F+ +
Sbjct: 61 QPADAERALDTMNF-DVIKGRP---VRIMWSQ--RDPSLR-KSGVGNIFIKNLDKSIDNK 113
Query: 344 QIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F T EAA I +N +D
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETQEAAERAIEKMNGMLLND 165
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 160 (61.4 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N KD+ K +FIG + R+ ++D++ +FE+ G++ E+ + K+ T +KG AF+
Sbjct: 127 NGTMKDQDAIK---LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLT 183
Query: 199 FANKE---------HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
+ +E H ++ L M P+ + ED LFVG + T+E + +
Sbjct: 184 YCARESAIKAQNALHEQKTLPGMTRPIQVKPADSESRGEDRK-LFVGMLNKQQTEEDVYR 242
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
+ YGV +E ++ +G S+G AFV FS H +A +A L
Sbjct: 243 LFEPYGV--IEECTVLRG--PDGNSKGCAFVKFSTHAEAQSAISAL 284
Score = 83 (34.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +N++ +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 574 NGFQIGMKRLKVQLK 588
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 195 (73.7 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 64/288 (22%), Positives = 132/288 (45%)
Query: 131 LEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
++D++++ ++ + ++ +++G L+ ++ + +F IG V +R+ ++ T
Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITK 76
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEA--- 246
+ GYA+V F + E ++A+ ++ I G+ C S+ + +L N + K
Sbjct: 77 TSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPD 136
Query: 247 IKQK-LKD-YGVEG-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303
I K L D + V G + + + +D G S+GF FV F A A L ++
Sbjct: 137 IDNKALYDTFSVFGDILSSKIATD--ENGKSKGFGFVHFEEEGAAKEAIDALN--GMLLN 192
Query: 304 HPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
E V + R+ E AH +++ + + Q ++ +G ++ L +
Sbjct: 193 GQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEK 252
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+ + K K +GF+++ HE AV + A+N+ E + G RA+ N
Sbjct: 253 D-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELN-GEKLYVGRAQKKN 298
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 188 (71.2 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 75/267 (28%), Positives = 124/267 (46%)
Query: 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 286
ED +FVG + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 51 EDEGKMFVGGL--SW--DTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK--- 103
Query: 287 DAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
+A + K + QK + G + + A+ ++ +P VK +F+ G+ P E +I
Sbjct: 104 EAESVEKVITQKEHKLNG---KVIDPKKAKAMKTKEP-----VKKIFVGGLSPDTPEEKI 155
Query: 346 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKL 404
R+ YG+V I L T KR+ + FI F E + I K++ + G SK ++
Sbjct: 156 REYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEP----VKKIMEKKYHNIGLSKCEV 211
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA--NF-QRGRGF 461
+ +S + Q GG GG+ +SR GRG G ++N+ N+ +G G
Sbjct: 212 KVAMSKEQYQQQQQWGGR-GGY-----TSR-----GRGRGGPNQNWNQGYGNYWNQGYGN 260
Query: 462 Y-QHGRNHSSRMGPTEYDFDNRYTEFH 487
Y +G N+ G YD+ Y ++
Sbjct: 261 YGNYGYNNQGYGGYGGYDYSG-YNNYY 286
Score = 159 (61.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 49/184 (26%), Positives = 89/184 (48%)
Query: 137 ELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
E + I + + E ++F+GGL D T++D++ F + GEV++ L + T R++G+ F
Sbjct: 40 EGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGF 99
Query: 197 VKFANKEHAKRALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKL 251
V F E ++ +T+ + VI K+ +++ +FVG + +E I++
Sbjct: 100 VLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYF 159
Query: 252 KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 311
YG VE+I L + RGF F+ F + K ++K G + VKV
Sbjct: 160 DAYGE--VESIELPME-NKTNKRRGFCFITFK---EEEPVKKIMEKKYHNIGLSKCEVKV 213
Query: 312 AFAE 315
A ++
Sbjct: 214 AMSK 217
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ R GH
Sbjct: 287 GYGDYSNQQSGYGKSQRRGGH 307
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 194 (73.4 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 194 (73.4 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 67/253 (26%), Positives = 121/253 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQK-LKD-YGVEG-VENINLVS 266
++ G+ S+ + L VGNI +++I K L D + G + + +
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D +H G SRGF FV F H A A + ++ +R V V + RE + E+ A
Sbjct: 133 D-EH-G-SRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAELGA 185
Query: 327 HV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+++ +P E ++D +G ++ + + R+ S R +GF++F HE A
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEA 244
Query: 384 VACINAINNKEFS 396
+ +N KE S
Sbjct: 245 QKAVVHMNGKEVS 257
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 157 (60.3 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 48/186 (25%), Positives = 87/186 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA--- 208
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ A +A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 209 LTEMKNPVICGKRCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
L E K + P++ LFVG + T E +++ + +G ++ +
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTV 125
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +G S+G AFV F H +A AA L + G V V FA+ +E
Sbjct: 126 LRG--PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGLRR 182
Query: 325 MAHVKT 330
M V T
Sbjct: 183 MQQVAT 188
Score = 110 (43.8 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
TL R + D + + + ++F+G L + T EDVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDG 131
Query: 190 RNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 132 TSKGCAFVKFQTHAEAQAAINTL 154
Score = 81 (33.6 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 442 NGFQIGMKRLKVQLK 456
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 194 (73.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 194 (73.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 194 (73.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 194 (73.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 194 (73.4 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 62/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 193 (73.0 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 68/253 (26%), Positives = 122/253 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L VGNI +++I K L D + G + + +V
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D +H G SRGF FV F H A A + ++ +R V V + RE + E+ A
Sbjct: 133 D-EH-G-SRGFGFVHFETHEAAQNAISTMN--GMLLN--DRKVFVGHFKSRREREVELGA 185
Query: 327 HVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+++ + E +++D +G ++ + + R+ S R +GF++F HE A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSR-GFGFVNFEKHEEA 244
Query: 384 VACINAINNKEFS 396
+ +N +E S
Sbjct: 245 QKAVVNMNGREVS 257
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 193 (73.0 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 63/261 (24%), Positives = 119/261 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI G+ S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + + K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIDKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + + + + K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFSDGNSKVKLRAR 407
++ +N K+ + G S RA+
Sbjct: 248 VDEMNGKDMN-GKSMFVGRAQ 267
Score = 121 (47.7 bits), Expect = 0.00060, P = 0.00060
Identities = 45/176 (25%), Positives = 82/176 (46%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+APS +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGP--ILSIRVCRDMITRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
DA A + DV+ G P V++ +++ R+P + V +F+ +
Sbjct: 61 QPADAERALDTMNF-DVIKGRP---VRIMWSQ--RDPSLR-KSGVGNIFIKNLDKSIDNK 113
Query: 344 QIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F T EAA I+ +N +D
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETQEAAERAIDKMNGMLLND 165
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 126 (49.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 44/166 (26%), Positives = 72/166 (43%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
TLF+ N+ T T+ +K+ G I+ D LS GF FV + A A
Sbjct: 718 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKA 777
Query: 292 YKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
+RLQ +V GH ER V+ A + R+ + + +P +I
Sbjct: 778 LRRLQGC-IVDGHKLEVKISERAVRPA-VKSSRKKQTVKKQKTSKILVRNIPFQATVREI 835
Query: 346 RDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
R+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 836 RELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNAL 881
Score = 120 (47.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++ + + +F+ L +T+ED+ K+F + G + E+ + T + KG+AF+ +
Sbjct: 394 EEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIP 453
Query: 203 EHAKRALTEMKNPVICGKRCGTAPS 227
EHA +A EM V G+ PS
Sbjct: 454 EHAVKAYAEMDGQVFQGRMMHLLPS 478
Score = 60 (26.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
T + + V NI T I++ +G ++ + L + G RGF FV F
Sbjct: 812 TVKKQKTSKILVRNIPFQATVREIRELFSTFGE--LKTVRLPKKMAGTGSHRGFGFVDFL 869
Query: 284 CHVDAMAAYKRLQKPDVVFG 303
DA A+ L ++G
Sbjct: 870 TKQDAKKAFNALCHSTHLYG 889
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 128 (50.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 46/168 (27%), Positives = 75/168 (44%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 289
TLF+ N+ T+E +K+ G V++ ++ G LS GF FV + A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGT--VKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQ 788
Query: 290 AAYKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
A K+LQ VV GH ER K A ++ P K + + +P
Sbjct: 789 KALKQLQG-HVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK-ILVRNIPFQAHSR 846
Query: 344 QIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
+IR+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 847 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 118 (46.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
R L ++ + + +F+ L +T+ED+ K+F + G + E+ + T + KG+A
Sbjct: 387 RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFA 446
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227
F+ F EHA +A +E+ V G+ PS
Sbjct: 447 FITFMFPEHAVKAYSEVDGQVFQGRMLHVLPS 478
Score = 78 (32.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
+ R E A ++ H + + G + T+++V + + + + +R+ +N N+
Sbjct: 276 EARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKT- 333
Query: 193 GYAFVKFANKEHAKRAL 209
GY FV F+N+E K+AL
Sbjct: 334 GYIFVDFSNEEEVKQAL 350
Score = 55 (24.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 31/136 (22%), Positives = 54/136 (39%)
Query: 215 PVICGKRCGTAPSEDNDT-LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 273
P + R P + + + V NI I++ +G ++ + L + G
Sbjct: 815 PAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGE--LKTVRLPKKMTGTGT 872
Query: 274 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 333
RGF FV F DA A+ L ++G R + + +A+ E + + KT
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYG---RRLVLEWADS--EVTLQALRR-KTAAH 926
Query: 334 DGVPPHWKENQIRDQI 349
PP K + + D+I
Sbjct: 927 FHEPPKKKRSVVLDEI 942
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 69/253 (27%), Positives = 120/253 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L VGNI +++I K L D + G + + +V
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D H G SRGF FV F H A A + ++ +R V V + RE + E+ A
Sbjct: 133 D-DH-G-SRGFGFVHFETHEAAQQAITTMN--GMLLN--DRKVFVGHFKSRREREVELGA 185
Query: 327 HVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+++ + E ++D +G ++ + + R+ S R +GF++F HE A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSR-GFGFVNFQKHEEA 244
Query: 384 VACINAINNKEFS 396
+ +N KE S
Sbjct: 245 QKAVMDMNGKEVS 257
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 41/134 (30%), Positives = 70/134 (52%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GGLD TQE +R F + GEV++ + K+ +TN+++G+ FVKF + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 212 MKNPVICGKRCGTAPSEDN---DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
P R P DN + +FVG I + + +++ K +GV V + ++ D
Sbjct: 71 --RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV--VTEVVMIYDA 126
Query: 269 QHEGLSRGFAFVMF 282
+ + RGF F+ F
Sbjct: 127 EKQR-PRGFGFITF 139
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 63/221 (28%), Positives = 101/221 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 411 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 448
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 261 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 299
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 154 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 211
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 212 ELPMD-NKTNKRRGFCFITF 230
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 172 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 232 EEEPVKKIM 240
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 73/275 (26%), Positives = 119/275 (43%)
Query: 221 RCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
+ G P E LF+G + T +++++ + +G + + ++ D Q + SRGF
Sbjct: 9 KVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFG 65
Query: 279 FVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLD 334
FV +SC VDA A R K D P+R V RE + AH VK +F+
Sbjct: 66 FVTYSCVEEVDA-AMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVG 117
Query: 335 GVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 394
G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 118 GIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYH 175
Query: 395 FSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFN 451
+G N +VK +A M +Q +GG SG F +G G+ F G G G G+
Sbjct: 176 TINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN---FGG-GGGGGGPGYGNP 229
Query: 452 RANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 486
+ G G Y G N G Y Y +F
Sbjct: 230 GGGYGGGGGGYD-GYNEGGNFGGGNYGGSGNYNDF 263
Score = 140 (54.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 50/186 (26%), Positives = 89/186 (47%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR + + K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 4 RRRKGKVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 63
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A++ ++ V+ KR ED+ +FVG I
Sbjct: 64 FGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 121
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ +++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 122 DTEEYNLREYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 174
Query: 299 DVVFGH 304
+ GH
Sbjct: 175 HTINGH 180
Score = 46 (21.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 416 QAVKGGMSGGFRIGHGSSRT--FSRYGRGSGRAGH 448
Q+ G M GG G SS + YG GSG G+
Sbjct: 271 QSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGY 305
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 179 (68.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 32 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 78
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 79 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 137
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 138 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 193
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 194 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 242
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 243 QGYGGYGGYDYTG-YNNYY 260
Score = 157 (60.3 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 27 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 86
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 87 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 144
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 145 ELPMD-NKTNKRRGFCFITF 163
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 105 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 164
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 165 EEEPVKKIM 173
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 185 (70.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 70/264 (26%), Positives = 119/264 (45%)
Query: 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHV 286
ED +F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 73 EDEGKMFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---- 124
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 346
K + D V E + +P R + VK +F+ G+ P E +IR
Sbjct: 125 ------KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 178
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLR 405
+ G+G+V I L + T KR+ + FI F E + I K++ + G SK +++
Sbjct: 179 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIK 234
Query: 406 ARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQ 463
+S + Q + G GGF G +R GRG G + ++N+ +N+ +G+
Sbjct: 235 VAMSKEQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGS 283
Query: 464 HGRNHSSRMGPTEYDFDNRYTEFH 487
+G N G YD+ Y ++
Sbjct: 284 YGYNSQGYGGYGGYDYTG-YNSYY 306
Score = 151 (58.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/138 (28%), Positives = 69/138 (50%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E ++FIGGL D T++D++ F + G+V++ L + T R++G+ FV F E + +
