BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006327
(650 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/584 (65%), Positives = 461/584 (78%), Gaps = 8/584 (1%)
Query: 72 VPVDKEEDLKSKLLGENFQSELDDYGS---YEDYGDCVDYGEHDEEEFADDDMEEPADEA 128
V V+ +E+ K KL+G + Q D+YG YE+Y D VD+ +H E++F ++D EE +E
Sbjct: 261 VAVETDENNKDKLMGNDTQPVQDEYGGDEGYEEYADRVDFEDHGEDDFVEEDPEEIIEET 320
Query: 129 ETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E LE+ER+EL A+ K+RKIKKE+EIF+GGLDR+AT+EDVR+VFE IGEV+EVRLH+N +
Sbjct: 321 EALEEERKELTAVVKERKIKKEYEIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAM 380
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIK 248
+++KGYAFVKFANKEHAKR+L+EMKNPVICGKRCGTAPSEDNDTLF+GNICNTWTKEAI+
Sbjct: 381 SKSKGYAFVKFANKEHAKRSLSEMKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIR 440
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
QKLKDYGVEGVENI LV+D+QHEG SRGFAF+ FSCH DAM AYKRLQKPDVVFGHPERT
Sbjct: 441 QKLKDYGVEGVENITLVADVQHEGRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERT 500
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
KVAFAEP+REPDPE+MAHVKTVFLDG+PPHW E+++R+Q++GYG+++RIVLARNMSTAK
Sbjct: 501 AKVAFAEPIREPDPEVMAHVKTVFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAK 560
Query: 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRI 428
RKD+GF+DFS+HEAA+ACI INN E DGNSK +++ARLSNPMPKTQAVKGGM GGF I
Sbjct: 561 RKDFGFVDFSSHEAAIACIERINNAELGDGNSKTRVKARLSNPMPKTQAVKGGMCGGFLI 620
Query: 429 GHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHG 488
S T SR+GR GR GHHFN NFQRGRGFY GR SSRMG EYDF+NRY F+G
Sbjct: 621 DRTGSGTSSRFGRSFGRGGHHFNWGNFQRGRGFYHRGRGQSSRMGSNEYDFNNRYNPFYG 680
Query: 489 RQFIGR--GGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQG 546
RQ G+ RGGY R +G GPSR+N R W D P+RG+G+H S RRQPFS
Sbjct: 681 RQITGQGGRRGPPRGGYYPAGRGVSGTGPSRTNFNRPWYDAPERGHGDHPSSRRQPFSPE 740
Query: 547 EDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGS 606
F R ++GR DDPY DD AHG+KR F++ DH+PDY P R RPRLDY+DP +PF +
Sbjct: 741 AAFHRSYVGRNFDDPYLCDDGAHGMKRPFYMTDHDPDYAEPSRHRPRLDYSDPAVPFREA 800
Query: 607 HHHDNVGACSNHYSDDYHVPNYGAHPPYPPYYGDDRLYGGGYFY 650
H+HD GA + YS Y+ P+ GA PPYY D Y GGY+Y
Sbjct: 801 HYHDMYGAGGDPYSHGYYGPDSGAQ---PPYYRGDGPYRGGYYY 841
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/611 (60%), Positives = 449/611 (73%), Gaps = 14/611 (2%)
Query: 48 KEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCV- 106
++E D+ E+ +++ ++ + ET +E+ KS + Q + +D +D G+ +
Sbjct: 349 EQEGDKGKEKLKVQELEKAKGEETYLSGHKENTKSFGVEVKAQMQKEDANPIKDDGEGLQ 408
Query: 107 -----DYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRD 161
D GE + E ++D EEP +E LE+E REL AIA RKIKKEHEIF+GGLDRD
Sbjct: 409 SCEKYDLGEQGKVELVEEDPEEPPEETLALEEEHRELEAIANQRKIKKEHEIFVGGLDRD 468
Query: 162 ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221
AT+ED+RKVF+RIGE++EVRLHKN STN+NKGYAFVKFANKE+AK+AL+EMKNPVI GKR
Sbjct: 469 ATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEMKNPVIHGKR 528
Query: 222 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281
CGTAPSEDNDTLF+GNICNTWTKEAIKQKLKDYG+EGVE+I LV D+QHEGLSRGFAF+
Sbjct: 529 CGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRGFAFLE 588
Query: 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341
FSCH DAM A+KRLQKPDV+FGH ERT KVAFAEP+ EPDPEIMA VK+VF++G+PPHW
Sbjct: 589 FSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINGLPPHWD 648
Query: 342 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401
E+ +R+ K YG+++RIVLARNMS+AKRKDYGF+DFSTHEAAVAC++ +N E DG SK
Sbjct: 649 EDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASK 708
Query: 402 VKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHF-NRANFQRGRG 460
+K+RARLSNP+PKTQAVKGGMSGGFRI H S FSR GRG GR F NR NF RGR
Sbjct: 709 IKVRARLSNPLPKTQAVKGGMSGGFRISHARSGAFSRPGRGFGRGRQPFNNRGNFNRGRS 768
Query: 461 FYQHGRNHSSRMG-PTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSN 519
FY+ G + RMG ++DF + + +F RQF +G + RGG+ A SR AA AGPSR
Sbjct: 769 FYRGGHSQIGRMGFRDDHDF-SMHPDFRQRQFGPQG--AVRGGHYAGSRGAAFAGPSRPY 825
Query: 520 PTRLWPDGPDRGYGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMD 579
R W PD G E RR P+S G FD PF+GR DDPY YDD G+KR F++ D
Sbjct: 826 HDRAWYGIPDGGPSEPIPPRR-PYSPGGQFDMPFMGRHFDDPYLYDDNMQGMKRPFYMTD 884
Query: 580 HEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPYPPYYG 639
EPDYMGP R RPRLDY DP I F G+HHHD+ GA S Y DY+ +YG Y YYG
Sbjct: 885 PEPDYMGPTRLRPRLDYADPPI-FPGTHHHDSFGAGSRQYPPDYYGSDYG-RGSYSSYYG 942
Query: 640 DDRLYGGGYFY 650
D +G GY+Y
Sbjct: 943 GDGSHGHGYYY 953
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/654 (58%), Positives = 463/654 (70%), Gaps = 47/654 (7%)
Query: 22 DSSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEE-EELENVDDKEEPETVPVDKEEDL 80
D+S+ +E + VAK D E I KE D + E EE+++V+DKEE + V+ E +
Sbjct: 196 DTSEHEEIVALNVAKSPDNGE-ISIAKEVPDVNEELGEEIKHVEDKEETKNEQVNMEAET 254
Query: 81 KSKLLGENFQSELDDYGSYEDYGD-CVDYGEHDEEEFAD-----DDMEEPADEAETLEDE 134
+GE+ + D Y YGD +DYG+ + E + D +P +E E LE+E
Sbjct: 255 NEARVGEDAPVKEDKY-----YGDEVMDYGDEEGLEEPEEELPVSDAVDPGEETEALEEE 309
Query: 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
REL AIAK+RKI K HEIF+GGLDRDA +EDV+KVFERIGEV+EVRLHKN S+N+NKGY
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDY 254
AFVKFANKEHA RAL+EMKNPVICGKRCGTAPSEDN+TLF+GNICNTWTKEAIKQKLKDY
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 255 GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
G+EGV NI LV + QHEGLSRGFAF+ FSCH DAM AYKRLQKPDV+FGH ERT KVAFA
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
EPLREPDPEIMA VK+VF+DG+PPHW E+++R+Q KGYG++ RIVLARNMSTAKRKD+GF
Sbjct: 490 EPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGF 549
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF+THEAA++CI+++NN E DGNSK K++ RLSNP+PKTQAVKGG+ GGFRIGHG
Sbjct: 550 VDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHGGVG 609
Query: 435 TFSR-YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFH----- 487
+ S+ G GR GHHFNRA FQR RGFYQ + R+G P DFD Y EFH
Sbjct: 610 SSSKFGRGGFGRGGHHFNRAQFQRDRGFYQREYGPTGRLGFPNAPDFDGPYPEFHERHFF 669
Query: 488 ---------GRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSY 538
+ G G GGY A A P R N R DRG+G++ +
Sbjct: 670 GRGGRRGSLRGAYQGSG-----GGYPA-------AVPPRPNLDRPRHGAIDRGHGKYFPF 717
Query: 539 RRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYND 598
R+QPF EDFD F GR DDPY Y+D A G+KR F + D +P YM P RFRPRLDY+D
Sbjct: 718 RQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIKRPF-IPDWDPGYMEPSRFRPRLDYSD 776
Query: 599 PVIPFHGSHHHDNVGACSNHYSDDYHVPNY--GAHPPYPPYYGDDRLYGGGYFY 650
P + FHGS + DN A S+ YS DY+ P+Y GA YP YY DDR Y GGY+Y
Sbjct: 777 PEVDFHGSRYRDNFEAGSSLYSQDYYGPDYDRGA---YPSYYRDDRSYRGGYYY 827
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/523 (66%), Positives = 404/523 (77%), Gaps = 8/523 (1%)
Query: 130 TLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
LE+E REL AIA RKIKKEHEIF+GGLDRDAT+ED+RKVF+RIGE++EVRLHKN STN
Sbjct: 368 ALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTN 427
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