Sbjct: 75 EGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 134
Query: 210 TE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ + VI KR +++ +FVG + +E I++ +G VE+I L
Sbjct: 135 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESIEL 192
Query: 265 VSDIQHEGLSRGFAFVMF 282
D RGF F+ F
Sbjct: 193 PMD-NKTNKRRGFCFITF 209
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 151 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 210
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 211 EEEPVKKIM 219
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 307 GYGDYSNQQSGYGKVSRRGGH 327
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 191 (72.3 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 64/251 (25%), Positives = 122/251 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L + N + K E+I K L D + G + + +V
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D +H G SRG+ FV F AA + +Q + + + +R V V + RE + E A
Sbjct: 133 D-EH-G-SRGYGFVHFETQE---AANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 327 HVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V V++ + ++R+ +G+ + + + + T + + +GF+++ HE A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEA 244
Query: 384 VACINAINNKE 394
++ +N KE
Sbjct: 245 QKAVSEMNGKE 255
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 186 (70.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 71/269 (26%), Positives = 125/269 (46%)
Query: 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
+N AK R +++G L D T++ + + F +G V+ +R+ ++ T R+ GYA+V
Sbjct: 1 MNVAAKYRMAS----LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 56
Query: 198 KFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKL--K 252
F A++AL M +I GK S+ + L I N + K ++I K +
Sbjct: 57 NFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYE 116
Query: 253 DYGVEG-VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK----RLQKPDVVFGHPER 307
+ G + + ++SD Q G S+G+AFV F A A + +L K VF +
Sbjct: 117 HFSAFGKILSSKVMSDDQ--G-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFK 173
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K AE LR E V++ + +++D YG + + + + S+
Sbjct: 174 NRKDREAE-LRSKASEFT----NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSG 227
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFS 396
K K +GF+ F +HEAA + +N ++ +
Sbjct: 228 KSKGFGFVSFDSHEAAKKAVEEMNGRDIN 256
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 162 (62.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 49/183 (26%), Positives = 89/183 (48%)
Query: 149 KEHE---IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE-- 203
K+H+ +FIG + R+ ++D+R +FE G++ E+ + K+ T +KG AF+ + +E
Sbjct: 42 KDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESA 101
Query: 204 -------HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGV 256
H ++ L M P+ + ED LFVG + ++ +++ + +G
Sbjct: 102 LKAQTALHEQKTLPGMNRPIQVKPADSESRGEDRK-LFVGMLNKQQCEDDVRRLFESFG- 159
Query: 257 EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E ++ +G S+G AFV +S H +A AA L + G V V FA+
Sbjct: 160 -SIEECTILRG--PDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLV-VKFADT 215
Query: 317 LRE 319
+E
Sbjct: 216 DKE 218
Score = 128 (50.1 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 46/221 (20%), Positives = 92/221 (41%)
Query: 222 CGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 279
C T P +D+D LF+G I ++ ++ +++G + + ++ D + G+ +G AF
Sbjct: 36 CATIPMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGK--IYELTVLKD-RFTGMHKGCAF 92
Query: 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 339
+ + A+ A L + + G R ++V + D E + +F+ +
Sbjct: 93 LTYCARESALKAQTALHEQKTLPGM-NRPIQV------KPADSESRGEDRKLFVGMLNKQ 145
Query: 340 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399
E+ +R + +G + + R K F+ +STH A A I+A++ + G
Sbjct: 146 QCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISALHGSQTMPGA 204
Query: 400 SKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 440
S + +T M+G I + + F YG
Sbjct: 205 SSSLVVKFADTDKERTIRRMQQMAGQMGIFNPMALQFGAYG 245
Score = 73 (30.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + + ++ +G+VI + + +T + K +GF+ F +A A I ++
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 496
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 497 NGFQIGMKRLKVQLK 511
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 65/251 (25%), Positives = 122/251 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++IG L D T+ + + F G ++ +R+ ++ +T R+ YA++ F A+RAL M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L + N + K E+I K L D + G + + +V
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D +H G SRG+ FV F H AA + +Q + + + +R V V + RE + E A
Sbjct: 133 D-EH-G-SRGYGFVHFETHE---AANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 327 HVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V V++ + ++R+ +G+ + + + + S + + +GF+++ HE A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEA 244
Query: 384 VACINAINNKE 394
++ +N KE
Sbjct: 245 QKAVSEMNGKE 255
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 58/211 (27%), Positives = 101/211 (47%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
D R + + + + + FIGG+ + T + + + FE+ G V V + ++ T RN+
Sbjct: 96 DSLRINECLNNSKNLNEPFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNR 155
Query: 193 GYAFVKFA---NKEHAKRALTEMKNP-VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIK 248
G+AFV A NKE R E+ V + T PS+ +FVG + WTK+ ++
Sbjct: 156 GFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLE 215
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+G ++ + +V D G SR F FV+FS + +++A + ++ + ++
Sbjct: 216 SYFSTFGE--IDVVQIVLD--SSGRSRCFGFVVFS-NENSVAKVLKHKRHKIY----DKM 266
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 339
V+V AEP ++P I F PPH
Sbjct: 267 VEVRKAEP-KKPKMSIKRSNNKNF-SKFPPH 295
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 58/211 (27%), Positives = 101/211 (47%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
D R + + + + + FIGG+ + T + + + FE+ G V V + ++ T RN+
Sbjct: 96 DSLRINECLNNSKNLNEPFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNR 155
Query: 193 GYAFVKFA---NKEHAKRALTEMKNP-VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIK 248
G+AFV A NKE R E+ V + T PS+ +FVG + WTK+ ++
Sbjct: 156 GFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLE 215
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+G ++ + +V D G SR F FV+FS + +++A + ++ + ++
Sbjct: 216 SYFSTFGE--IDVVQIVLD--SSGRSRCFGFVVFS-NENSVAKVLKHKRHKIY----DKM 266
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 339
V+V AEP ++P I F PPH
Sbjct: 267 VEVRKAEP-KKPKMSIKRSNNKNF-SKFPPH 295
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 61/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 61/250 (24%), Positives = 115/250 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 65/226 (28%), Positives = 107/226 (47%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDA-M 289
L +G + T +++++ + +G + + +++D Q E SRGF FV +SC VDA M
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGT--LTDCVVMTDPQTEH-SRGFGFVTYSCVEEVDAAM 57
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRD 347
A+ VV P+R V RE + AH VK +F+ G+ +E +RD
Sbjct: 58 CAWPHKVDGRVV--EPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 108
Query: 348 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSK 401
+ YG + I + + + K++ + F+ F H+ + +AIN N E SK
Sbjct: 109 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSK 168
Query: 402 VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
++++ + P Q GG SG F +G G + F R G G G G
Sbjct: 169 QEMQS--AGP----QRGHGGGSGNF-MGRGGN--FGRGGPGYGNQG 205
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 189 (71.6 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 66/273 (24%), Positives = 121/273 (44%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
V+ GK S+ + +L + N + K ++I K NI +
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 133
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F DA A + ++K + + + +R V V + +E + E+ A K
Sbjct: 134 DENGSKGYAFVHFETQ-DA--ADRAIEKMNGMLLN-DRKVFVGRFKSRKEREAEMGAKAK 189
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + + + + T K + +GF+ + HE A
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKA 248
Query: 387 INAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+ +N E N K R M + +K
Sbjct: 249 VEEMNGTEL---NGKTVFVGRAQKKMERQAELK 278
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 189 (71.6 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 58/252 (23%), Positives = 114/252 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T + + F + G+V+ VR+ ++ +T R+ GY +V +A + A RAL E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKL--KDYGVEGVENINLVSD 267
+ G+ S + +L + N + K ++I K + + G ++
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFG-PILSCKVA 165
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA-FAEPL-REPDPEIM 325
+ G S+G+ FV + A A +L ++ ++ V V F L R+P E +
Sbjct: 166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLN--GMLLN--DKQVYVGPFVHKLQRDPSGEKV 221
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
V++ + + ++ +G V+ R+ K K +GF++F + A
Sbjct: 222 KFTN-VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAAR 279
Query: 386 CINAINNKEFSD 397
++A+N K F D
Sbjct: 280 AVDALNGKTFDD 291
Score = 138 (53.6 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 62/288 (21%), Positives = 119/288 (41%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + + F G ++ ++ + S ++KGY FV++ E A+ A+ ++
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 213 KNPVICGKRCGTAP-----SEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ K+ P D ++V N+ + + E + + ++GV
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV--TT 251
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERT------V 309
+ ++ D EG S+GF FV F DA A K + G ++ +
Sbjct: 252 SCVIMRD--GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 309
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
K F + L+E + +++ + ++++R+ +G + + R+ S R
Sbjct: 310 KQKFEQSLKEAADKSQG--SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR 367
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
GF+ FST E A I +N K V L R + + QA
Sbjct: 368 GS-GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQA 414
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 182 (69.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 76/272 (27%), Positives = 120/272 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 454 NFQRG----RGFYQHGRNHSSRMGPTEYDFDN 481
+ G RG Y G N+ G DF N
Sbjct: 248 GYGGGGGGSRGSYGGG-NYGG--GGNYNDFGN 276
Score = 134 (52.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 181 (68.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 62/221 (28%), Positives = 101/221 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 411 PMPKTQ---AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 448
+ Q +GG +G R G G + S YG+ S R GH
Sbjct: 259 EQYQQQQQWGSRGGFAGRAR-GRGGDQQ-SGYGKVSRRGGH 297
Score = 154 (59.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 40/140 (28%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + G+V++ L + T R++G+ FV F E +
Sbjct: 92 REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 152 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 209
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 210 ELPMD-NKTNKRRGFCFITF 228
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 170 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 229
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 230 EEEPVKKIM 238
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 130 (50.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 44/168 (26%), Positives = 75/168 (44%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 289
TLF+ N+ + T+E +K G +++ + G LS GF FV + A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 290 AAYKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
A K+LQ V GH ER K A ++ P+ K + + +P +
Sbjct: 781 KALKQLQG-HTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK-ILVRNIPFQANQR 838
Query: 344 QIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
+IR+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 839 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
Score = 112 (44.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
R L ++ + +F+ L +++ED+ K+F G + E+ + T + KG+A
Sbjct: 385 RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA 444
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227
FV F EHA +A E+ V G+ PS
Sbjct: 445 FVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 476
Score = 60 (26.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 21/90 (23%), Positives = 36/90 (40%)
Query: 215 PVICGKRCGTAPSEDNDT-LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 273
P + R P + + + V NI + I++ +G ++ + L + G
Sbjct: 807 PALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGE--LKTVRLPKKMTGTGA 864
Query: 274 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303
RGF FV F DA A+ L ++G
Sbjct: 865 HRGFGFVDFITKQDAKKAFNALCHSTHLYG 894
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 141 (54.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E ++F+GGL+ + T+E + +VF + G+V EV + K+ + R++G+ FV F N E AK A+
Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM 64
Query: 210 TEMKNPVICGK--RCGTAPSEDND 231
M + G+ R A ND
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSND 88
Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 44/161 (27%), Positives = 68/161 (42%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ E + YG V +V+ ++ + + + +GF+ F E A + A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSR-YGRGSGRA 446
N K +V + SN + +GG SGG FR G G R YG GS R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSND--RRGGYRGGSSGGRGFFRGGRGRGGGGDRGYG-GSSRF 124
Query: 447 GHHFNRANFQRGRGFYQHGRNHSS---RMGPTEYDFDNRYT 484
+ R +Y GR+H S R G + D + YT
Sbjct: 125 ENRSGGYQSSGSRDYY--GRSHGSYGDRSGGSYRDSYDSYT 163
Score = 46 (21.3 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 527 GPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKR 573
G DRGYG + + R + GR Y DR+ G R
Sbjct: 113 GGDRGYGGSSRFENRSGGYQSSGSRDYYGRSHGS---YGDRSGGSYR 156
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 188 (71.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 62/255 (24%), Positives = 120/255 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ S + L F+ N+ N+ +A+ +G + + +
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG--SILSSKV 130
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
V + +H G SRGF FV F H A A + ++ +R V V + ++ + E+
Sbjct: 131 VYN-EH-G-SRGFGFVHFETHEAAQKAINTMN--GMLLN--DRKVFVGHFKSRQKREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + E ++D +G + + R+ S + + +GFI+F HE
Sbjct: 184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 164 (62.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 54/213 (25%), Positives = 102/213 (47%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + T + ++ + YG + + +V + Q + SR F FV +S +A +A
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYGK--LTDCVVVQNQQLKR-SRCFGFVTYSSPDEADSAM 68
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P ++ G+ + E +P E +A VK +F+ G+ +E+ +RD +
Sbjct: 69 SA--RPHILDGNNVELKRAVAREDAGKP--EALAKVKKIFIGGLKDDIEEDHLRDCFSQF 124
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412
G V + + + T K++ +GF+ F +++A + + +G+ KV+++ L+
Sbjct: 125 GAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV--VLKFHMINGH-KVEVKKALTKQE 181
Query: 413 PKTQAVKGGMSGGFRIGHGSSRTFSRYG-RGSG 444
+ +GG GG G G R + YG RG G
Sbjct: 182 MQAAGSRGGGRGGRGGGRGMGRPQNGYGGRGGG 214
Score = 107 (42.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 39/167 (23%), Positives = 79/167 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++F+GGL+ T + +R FE+ G++ + + +N R++ + FV +++ + A A++
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 211 ----------EMKNPVI---CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE 257
E+K V GK A + +F+G + + ++ ++ +G
Sbjct: 71 RPHILDGNNVELKRAVAREDAGKPEALAKVKK---IFIGGLKDDIEEDHLRDCFSQFGA- 126
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
VE +++D + G RGF FV F + A A + K ++ GH
Sbjct: 127 -VEKAEVITD-KETGKKRGFGFVYFEDNDSADKAV--VLKFHMINGH 169
Score = 99 (39.9 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K + K +IFIGGL D ++ +R F + G V + + + T + +G+ FV F +
Sbjct: 93 KPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDN 152
Query: 203 EHAKRALTEMKNPVICGKR 221
+ A +A+ +K +I G +
Sbjct: 153 DSADKAVV-LKFHMINGHK 170
Score = 58 (25.5 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSR 471
GG GG+ G+G G G G + F Q+ G+ N+S R
Sbjct: 231 GGYGGGYGGGYGGGYGDQMEGYGGGNGYNDFGSGYGQQSSGYGPMKGNYSGR 282
Score = 49 (22.3 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 420 GGMSGGF---RIGHGSSRTFSRYGRGSGRA--------GHHFNRAN--FQRGRGFYQHGR 466
GG GG+ G+G ++ +G G G+ G++ R+N + RG G +GR
Sbjct: 239 GGYGGGYGDQMEGYGGGNGYNDFGSGYGQQSSGYGPMKGNYSGRSNAPYSRGGGGGGYGR 298
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 122 (48.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
R L ++ + +FI L +T+ED++++F + G + E+ + T + KG+A
Sbjct: 390 RTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFA 449
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPS-------EDNDT 232
FV F EHA RA E+ V G+ PS ED DT
Sbjct: 450 FVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDT 493
Score = 120 (47.3 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
TLF+ N+ + T+E +K G+ +I+ + E LS GF FV + A A
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKA 790
Query: 292 YKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
K+LQ VV H ER K A ++ P K + + +P + +I
Sbjct: 791 LKQLQG-HVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK-ILVRNIPFQADKREI 848
Query: 346 RDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
++ +G++ + L + M+ T + +GF+DF T + A A+
Sbjct: 849 QELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 64 (27.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 32/136 (23%), Positives = 56/136 (41%)
Query: 215 PVICGKRCGTAPSEDNDT-LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 273
P + R P + + + V NI K I++ +G ++ + L + G
Sbjct: 815 PALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQELFSTFGE--LKTVRLPKKMTGTGT 872
Query: 274 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 333
RGF FV F DA A++ L ++G R + + +A+ E + + KT
Sbjct: 873 HRGFGFVDFLTKQDAKRAFQALCHSTHLYG---RRLVLEWADS--EVSLQALRR-KTAEH 926
Query: 334 DGVPPHWKENQIRDQI 349
PP K + + D+I
Sbjct: 927 FHEPPKKKRSVVLDEI 942
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 147 (56.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 50/186 (26%), Positives = 91/186 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + A++A+ +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q +G I LV
Sbjct: 130 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQFGRIITSRI-LV 187
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F V+A A K L QKP G E + V FA P ++
Sbjct: 188 DQVT--GVSRGVGFIRFDRRVEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKSSQ 241
Query: 323 EIMAHV 328
+++H+
Sbjct: 242 ALLSHL 247
Score = 86 (35.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/61 (22%), Positives = 36/61 (59%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
++ +++ GL + TQ+++ ++F + G +I R+ + T ++G F++F + A+ A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEA 211
Query: 209 L 209
+
Sbjct: 212 I 212
Score = 82 (33.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 326 AHVKT---VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
AH T +F+ + P EN + +G V + + R+ +T K K +GF+ + ++
Sbjct: 299 AHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 358
Query: 383 AVACINAINNKEFSD 397
A I ++N D
Sbjct: 359 AAVAIASLNGYRLGD 373
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 126 (49.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 46/170 (27%), Positives = 79/170 (46%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 289
TLF+ N+ + T+E +K G V++ ++ G LS GF FV + A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGA--VKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQ 793
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-----MAHVKT---VFLDGVPPHWK 341
A K+LQ VV GH ++V +E +P P +A +T + + +P
Sbjct: 794 KALKQLQG-HVVDGHK---LEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQAD 849
Query: 342 ENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
+IR+ +G++ + L + M+ T + +GF+DF T + A NA+
Sbjct: 850 SREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 115 (45.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
R L ++ + +F+ L +++ED+ K+F + G + E+ + T + KG+A
Sbjct: 388 RTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFA 447
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPS-------EDNDT 232
FV F EHA +A E+ V G+ PS ED DT
Sbjct: 448 FVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDT 491
Score = 75 (31.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
A R+ H + + G + T+++V + + + + +R+ +N N+ GY FV F++
Sbjct: 286 AHQREPTTPHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKT-GYVFVDFSS 343
Query: 202 KEHAKRAL 209
+E K+AL
Sbjct: 344 EEEVKKAL 351
Score = 56 (24.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284
A + + V NI I++ +G ++ + L + G RGF FV F
Sbjct: 831 ARKQTTSKILVRNIPFQADSREIRELFSTFGE--LKTVRLPKKMTGTGTHRGFGFVDFFT 888
Query: 285 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 344
DA A+ L ++G R + + +A+ E + + KT PP K +
Sbjct: 889 KQDAKRAFNALCHSTHLYG---RRLVLEWADS--EVTLQALRR-KTAEHFHEPPKKKRSV 942
Query: 345 IRDQI 349
+ D+I
Sbjct: 943 VLDEI 947
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 148 (57.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 59/214 (27%), Positives = 99/214 (46%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN--------FSTNRNKGYAFVKFANKEH 204
+ I L ++ +QE++R +F IGEV +L ++ + + GY FV + N
Sbjct: 58 LIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSD 117
Query: 205 AKRALTEMKNPVICGKRCGTA---PSEDN--DT-LFVGNICNTWTKEAIKQKLKDYGVEG 258
A+RA+ + + K + PS D D L++ + T T++ ++ YG
Sbjct: 118 AERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYG--R 175
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDVVFGHPER-TVKVAFAE 315
+ N ++ D Q GLSRG AF+ F +A A K L KP G E TVK A A
Sbjct: 176 IINSRILVD-QASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPS---GASEPITVKFA-AN 230
Query: 316 PLREPDPEIMA---HVKTVFLDGVPPHWKENQIR 346
P + + ++++ H ++ G P H + + R
Sbjct: 231 PNQSKNSQLLSQLYHTQSRRFGG-PVHHQPQRFR 263
Score = 98 (39.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/64 (26%), Positives = 39/64 (60%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K+ ++I GL + TQ++V +F + G +I R+ + ++ ++G AF++F + A+ A
Sbjct: 148 KDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEA 207
Query: 209 LTEM 212
+ ++
Sbjct: 208 IKDL 211
Score = 78 (32.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+G V + + R+ +T+K K +GF+ + +E A I+++N D +V ++ S+
Sbjct: 309 FGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSH 367
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 135 (52.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E ++FIGGL D T++ + F + G + V + +N TNR++G+ FV F N + AK AL
Sbjct: 4 EGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDAL 63
Query: 210 TEMKNPVICGK 220
M + G+
Sbjct: 64 EGMNGKSVDGR 74
Score = 118 (46.6 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 38/141 (26%), Positives = 58/141 (41%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ E + D YG + + +ARN T + + +GF+ F + A + +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 450
N K DG + +R +A KGG GG R G G S GRG G
Sbjct: 67 NGKSV-DGRT---IRV--------DEAGKGGGGGGGRSGGGGSYRGGGGGRGGGGGFFRG 114
Query: 451 NRANFQRGRGFYQHGRNHSSR 471
R G G+ R++ R
Sbjct: 115 GRGRGGGGGGYGGGDRSYGDR 135
Score = 55 (24.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 21/58 (36%), Positives = 24/58 (41%)
Query: 416 QAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+A KGG GG R G G S G G GR G G GF++ GR G
Sbjct: 80 EAGKGGGGGGGRSGGGGSYR----GGGGGRGG----------GGGFFRGGRGRGGGGG 123
Score = 53 (23.7 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYD 478
+GG GG+ G G R++ G G G+ + G G + R+ S G
Sbjct: 118 RGGGGGGY--G-GGDRSYGDRSYGGGGGGYKSGGGGYSSGGGG-GYNRDRGSGYGDRSSS 173
Query: 479 FDNRYTEF 486
+ + Y +
Sbjct: 174 YKDGYDSY 181
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 178 (67.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 67/258 (25%), Positives = 118/258 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + T E ++ + YG + + +V + Q SR F FV +S +A AA
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQ--LTDCVVVMN-QPLQRSRCFGFVTYSSTEEADAAM 64
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P +V G+ + E +P E++A VK +F+ G+ ++ ++D +
Sbjct: 65 SA--RPHIVDGNNVDLKRAVAREDAGKP--EMLAKVKKIFVGGLKDDIEDEHLQDYFSQF 120
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + + + + T K++ +GF+ F +++A A+ K S KV+++ L+
Sbjct: 121 GPIEKAQVITDKDTGKKRGFGFVYFDDNDSAD---KAVVMKFHSICGHKVEVKKALTKQE 177
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQ---HGRNH 468
M T +GG GG +G GS F GRG + + F G+ +G +
Sbjct: 178 MQSTGGGRGGR-GGRGMGRGSG--FGGGGRGGYYNDYGYQNNGFGNNSGYDSQNGYGGGY 234
Query: 469 SSRMGPTEYDFDNRYTEF 486
S +MG Y N Y++F
Sbjct: 235 SDQMGGG-YGNGNGYSDF 251
Score = 107 (42.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 39/165 (23%), Positives = 74/165 (44%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GGL+ T E +R FE+ G++ + + N R++ + FV +++ E A A++
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 212 MKNPVICGKRCG---TAPSEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGV 259
+ ++ G ED +FVG + + E ++ +G +
Sbjct: 67 RPH-IVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGP--I 123
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
E +++D + G RGF FV F + A A + K + GH
Sbjct: 124 EKAQVITD-KDTGKKRGFGFVYFDDNDSADKAV--VMKFHSICGH 165
Score = 106 (42.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K + K +IF+GGL D E ++ F + G + + ++ + T + +G+ FV F +
Sbjct: 89 KPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDN 148
Query: 203 EHAKRALTEMKNPVICGKR 221
+ A +A+ MK ICG +
Sbjct: 149 DSADKAVV-MKFHSICGHK 166
Score = 58 (25.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHS 469
GG S G+G+ +S +G G G+ + + G G Y GR S
Sbjct: 232 GGYSDQMGGGYGNGNGYSDFGEGYGQQASGYGA--MKTGYGNYSSGRQSS 279
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 178 (67.7 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 66/256 (25%), Positives = 113/256 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVK--GGMSGGF--RIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 460
+ S+ ++ + GG GGF G FS G G G G + +NF G
Sbjct: 187 ASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGIGDGYNGFGNDGSNFGGGGS 246
Query: 461 FYQHGR--NHSSRMGP 474
+ G N SS GP
Sbjct: 247 YNDFGNYNNQSSNFGP 262
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 291 GYGGSSSSSSYGSG 304
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 70/248 (28%), Positives = 111/248 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T+++++ + +G + + ++ D ++ SRGF FV +S VDA A
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWGK--LTDCVVMRDPANKR-SRGFGFVTYSSVSEVDA-A 70
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E +P + VK +F+ G+ +E IR+ +
Sbjct: 71 MTARPHKVDGRVVEPKRAVS---REDSNKPGAHLT--VKKIFVGGIKEDTEEYHIREYFE 125
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
YG + I + ST K++ + F+ F H+ V I A + N +V+ +A
Sbjct: 126 CYGKIETIDIMEERSTGKKRGFCFVTFDDHDT-VDKIVAQKYHTINSHNCEVR-KALPKQ 183
Query: 411 PMPKT--QAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH-FNR--ANFQRGRGFYQHG 465
M + Q +GG G F G G + F R G G GR G +N N+ G G Y G
Sbjct: 184 EMQSSSNQRYRGGGGGNFT-GRGGN--FGRGGYGGGRGGGDGYNGFGGNYGGGPGGYGGG 240
Query: 466 RNHSSRMG 473
R G
Sbjct: 241 RGGYGNFG 248
Score = 134 (52.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 42/166 (25%), Positives = 84/166 (50%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
++D K ++ ++FIGGL + T++ +R FE+ G++ + + ++ + R++G+ FV ++
Sbjct: 3 SRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYS 62
Query: 201 NKEHAKRALT----EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQ 249
+ A+T ++ V+ KR + + +FVG I + I++
Sbjct: 63 SVSEVDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIRE 122
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYK 293
+ YG +E I+++ + + G RGF FV F H VD + A K
Sbjct: 123 YFECYGK--IETIDIMEE-RSTGKKRGFCFVTFDDHDTVDKIVAQK 165
Score = 47 (21.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 420 GGMSGGFRIGHGSSRTFSRYG--RGSGRAGHHFNRANF--QRGRGFYQHGRNHSSR-MGP 474
GG GG+ G G F G G G G++ + N+ Q+ G N R GP
Sbjct: 231 GGGPGGYGGGRGGYGNFGGGGGSSGGGGGGNYNDFGNYGGQQSNFGPMKGNNFGGRNSGP 290
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 178 (67.7 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 71/263 (26%), Positives = 119/263 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G+ + + +V D + SRGF FV ++ VDA A
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGM--LTDC-VVMD-PNTKRSRGFGFVTYTTVEEVDA-A 79
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R QK D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 80 MNARPQKMDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 134
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS-KVKLRARLS 409
YG + I + + + K++ + F+ F H++ ++ I +++ GN ++R LS
Sbjct: 135 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKIVIQKYHTGNGHNCEVRKALS 190
Query: 410 NP-MPKTQAVKGGMSGGFRIGHGSSRTFS---RYGRG---SGRAGHHFNRAN---FQRGR 459
M + + G SG G G F +GRG SGR G +R G
Sbjct: 191 KQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFAGSRGGGGYAGSGD 250
Query: 460 GFYQHGRNHSSRMGPTEY-DFDN 481
G+ G + S+ G Y DF N
Sbjct: 251 GYNGFGNDGSNFGGGGSYNDFGN 273
Score = 133 (51.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 45/163 (27%), Positives = 77/163 (47%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKNFSTNRNKGYAFVKFANKE 203
+++++ ++FIGGL + T E +R FE+ G + + V + N T R++G+ FV + E
Sbjct: 17 KELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMDPN--TKRSRGFGFVTYTTVE 74
Query: 204 HAKRALT----EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLK 252
A+ +M V+ KR + +FVG I + ++ +
Sbjct: 75 EVDAAMNARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 134
Query: 253 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYK 293
YG +E I +++D + G RGFAFV F H VD + K
Sbjct: 135 QYGK--IEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQK 174
Score = 45 (20.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 424 GGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGF 461
G + G+ R+ YG G G G + +++ GR F
Sbjct: 282 GPMKGGNFGGRSSGPYGDGEGGYGGSSSSSSYGSGRRF 319
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 178 (67.7 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 79/289 (27%), Positives = 123/289 (42%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 111
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 112 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 169
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGF--RIGH--GSSRTFSR---YGRGSG-- 444
+G N +VK +A M +Q +GG SG F R G+ G F R YG G G
Sbjct: 170 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNYGGGPGYS 228
Query: 445 -RAGH------HFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEF 486
R G+ + N+ G G Y G N G Y Y +F
Sbjct: 229 SRGGYGGGGPGYGNQGGGYGGGGGYD-GYNEGGNFGGGNYGGGGNYNDF 276
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T + +R+ FE+ G + + + ++ T R++G+ FV ++ E A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 211 ---EMKNPVICGKRCGTAPSEDN---------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ V+ KR ED+ +FVG I + ++ + YG
Sbjct: 74 RPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK-- 129
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
+E I ++ D Q G RGFAFV F H VD + +QK + GH
Sbjct: 130 IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKYHTINGH 172
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 177 (67.4 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 50/177 (28%), Positives = 89/177 (50%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
K ++ +IF+GG+ + ED+ F + GEV + ++ + + R++G+AFV+F E
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGC 83
Query: 206 KRALTEMKNPVICGKRCGTAP--SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
K AL + I GK P S +N +FVG + + ++++ ++ + +G V++I
Sbjct: 84 KLALAA-REQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK--VDDIE 140
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
D Q + R FAF++F + +A K + FG E VK A + R P
Sbjct: 141 WPFDKQTKA-RRNFAFIVFE---EEESADKASSQTKQTFGTRECDVKKAVPQGKRFP 193
Score = 116 (45.9 bits), Expect = 0.00067, P = 0.00067
Identities = 58/220 (26%), Positives = 94/220 (42%)
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
G SRGFAFV F+ A ++ + G ++V+V A+ RE K V
Sbjct: 67 GRSRGFAFVEFTTGEGCKLALAAREQ--TIKG---KSVEVKPAKS-REN--------KKV 112
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
F+ G+P + E +R + +G V I + T R+++ FI F E+A ++
Sbjct: 113 FVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA-SSQT 171
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQA-VKGG--MSGGFRIGHGSSRTFSRYGR-GSGRAG 447
+ F VK P Q + GG M GG R G+ +S ++ +G+ G+ G
Sbjct: 172 KQTFGTRECDVKKAVPQGKRFPGAQGRMPGGRGMYGG-RGGNNNSGWYAGWGQIGAMPYG 230
Query: 448 HHFNRANFQRGRGFY-QHGRNHSSRMGPTEYDFDNRYTEF 486
G G+Y Q G H + G ++ + + Y F
Sbjct: 231 ATGAAWGDWYGNGYYGQQGAAHHNNSGSSQ-GYGSGYQSF 269
Score = 39 (18.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 605 GSHHHDNVGACSNHYSDDY 623
G+ HH+N G+ S Y Y
Sbjct: 249 GAAHHNNSGS-SQGYGSGY 266
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 184 (69.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 62/254 (24%), Positives = 113/254 (44%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F ++G V+ VR+ ++ T R+ GY +V F N + A RA+ E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENI-NLVSDI 268
+ GK S + ++ GNI E+I K NI + +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-LREPDPEIMAH 327
G S+G+ FV ++ A A ++L ++ K + P LR + + A+
Sbjct: 158 DSSGQSKGYGFVQYANEESAQKAIEKLN--GMLLND-----KQVYVGPFLRRQERDSTAN 210
Query: 328 VKTVFLDGVPPHWKENQIRDQIKG----YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
KT F + + E+ D +K YG + V+ ++ K K +GF++F + A
Sbjct: 211 -KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDA 268
Query: 384 VACINAINNKEFSD 397
+ ++N +F D
Sbjct: 269 ARAVESLNGHKFDD 282
Score = 166 (63.5 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 65/288 (22%), Positives = 128/288 (44%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + S+ ++KGY FV++AN+E A++A+ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 213 KNPVICGKRCGTAP--------SEDNDTLF----VGNICNTWTKEAIKQKLKDYGVEGVE 260