+NKGYAFVKF++KEHAK+AL+EMKNPVI GKRCGTAPSEDNDTLF+GNICNTWTKEAIKQ
Sbjct: 428 KNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQ 487
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
KLKDYG+EGVENI LV D+QHEGLS GFAF+ FSCH DAM AYKRLQKPDV+FGH ERT
Sbjct: 488 KLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTA 547
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
KVAFAEP+REPDPEIMA VK+VF++G+PPHW E+ +R+ K YG+V+RIVLARNMS+AKR
Sbjct: 548 KVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKR 607
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
KDYGF+DFSTHEAAVAC++ +N E DG SK+K+RARLSNP+PKTQAVKGGM GGF+I
Sbjct: 608 KDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFQIS 667
Query: 430 HGSSRTFSRYGRGSGRAGHHF-NRANFQRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFH 487
H S FSR GRG GR F NR NF R R FY+ G + RMG ++DF + + +F
Sbjct: 668 HARSGAFSRPGRGFGRGRQPFNNRGNFNRSRSFYRGGHSQIGRMGFQDDHDF-SMHPDFR 726
Query: 488 GRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGE 547
RQF +G + RGG+ A SR AA AGPSR R W PD G E RR +S G
Sbjct: 727 QRQFGPQG--AVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPIEPIPPRRP-YSPGG 783
Query: 548 DFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSH 607
FD P +GR DDPY YDD HG+KR F++ D EPDYMGP R RPRLDY DP I FHG+H
Sbjct: 784 QFDMPSMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPI-FHGTH 842
Query: 608 HHDNVGACSNHYSDDYHVPNYGAHPPYPPYYGDDRLYGGGYFY 650
HHD+ GA S Y DY+ +YG Y YYG D +G GY+Y
Sbjct: 843 HHDSFGAGSRQYPPDYYGSDYG-RGSYLSYYGGDGSHGHGYYY 884
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/603 (59%), Positives = 436/603 (72%), Gaps = 18/603 (2%)
Query: 22 DSSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEE-EELENVDDKEEPETVPVDKEEDL 80
D+S+ +E + VAK D E I KE D + E EE+++V+DKEE + V+ E +
Sbjct: 196 DTSEHEEIVALNVAKSXDNGE-ISIAKEVPDVNEELGEEIKHVEDKEETKNEQVNMEAET 254
Query: 81 KSKLLGENFQSELDDYGSYEDYGD-CVDYGEHDEEEFAD-----DDMEEPADEAETLEDE 134
+GE+ + D Y YGD +DYG+ + E + D +P +E E LE+E
Sbjct: 255 NEARVGEDAPVKEDKY-----YGDEVMDYGDEEGLEEPEEELPVSDAVDPGEETEALEEE 309
Query: 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
REL AIAK+RKI K HEIF+GGLDRDA +EDV+KVFERIGEV+EVRLHKN S+N+NKGY
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDY 254
AFVKFANKEHA RAL+EMKNPVICGKRCGTAPSEDN+TLF+GNICNTWTKEAIKQKLKDY
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 255 GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
G+EGV NI LV + QHEGLSRGFAF+ FSCH DAM AYKRLQKPDV+FGH ERT KVAFA
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
EPLREPDPEIMA VK+VF+DG+PPHW E+++R+Q KGYG++ RIVLARNMSTAKRKD+GF
Sbjct: 490 EPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGF 549
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+DF+THEAA++CI+++NN E DGNSK K++ RLSNP+PKTQAVKGG+ GGFRIGHG
Sbjct: 550 VDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHGGVG 609
Query: 435 TFSR-YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMG-PTEYDFDNRYTEFH--GRQ 490
+ S+ G GR GHHFNRA FQR RGFYQ + R+G P DFD Y ZFH
Sbjct: 610 SSSKFGRGGFGRGGHHFNRAQFQRDRGFYQREYGPTGRLGFPNAPDFDGPYPZFHERHFF 669
Query: 491 FIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFSQGEDFD 550
G S RG Y A P R N R DRG+G++ +R+QPF EDFD
Sbjct: 670 GRGGRRGSLRGAYQGSGGGYPAAVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFD 729
Query: 551 RPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHD 610
F GR DDPY Y+D A G+KR F + D +P YM P RFRPRLDY+DP + FHGS + +
Sbjct: 730 NSFSGRHFDDPYLYEDNARGIKRPF-IPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYRE 788
Query: 611 NVG 613
+G
Sbjct: 789 MIG 791
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 336/603 (55%), Positives = 402/603 (66%), Gaps = 85/603 (14%)
Query: 128 AETLE---DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
ETL+ DE E AIAK R+I+KEHEIF+GGLDRD T+ED++K+F+RIGEV+EVRLHK
Sbjct: 392 TETLDEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHK 451
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK 244
N ST++N+GYA V+FANKEHAK+AL+EMKNPVI GKRCGT+PSEDNDTLF+GNICNTWTK
Sbjct: 452 NSSTSKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTK 511
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
EA+KQKLKDYGVEGVENI LV D+QHEGLSRGFAF+ FSCH DAM AYKRLQKP V+FGH
Sbjct: 512 EAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGH 571
Query: 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
ERT KVAFAEP+REPDPEIMA VK+VF++G+P HW E+ +R+ +K YG++++IVLAR M
Sbjct: 572 AERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKM 631
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
ST+KRKD+GF+DFSTHEAA+AC++ +N E DG SK+KLRARLSNP+PKTQAVKGGM G
Sbjct: 632 STSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKLRARLSNPLPKTQAVKGGMCG 691
Query: 425 GFRIGHGSSRTFSR--YGRGSGRAGHHF-NRANFQRGRGFYQH-GRNHSSRMG-PTEYDF 479
G RIG S + R G G GR F NR NF RGR F H GR RMG E DF
Sbjct: 692 GLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFSRGRSFNHHGGRGQIRRMGFWDEPDF 751
Query: 480 DNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAG-AGPSRSNPTRLW---PDG-------- 527
+ + +FH RQF +G RGG+ A SR A AGPSR R W PDG
Sbjct: 752 -SMHPDFHQRQFGPQG--PMRGGHYAASRGGAPFAGPSRHYHDRAWYGIPDGGPIEPIPP 808
Query: 528 -------------PDRGYGEHHSYR-----------------------RQPFSQG----- 546
PD G GE R R+P+S G
Sbjct: 809 RRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYR 868
Query: 547 -------------------EDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGP 587
FD PF+GR VDDPY YDD G+KR FH+ D EPDY+GP
Sbjct: 869 IPDGGPGEPIPLRRPYSPGGQFDMPFMGRHVDDPYLYDDNMRGIKRPFHMTDPEPDYIGP 928
Query: 588 RRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGAHPPYPPYYGDDRLYGGG 647
RFRPR DY DP + FHG+ HHD GA + DY+ ++G PYP +YG + +G
Sbjct: 929 NRFRPRFDYADPSV-FHGTQHHDYAGAGRGQFPPDYYASDHGGA-PYPSFYGGEGPHGHR 986
Query: 648 YFY 650
Y+Y
Sbjct: 987 YYY 989
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 278/541 (51%), Positives = 350/541 (64%), Gaps = 39/541 (7%)
Query: 126 DEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN 185
D A E ER ++ +AK+R++KKE EIF+GGL+RDA +ED+R VF ++G+V++VRLHK+
Sbjct: 486 DRARVEEHERMVMSDMAKNRQLKKELEIFVGGLNRDAVEEDIRSVFGQVGDVVDVRLHKD 545
Query: 186 FSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE 245
TNRNKG+AFVKFA KE RAL EMKNP+I GKRCG A SEDNDTLF+GNICNTWTKE
Sbjct: 546 LLTNRNKGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAASEDNDTLFLGNICNTWTKE 605
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
AIK++L DYG+EGV+++ LV D Q+EG SRGFAF+ FSCH DAM A+KRLQ+PD +FGHP
Sbjct: 606 AIKKRLLDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDAMFGHP 665
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
ERT KVAFAEP++EPD E+MA VK+VF+DG+PP+W E++++D+ K YG + R+VLA NMS
Sbjct: 666 ERTAKVAFAEPIKEPDAEVMAQVKSVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMS 725
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+AKR D+GF++FSTHEAA+ACI A NN E DG SKVK+R RLSNP+PK+QAVKGGM+G
Sbjct: 726 SAKRNDFGFVNFSTHEAALACIEATNNTELGDDGKSKVKVRVRLSNPLPKSQAVKGGMTG 785
Query: 425 GFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYT 484