++ K+ P S N T F V N+ + T + +K +YG +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK--IT 242
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDV---VFGHPERT------V 309
+ ++ D EG S+GF FV F DA A + L K D G ++ +
Sbjct: 243 SAVVMKD--GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+V + + L+E + + +++ + P + ++++ +G V + R+ +
Sbjct: 301 RVRYEQNLKEAADKFQS--SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS- 357
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
K GF+ F+T E A ++ ++ K V + R + + QA
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQA 405
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 179 (68.1 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
Score = 157 (60.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 154 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 211
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 212 ELPMD-NKTNKRRGFCFITF 230
Score = 40 (19.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 328 GYGDYSNQQSGYGKVSRRGGH 348
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 179 (68.1 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
Score = 157 (60.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 154 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 211
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 212 ELPMD-NKTNKRRGFCFITF 230
Score = 40 (19.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 328 GYGDYSNQQSGYGKVSRRGGH 348
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 179 (68.1 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
Score = 157 (60.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 154 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 211
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 212 ELPMD-NKTNKRRGFCFITF 230
Score = 40 (19.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 328 GYGDYSNQQSGYGKVSRRGGH 348
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 179 (68.1 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 69/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 99 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 145
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 146 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 261 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 309
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 310 QGYGGYGGYDYTG-YNNYY 327
Score = 157 (60.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 41/140 (29%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E +
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 154 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 211
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 212 ELPMD-NKTNKRRGFCFITF 230
Score = 40 (19.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 328 GYGDYSNQQSGYGKVSRRGGH 348
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 129 (50.5 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E ++F+GGL D ++ + +VF + G++ EV + K+ T R++G+ FV F N + AK A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 210 TEMKNPVICGKR 221
M + G++
Sbjct: 65 MAMNGKSVDGRQ 76
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG---FRIGHGSSRTFSR 438
N K +V + S+ +++ +GG +GG FR G G R FSR
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN--RSRGYRGGSAGGRGFFRGGRGRGRGFSR 116
Score = 53 (23.7 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 432 SSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNH 468
SS SR RG G F R RGRGF G H
Sbjct: 85 SSDNRSRGYRGGSAGGRGFFRGGRGRGRGF-SRGECH 120
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 138 (53.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E ++FIGGL+ D +E + +VF + G++ EV + K+ T R++G+ FV F N + AK A+
Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
Query: 210 TEMKNPVICGKR 221
M + G++
Sbjct: 64 MAMNGKAVDGRQ 75
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 36/141 (25%), Positives = 60/141 (42%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ E + YG + +V+ ++ T + + +GF+ F + A + A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF 450
N K DG ++R + K+ G GG+R G R F R GRG G +
Sbjct: 67 NGKAV-DGR---QIRVDQAG---KSS---GDRRGGYRGGSSGGRGFFRGGRGRGGGDRGY 116
Query: 451 NRANFQRGRGFYQHGRNHSSR 471
+ F G Y G + SR
Sbjct: 117 GSSRFDNRSGGY--GGSSGSR 135
Score = 43 (20.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 527 GPDRGYGEHHSYRRQPFSQGEDFDRPFI--GRQVDDPYFYDDRAHGVKR 573
G DRGYG R G R + GR Y DRA G R
Sbjct: 111 GGDRGYGSSRFDNRSGGYGGSSGSRDYYSSGRSQGS---YGDRAGGSYR 156
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 454 NFQRGRG 460
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 274 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 329
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 390 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 446
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 447 GHHFNRANFQRGRGFYQHG 465
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
Score = 134 (52.2 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
Score = 56 (24.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG R G+G SR G G G++ F G Y G +SSR G
Sbjct: 239 RGGNFGG-RGGYGGGGGGSRGSYGGGDGGYN----GFGGDGGNYGGGPGYSSRGG 288
Score = 55 (24.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 21/66 (31%), Positives = 25/66 (37%)
Query: 421 GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFD 480
G GG G G + SR G G G G+ N+ G G Y G N G Y
Sbjct: 271 GGDGG-NYGGGPGYS-SRGGYGGGGPGYG-NQGGGYGGGGGYD-GYNEGGNFGGGNYGGG 326
Query: 481 NRYTEF 486
Y +F
Sbjct: 327 GNYNDF 332
Score = 53 (23.7 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 437 SRYGRGSGRAGHHFNRA-NFQRGRGFYQHGRNHSSRMG 473
S+ GRG G +G+ R NF G G + G N R G
Sbjct: 212 SQRGRGGG-SGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 454 NFQRGRG 460
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 274 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 329
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 390 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 446
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 447 GHHFNRANFQRGRGFYQHG 465
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
Score = 134 (52.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
Score = 57 (25.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 421 GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFD 480
G GG G G + SR G G G G+ + G G Y G N G Y
Sbjct: 271 GGDGG-NYGGGPGYS-SRGGYGGGGPGYGNQGGGYGGGGGGYD-GYNEGGNFGGGNYGGG 327
Query: 481 NRYTEF 486
Y +F
Sbjct: 328 GNYNDF 333
Score = 56 (24.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG R G+G SR G G G++ F G Y G +SSR G
Sbjct: 239 RGGNFGG-RGGYGGGGGGSRGSYGGGDGGYN----GFGGDGGNYGGGPGYSSRGG 288
Score = 53 (23.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 437 SRYGRGSGRAGHHFNRA-NFQRGRGFYQHGRNHSSRMG 473
S+ GRG G +G+ R NF G G + G N R G
Sbjct: 212 SQRGRGGG-SGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 454 NFQRGRG 460
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 274 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 329
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 390 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 446
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 447 GHHFNRANFQRGRGFYQHG 465
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
Score = 134 (52.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
Score = 57 (25.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 421 GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFD 480
G GG G G + SR G G G G+ + G G Y G N G Y
Sbjct: 271 GGDGG-NYGGGPGYS-SRGGYGGGGPGYGNQGGGYGGGGGGYD-GYNEGGNFGGGNYGGG 327
Query: 481 NRYTEF 486
Y +F
Sbjct: 328 GNYNDF 333
Score = 56 (24.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG R G+G SR G G G++ F G Y G +SSR G
Sbjct: 239 RGGNFGG-RGGYGGGGGGSRGSYGGGDGGYN----GFGGDGGNYGGGPGYSSRGG 288
Score = 53 (23.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 437 SRYGRGSGRAGHHFNRA-NFQRGRGFYQHGRNHSSRMG 473
S+ GRG G +G+ R NF G G + G N R G
Sbjct: 212 SQRGRGGG-SGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 68/247 (27%), Positives = 111/247 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + F G GR G+ R
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN--FGGGGGNFGRGGNFGGRG 247
Query: 454 NFQRGRG 460
+ G G
Sbjct: 248 GYGGGGG 254
Score = 155 (59.6 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 61/199 (30%), Positives = 89/199 (44%)
Query: 274 SRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VK 329
SRGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 75 SRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVK 126
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ G+ +E +RD + YG + I + + + K++ + F+ F H+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-- 184
Query: 390 INNKEFSDG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRA 446
+ +G N +VK +A M +Q +GG SG F +G G + +G G G
Sbjct: 185 VQKYHTINGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGGNF 237
Query: 447 GHHFNRANFQRGRGFYQHG 465
G NF GRG Y G
Sbjct: 238 GRG---GNFG-GRGGYGGG 252
Score = 139 (54.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 52/186 (27%), Positives = 87/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR A D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
Score = 97 (39.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 18/71 (25%), Positives = 40/71 (56%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+GG+ D + ++R FE+ G++ + + ++ + + +G+AFV F + + + + +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 212 MKNPVICGKRC 222
K I G C
Sbjct: 187 -KYHTINGHNC 196
Score = 65 (27.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 21/67 (31%), Positives = 25/67 (37%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDF 479
GG G + G G S SR G G G G + N+ G G G N G Y
Sbjct: 271 GGDGGNYGGGPGYS---SRGGYGGGGPGGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGG 327
Query: 480 DNRYTEF 486
Y +F
Sbjct: 328 GGNYNDF 334
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG R G+G SR G G G++ F G Y G +SSR G
Sbjct: 239 RGGNFGG-RGGYGGGGGGSRGSYGGGDGGYN----GFGGDGGNYGGGPGYSSRGG 288
Score = 53 (23.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 437 SRYGRGSGRAGHHFNRA-NFQRGRGFYQHGRNHSSRMG 473
S+ GRG G +G+ R NF G G + G N R G
Sbjct: 212 SQRGRGGG-SGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 171 (65.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 68/259 (26%), Positives = 116/259 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 1 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 47
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 48 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGA 106
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 162
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 163 EQYQQQQ-QWGSRGGFV---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 211
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 212 QGYGGYGGYDYTG-YNNYY 229
Score = 149 (57.5 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 40/135 (29%), Positives = 67/135 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE- 211
+FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E + + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 212 ---MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ VI KR +++ +FVG + +E I++ +G VE+I L D
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE--VESIELPMD 118
Query: 268 IQHEGLSRGFAFVMF 282
RGF F+ F
Sbjct: 119 -NKTNKRRGFCFITF 132
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 74 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 133
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 134 EEEPVKKIM 142
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 171 (65.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 68/259 (26%), Positives = 116/259 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + E ++ + G SRGF FV+F
Sbjct: 2 MFIGGL--SW--DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF--------- 48
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+
Sbjct: 49 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGA 107
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 108 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 163
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 164 EQYQQQQ-QWGSRGGFV---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGNYGYNS 212
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 213 QGYGGYGGYDYTG-YNNYY 230
Score = 150 (57.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 40/136 (29%), Positives = 68/136 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIGGL D T++D++ F + GEV++ L + T R++G+ FV F E + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 212 ----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 266
+ VI KR +++ +FVG + +E I++ +G VE+I L
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE--VESIELPM 118
Query: 267 DIQHEGLSRGFAFVMF 282
D RGF F+ F
Sbjct: 119 D-NKTNKRRGFCFITF 133
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 142 AKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
AK K K+ +IF+GGL D +E +R+ F GEV + L + TN+ +G+ F+ F
Sbjct: 75 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 134
Query: 201 NKEHAKRAL 209
+E K+ +
Sbjct: 135 EEEPVKKIM 143
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
R L ++ + +F+ L +++ED+ K+F R G V E+ + T + KG+A
Sbjct: 348 RTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFA 407
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227
FV F EHA +A E+ V G+ PS
Sbjct: 408 FVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 439
Score = 115 (45.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/168 (25%), Positives = 73/168 (43%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAM 289
TLF+ N+ T+E +K G V++ ++ G LS GF FV + A
Sbjct: 691 TLFIKNLNFDTTEETLKGVFSKVGA--VKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQ 748
Query: 290 AAYKRLQKPDVVFGHP------ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
A K+LQ VV GH ER K A + P K +++ P
Sbjct: 749 KALKQLQG-HVVDGHKLEVRISERATKSALNSGRHKHSPRRQTDTK-IWVRVCPFQGDSR 806
Query: 344 QIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAI 390
++++ +G++ + L + ++ T + +GF+DF T + A NA+
Sbjct: 807 ELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNAL 854
Score = 63 (27.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 159 DRDATQEDVRKVFERIGEV--IEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
DR+A + V E + + + +R+ +N N+ GY FV F+++E ++AL
Sbjct: 261 DREAAPAK-KNVMEFLAPLKPVAIRIVRNAHGNKT-GYVFVDFSSEEEVRKAL 311
Score = 59 (25.8 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 225 APSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+P DT +C +K+ +G ++ + L + G RGF FV F
Sbjct: 785 SPRRQTDTKIWVRVCPFQGDSRELKEIFNTFGE--LKTVRLPKKLTGTGTHRGFGFVDFL 842
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
DA A+ L ++G R + + +A+ P + F + PP K +
Sbjct: 843 TKQDAKRAFNALCHSTHLYG---RRLVLEWADS-EVSLPALRRKTAEHFHE--PPKKKRS 896
Query: 344 QIRDQI 349
+ D+I
Sbjct: 897 VVLDEI 902
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 147 (56.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 158
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 159 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 212
Query: 323 EIMAHV 328
I++ +
Sbjct: 213 AILSQL 218
Score = 73 (30.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 391 NNKEFSD 397
N D
Sbjct: 325 NGYRLGD 331
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 173 (66.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 69/266 (25%), Positives = 117/266 (43%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T +++++ + +G + + ++ D Q + SRGF FV +SC VDA A
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFVTYSCVEEVDA-A 66
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGVPPHWKENQIRDQ 348
R K D P+R V RE + AH VK +F+ G+ +E +R+
Sbjct: 67 MSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGIKEDTEEYNLREY 119
Query: 349 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRAR 407
+ YG + I + + + K++ + F+ F H+ + + +G N +VK +A
Sbjct: 120 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVK-KAL 176
Query: 408 LSNPMPKTQAVKG-GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRG------RG 460
M + +G G SG F +G G+ F G GR G+ R + G RG
Sbjct: 177 SKQEMQTASSQRGKGGSGNF-MGRGN---FGGGGGNFGRGGNFGGRGGYGGGGGGGGSRG 232
Query: 461 FYQHGRNHSSRMGPTEYDFDNRYTEF 486
+ G ++ G Y Y +F
Sbjct: 233 SFGGGDGYNG-FGDGNYGGSGNYNDF 257
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 47/168 (27%), Positives = 82/168 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T + +R+ FE+ G + + + ++ T R++G+ FV ++ E A++
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 211 ---EMKNPVICGKRCGTAPSEDN---------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ V+ KR ED+ +FVG I + +++ + YG
Sbjct: 70 RPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGK-- 125
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
+E I ++ D Q G RGFAFV F H VD + +QK + GH
Sbjct: 126 IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKYHTINGH 168
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 144 (55.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 46/182 (25%), Positives = 82/182 (45%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE---------HAKRA 208
+ R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ H ++
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
L M P+ + ED LFVG + T E +++ + +G ++ ++
Sbjct: 75 LPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRG- 130
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+G S+G AFV F H +A AA L + G V V FA+ +E M V
Sbjct: 131 -PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGLRRMQQV 188
Query: 329 KT 330
T
Sbjct: 189 AT 190
Score = 104 (41.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 74 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 132
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 133 GTSKGCAFVKFQTHAEAQAAINTL 156
Score = 81 (33.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 442 NGFQIGMKRLKVQLK 456
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 154 (59.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 49/172 (28%), Positives = 86/172 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + + +E+++ +F I + V L KN +TN +G AFV ++E A RA+ +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 212 MKNP-----VICGKRCGTAPSEDN---DTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ N V+ + A SE LFVG + ++ +E I++ + +GV VE+I
Sbjct: 64 LHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV--VEDIC 121
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
++ E S+G F+ F A++A L + G P V V FA+
Sbjct: 122 ILRGPNSE--SKGCGFIKFDNRESALSAIATLNGMKLD-GSPNPLV-VKFAD 169
Score = 93 (37.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
A + K ++F+G L R +E +R++FE G V ++ + + + +KG F+KF N
Sbjct: 82 ADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRG-PNSESKGCGFIKFDN 140
Query: 202 KEHAKRALTEMKNPVICG 219
+E A A+ + + G
Sbjct: 141 RESALSAIATLNGMKLDG 158
Score = 71 (30.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/75 (20%), Positives = 37/75 (49%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P ++ +N + + YG V+ + + +T K +GF+ + +A I+ +
Sbjct: 405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464
Query: 391 NNKEFSDGNSKVKLR 405
+ + + KV L+
Sbjct: 465 HGQMMAGKKLKVSLK 479
Score = 40 (19.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 440 GRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
G G +FN N G +G N+ MG
Sbjct: 293 GNNGNMYGRNFNNGNNGPMGGMNGNGMNNGGPMG 326
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 176 (67.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 68/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 259 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGSYGYNS 307
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 308 QGYGGYGGYDYTG-YNSYY 325
Score = 154 (59.3 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 40/140 (28%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + G+V++ L + T R++G+ FV F E +
Sbjct: 92 REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 152 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 209
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 210 ELPMD-NKTNKRRGFCFITF 228
Score = 40 (19.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 326 GYGDYSNQQSGYGKVSRRGGH 346
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 176 (67.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 68/259 (26%), Positives = 117/259 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH-EGLSRGFAFVMFSCHVDAMAA 291
+F+G + +W + K+ LKDY + + ++ + G SRGF FV+F
Sbjct: 97 MFIGGL--SW--DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF--------- 143
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K + D V E + +P R + VK +F+ G+ P E +IR+ G
Sbjct: 144 -KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 202
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNSKVKLRARLSN 410
+G+V I L + T KR+ + FI F E + I K++ + G SK +++ +S
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEKKYHNVGLSKCEIKVAMSK 258
Query: 411 PMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR--ANFQRGRGFYQHGRNH 468
+ Q + G GGF G +R GRG G + ++N+ +N+ +G+ +G N
Sbjct: 259 EQYQQQQ-QWGSRGGFA---GRAR-----GRGGGPS-QNWNQGYSNYWN-QGYGSYGYNS 307
Query: 469 SSRMGPTEYDFDNRYTEFH 487
G YD+ Y ++
Sbjct: 308 QGYGGYGGYDYTG-YNSYY 325
Score = 154 (59.3 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 40/140 (28%), Positives = 71/140 (50%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
++E ++FIGGL D T++D++ F + G+V++ L + T R++G+ FV F E +
Sbjct: 92 REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Query: 208 ALTE----MKNPVICGKRCGTAPSEDN-DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + VI KR +++ +FVG + +E I++ +G VE+I
Sbjct: 152 VMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE--VESI 209
Query: 263 NLVSDIQHEGLSRGFAFVMF 282
L D RGF F+ F
Sbjct: 210 ELPMD-NKTNKRRGFCFITF 228
Score = 40 (19.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 429 GHGS-SRTFSRYGRGSGRAGH 448
G+G S S YG+ S R GH
Sbjct: 326 GYGDYSNQQSGYGKVSRRGGH 346
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 174 (66.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 63/256 (24%), Positives = 112/256 (43%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 78
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 79 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 191
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF---YQ-HGR 466
M + Q+ + G G F G G SR +G G G + + GRGF Y +G
Sbjct: 192 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGFGDGYNGYGG 248
Query: 467 NHSSRMGPTEY-DFDN 481
G Y DF N
Sbjct: 249 GPGGNYGSGNYNDFGN 264
Score = 156 (60.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 51/202 (25%), Positives = 95/202 (47%)
Query: 135 RRELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
++ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R
Sbjct: 1 QKTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 59
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNIC 239
++G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 60 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 119
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQK 297
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 120 EDTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQK 172
Query: 298 PDVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 173 YHTINGHNAEVRKALSRQEMQE 194
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 147 (56.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 158
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 159 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 212
Query: 323 EIMAHV 328
I++ +
Sbjct: 213 AILSQL 218
Score = 73 (30.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 391 NNKEFSD 397
N D
Sbjct: 338 NGYRLGD 344
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 176 (67.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 65/254 (25%), Positives = 116/254 (45%)
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+MK+ V R ++ LFVG + T E +G E V+++ + I
Sbjct: 48 QMKHSV--DHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFG-EVVDSVIMTDRIT- 103
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
G RGF FV F+ D+ A K L++ V+ +R V + P + D +I A KT
Sbjct: 104 -GNPRGFGFVTFA---DSAVAEKVLEEDHVI---DDRKVDLKRTLPRGDKDTDIKAVSKT 156
Query: 331 --VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+F+ G+PP +E+++++ YGD+I + + T + + +GF+ F T ++
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV----- 211
Query: 389 AINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 448
++ FSDG KV + + + + G FR +G+S + + SG+A
Sbjct: 212 ---DRLFSDG--KVHELGDKQVEIKRAEPKRTGRDNSFR-SYGASGKYDQEDSYSGKANE 265
Query: 449 HFNRANFQRGRGFY 462
++ + G G Y
Sbjct: 266 DYSMYSGYGGYGGY 279
Score = 136 (52.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 51/180 (28%), Positives = 85/180 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GG+ + T E F + GEV++ + + T +G+ FV FA+ A++ L E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 212 MKNPVICGKRCG---TAPSEDNDT----------LFVGNICNTWTKEAIKQKLKDYGVEG 258
+ VI ++ T P D DT +FVG + ++ +K YG +
Sbjct: 127 --DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG-DI 183
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+E+ ++ D H G SRGF FV F D++ RL V ++ V++ AEP R
Sbjct: 184 IEH-QIMYD-HHTGRSRGFGFVTFQTE-DSV---DRLFSDGKVHELGDKQVEIKRAEPKR 237
Score = 45 (20.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 421 GMSGGFRIGHGSSRTFSRYGRGSGRAGH-HFNRANFQRGRGFYQHGRNHSS 470
G GG+ G+G G G+G G+ H Y G++H +
Sbjct: 295 GYGGGYGYGYGYGGQMFNMGYGAG--GYSHMGSGYGVAAAAAYGGGKSHGN 343
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 424 GGFRIGHGSSRTFSRYGRGSGRAG 447
GG + HG+ S G+G+G G
Sbjct: 336 GGGK-SHGNGNNGSSSGKGNGTNG 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 147 (56.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 158
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 159 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 212
Query: 323 EIMAHV 328
I++ +
Sbjct: 213 AILSQL 218
Score = 73 (30.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 391 NNKEFSD 397
N D
Sbjct: 339 NGYRLGD 345
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 176 (67.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 57/253 (22%), Positives = 122/253 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T++ + + F +G V+ +R+ ++ ++R+ GY +V F A++AL M
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKL--KDYGVEG-VENINLVS 266
+I GK S+ + L I N + K ++I K + + G + + +++
Sbjct: 72 NFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMT 131
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM- 325
D EG S+G+ FV + D AA + +++ + + T+ VA + ++ + E+
Sbjct: 132 D--EEG-SKGYGFVHYQ---DQRAADRAIEEMNGKLLR-DSTLFVARFKSRKDREAELRE 184
Query: 326 --AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
A V++ + +R YG + + + ++ S K K +GF+ F +H+AA
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDAS-GKSKRFGFVSFDSHKAA 243
Query: 384 VACINAINNKEFS 396
+ +N ++ +
Sbjct: 244 KNAVEDMNGRDIN 256
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 157 (60.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 53/187 (28%), Positives = 93/187 (49%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRAL 209
++F+G + R +++D+R++FE+ G V E+ + ++ S N ++KG FV F ++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 210 TEMKN-PVICGK----RCGTAPSEDNDT-----LFVGNICNTWTKEAIKQKLKDYGVEGV 259
+ N V+ G + A SE N+ LF+G I T+ I+ +G +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--I 134
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
E ++ +GLSRG AFV F+ A A K + + + G V V FA+ ++
Sbjct: 135 EECRILRG--PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV-VKFADTQKD 191
Query: 320 PDPEIMA 326
+ + MA
Sbjct: 192 KEQKRMA 198
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 45/178 (25%), Positives = 77/178 (43%)
Query: 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD-IQHEGLSRGFAFVMFSC 284
P D +FVG + TW+++ +++ + YG V IN++ D Q+ S+G FV F
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 285 HVDAMAAYKRLQKPDVVFG--HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 342
A+ A L V+ G HP + +K A +E + + +F+ + E
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQ-MKPADSEKNNAVED------RKLFIGMISKKCTE 121
Query: 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400
N IR +G + + R R F+ F+T A I A++ + +G S
Sbjct: 122 NDIRVMFSSFGQIEECRILRGPDGLSR-GCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178
Score = 67 (28.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 16/83 (19%), Positives = 38/83 (45%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + + + +G+V+ + + T K +GF+ + +A A I ++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 391 NNKEFSDGNSKVKLRARLSNPMP 413
N + KV+L+ ++ P
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSKP 485
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 166 (63.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 61/255 (23%), Positives = 111/255 (43%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
T P E LF+G + T E +K + +G + ++ ++ D + + SRGF F+ +S
Sbjct: 25 TEP-EHMRKLFIGGLDYRTTDENLKAHFEKWG--NIVDVVVMKDPRTKR-SRGFGFITYS 80
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKE 342
H +M + +P + G R V+ A P ++ D P A VK +F+ + E
Sbjct: 81 -H-SSMIDEAQKSRPHKIDG---RVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDE 135
Query: 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402
IRD + +G+++ I + + T K++ + F++F ++ + K+ V
Sbjct: 136 QSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVD---KVVLQKQHQLNGKMV 192
Query: 403 KLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFY 462
++ L PK +GG GG R G G +R G G G+ N+ G +
Sbjct: 193 DVKKAL----PKQNDQQGG--GGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNW 246
Query: 463 QHGRNHSSRMGPTEY 477
+ R + G +
Sbjct: 247 GNNRGGNDNWGNNSF 261
Score = 158 (60.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 49/171 (28%), Positives = 93/171 (54%)
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D + EH ++FIGGLD T E+++ FE+ G +++V + K+ T R++G+ F+ ++
Sbjct: 21 QDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80
Query: 201 NK---EHAKRALT-EMKNPVICGKRCGTAPSEDNDT---------LFVGNICNTWTKEAI 247
+ + A+++ ++ V+ KR P +D D+ LFVG + + +++I
Sbjct: 81 HSSMIDEAQKSRPHKIDGRVVEPKRA--VPRQDIDSPNAGATVKKLFVGALKDDHDEQSI 138
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQ 296
+ + +G + +IN+V D + G RGFAFV F + VD + K+ Q
Sbjct: 139 RDYFQHFG--NIVDINIVID-KETGKKRGFAFVEFDDYDPVDKVVLQKQHQ 186
Score = 58 (25.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 18/68 (26%), Positives = 25/68 (36%)
Query: 420 GGMSGGFRIGHGSSRTFS----RYGRGSGRAGHHFNRANFQ--RGRGFYQHGRNHSSRMG 473
G GG + F YG G R G +FN Q +G G ++ G + G
Sbjct: 291 GNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYG 350
Query: 474 PTEYDFDN 481
F+N
Sbjct: 351 GNNQGFNN 358
Score = 52 (23.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 527 GPDRGYGEHHSYRRQPFSQGEDF 549
GP RG G ++ R QP+ G F
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGF 339
Score = 46 (21.3 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 414 KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 449
+ Q +GG GGF+ G G+ + +G G++
Sbjct: 329 RMQPYQGG--GGFKAGGGNQGNYGGNNQGFNNGGNN 362
Score = 41 (19.5 bits), Expect = 6.0e-10, Sum P(3) = 6.0e-10
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 420 GGMSGGFRIGHGSSRTFSRY--GRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGP 474
GG GG+ G+ S + + G G G G N N G F + +N+ GP
Sbjct: 265 GGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWN-NGGNDFGGYQQNYGG--GP 318
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 59/250 (23%), Positives = 112/250 (44%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ ++ R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI G+ S+ + L + N + K ++I K NI +
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E SRG FV F AA + +Q + + + +R V V + +E + E A
Sbjct: 133 DENGSRGHGFVHFETQE---AATRAIQTMNGMLLN-DRKVFVGHFKSRKEREAEFGARAM 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ +N++R+ +G + + + + T + K +GF++F HE A
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKA 247
Query: 387 INAINNKEFS 396
+ +N KE +
Sbjct: 248 VADMNGKEIN 257
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 59/250 (23%), Positives = 113/250 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F AA + + K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETQE---AAERAIDKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + + + + K + +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N K+ +
Sbjct: 248 VDDMNGKDLN 257
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 173 (66.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGR--GFY 462
+ S+ ++ + G GG G G + F R G SGR G +R G G Y
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGGSY 244
Query: 463 QH-GR--NHSSRMGP 474
G N SS GP
Sbjct: 245 NDFGNYNNQSSNFGP 259
Score = 143 (55.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 55 (24.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 21/57 (36%), Positives = 24/57 (42%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRM-GP 474
+GG G R G G SR YG GSG + + F N Q G N R GP
Sbjct: 218 RGGNFSG-RGGFGGSRGGGGYG-GSGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP 272
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 288 GYGGSSSSSSYGSG 301
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 179 (68.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 57/247 (23%), Positives = 112/247 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L + +++ + ++F ++G V +R+ ++ +T R+ YA+V + N A+RAL +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
N I GK C S+ + +L + N + K + I K NI +
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVT 131
Query: 270 HEG-LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+G S+GF FV + +A K + K + + + ++ F P +
Sbjct: 132 DDGNSSKGFGFVHYETQE---SADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFT 188
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
VF + +Q+++ ++ YG++ I + + K K +GF +F + EAA +
Sbjct: 189 N-VFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVE 246
Query: 389 AINNKEF 395
N K F
Sbjct: 247 NENGKIF 253
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 48/270 (17%), Positives = 115/270 (42%)
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K +FI LD+ + + F G ++ ++ + N +KG+ FV +
Sbjct: 88 RDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYE 146