GFRIG+ S F+R GRG + RA F GRGF H +R G Y +N
Sbjct: 786 GFRIGY-SGFGFNRPGRGFSKGRSAPRRAGFHGGRGFSNHA---FARGGRFNYAANNNSF 841
Query: 485 EFHGRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQPFS 544
E F GR G FRGG PS G+ S G RGY RR F
Sbjct: 842 EASPSNFQGRQGSGFRGGRWQPSSVRHGSFNS----------GLGRGYPPS---RRPSFE 888
Query: 545 QGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYM--GPRRFRPRLD-YNDPVI 601
DF PF ++PY+Y D VKR + +M+ + Y GP R R R D Y P
Sbjct: 889 PEGDFGGPFD----ENPYYYADVGPCVKRPYSLMEPDLGYFEPGPPRVRSRFDHYEQPFS 944
Query: 602 ----------PFHGSH---HHDNVGACSNHYSDDYHVPNYGAHPPYPPYYGDDRLYGGGY 648
PF G H +D + N Y D + + N + Y P D+ YG G
Sbjct: 945 GGHSFDQYDQPFSGGHRFDQYDQPFSGGNRYRDSFGMENVRSRDYYGPGPAPDQ-YGRGT 1003
Query: 649 F 649
F
Sbjct: 1004 F 1004
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/284 (79%), Positives = 265/284 (93%)
Query: 131 LEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
+EDERREL A+AK+RKIKKE+EIF+GGLDRDAT+ED+RKVFE+IGEV+EVRLHKN STNR
Sbjct: 1 MEDERRELTAVAKERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNR 60
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQK 250
NKGYAFVKFA+KEH KRAL+EMKNPVI GKRCGTAPSEDNDTLF+GNICNTWTKEAI+QK
Sbjct: 61 NKGYAFVKFASKEHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQK 120
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
LKDYGVEGVENI +VSD QHEG SRGFAF+ F+CH DAM AYKRLQKPDVVFGHPERT K
Sbjct: 121 LKDYGVEGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAK 180
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
VAFAEP+REPDPEIMA VKT+FLDG+PPHW E+++R+ +KGYG+++R+VLARNMSTAKRK
Sbjct: 181 VAFAEPIREPDPEIMAQVKTIFLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRK 240
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414
D+GF+DFSTH+ AVACI INN+EF +GN+K +++ARLSNP+PK
Sbjct: 241 DFGFVDFSTHDDAVACIEGINNREFGNGNTKTRVKARLSNPLPK 284
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/635 (45%), Positives = 391/635 (61%), Gaps = 49/635 (7%)
Query: 22 DSSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDL- 80
D ++ K+ + E +++ A E+ + ++ +++ ++E+P+ V + +
Sbjct: 113 DDAQNKQDSQAETLGQGEMVAATDNSAEDKQDQLQQGQMDAEQEEEDPQEVIFEDSASVG 172
Query: 81 KSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEF-ADDDMEEPADEAETLEDERRELN 139
+ + E Q E + ED G +++E A + + A E + EDER+ ++
Sbjct: 173 EGQAATELKQGEDRARATEEDDGQAAAKSKNEEHRARAAEKHGQAAGEVKENEDERKVMS 232
Query: 140 AIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF 199
+AK+R+ KKE EIF+GGLDR+A +ED+RKVF ++G+V+EVRLHK+FST++NKG+AFV+F
Sbjct: 233 DMAKNRQRKKELEIFVGGLDREAVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRF 292
Query: 200 ANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259
ANKE RAL EMKNP+I GKRCG A SEDNDTLF+ NICNTWTKEAIK++L DYGVEGV
Sbjct: 293 ANKEQVARALAEMKNPMIHGKRCGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGV 352
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
+++ LV D Q+EG SRGFAF+ FSCH DAM A+KRLQ+PD +FGHPERT KVAFAEP++E
Sbjct: 353 QSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDALFGHPERTAKVAFAEPIKE 412
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
D E+MA VK+VF++G+PP+W E +++++ K YG + R+VLARNMS+AKR D+GF++FST
Sbjct: 413 ADAEVMAQVKSVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFST 472
Query: 380 HEAAVACINAINNKEFS-DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSR 438
HE A+ACI A NN E DG +K+K+R RLSNP+PK+QAVKG MSGGFRIGH S F+R
Sbjct: 473 HEEALACIEATNNTELGDDGKAKLKVRVRLSNPLPKSQAVKGEMSGGFRIGHPGS-GFNR 531
Query: 439 YGRGSGRAGHHFNRANFQRGRGFYQH--GRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGG 496
GRG R R F RGF H GR + F+ ++F RQ
Sbjct: 532 PGRGFNRGRAAPRREGFHGDRGFSNHTPGRGGRFNSAYSNNSFEASPSDFRARQ----AP 587
Query: 497 RSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRGYGEHHSYRRQP-FSQGEDFDRPFIG 555
+FRGG R P D DRG G + R P F DF RPF
Sbjct: 588 PAFRGG--------------RWEPYSGRHDFFDRGQGRGYPPPRGPAFEPEGDFGRPF-- 631
Query: 556 RQVDDPYFYDDRAHGVKRSFHVMDHEP-DYM--GPRRFRPRLD-YNDPVIPFHGSHHHDN 611
++PYF++D H KR + M+ P Y GP R RPR D Y+ P PF G + D
Sbjct: 632 --GENPYFHEDVRHSTKRPYSHMEPGPAGYFEPGPPRVRPRFDHYDQP--PFSGGNRFD- 686
Query: 612 VGACSNHYSD------DYHVPNYGAHPPYP-PYYG 639
HY D H ++G PY YYG
Sbjct: 687 ------HYDQPPFPGGDRHRDSFGTRGPYSRDYYG 715
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/277 (80%), Positives = 257/277 (92%)
Query: 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
L A+AK+RKIKKE+EIF+GGLDRDAT+ED+RKVFE+IGEV+EVRLHKN STNRNKGYAFV
Sbjct: 13 LTAVAKERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFV 72
Query: 198 KFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE 257
KFANK H KRAL+EMKNPVI GKRCGTAPSEDNDTLF+GNICNTWTKEAI+QKLKDYGVE
Sbjct: 73 KFANKGHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVE 132
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
GVENI +V D QHEG SRGFAF+ F+CH DAM AYKRLQKPDVVFGHPERT KVAF+EP+
Sbjct: 133 GVENITVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPI 192
Query: 318 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
REPDPEIMA VKT+FLDG+PPHW E+ +R+ +KGYG+++RIVLARNMSTAKRKD+GF+DF
Sbjct: 193 REPDPEIMAQVKTIFLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDF 252
Query: 378 STHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414
STHEAAVACI INN+EF +GN+K++++ARLSNP+PK
Sbjct: 253 STHEAAVACIEGINNREFGNGNTKMRVKARLSNPLPK 289
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/464 (55%), Positives = 327/464 (70%), Gaps = 23/464 (4%)
Query: 7 SEDKVSNYDNK--ERLGDSSKQKEPA-----LVEVAKHNDIIEAIFQYKEETDEDPEEEE 59
+E VS K E L +S K KE + EV +++E+ + + + + ++
Sbjct: 4 TESPVSEVLTKSAEELSESIKGKEKVNCGEPIEEVNADAEVLESEKESENQAENMDGVQK 63
Query: 60 LENVDDKEEPETVPVDKEEDLKSKLLGEN---FQSELDDYGSYEDYGDCVDYGEHDEEEF 116
LEN +DK+ V E+ ++ L EN +DDYG E + V+ GE D
Sbjct: 64 LENTNDKKPENIVGGQIEKADEAAQLNENDAPMSEGMDDYGDEEGF---VEPGEED---L 117
Query: 117 ADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGE 176
DDD E D+ + L +E +L A AK+RKIKKEHEIFIGGLD + +ED++ FE++GE
Sbjct: 118 RDDDDPETTDDMKVLNEENNDLAAAAKERKIKKEHEIFIGGLDCEVVEEDLKMAFEKVGE 177
Query: 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVG 236
V+EVRL K+ TN+N+G FV+FA K+ AK+AL+EMKNPVI GKRCGTA SEDNDTLF+G
Sbjct: 178 VVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSEMKNPVISGKRCGTAASEDNDTLFIG 237
Query: 237 NICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
NICNTWTKEAI +KLK+Y +EGVENI LV D +HEGLSRGF F+ F+CH DAM A+KRLQ
Sbjct: 238 NICNTWTKEAITKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQ 297
Query: 297 KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
KPDV+FGH ERTVKVAF+EPL+EPDPEIMA VK+VF+DG+PP+W E+++R +GYG++
Sbjct: 298 KPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIE 357
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
R+ LARNM AKRKD+GF+DF THEAA+ACI+ IN K+ DGNSK+K+RARLSNP+PK Q
Sbjct: 358 RVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDINKKDLVDGNSKIKVRARLSNPLPKMQ 417
Query: 417 AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 460
AVKGGM GGFRIG + GR GR G NR NFQ GR
Sbjct: 418 AVKGGMRGGFRIGRPN-------GRSLGRPGPLINRPNFQYGRA 454