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQ 249
+E A +A+ ++ +I G++ P + + +F N+ + +K+
Sbjct: 147 TQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKE 206
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
L+ YG + NI +++D +G S+GF F F +A + + G P +
Sbjct: 207 LLQQYGE--ITNITIMAD--DKGKSKGFGFANFES-AEAAKNVVENENGKIFHGKP---I 258
Query: 310 KVAFAEPLREPDPEIMAHVKT------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 363
A+ E + E+ +T +++ + +++R+ +G + ++ ++
Sbjct: 259 YAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKD 318
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNK 393
K +GF+ ++ + A + +N +
Sbjct: 319 DKATTSKGFGFVCYTAPDEATRAVTEMNGR 348
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 184 (69.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 61/280 (21%), Positives = 128/280 (45%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + ++F IG+V +R+ ++ + ++ GYA+V + E ++A+ E+
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 213 K-NPVI---C----GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
NP+ C +R +A + +F+ N+ +A+ +G + + +
Sbjct: 114 NYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGK--ILSCKV 171
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PE 323
+D G S+ F FV + A AA + + ++ E V ++ RE E
Sbjct: 172 ATD--EFGQSKCFGFVHYETAEAAEAAIENVN--GMLLNDREVFVGKHISKKDRESKFEE 227
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+ A+ +++ + ++ E +G + I L ++ K K +GF++F HE+A
Sbjct: 228 MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESA 286
Query: 384 VACINAINNKEFSDGNSKV----KLRARLSNPMPKTQAVK 419
V + +N+KE + V K R RL + +AV+
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Score = 41 (19.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
N N + N ++ +R R P P+ Q + G +G +G F + G
Sbjct: 460 NGRGNAPYPGPNPQMMMRGR-GQPFPE-QWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRP 517
Query: 448 HHFNRANFQRGRGFYQHGRNHSSR 471
+ Q+ RG Y RN +S+
Sbjct: 518 QQQQQ---QQPRGGYYPNRNQTSK 538
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 145 (56.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 47/177 (26%), Positives = 88/177 (49%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ A +A T
Sbjct: 46 KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 105
Query: 212 M-KNPVICGK----RCGTAPSEDND----TLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + G + A SE LFVG + ++E + + + +GV ++
Sbjct: 106 LHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGV--IDEC 163
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
++ +G S+G AFV FS H +A AA L + G V V FA+ +E
Sbjct: 164 TVLRG--PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV-VKFADTDKE 217
Score = 90 (36.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 18/61 (29%), Positives = 38/61 (62%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
++ ++F+G L++ ++EDV ++F+ G + E + + +KG AFVKF++ A+ A
Sbjct: 132 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAA 190
Query: 209 L 209
+
Sbjct: 191 I 191
Score = 79 (32.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + + ++ +G++I + + +T + K +GF+ F +A A I A+
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 391 NNKEFSDGNSKVKLRARLSNP 411
N + KV+L+ R +P
Sbjct: 462 NGFQIGMKRLKVQLK-RPKDP 481
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 147 (56.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 129 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 186
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 187 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 240
Query: 323 EIMAHV 328
I++ +
Sbjct: 241 AILSQL 246
Score = 73 (30.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 391 NNKEFSD 397
N D
Sbjct: 366 NGYRLGD 372
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 147 (56.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 130 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 187
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 188 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 241
Query: 323 EIMAHV 328
I++ +
Sbjct: 242 AILSQL 247
Score = 73 (30.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 391 NNKEFSD 397
N D
Sbjct: 368 NGYRLGD 374
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 147 (56.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 130 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 187
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDP 322
+ G+SRG F+ F ++A A K L QKP G E + V FA P ++ +
Sbjct: 188 DQVT--GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQ 241
Query: 323 EIMAHV 328
I++ +
Sbjct: 242 AILSQL 247
Score = 73 (30.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 391 NNKEFSD 397
N D
Sbjct: 367 NGYRLGD 373
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 175 (66.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 67/238 (28%), Positives = 108/238 (45%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 81
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 82 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 133
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 191
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGF--RIGH-GSSRTFSRYGRGSGRAGH 448
+G N +VK +A M +Q +GG SG F R G+ G F R G GR G+
Sbjct: 192 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGY 248
Score = 134 (52.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR D K ++ ++FIGGL + T + +R+ FE+ G + + + ++ T R++G
Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLFVGNICN 240
+ FV ++ E A+ ++ V+ KR ED+ +FVG I
Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKE 135
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ + YG +E I ++ D Q G RGFAFV F H VD + +QK
Sbjct: 136 DTEEYNLRDYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKY 188
Query: 299 DVVFGH 304
+ GH
Sbjct: 189 HTINGH 194
Score = 57 (25.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 421 GMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFD 480
G GG G G + SR G G G G+ + G G Y G N G Y
Sbjct: 270 GGDGG-NYGGGPGYS-SRGGYGGGGPGYGNQGGGYGGGGGGYD-GYNEGGNFGGGNYGGG 326
Query: 481 NRYTEF 486
Y +F
Sbjct: 327 GNYNDF 332
Score = 56 (24.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG R G+G SR G G G++ F G Y G +SSR G
Sbjct: 238 RGGNFGG-RGGYGGGGGGSRGSYGGGDGGYN----GFGGDGGNYGGGPGYSSRGG 287
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 144 (55.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 46/182 (25%), Positives = 82/182 (45%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE---------HAKRA 208
+ R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ H ++
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
L M P+ + ED LFVG + T E +++ + +G ++ ++
Sbjct: 151 LPGMNRPIQVKPADSESRGEDRK-LFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRG- 206
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+G S+G AFV F H +A AA L + G V V FA+ +E M V
Sbjct: 207 -PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGLRRMQQV 264
Query: 329 KT 330
T
Sbjct: 265 AT 266
Score = 104 (41.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
TL R + D + + E ++F+G L + T EDVRK+FE G + E + +
Sbjct: 150 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PD 208
Query: 189 NRNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 209 GTSKGCAFVKFQTHAEAQAAINTL 232
Score = 81 (33.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 515
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 516 NGFQIGMKRLKVQLK 530
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 142 (55.0 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 44/175 (25%), Positives = 85/175 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA---KRA 208
++FIG + R+ ++D++ +FE+ G++ E+ + K+ T +KG AF+ + +E A + A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 209 LTEMKNPVICGKRCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
L E K + P++ LFVG + + +++ + +G +E +
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG--SIEECTV 125
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
+ +G S+G AFV + + +A AA L + G V V FA+ +E
Sbjct: 126 LRG--PDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLV-VKFADTEKE 177
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 130 TLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
TL R + D + + + ++F+G L + + DVRK+FE G + E + +
Sbjct: 73 TLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRG-PDG 131
Query: 190 RNKGYAFVKFANKEHAKRALTEM 212
+KG AFVK+ + A+ A++ +
Sbjct: 132 ASKGCAFVKYQSNAEAQAAISAL 154
Score = 80 (33.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + ++++ +G+VI + + +T + K +GF+ F +A A I A+
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 429 NGFQIGMKRLKVQLK 443
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 145 (56.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM----- 212
L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 213 --KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
K + R +A D + L+V + T T++ ++Q YG I LV +
Sbjct: 106 QTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVT- 162
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDPEIMAH 327
G+SRG F+ F ++A A K L QKP G E + V FA P ++ + I++
Sbjct: 163 -GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQAILSQ 217
Query: 328 V 328
+
Sbjct: 218 L 218
Score = 73 (30.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 391 NNKEFSD 397
N D
Sbjct: 338 NGYRLGD 344
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 145 (56.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM----- 212
L ++ TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 213 --KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
K + R +A D + L+V + T T++ ++Q YG I LV +
Sbjct: 106 QTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVT- 162
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAE-PLREPDPEIMAH 327
G+SRG F+ F ++A A K L QKP G E + V FA P ++ + I++
Sbjct: 163 -GISRGVGFIRFDKRIEAEEAIKGLNGQKPP---GATE-PITVKFANNPSQKTNQAILSQ 217
Query: 328 V 328
+
Sbjct: 218 L 218
Score = 73 (30.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 391 NNKEFSD 397
N D
Sbjct: 338 NGYRLGD 344
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 146 (56.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 50/185 (27%), Positives = 90/185 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L + TQE+++ +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 129 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 186
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAEPLREPDPE 323
+ G+SRG F+ F ++A A K L QKP P TVK A P ++ +
Sbjct: 187 DQVT--GMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAAT-EPI-TVKFA-NNPSQKTNQA 241
Query: 324 IMAHV 328
I++ +
Sbjct: 242 ILSQL 246
Score = 73 (30.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 391 NNKEFSD 397
N D
Sbjct: 367 NGYRLGD 373
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 178 (67.7 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 62/251 (24%), Positives = 119/251 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++IG L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQK-LKD-YGVEG-VENINLVS 266
VI G+ S+ + L + N + K ++I K L D + G + + +V
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D E SRG+ FV F AA + +Q + + + +R V V + RE + E A
Sbjct: 133 D---EYGSRGYGFVHFETQE---AANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 327 HVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V V++ + ++++ +G+ + + + + S + + +GF+++ HE A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEA 244
Query: 384 VACINAINNKE 394
+ +N KE
Sbjct: 245 QKAVTEMNGKE 255
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 174 (66.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 69/253 (27%), Positives = 114/253 (45%)
Query: 219 GKRC--GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLS 274
G+R G P E LF+G + T +++++ + +G + + ++ D Q + S
Sbjct: 17 GRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-S 73
Query: 275 RGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKT 330
RGF FV +SC VDA A R K D P+R V RE + AH VK
Sbjct: 74 RGFGFVTYSCVEEVDA-AMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKK 125
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 126 IFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--V 183
Query: 391 NNKEFSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
+G N +VK +A M +Q +GG SG F +G G+ F G GR G
Sbjct: 184 QKYHTINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN---FGGGGGNFGRGG 238
Query: 448 HHFNRANFQRGRG 460
+ R + G G
Sbjct: 239 NFGGRGGYGGGGG 251
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 58/198 (29%), Positives = 88/198 (44%)
Query: 274 SRGFAFVMFSCHVDAMAAYK-RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKT 330
SRGF FV +SC + AA R K D P+R V RE + AH VK
Sbjct: 73 SRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKK 125
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ G+ +E +R+ + YG + I + + + K++ + F+ F H+ + +
Sbjct: 126 IFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--V 183
Query: 391 NNKEFSDG-NSKVKLRARLSNPMP--KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
+G N +VK +A M +Q +GG SG F +G G+ +G G G G
Sbjct: 184 QKYHTINGHNCEVK-KALSKQEMQTASSQRGRGGGSGNF-MGRGN------FGGGGGNFG 235
Query: 448 HHFNRANFQRGRGFYQHG 465
NF GRG Y G
Sbjct: 236 RG---GNFG-GRGGYGGG 249
Score = 139 (54.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 51/192 (26%), Positives = 93/192 (48%)
Query: 131 LEDERRELNAIAKDRKIKKEHEI---FIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
+ED +R+ ++ + K+ ++ FIGGL + T + +R+ FE+ G + + + ++
Sbjct: 10 VEDYKRKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 69
Query: 188 TNRNKGYAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDN---------DTLF 234
T R++G+ FV ++ E A++ ++ V+ KR ED+ +F
Sbjct: 70 TKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIF 127
Query: 235 VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAY 292
VG I + +++ + YG +E I ++ D Q G RGFAFV F H VD +
Sbjct: 128 VGGIKEDTEEYNLREYFEKYGK--IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV-- 182
Query: 293 KRLQKPDVVFGH 304
+QK + GH
Sbjct: 183 --VQKYHTINGH 192
Score = 99 (39.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 18/71 (25%), Positives = 41/71 (57%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+GG+ D + ++R+ FE+ G++ + + ++ + + +G+AFV F + + + + +
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Query: 212 MKNPVICGKRC 222
K I G C
Sbjct: 185 -KYHTINGHNC 194
Score = 63 (27.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 23/69 (33%), Positives = 27/69 (39%)
Query: 418 VKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY 477
VKGG GG G+GS YG G G G+ + G G Y G N G Y
Sbjct: 271 VKGGNYGGGP-GYGSR---GGYGGGGG-PGYGNPGGGYGGGGGGYD-GYNEGGNFGGGNY 324
Query: 478 DFDNRYTEF 486
Y +F
Sbjct: 325 GGSGNYNDF 333
Score = 62 (26.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 437 SRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
S+ GRG G +G+ R NF G G + G N R G
Sbjct: 210 SQRGRGGG-SGNFMGRGNFGGGGGNFGRGGNFGGRGG 245
Score = 47 (21.6 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGH-HFNRANFQRGRGFYQHGRNHSSRMGP 474
+GG GG G G SR +G G G G N+ G G+ G + GP
Sbjct: 243 RGGYGGGG--GGGGSR--GSFGGGDGYNGFGDVKGGNYGGGPGYGSRG-GYGGGGGP 294
Score = 46 (21.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 416 QAVKGGMSGGFRIGHGSSRT--FSRYGRGSGRAGH 448
Q+ G M GG G SS + YG GSG G+
Sbjct: 341 QSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGY 375
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 141 (54.7 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 46/180 (25%), Positives = 82/180 (45%)
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA---LTEMKN 214
+ R ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ A +A L E K
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 215 PVICGKRCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ P++ LFVG + T E +++ + +G ++ ++
Sbjct: 76 LPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRG--P 131
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+G S+G AFV F H +A AA L + G V V FA+ +E M V T
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLV-VKFADTEKERGLRRMQQVAT 190
Score = 110 (43.8 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 130 TLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
TL R + D + + + ++F+G L + T EDVRK+FE G + E + +
Sbjct: 75 TLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDG 133
Query: 190 RNKGYAFVKFANKEHAKRALTEM 212
+KG AFVKF A+ A+ +
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTL 156
Score = 81 (33.6 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + +++I +G VI + + +T + K +GF+ F +A A I A+
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 391 NNKEFSDGNSKVKLR 405
N + KV+L+
Sbjct: 443 NGFQIGMKRLKVQLK 457
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 147 (56.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 47/177 (26%), Positives = 89/177 (50%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R+ ++D++ +FE+ G + E+ + K+ T +KG AF+ + ++ A +A T
Sbjct: 46 KLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 105
Query: 212 M-KNPVICGK----RCGTAPSEDND----TLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+ + + G + A SE LFVG + ++E + + + +GV ++
Sbjct: 106 LHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGV--IDEC 163
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
++ +G S+G AFV FS H +A AA L + G V V FA+ +E
Sbjct: 164 TVLRG--PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV-VKFADTDKE 217
Score = 90 (36.7 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 18/61 (29%), Positives = 38/61 (62%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
++ ++F+G L++ ++EDV ++F+ G + E + + +KG AFVKF++ A+ A
Sbjct: 132 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAA 190
Query: 209 L 209
+
Sbjct: 191 I 191
Score = 75 (31.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + + ++ +G++I + + +T + K +GF+ F +A I A+
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 461
Query: 391 NNKEFSDGNSKVKLRARLSNP 411
N + KV+L+ R +P
Sbjct: 462 NGFQIGMKRLKVQLK-RPKDP 481
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 151 (58.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 48/177 (27%), Positives = 88/177 (49%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R + D R++FE+ G V + ++ ST +KG FV F +++ A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 212 MKN-PVICGK----RCGTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ N VI G + A +E+ + LF+G + +E +++ +G +E+ ++
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFG--HIEDCSV 173
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
+ D +G SRG AFV F+ A+ A K + + G V V FA+ ++ D
Sbjct: 174 LRD--QDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLV-VKFADTQKDKD 227
Score = 96 (38.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
D + + E ++FIG L + +E++R++F + G + + + ++ +++G AFV F N+
Sbjct: 135 DTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRS 193
Query: 204 HAKRALTEM 212
A A EM
Sbjct: 194 CAVVATKEM 202
Score = 73 (30.8 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 16/81 (19%), Positives = 39/81 (48%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ +P + ++ + + +G ++ + + T K +GF+ + ++A I+A+
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 391 NNKEFSDGNSKVKLRARLSNP 411
N + KV+L+ NP
Sbjct: 565 NGFQIGSKRLKVQLKVDRGNP 585
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 127 (49.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
+ I++G L T++ +R F G + + L K+ S ++KGYAF+++ N+E A +AL
Sbjct: 587 QSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDAS-GKSKGYAFIEYDNQESAAKAL 645
Query: 210 TEMKNPVICGK 220
M N V+CG+
Sbjct: 646 QSMTNYVMCGR 656
Score = 119 (46.9 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N A I + I+IG ++ + T++ VR +F + G VI L +N T ++KG+ FV
Sbjct: 757 NESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVD 816
Query: 199 FANKEHAKRALTEMKNPVICGK 220
F K+ A A+ M + G+
Sbjct: 817 FELKKSADDAIATMNGFELLGR 838
Score = 104 (41.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 363
HP + +P P + +++ + + E+Q+R +G VI L +N
Sbjct: 744 HPPQHPTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQN 803
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
T K K +GF+DF ++A I +N E + KV + SN
Sbjct: 804 ADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGRPTKSSN 850
Score = 68 (29.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286
S+D ++VG++ + T++ I+ +G ++++ L D G S+G+AF+ +
Sbjct: 584 SQDQSRIYVGSLHFSLTEDVIRATFSVFG--NIKSLALGKDAS--GKSKGYAFIEYDNQE 639
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVA 312
A A + + V+ G R +KVA
Sbjct: 640 SAAKALQSMTNY-VMCG---RAIKVA 661
Score = 53 (23.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 342 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
E+ IR +G++ ++V+ + + K +I F + +AC + +N K FS
Sbjct: 965 EDDIRSGCNEFGEIEKLVIKSDSQSVKV----YILFKDLYSGMACQSKLNGKYFS 1015
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 177 (67.4 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 61/255 (23%), Positives = 114/255 (44%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R++++ T R+ GYA V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ T +A+ +G + + +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFG--NILSCKV 130
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
V D E S+G FV F AA + ++K + + + +R V V + +E + E+
Sbjct: 131 VCD---ENGSKGHGFVHFETEE---AAERAIEKMNGMLLN-DRKVFVGQFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
K V++ + + +G V+ + + + K K +GF+ F HE
Sbjct: 184 GTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE +
Sbjct: 243 DAQKAVDEMNGKELN 257
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 171 (65.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 66/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + ++ G Y DF N
Sbjct: 245 NGFGNDGNNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 63 (27.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYG-RGSGRAGHHFNRANFQRGRGFYQHGR--NHSSRMGP 474
+GG G R G G SR YG G G G + NF G + G N SS GP
Sbjct: 218 RGGNFSG-RGGFGGSRGGGGYGGSGDGYNGFGNDGNNFGGGGSYNDFGNYNNQSSNFGP 275
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 171 (65.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 63/259 (24%), Positives = 111/259 (42%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAINNKEFSDGNSKVKLRA 406
YG + I + + + K++ + F+ F H++ + + +N + K
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
Query: 407 RLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGFYQ 463
++ + ++ G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Query: 464 HGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 247 FGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 171 (65.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 67/261 (25%), Positives = 115/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEKVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H + + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 142 (55.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 47/166 (28%), Positives = 79/166 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H VD + +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDHNSVDKIV----IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 429 GHGSSRTFSRYGRG 442
G+G S + S YG G
Sbjct: 304 GYGGSSSSSSYGSG 317
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 141 (54.7 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 49/185 (26%), Positives = 88/185 (47%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQ+++R +F IGEV +L ++ + GY FV + N + A+RA+ +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 213 KNPVICGKRCGTA---PSEDN--DT-LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 266
+ K + PS + D L++ + T T++ ++ +G + N ++
Sbjct: 82 NGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFG--HIINSRVLV 139
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDVVFGHPER-TVKVAFAEPLREPDPE 323
D Q GLSRG AF+ F +A A KP G E TVK A A P + +
Sbjct: 140 D-QATGLSRGVAFIRFDKRSEAEEAIASFNGHKPP---GSSEPITVKFA-ANPNQSKNMA 194
Query: 324 IMAHV 328
+++ +
Sbjct: 195 LLSQI 199
Score = 106 (42.4 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 31/152 (20%), Positives = 69/152 (45%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K+ ++I GL R TQ+DV +F G +I R+ + +T ++G AF++F + A+ A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEA 163
Query: 209 LTEMKNPVICGK------RCGTAPSEDNDTLFVGNICNTWTKE---AIKQKLKDYGVE-- 257
+ G + P++ + + IC++ + + + + +
Sbjct: 164 IASFNGHKPPGSSEPITVKFAANPNQSKNMALLSQICHSPARRFGGPVHHQAQRFRFSPM 223
Query: 258 GVENINLVSDIQ-HEGLSRGFAFVMFSCHVDA 288
GV++++ +S + S G+ +++ DA
Sbjct: 224 GVDHMSSISSVNVASSASSGWCIFIYNLGQDA 255
Score = 74 (31.1 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+G V + + R+ +T K K +GF+ + +E A I ++N D +V + S+
Sbjct: 267 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSH 325
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 174 (66.3 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 67/261 (25%), Positives = 116/261 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 71
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 72 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 126
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQ---RGRGF 461
+ S+ ++ + G GG G G + F R G SGR G +R G G+
Sbjct: 187 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY 244
Query: 462 YQHGRNHSSRMGPTEY-DFDN 481
G + S+ G Y DF N
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGN 265
Score = 143 (55.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T E +R FE+ G + + + ++ +T R++G+ FV +A E A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 211 ---EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ V+ KR + +FVG I + ++ + YG +E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IE 132
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
I +++D + G RGFAFV F H D++ +QK V GH
Sbjct: 133 VIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVNGH 173
Score = 37 (18.1 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 532 YGEHHSYRRQPFSQGEDFDR 551
YG Y +P +QGE+ R
Sbjct: 289 YGGGGQYFAKPRNQGEESQR 308
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 164 (62.8 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC--HVDAMA 290
LF+G + T E+++ + +G + + ++ D + SRGF FV ++ VDA A
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDA-A 92
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
R K D P+R V E + P + VK +F+ G+ +E+ +RD +
Sbjct: 93 MNARPHKVDGRVVEPKRAVS---REDSQRPGAHLT--VKKIFVGGIKEDTEEHHLRDYFE 147
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI----NAIN--NKEFSDGNSKVKL 404
YG + I + + + K++ + F+ F H++ + + +N N E SK ++
Sbjct: 148 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 207
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
+ S+ ++ + G GG G G + F R G SGR G
Sbjct: 208 ASASSSQRGRSGS--GNFGGGRGGGFGGNDNFGRGGNFSGRGG 248
Score = 151 (58.2 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 51/182 (28%), Positives = 87/182 (47%)
Query: 135 RRELNAIAKDRKIKKE-HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
RR+ A K K ++ ++FIGGL + T E +R FE+ G + + + ++ +T R++G
Sbjct: 18 RRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRG 77
Query: 194 YAFVKFANKEHAKRALT----EMKNPVICGKRCGTAPSEDND-------TLFVGNICNTW 242
+ FV +A E A+ ++ V+ KR + +FVG I
Sbjct: 78 FGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDT 137
Query: 243 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
+ ++ + YG +E I +++D + G RGFAFV F H D++ +QK V
Sbjct: 138 EEHHLRDYFEQYGK--IEVIEIMTD-RGSGKKRGFAFVTFDDH-DSVDKIV-IQKYHTVN 192
Query: 303 GH 304
GH
Sbjct: 193 GH 194
Score = 66 (28.3 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 420 GGMSGGFR-IGHGSSRTFSRYGRGSGRAGHHFNR-ANFQRGRGFYQHGR--NHSSRMGP 474
GG G + G+G S ++ Y G G G+ +NF G + G N SS GP
Sbjct: 291 GGQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGGSGSNFGGGGSYNDFGNYNNQSSNFGP 349
Score = 61 (26.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 421 GMSGGFRIGHGSS-RTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDF 479
G SGG R G+GS + + G G G +G ++ N G G Y G + G + DF
Sbjct: 280 GYSGGSR-GYGSGGQGYGNQGSGYGGSGS-YDSYNNGGGGGGYGGGSGSNFGGGGSYNDF 337
Query: 480 DN 481
N
Sbjct: 338 GN 339
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGS-GRAGHHFNRA-NFQRGRGFYQHGRN 467
GG GG+ G GS F G GS G++ N++ NF +G GR+
Sbjct: 314 GGGGGGY--GGGSGSNFG--GGGSYNDFGNYNNQSSNFGPMKGGNFGGRS 359
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 424 GGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGF 461
G + G+ R+ YG G G G + +++ GR F
Sbjct: 348 GPMKGGNFGGRSSGPYGGGGGYGGSS-SSSSYGSGRRF 384
Score = 38 (18.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRG 442
G GG G+G S + S YG G
Sbjct: 361 GPYGGGG--GYGGSSSSSSYGSG 381
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 158 (60.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
DE E + I + + + ++FIGGL D +++D+ R GEV++ + + T R++
Sbjct: 12 DEFPEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSR 71
Query: 193 GYAFVKFANKEHAKRAL--TEMK--NPVICGKRCGTAPS-EDNDTLFVGNICNTWTKEAI 247
G+ FV F + E R L TE K +I KR E +FVG + T+E +
Sbjct: 72 GFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSPDITEEQL 131
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
++ YG +E+I L +D + RGF FV F+
Sbjct: 132 REYFGVYGE--IESIELPTDTKTNE-RRGFCFVTFA 164
Score = 151 (58.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 68/261 (26%), Positives = 113/261 (43%)
Query: 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
ED+ +F+G + +K+ + L +G V + + +D G SRGF FV+F D
Sbjct: 27 EDDGKMFIGGLSWDTSKKDLTDYLSRFGE--VLDCTIKTD-PLTGRSRGFGFVLFK---D 80
Query: 288 AMAAYKRLQ----KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
A + + L+ K D P+R + EP P K VF+ G+ P E
Sbjct: 81 AESVDRVLELTEHKLDGKLIDPKRAKAIKGKEP-----P------KKVFVGGLSPDITEE 129
Query: 344 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403
Q+R+ YG++ I L + T +R+ + F+ F+ E + N+ G+ K +
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQ---KLLENRYHQIGSGKCE 186
Query: 404 LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG-RAGHH-FNRANFQRGRGF 461
++ + + Q + GG G G R R GRG G G++ + N+ G G
Sbjct: 187 IKVAQPKEVYRQQQNRDRGFGG---GRGGFR--GRGGRGQGFNQGYNNYYGQNYGGGYGN 241
Query: 462 -YQHGRNHSSRMGPTEYDFDN 481
Y G N S + Y++ N
Sbjct: 242 GYNQGYNGYSGYDYSGYNYQN 262
Score = 117 (46.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GGL D T+E +R+ F GE+ + L + TN +G+ FV FA +E ++ L
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 212 MKNPVICGK 220
+ + GK
Sbjct: 176 RYHQIGSGK 184
Score = 52 (23.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 419 KGGMSGGFRIGHGS--SRTFSR-YGRG-----SGRAGHHFNRANFQR---GRGFYQHGRN 467
+GG GF G+ + + + YG G +G +G+ ++ N+Q G+G+ +
Sbjct: 216 RGGRGQGFNQGYNNYYGQNYGGGYGNGYNQGYNGYSGYDYSGYNYQNYGYGQGYDDYSGQ 275
Query: 468 HSSRMGPTEYDFDNRYTEF 486
SS G D N +
Sbjct: 276 QSS-YGKASRDSGNHQNSY 293
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 172 (65.6 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 68/251 (27%), Positives = 110/251 (43%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD--IQHEGL---SR 275
G P E LF+G + T +++++ + + +G E ++D + + SR
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWR-DGSEKWGTLTDCVVMRDPQTKRSR 61
Query: 276 GFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVF 332
GF FV +SC VDA A R K D P+R V RE + AH VK +F
Sbjct: 62 GFGFVTYSCEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIF 113
Query: 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 392
+ G+ E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 114 VGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQK 171
Query: 393 KEFSDG-NSKVKLRARLSNPMPKTQAVKG--GMSGGFRIGHGSSRTFSRYGRGSGRAGHH 449
+G N +VK +A M + +G G SG F +GHG + F G GR G+
Sbjct: 172 YHTINGHNCEVK-KALSKQEMQSAGSQRGCGGGSGNF-MGHGGN--FGGGGGNFGRGGNF 227
Query: 450 FNRANFQRGRG 460
R + G G
Sbjct: 228 GGRGGYGGGGG 238
Score = 100 (40.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 49/170 (28%), Positives = 79/170 (46%)
Query: 152 EIFIGGLDRDATQEDVRKVFE-------RIGEVIEVRLHKNFSTNRNKGYAFVKFANKE- 203
++FIGGL + T + +R+ FE + G + + + ++ T R++G+ FV ++ +E
Sbjct: 14 KLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEV 73
Query: 204 HAKRALTEMK--NPVICGKRCGTAPS--EDNDTLFVGNICNTWTKEAIKQ-KLKDYGVE- 257
A K V+ KR + + L V I KE + L+DY +
Sbjct: 74 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKY 133
Query: 258 G-VENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
G +E I ++ D Q G RGFAFV F H VD + +QK + GH
Sbjct: 134 GKIETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKYHTINGH 178
Score = 96 (38.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/71 (25%), Positives = 40/71 (56%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+GG+ D + ++R FE+ G++ + + ++ + + +G+AFV F + + + + +
Sbjct: 111 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 170
Query: 212 MKNPVICGKRC 222
K I G C
Sbjct: 171 -KYHTINGHNC 180
Score = 65 (27.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/67 (31%), Positives = 25/67 (37%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDF 479
GG G + G G S SR G G G G+ + G G Y G N G Y
Sbjct: 255 GGDGGNYGGGPGYS---SRGGYGGGGPGYGNQGGGYGGGAGGYD-GYNEGGNFGGGNYGG 310
Query: 480 DNRYTEF 486
Y +F
Sbjct: 311 GGNYNDF 317
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 78
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 79 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 191
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 461
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 192 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 239
Score = 156 (60.0 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 51/202 (25%), Positives = 95/202 (47%)
Query: 135 RRELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
++ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R
Sbjct: 1 QKTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 59
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNIC 239
++G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 60 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 119
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQK 297
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 120 EDTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQK 172
Query: 298 PDVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 173 YHTINGHNAEVRKALSRQEMQE 194
Score = 58 (25.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 227 RGG-SDGYGSGRGFGDGYNGYGGGPG-GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 284
Query: 478 DFDN 481
+DN
Sbjct: 285 GYDN 288
Score = 43 (20.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-D 478