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 255/464 (54%), Positives = 326/464 (70%), Gaps = 23/464 (4%)
Query: 7 SEDKVSNYDNK--ERLGDSSKQKEPA-----LVEVAKHNDIIEAIFQYKEETDEDPEEEE 59
+E VS K E L +S K KE + EV +++E+ + + + + ++
Sbjct: 4 TESPVSEVLTKSAEELSESIKGKEKVNCGEPIEEVNADAEVLESEKESENQAENMDGVQK 63
Query: 60 LENVDDKEEPETVPVDKEEDLKSKLLGEN---FQSELDDYGSYEDYGDCVDYGEHDEEEF 116
LEN +DK+ V E+ ++ L EN +DDYG E + V+ GE D
Sbjct: 64 LENTNDKKPENIVGGQIEKADEAAQLKENDAPVSEGMDDYGDEEGF---VEPGEED---L 117
Query: 117 ADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGE 176
DDD E D+ + L +E +L A AK+RKIKKEHEIFIGGLD + +ED++ FE++GE
Sbjct: 118 RDDDDPETTDDMKVLNEENNDLAAAAKERKIKKEHEIFIGGLDCEVVEEDLKMAFEKVGE 177
Query: 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVG 236
V+EVRL K+ TN+N+G FV+FA K+ AK+AL+EMKNPVI GKRCGTA SEDNDTLF+G
Sbjct: 178 VVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSEMKNPVISGKRCGTAASEDNDTLFIG 237
Query: 237 NICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
NICNTWTKEAI +KLK+Y +EGVENI LV D +HEGLSRGF F+ F+CH DAM A+KRLQ
Sbjct: 238 NICNTWTKEAINKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQ 297
Query: 297 KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
KPDV+FGH ERTVKVAF+EPL+EPDPEIMA VK+VF+DG+PP+W E+++R +GYG++
Sbjct: 298 KPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIK 357
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
R+ LARNM AKRKD+GF+DF THEAA+ACI +N K+ DGNSK+K+RARLSNP+PK Q
Sbjct: 358 RVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDVNKKDLVDGNSKIKVRARLSNPLPKMQ 417
Query: 417 AVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRG 460
AVKGGM GGFRIG + GR GR G NR NFQ GR
Sbjct: 418 AVKGGMRGGFRIGRPN-------GRSLGRPGPLINRPNFQYGRA 454
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 244/347 (70%), Gaps = 17/347 (4%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
AE ++ E E + + K+R+ +KE E+F+GGLD+DAT++D+RKVF ++GEV EVRL N
Sbjct: 209 AEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQ 268
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
T +NKG+AF++FA E AKRA+TE+KNPV+ GK+CG PS+D+DTLF+GNIC TWTKEA+
Sbjct: 269 TKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEAL 328
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
K+KLK YGVE VE++ LV D +EG++RGFAF+ FS DAM A+KRLQK DVVFG +R
Sbjct: 329 KEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGV-DR 387
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
T KV+FA+ +P EIMA VKTVF+DG+P W E+++R+ +K YG++ +I LARNM +A
Sbjct: 388 TAKVSFADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSA 447
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFR 427
KRKD+GF+ F TH+AAV C +INN E +G +K K+RARLS P+ + + K G FR
Sbjct: 448 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGENKAKVRARLSRPLQRGKG-KHISRGDFR 506
Query: 428 IGHG-------------SSRTFSRYGRGSGRAGHHFNRANFQRGRGF 461
G G + R+F GRG+ G A +R GF
Sbjct: 507 PGRGGPVRGVRGSWARPALRSFP--GRGARGLGPRLPPAAVKRPIGF 551
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 193/443 (43%), Positives = 284/443 (64%), Gaps = 30/443 (6%)
Query: 28 EPALVEVAKHNDIIEAIF------QYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
+P +VE +D+ ++ + KE DE ++E L ++DD E D
Sbjct: 55 KPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDERL-DLDDNEPEYEPEEYGGVDYD 113
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADE-------------- 127
K E ++ + G+ ED D + GE +E++ A+ +ME+ +E
Sbjct: 114 DK---ETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEE 170
Query: 128 ---AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
E ++ E + + + ++R+ +KE E+F+GGLD+D +D+RKVF ++GEV EVRL
Sbjct: 171 AERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMM 230
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK 244
N T +NKG+AF++FA E A++A+TE+KNPVI GK+CG PS+D+DTLF+GNIC TWTK
Sbjct: 231 NPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTK 290
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
EA+K+KLK YGV+ VE++ LV D +EG++RGFAF+ FS DAM A+KRLQK DV+FG
Sbjct: 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350
Query: 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
+R KV+FA+ +P EIMA VKTVF+DG+P W E+++R+ +K YG++ +I LARNM
Sbjct: 351 -DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+AKRKD+GF+ F TH+AAV C +INN E +G++K K+RARLS P+ + + K G
Sbjct: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG-KHASRG 468
Query: 425 GFRIGHGSSR-TFSRYGRGSGRA 446
FR G G+ R T +G S R+
Sbjct: 469 DFRSGRGTGRATRGSWGLPSPRS 491
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 224/290 (77%), Gaps = 1/290 (0%)
Query: 123 EPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRL 182
E AD A+ + E E + + K+R+ +KE E+F+GGLD+DAT++D+RKVF R+GEV EVRL
Sbjct: 185 EEADHAQVVNAEEEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFTRVGEVTEVRL 244
Query: 183 HKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTW 242
N T +NKG+AF++F+ E AK+A+TE+KNPVI GK+CG PS+D+DTLF+GNIC TW
Sbjct: 245 MMNPQTKKNKGFAFLRFSTVEQAKKAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTW 304
Query: 243 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
TKEA+K+KLK YGVE VE++ LV D +EG++RGFAF+ FS DAM A+KRLQK DV+F
Sbjct: 305 TKEALKEKLKHYGVENVEDVTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 364
Query: 303 GHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
G +R KV+FA+ +P EIMA VKTVF+DG+P W E+++R+ +K +G++ +I LAR
Sbjct: 365 GV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKFGEIEKIELAR 423
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412
NM +AKRKD+GF+ F +H+AAV C +INN E +G++K K+RARLS P+
Sbjct: 424 NMPSAKRKDFGFVTFDSHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 473
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 261/431 (60%), Gaps = 59/431 (13%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ K+R+ +KE E+F+GGLDRD T++D+ F ++G++ EVRL KN T +NKG+AF++FA
Sbjct: 115 LVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFA 174
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E A+RA+ E+K+PVI GK+CG APS+D+DTLFVGNIC TWTK A+K KL YGV+ E
Sbjct: 175 TVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYE 234
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ LV D ++EG++RGFAF+ FS DA+ A KRLQK DVVFG +RT +VAFA+ EP
Sbjct: 235 DLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFG-TDRTARVAFADTFIEP 293
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
D EIM+ V+T+FLDG+P W E+++RD +K +G + +I LARNM AKR D+GF+ F TH
Sbjct: 294 DDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTH 353
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 440
++AVAC+++INN E DG VK+RARLS P + ++ K GG+ + GS
Sbjct: 354 DSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHA-RGGYLVAQGS-------- 404
Query: 441 RGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSF- 499
GRGF + SSRM +F GRGGRS
Sbjct: 405 -----------------GRGFKAPWGSSSSRMDSW--------------KFTGRGGRSMQ 433
Query: 500 -RGGYNAPSRAAAG---------AGPSRSNPTRLWPDGPDRGYG------EHHSYRRQPF 543
RG Y+ + G P+R R +P P+ +G E S +R+