GG GG G R G G G G+ + G G+ +G G Y D
Sbjct: 247 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYDNYG---GGNYGSGNYND 301
Query: 479 FDN 481
F N
Sbjct: 302 FGN 304
Score = 40 (19.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
GG G G G + YG G+ +G++ + N+ +
Sbjct: 270 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQ 307
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 171 (65.3 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 57/230 (24%), Positives = 104/230 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412
G + I + + + K++ +GF+ F H+ V I + + N++V+ +A M
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDP-VDKIVLQKHHTINGHNAEVR-KALSRQEM 193
Query: 413 PKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 461
+ Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 194 QEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
Score = 156 (60.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 136 RELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
+ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R+
Sbjct: 3 KTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 192 KGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNICN 240
+G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE 121
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 122 DTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQKH 174
Query: 299 DVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 175 HTINGHNAEVRKALSRQEMQE 195
Score = 58 (25.5 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 228 RGG-SDGYGSGRGFGDGYNGYGGGPG-GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 478 DFDN 481
+DN
Sbjct: 286 GYDN 289
Score = 43 (20.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-D 478
GG GG G R G G G G+ + G G+ +G G Y D
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYDNYG---GGNYGSGNYND 302
Query: 479 FDN 481
F N
Sbjct: 303 FGN 305
Score = 40 (19.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
GG G G G + YG G+ +G++ + N+ +
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQ 308
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 461
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
Score = 156 (60.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 51/202 (25%), Positives = 95/202 (47%)
Query: 135 RRELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
++ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R
Sbjct: 2 QKTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNIC 239
++G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 120
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQK 297
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 121 EDTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQK 173
Query: 298 PDVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 174 YHTINGHNAEVRKALSRQEMQE 195
Score = 58 (25.5 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 228 RGG-SDGYGSGRGFGDGYNGYGGGPG-GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 478 DFDN 481
+DN
Sbjct: 286 GYDN 289
Score = 43 (20.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-D 478
GG GG G R G G G G+ + G G+ +G G Y D
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYDNYG---GGNYGSGNYND 302
Query: 479 FDN 481
F N
Sbjct: 303 FGN 305
Score = 40 (19.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
GG G G G + YG G+ +G++ + N+ +
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQ 308
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 172 (65.6 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 73/285 (25%), Positives = 122/285 (42%)
Query: 137 ELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
E N K +K K +++G LD D T++ + K F G + R+ ++ T GY +
Sbjct: 5 EPNPAGKKKKYLKA-ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGY 63
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKD 253
V F A+ AL M +I GK S+ +D L + N + K ++I +
Sbjct: 64 VNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALF 123
Query: 254 YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTV-K 310
Y NI + + S+G+A+V H D++AA R V + + V +
Sbjct: 124 YLFSAFGNILSCKVVCDDNGSKGYAYV----HFDSLAAANRAIWHMNGVRLNNRQVYVGR 179
Query: 311 VAFAEP-LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
F E E A VF+ + ++++ GYG + + R+ S K
Sbjct: 180 FKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDAS-GKS 238
Query: 370 KDYGFIDFSTHEAAVACI-----NAINNKEFSDGNSKVKLRARLS 409
K +GF+ + THEAA + +IN K G ++ K+ RL+
Sbjct: 239 KGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIE-RLA 282
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 145 (56.1 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 106 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 163
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 164 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 208
Score = 70 (29.7 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 391 NNKEFSD 397
N D
Sbjct: 330 NGYRLGD 336
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 171 (65.3 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 58/232 (25%), Positives = 103/232 (44%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G V I + + + K++ +GF F H+ + + +G++ ++R LS
Sbjct: 136 GKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 412 MPKTQAVKGGMSGGFRIG--HGSSRTFSRYGRGSGRAGHHFNRANFQRGRGF 461
M + Q+ + G G F G HG F G GS G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNFGFGDSHGGGGNFGP-GPGSNFRGGSYG---YGSGRGF 240
Score = 155 (59.6 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 52/203 (25%), Positives = 94/203 (46%)
Query: 134 ERRELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
E + L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++
Sbjct: 1 EAKTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK 59
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNI 238
R++G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 60 RSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGI 119
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQ 296
+ ++ ++YG V+ I +++D Q G RGF F F H VD + LQ
Sbjct: 120 KEDTEEHHLRDYFEEYGK--VDTIEIITDRQ-SGKKRGFGFFTFDDHDPVDKIV----LQ 172
Query: 297 KPDVVFGHPERTVKVAFAEPLRE 319
K + GH K + ++E
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQE 195
Score = 53 (23.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 228 RGG-SYGYGSGRGFGDGYNGYGGGLG-GGNFGGIPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 478 DFDN 481
+DN
Sbjct: 286 GYDN 289
Score = 49 (22.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 420 GGMSG--GFRIGHGSSRTFSRYG-RGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTE 476
GG+ G G R G+G YG +G G G + N G G Y N++ + P+
Sbjct: 257 GGIPGYGGGRGGYGGGGP--GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQ--PSN 312
Query: 477 Y 477
Y
Sbjct: 313 Y 313
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 145 (56.1 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 165
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 166 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 210
Score = 70 (29.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 391 NNKEFSD 397
N D
Sbjct: 345 NGYRLGD 351
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 145 (56.1 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 165
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 166 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 210
Score = 70 (29.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 391 NNKEFSD 397
N D
Sbjct: 345 NGYRLGD 351
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 145 (56.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 170
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 171 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 215
Score = 70 (29.7 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 391 NNKEFSD 397
N D
Sbjct: 350 NGYRLGD 356
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 145 (56.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 170
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 171 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 215
Score = 70 (29.7 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 391 NNKEFSD 397
N D
Sbjct: 350 NGYRLGD 356
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 461
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
Score = 155 (59.6 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 136 RELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
+ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R+
Sbjct: 3 KTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 192 KGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNICN 240
+G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE 121
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 122 DTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQKY 174
Query: 299 DVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 175 HTINGHNAEVRKALSRQEMQE 195
Score = 58 (25.5 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 228 RGG-SDGYGSGRGFGDGYNGYGGGPG-GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 478 DFDN 481
+DN
Sbjct: 286 GYDN 289
Score = 43 (20.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-D 478
GG GG G R G G G G+ + G G+ +G G Y D
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYDNYG---GGNYGSGSYND 302
Query: 479 FDN 481
F N
Sbjct: 303 FGN 305
Score = 38 (18.4 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
GG G G G + YG G+ +G + + N+ +
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQ 308
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 424 GGFRIGHGSSRTFSRYGRGSGRAGHHFNRANF--QRGRGFYQHGRNH 468
GG G GS F Y + G NF R G G N+
Sbjct: 291 GGGNYGSGSYNDFGNYNQQPSNYGP-MKSGNFGGSRNMGGPYGGGNY 336
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 104/231 (45%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + T+E+++ + +G + + ++ D + SRGF FV FS + AA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGK--LTDCVVMRDPASKR-SRGFGFVTFSSMAEVDAAM 79
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+P + G + E +P + VK +F+ G+ +E+ +RD + Y
Sbjct: 80 AA--RPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP- 411
G + I + + + K++ +GF+ F H+ + + +G++ ++R LS
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQE 192
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRTFS-RYGRGSGRAGHHFNRANFQRGRGF 461
M + Q+ + G G F G G SR +G G G + + GRGF
Sbjct: 193 MQEVQSSRSGRGGNF--GFGDSRGGGGNFGPGPG-SNFRGGSDGYGSGRGF 240
Score = 155 (59.6 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 136 RELNAIAKDRKIKKEHE----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
+ L + +RK K+E E +FIGGL + T+E +R +E+ G++ + + ++ ++ R+
Sbjct: 3 KTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS 61
Query: 192 KGYAFVKFANKEHAKRALTEMKNPV---ICGKRCGTAPSEDNDT--------LFVGNICN 240
+G+ FV F++ A+ + + + + A E LFVG I
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE 121
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKP 298
+ ++ ++YG ++ I +++D Q G RGF FV F H VD + LQK
Sbjct: 122 DTEEHHLRDYFEEYGK--IDTIEIITDRQ-SGKKRGFGFVTFDDHDPVDKIV----LQKY 174
Query: 299 DVVFGHPERTVKVAFAEPLRE 319
+ GH K + ++E
Sbjct: 175 HTINGHNAEVRKALSRQEMQE 195
Score = 58 (25.5 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 419 KGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR-NHSSRMGPTEY 477
+GG S G+ G G ++ YG G G G+ + GRG Y G + ++ G
Sbjct: 228 RGG-SDGYGSGRGFGDGYNGYGGGPG-GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 478 DFDN 481
+DN
Sbjct: 286 GYDN 289
Score = 43 (20.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEY-D 478
GG GG G R G G G G+ + G G+ +G G Y D
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY--GGGYDNYG---GGNYGSGNYND 302
Query: 479 FDN 481
F N
Sbjct: 303 FGN 305
Score = 40 (19.1 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
GG G G G + YG G+ +G++ + N+ +
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQ 308
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 145 (56.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 158
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 159 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 203
Score = 70 (29.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 391 NNKEFSD 397
N D
Sbjct: 352 NGYRLGD 358
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 145 (56.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 158
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 159 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 203
Score = 70 (29.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 391 NNKEFSD 397
N D
Sbjct: 352 NGYRLGD 358
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 170 (64.9 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 69/252 (27%), Positives = 113/252 (44%)
Query: 223 GTAPSEDNDT--LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
G P E LF+G + T +++++ + +G + + ++ D Q + SRGF FV
Sbjct: 3 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTKR-SRGFGFV 59
Query: 281 MFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH--VKTVFLDGV 336
+SC VDA A R K D P+R V RE + AH VK +F+ G+
Sbjct: 60 TYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLTVKKIFVGGI 111
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+E +RD + YG + I + + + K++ + F+ F H+ + +
Sbjct: 112 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTI 169
Query: 397 DG-NSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRA 453
+G N +VK +A M +Q +GG SG F +G G + +G G G +F R
Sbjct: 170 NGHNCEVK-KALSKQEMQSAGSQRGRGGGSGNF-MGRGGN-----FGGGGG----NFXRG 218
Query: 454 NFQRGRGFYQHG 465
G+G Y G
Sbjct: 219 GNFGGKGXYGGG 230
Score = 132 (51.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T + +R+ FE+ G + + + ++ T R++G+ FV ++ E A+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 211 ---EMKNPVICGKRCGTAPSEDN---------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ V+ KR ED+ +FVG I + ++ + YG
Sbjct: 74 RPHKVDGRVVEPKRA--VSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK-- 129
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYKRLQKPDVVFGH 304
+E I ++ D Q G RGFAFV F H VD + +QK + GH
Sbjct: 130 IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIV----VQKYHTINGH 172
Score = 97 (39.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/71 (25%), Positives = 40/71 (56%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+GG+ D + ++R FE+ G++ + + ++ + + +G+AFV F + + + + +
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 212 MKNPVICGKRC 222
K I G C
Sbjct: 165 -KYHTINGHNC 174
Score = 71 (30.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 22/67 (32%), Positives = 26/67 (38%)
Query: 420 GGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDF 479
GG G + G GSS SR G G G G+ + G G Y G N G Y
Sbjct: 249 GGDGGNYGGGSGSS---SRGGYGGGGPGYGNQGGGYGGGGGGYD-GYNEGGNFGGGNYGG 304
Query: 480 DNRYTEF 486
Y +F
Sbjct: 305 GGNYNDF 311
Score = 48 (22.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 437 SRYGRGSGRAGHHFNRA-NFQRGRGFYQHGRNHSSR 471
S+ GRG G +G+ R NF G G + G N +
Sbjct: 190 SQRGRGGG-SGNFMGRGGNFGGGGGNFXRGGNFGGK 224
Score = 47 (21.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 419 KGGMSGGF-RIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG 473
+GG GG G G S YG G G G++ F G Y G SSR G
Sbjct: 217 RGGNFGGKGXYGGGGGGXRSSYGGGDG--GYN----GFGGDGGNYGGGSGSSSRGG 266
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 145 (56.1 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 165
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 166 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 210
Score = 70 (29.7 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 391 NNKEFSD 397
N D
Sbjct: 359 NGYRLGD 365
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 145 (56.1 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 165
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 166 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 210
Score = 70 (29.7 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 391 NNKEFSD 397
N D
Sbjct: 359 NGYRLGD 365
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 145 (56.1 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + L ++ TQE+ R +F IGE+ +L ++ T ++ GY FV + + + A++A+ +
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 213 -------KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K + R +A D + L+V + T T++ ++Q YG I LV
Sbjct: 124 NGLRLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LV 181
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPER-TVKVA 312
+ G+SRG F+ F ++A A K L QKP G E TVK A
Sbjct: 182 DQVT--GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GATEPITVKFA 226
Score = 70 (29.7 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + P E+ + +G V + + R+ +T K K +GF+ + ++ A I ++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 391 NNKEFSD 397
N D
Sbjct: 361 NGYRLGD 367
WARNING: HSPs involving 764 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 650 551 0.00097 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1014
No. of states in DFA: 614 (65 KB)
Total size of DFA: 339 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.24u 0.10s 47.34t Elapsed: 00:00:02
Total cpu time: 47.30u 0.10s 47.40t Elapsed: 00:00:02
Start: Tue May 21 14:17:39 2013 End: Tue May 21 14:17:41 2013
WARNINGS ISSUED: 2