Sbjct: 434 TRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFP-SPESSFGRRSPVYEKSSTKREYI 492
Query: 544 SQGEDFDRPFI 554
+ E F RP +
Sbjct: 493 QRDESFSRPAV 503
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 261/431 (60%), Gaps = 59/431 (13%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ K+R+ +KE E+F+GGLDRD T++D+ F ++G++ EVRL KN T +NKG+AF++FA
Sbjct: 176 LVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFA 235
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E A+RA+ E+K+PVI GK+CG APS+D+DTLFVGNIC TWTK A+K KL YGV+ E
Sbjct: 236 TVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYE 295
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ LV D ++EG++RGFAF+ FS DA+ A KRLQK DVVFG +RT +VAFA+ EP
Sbjct: 296 DLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFG-TDRTARVAFADTFIEP 354
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
D EIM+ V+T+FLDG+P W E+++RD +K +G + +I LARNM AKR D+GF+ F TH
Sbjct: 355 DDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTH 414
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 440
++AVAC+++INN E DG VK+RARLS P + ++ K GG+ + GS
Sbjct: 415 DSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHA-RGGYLVAQGS-------- 465
Query: 441 RGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRSF- 499
GRGF + SSRM +F GRGGRS
Sbjct: 466 -----------------GRGFKAPWGSSSSRM--------------DSWKFTGRGGRSMQ 494
Query: 500 -RGGYNAPSRAAAG---------AGPSRSNPTRLWPDGPDRGYG------EHHSYRRQPF 543
RG Y+ + G P+R R +P P+ +G E S +R+
Sbjct: 495 TRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFP-SPESSFGRRSPVYEKSSTKREYI 553
Query: 544 SQGEDFDRPFI 554
+ E F RP +
Sbjct: 554 QRDESFSRPAV 564
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/293 (56%), Positives = 223/293 (76%), Gaps = 2/293 (0%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R+ +KE EIF+GGLD+DAT++D+RKVF R+GEV E RL N T +NKG+AF++FA
Sbjct: 24 KERRKRKEFEIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATV 83
Query: 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
E AKRA+TE+KNPVI GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE VE++
Sbjct: 84 EQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDL 143
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
LV D + G++RGFAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ P
Sbjct: 144 TLVEDSNNLGMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFG-VDRPAKVSFADSFIGPGD 202
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
EIMA VKT+F+DG+P W E++ R +K YG++ +I LARNM +A+RKD+GF+ F TH+A
Sbjct: 203 EIMAQVKTLFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDA 262
Query: 383 AVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 435
AVAC +INN E +G++KVK+RARLS P+ + + K G F+ GHG+SR
Sbjct: 263 AVACAKSINNVELGEGDNKVKVRARLSRPLQRGKG-KHASRGDFQSGHGASRV 314
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 164/293 (55%), Positives = 224/293 (76%), Gaps = 2/293 (0%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R+ +KE E+F+GGLD+DAT++D+RK+F R+GEV EVRL N T +NKG+AF++FA
Sbjct: 24 KERRKRKEFEVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATV 83
Query: 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
E AKRA+TE+KNPVI GK+CG PS+D+DTLF+GNIC TWTKEA+K+KLK YGVE V+++
Sbjct: 84 EQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDL 143
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
LV D + G++RGFAF+ FS DAM A+KRLQK DV+FG +R KV+FA+ +P
Sbjct: 144 TLVEDSNNAGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDPGD 202
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
EIMA VKTVF+DG+P W E+++R +K YG++ +I LARNM +A+RKD+GF+ F TH+A
Sbjct: 203 EIMAQVKTVFIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDA 262
Query: 383 AVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 435
AV C +INN E +G++K K+RARLS P+ + + K G FR G+G+SR
Sbjct: 263 AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG-KHLSRGDFRPGYGASRV 314
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 159/310 (51%), Positives = 226/310 (72%), Gaps = 1/310 (0%)
Query: 125 ADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
A+E ++ E E + + K+ + +KE E+F+GGLD+DAT+ D+RKVF +GE+ EVRL
Sbjct: 164 AEEEHNVDVEDEEHHEMVKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVRLMM 223
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK 244
N T +NKG+AF+++A E A+RA++E+KNP + GK+CG APS DNDTLFVGNIC TWTK
Sbjct: 224 NPVTKKNKGFAFLRYATVEQARRAVSELKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTK 283
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
E +K+KLK YGVE +++ LV D + G++RG+A + FS +AM A++RLQK DVVFG
Sbjct: 284 EHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGV 343
Query: 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
+R+ KV+FA+ E D EIMA V+TVF+DG+PP W E++++ +K YG + ++ LARNM
Sbjct: 344 -DRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNM 402
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
AKRKD+GF+ F TH+ AVAC + I N E +G+SK K+RARLS P+ + +K G+ G
Sbjct: 403 PAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRPLQRPPRMKHGLRG 462
Query: 425 GFRIGHGSSR 434
FR+G G+ R
Sbjct: 463 NFRVGQGAPR 472
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 165/304 (54%), Positives = 227/304 (74%), Gaps = 2/304 (0%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
AE ++ E E + + K+R+ +KE E+F+GGLD+DAT++D++KVF ++GEV EVRL N
Sbjct: 8 AEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQ 67
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
T +NKG+AF++FA E AKRA+TE+KNPV+ GK+CG PS+D+DTLF+GNIC TWTKEA+
Sbjct: 68 TKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEAL 127
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
K+KLK YGVE VE++ LV D +EG++RGFAF+ FS DAM A+KRLQ+ VFG +R
Sbjct: 128 KEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSFRSDAMDAFKRLQEERCVFG-VDR 186
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
T KV+F + +P EIMA VKTVF+DG+P W E+++R+ +K YG++ +I LARNM +A
Sbjct: 187 TAKVSFTDSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSA 246
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFR 427
KRKD+GF+ F TH+AAV C +INN E +G +K K+RARLS P+ + + K G FR
Sbjct: 247 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGENKAKVRARLSRPLQRGKG-KHISRGDFR 305
Query: 428 IGHG 431
G G
Sbjct: 306 PGRG 309
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/408 (46%), Positives = 265/408 (64%), Gaps = 35/408 (8%)
Query: 45 FQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGD 104
F+Y E+ E +E+ E VD + EPE D+E D+ + + E+ Q +L+
Sbjct: 146 FEYDEKEIE--QEDVQEVVDGEGEPEDNVGDEEGDMVEEDV-EDAQEDLE---------- 192
Query: 105 CVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQ 164
GE D+++ +D E A + EDE E + K+R+ +KE E+F+GGLD+D +
Sbjct: 193 ----GEDDDQQGGED--HEHAGMVDADEDEHHE---VVKERRKRKEFEVFVGGLDKDVKE 243
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224
ED++KVF +GEV EVRL N T +NKG+AF++FA E AKRA++E+KNPVI GK+CG
Sbjct: 244 EDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQCGV 303
Query: 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284
PS+D+DTLF+GNIC TW K+A+K+KLK YGV+ VE++ LV D +EG +RGFAF+ FS
Sbjct: 304 TPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEFSS 363
Query: 285 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 344
DAM A+KRLQK DVVFG +R KV+FA+ +P EIMA VKTVF+D +P W E
Sbjct: 364 RSDAMDAFKRLQKRDVVFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDSLPASWDEEF 422
Query: 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
+R +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV+C +INN E +G++K K+
Sbjct: 423 VRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELGEGDNKAKV 482
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR 452
RARLS P+ + + G +SRT GR +GR + R
Sbjct: 483 RARLSRPLQRGK------------GKHASRTDYWPGRTTGRVRGSWTR 518
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 189/408 (46%), Positives = 264/408 (64%), Gaps = 35/408 (8%)
Query: 45 FQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGD 104
F+Y E+ E +E+ E VD EPE D+E D+ + + E+ Q +L+
Sbjct: 146 FEYDEKEIE--QEDVQEVVDXGGEPEDNVGDEEGDMVEEDV-EDAQEDLE---------- 192
Query: 105 CVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQ 164
GE D+++ +D E A + EDE E + K+R+ +KE E+F+GGLD+D +
Sbjct: 193 ----GEDDDQQGGED--HEHAGMVDADEDEHHE---VVKERRKRKEFEVFVGGLDKDVKE 243
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224
ED++KVF +GEV EVRL N T +NKG+AF++FA E AKRA++E+KNPVI GK+CG
Sbjct: 244 EDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQCGV 303
Query: 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284
PS+D+DTLF+GNIC TW K+A+K+KLK YGV+ VE++ LV D +EG +RGFAF+ FS
Sbjct: 304 TPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEFSS 363
Query: 285 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 344
DAM A+KRLQK DVVFG +R KV+FA+ +P EIMA VKTVF+D +P W E
Sbjct: 364 RSDAMDAFKRLQKRDVVFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDSLPASWDEEF 422
Query: 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
+R +K YG++ +I LARNM +AKRKD+GF+ F TH+AAV+C +INN E +G++K K+
Sbjct: 423 VRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELGEGDNKAKV 482
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR 452
RARLS P+ + + G +SRT GR +GR + R
Sbjct: 483 RARLSRPLQRGK------------GKHASRTDYWPGRTTGRVRGSWTR 518
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/350 (47%), Positives = 238/350 (68%), Gaps = 15/350 (4%)
Query: 99 YEDYGDCVDYGE---HDEEEFADDDMEEPADEAET-----------LEDERRELNAIAKD 144
YED + V+Y E E + D++++E D+ E ++ + E N + K+
Sbjct: 146 YEDGDEEVEYTEDVVEVETDMVDEELDEGGDDVEGEGYENADEDHHVDGDDEEHNEMVKE 205
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+ +KE EIF+GGLD+DAT+ D+ KVF +GE+ EVRL N T +NKG+AF+++A E
Sbjct: 206 HRKRKEFEIFVGGLDKDATENDLMKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQ 265
Query: 205 AKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
A+RA++E+KNP++ GK+CG APS DNDTLFVGNIC TWTKE +K KLK YGVE +++ L
Sbjct: 266 ARRAVSELKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYGVESFDDLLL 325
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
D + G++RG+A + FS +AM A++ LQK DVVFG +R+ KV+FA+ + D EI
Sbjct: 326 AEDTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFADSYPQVDDEI 384
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
MA V+TVFLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AV
Sbjct: 385 MAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAV 444
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
AC ++N E +G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 445 ACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 494
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 217/294 (73%), Gaps = 1/294 (0%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ K + +KE E+F+GGLD+DAT+ D+RKVF +GE+ EVRL N T +NKG+AF++F
Sbjct: 184 MVKAHRKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 243
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E AKRA++++KNP++ GK+CG APS DNDTLFVGNIC TWTKE +K KLK Y VE +
Sbjct: 244 TVEQAKRAVSDLKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYEVENFD 303
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ LV D + G++RG+A + FS +AM A++RLQK DVVFG +RT KV+FA+ E
Sbjct: 304 DLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGV-DRTAKVSFADSYPEV 362
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
D E+MA V+TVFLDG+PP W+E++++ +K YG + ++ LARNM AKRKD+GF+ F TH
Sbjct: 363 DDEMMAQVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTH 422
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+ AVAC++ I + E +G+SK K+RARLS P+ + +K G+ G FRIGH + R
Sbjct: 423 DNAVACVDGITSSEIGEGDSKAKVRARLSRPVQRPPRMKHGLRGNFRIGHSAPR 476
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 151/294 (51%), Positives = 216/294 (73%), Gaps = 1/294 (0%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ K + +KE E+F+GGLD+DAT+ D+RKVF +GE+ EVRL N T +NKG+AF+++A
Sbjct: 189 MVKANRKRKEFEVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYA 248
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E A+RA++++KNP++ GK+CG APS DNDTLFVGNIC TWTKE +K KLK Y VE +
Sbjct: 249 TVEQARRAVSDLKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFD 308
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ LV D + G++RG+A + FS +AM A++RLQK D VFG +R+ KV+FA+ E
Sbjct: 309 DLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGV-DRSAKVSFADSYPEV 367
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
D E+MA V+T+FLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH
Sbjct: 368 DDEMMAQVRTIFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTH 427
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+ AVAC++ I + E +G+SK K+RARLS P+ + +K G+ G FRIG G+ R
Sbjct: 428 DNAVACVDGITSSEIGEGDSKAKVRARLSRPLQRPPRMKHGLRGNFRIGQGAPR 481
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 227/321 (70%), Gaps = 12/321 (3%)
Query: 125 ADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
A+E ++ E E + + K+ + +KE E+F+GGLD+DAT+ D+RKVF +GE+ EVRL
Sbjct: 109 AEEEHNVDVEDEEHHEMVKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVRLMM 168
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNP-----------VICGKRCGTAPSEDNDTL 233
N T +NKG+AF+++A E A+RA++E+KNP ++ GK+CG APS DNDTL
Sbjct: 169 NPVTKKNKGFAFLRYATVEQARRAVSELKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTL 228
Query: 234 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293
FVGNIC TWTKE +K+KLK YGVE +++ LV D + G++RG+A + FS +AM A++
Sbjct: 229 FVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFR 288
Query: 294 RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
RLQK DVVFG +R+ KV+FA+ E D EIMA V+TVF+DG+PP W E++++ +K YG
Sbjct: 289 RLQKRDVVFGV-DRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYG 347
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
+ ++ LARNM AKRKD+GF+ F TH+ AVAC + I N E +G+SK K+RARLS P+
Sbjct: 348 AIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRPLQ 407
Query: 414 KTQAVKGGMSGGFRIGHGSSR 434
+ +K G+ G FR+G G+ R
Sbjct: 408 RPPRMKHGLRGNFRVGQGAPR 428
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 223/311 (71%), Gaps = 5/311 (1%)
Query: 123 EPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRL 182
E A+ A+ E+E RE + K+R+ +KE E+F+GGLD+DAT++D+RKVF +G V EVRL
Sbjct: 190 ERAEMADVDEEEHRE---VVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRL 246
Query: 183 HKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTW 242
N T +NKG+AF++F N E AKRA+ E+KNPVI GK+CG PS+D+DTL++GNIC TW
Sbjct: 247 MMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTW 306
Query: 243 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
TKEA+K+KLK YGV VE+I LV D +G +RGFAF+ FS DAM A+KRLQK DV F
Sbjct: 307 TKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTF 366
Query: 303 GHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
G ++ KV+FA+ +P EIM+ VKTVF+D +PP W E+ +R+ +K YG+V +I LAR
Sbjct: 367 GV-DKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELAR 425
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGM 422
NM A+RKDYGF+ F +H+AA+ C ++I E +G+ K K+RARLS P+ + + G
Sbjct: 426 NMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVG- 484
Query: 423 SGGFRIGHGSS 433
G +R GS+
Sbjct: 485 RGDYRPSRGSA 495
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/300 (52%), Positives = 210/300 (70%), Gaps = 13/300 (4%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
R+ +KE E+F+GGLD+DAT+ D+RKVF +G V EVRL N T +NKG+AF++F E
Sbjct: 276 RRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQ 335
Query: 205 AKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
AKRA+ E+KNPVI GK+CG PS+D+DTL++GNIC TWTKEA+K+KLK YGV VE++ L
Sbjct: 336 AKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTL 395
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
V D EG +RGFAF+ F +AM A+KRLQ+ DVVFG ++ KV+FA+ +P EI
Sbjct: 396 VEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGV-DKLAKVSFADSFIDPGDEI 454
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
MA VKTVF+D +PP W E+ +RD ++ YG++ +I LARNM A+RKDYGF+ F TH+AAV
Sbjct: 455 MAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAV 514
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 444
C ++I E +G+ K K+RARLS P+ + + G SSR R RGSG
Sbjct: 515 KCADSITGTELGEGHKKAKVRARLSRPLQRGR------------GKHSSRGDYRSSRGSG 562
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/329 (48%), Positives = 224/329 (68%), Gaps = 16/329 (4%)
Query: 129 ETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
ET++ E E + + +R+ +KE EIF+G LD+ AT+ED++KVF +GEV E+R+ KN T
Sbjct: 188 ETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKNPQT 247
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIK 248
++KG AF++FA E AKRA+ E+K+P+I GK+CG S+DNDTLF+GNIC TWT EA++
Sbjct: 248 KKSKGSAFLRFATMEQAKRAVKELKSPMINGKKCGVTASQDNDTLFIGNICKTWTPEALR 307
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+KLK YGVE +++I LV D + ++RG+AF+ FS DAM A+KRL K DV+FG E+
Sbjct: 308 EKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGV-EKP 366
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
KV+F + +P+ EIMA VKT+F+DG+ P W E ++RD +K YG + ++ LARNM +A+
Sbjct: 367 AKVSFTDSFLDPEDEIMAQVKTIFIDGLLPSWNEERVRDLLKRYGKLEKVELARNMPSAR 426
Query: 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRI 428
RKD+GF+ F THEAAV C INN E +G K K+RARLS P+ K
Sbjct: 427 RKDFGFVTFDTHEAAVTCAKFINNSELGEGEDKAKVRARLSRPLQKAGK----------- 475
Query: 429 GHGSSRTFSRYGRGSGRAGHHFNRANFQR 457
G SSR+ R G+GR+G R +F R
Sbjct: 476 GRQSSRSDQRSRHGTGRSG----RISFAR 500
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 230/384 (59%), Gaps = 50/384 (13%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
R+ +KE E+F+GGLD+DAT+ D+RK F +G V EVRL N T +NKG+AF++F E
Sbjct: 226 RQKRKEFEVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQ 285
Query: 205 AKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
AKRA+ E+KNPVI GK+CG PS+D+DTL++GNIC TWTKEA+K+KLK YGV VE++ L
Sbjct: 286 AKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTL 345
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
V D EG +RGFAF+ F +AM A+KRLQ+ DVVFG ++ KV+FA+ +P EI
Sbjct: 346 VEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGV-DKPAKVSFADSFIDPGDEI 404
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
MA VKTVF+D +PP W E+ +RD ++ YG++ +I LARNM A+RKDYGF+ F +H+AAV
Sbjct: 405 MAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAV 464
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 444
C ++I E +G+ K K+RARLS P+ + GR
Sbjct: 465 KCADSITGTELGEGDKKAKVRARLSRPLQR-------------------------GR--- 496
Query: 445 RAGHHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFIGRGGRS------ 498
G H +R +++ RG R SR P F R G G R+
Sbjct: 497 --GKHISRGDYRSSRGSGMMTRPSWSRPAP---------RSFPSRSVRGVGSRAPPVRPV 545
Query: 499 ----FRGGYNAPSRAAAGAGPSRS 518
R + P+R+ PSRS
Sbjct: 546 SVRDRRPMMSIPARSRPVPPPSRS 569
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 276/468 (58%), Gaps = 65/468 (13%)
Query: 26 QKEPALVEVAKHND----IIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
Q EP EV N+ +++A+ + K D + E EE+ N K E + EE++K
Sbjct: 27 QPEPETAEVVVKNNEENPVVDAVVEEKP-VDVEQEHEEVPNGSAKVE------NNEEEIK 79
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVDYG--EHDEEEFADDDMEEPADE------------ 127
+ LD +Y +Y + +YG ++DE+E D+ +E DE
Sbjct: 80 ESIDEYEKDEHLDFEDNYPEY-EAEEYGGVDYDEKEIEQDEGQEEGDEVEEDPEEIVGEE 138
Query: 128 ------------------------------AETLEDERRELNAIAKDRKIKKEHEIFIGG 157
A+ + E+ E + K+R+ +KE E+F+GG
Sbjct: 139 EGDTGDEEVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGG 198
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
LD+DAT+ D++KVF ++G V EVRL N T RNKG+AF++F E A+RA+ E+KNPVI
Sbjct: 199 LDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVI 258
Query: 218 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 277
GKRCG PS+D+DTL++GNIC TW KEA+K+KLK YGVE VE++ L+ D +EG++RGF
Sbjct: 259 NGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGF 318
Query: 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
AF+ FS DA AYKRLQK DV FG ++ KV+FA+ + EIMA VKTVF+D +P
Sbjct: 319 AFLEFSSRSDAKEAYKRLQKRDVAFGV-DKPAKVSFADSFIDLGDEIMAQVKTVFIDSLP 377
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
P W E+ +RD +K YG++ ++ LA++M A+RK+YGF+ FSTH AAV C ++I + +
Sbjct: 378 PSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSITSAGLGE 437
Query: 398 GNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGR 445
G+ K K+RARLS P+ K ++ G G + HG R+ GR SGR
Sbjct: 438 GDKKAKVRARLSRPLSK--PLQRGR--GKYVNHGDFRS----GRNSGR 477
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 162/324 (50%), Positives = 227/324 (70%), Gaps = 12/324 (3%)
Query: 122 EEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR 181
+E A + + E+E RE + K+R+ +KE E+F+GGLD+DAT+ D++KVF ++G V EVR
Sbjct: 172 DEHAQKPDAEEEEHRE---VVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVR 228
Query: 182 LHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNT 241
L N T RNKG+AF++F E A+RA+ E+KNPVI GK+CG PS+D+DTL++GNIC T
Sbjct: 229 LMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKT 288
Query: 242 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301
W KEA+K+KLK YGVE VE++ L+ D +EG++RGFAF+ FS DA AY+RLQK DV
Sbjct: 289 WKKEALKEKLKHYGVENVEDLTLIEDGTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVA 348
Query: 302 FGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 361
FG ++ KV+FA+ + EIMA VKTVF+D +PP W E +RD +K YG++ +I LA
Sbjct: 349 FG-VDKPAKVSFADSFIDLGDEIMAQVKTVFVDSLPPSWDEVYVRDLLKKYGEIEKIELA 407
Query: 362 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421
++M A+RK+YGF+ FSTH AAV C ++I + +G+ K K+RARLS P+ K ++ G
Sbjct: 408 KDMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSK--PLQRG 465
Query: 422 MSGGFRIGHGSSRTFSRYGRGSGR 445
G + HG R+ GR SGR
Sbjct: 466 R--GKHVNHGDFRS----GRNSGR 483
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 178/437 (40%), Positives = 260/437 (59%), Gaps = 35/437 (8%)
Query: 37 HNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDY 96
H D+ EE+ +D ++E ++DD E E+ + + LG Q + +
Sbjct: 87 HVDVPSKKETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERELG---QEDHELV 143
Query: 97 GSYEDYGDCVDYGEHDEEEFADDDME----------------EPADEAETLEDERRELNA 140
+ + E + EFAD+ + E ET++ E E +
Sbjct: 144 NEEGEELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHD 203
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ +R+ +KE EIF+G LD+ A++ED++KVF +GEV EVR+ KN T ++KG AF++FA
Sbjct: 204 VLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA 263
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E AKRA+ E+K+P+I GK+CG S+DNDTLFVGNIC WT EA+++KLK YGVE ++
Sbjct: 264 TVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMD 323
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
+I LV D + ++RG+AF+ FS DAM A+KRL K DV+FG E+ KV+F + +
Sbjct: 324 DITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGV-EKPAKVSFTDSFLDL 382
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
+ EIMA VKT+F+DG+ P W E ++RD +K YG + ++ LARNM +A+RKD+GF+ F TH
Sbjct: 383 EDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTH 442
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 440
EAAV+C INN E +G K K+RARLS P+ K G SSR+ R
Sbjct: 443 EAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGK-----------GRQSSRSDQRSR 491
Query: 441 RGSGRAGHHFNRANFQR 457
G+GR+G R++F R
Sbjct: 492 HGAGRSG----RSSFAR 504
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 178/437 (40%), Positives = 260/437 (59%), Gaps = 35/437 (8%)
Query: 37 HNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDY 96
H D+ EE+ +D ++E ++DD E E+ + + LG Q + +
Sbjct: 87 HVDVPSKKETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERELG---QEDHELV 143
Query: 97 GSYEDYGDCVDYGEHDEEEFADDDME----------------EPADEAETLEDERRELNA 140
+ + E + EFAD+ + E ET++ E E +
Sbjct: 144 NEEGEELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHD 203
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+ +R+ +KE EIF+G LD+ A++ED++KVF +GEV EVR+ KN T ++KG AF++FA
Sbjct: 204 VLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA 263
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E AKRA+ E+K+P+I GK+CG S+DNDTLFVGNIC WT EA+++KLK YGVE ++
Sbjct: 264 TVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMD 323
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
+I LV D + ++RG+AF+ FS DAM A+KRL K DV+FG E+ KV+F + +
Sbjct: 324 DITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGV-EKPAKVSFTDSFLDL 382
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
+ EIMA VKT+F+DG+ P W E ++RD +K YG + ++ LARNM +A+RKD+GF+ F TH
Sbjct: 383 EDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTH 442
Query: 381 EAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYG 440
EAAV+C INN E +G K K+RARLS P+ K G SSR+ R
Sbjct: 443 EAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGK-----------GRQSSRSDQRSR 491
Query: 441 RGSGRAGHHFNRANFQR 457
G+GR+G R++F R
Sbjct: 492 HGAGRSG----RSSFAR 504
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/259 (49%), Positives = 190/259 (73%), Gaps = 1/259 (0%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ K E+++GGLD+D T+ED++ +FE+ GEV+EVRL +N T +N+GYAFV++++
Sbjct: 45 ERRKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAA 104
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AKRA E+ I G+ C PSE+NDTL +GNI +W KE + + LK +E +E +
Sbjct: 105 MAKRAAEELGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELT 164
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L+ D Q EGL+RGFAF+ FS H DA+ A+++LQ+PD +FG +R+ KVA+A+PL EPD +
Sbjct: 165 LMEDPQVEGLNRGFAFIEFSTHKDALEAFRKLQQPDAIFG-ADRSAKVAWAQPLYEPDED 223
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M+ VK+VF+DG+PP W+E +R+ YG++ RIVLARNM +AKRKD+GF++F +AA
Sbjct: 224 TMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAA 283
Query: 384 VACINAINNKEFSDGNSKV 402
+ACI+A+NN E DG+ KV
Sbjct: 284 LACIDALNNTEIIDGDIKV 302
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/260 (49%), Positives = 192/260 (73%), Gaps = 1/260 (0%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ K+ E+F+GGLD++ T+E++ VF R+G+V+EVRL KN T +NKGYAF++FA+
Sbjct: 11 ERRKHKKLEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAA 70
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AKRA +++ I G+ CG PSE+NDTLF+GNI W KE + + LK + +E VE+I
Sbjct: 71 IAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFAIENVEDIT 130
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L+ D Q EG++RGFAF+ F+ H +A+ A++RLQ+ D VFG +R+ K+A+A+PL EPD +
Sbjct: 131 LMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFG-TDRSAKIAWAQPLNEPDED 189
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
IM+ VK+VF+DG+PP W E ++++ YG V RIVLARNM +AKRKD+GF+++ +AA
Sbjct: 190 IMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVNYVERDAA 249
Query: 384 VACINAINNKEFSDGNSKVK 403
+ CI+A+NN E S + KV+
Sbjct: 250 LLCIDALNNTEISYEDIKVE 269
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 191/270 (70%), Gaps = 5/270 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
DR+ K E+++GGLD+D T+ED++ +F++ GEVIE+RL +N T +NKG+AF+++A+
Sbjct: 49 DRRKHKRLEVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFAFIRYASAA 108
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AKRA + + I G++C PSE+NDTL +GNI +W KE + + LK +E +E +
Sbjct: 109 MAKRATEDFETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELT 168
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L+ D Q EG++RGFAF+ FS H DA+ A+++LQ+PD +FG ER+ KVA+A+PL EPD +
Sbjct: 169 LMEDPQVEGVNRGFAFIEFSTHKDALDAFRKLQQPDAIFG-TERSAKVAWAQPLYEPDED 227
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M+ VK+VF+DG+P W+E +R+ YG++ RIVLARNM +AKRKD+GF+++ AA
Sbjct: 228 TMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAA 287
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMP 413
+ CI+A+NN E DG+ KV S P P
Sbjct: 288 LTCIDALNNTEIIDGDMKV----LFSWPFP 313
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 203/291 (69%), Gaps = 6/291 (2%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
A+ E+E+ E + K+ + +KE E+F+GGLD++AT+ D+RKVF ++GE+ EVR+ N
Sbjct: 174 ADVKEEEQVE---VIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS--EDNDTLFVGNICNTWTKE 245
T RNKG+A ++F EH KRAL E+KNPVI GK+CG + +D+DTL++ NIC +W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
A+K+KLK YGVE +++ L+ D +EG + G AF+ FS H D+ AYKRLQK DVVFG
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGV- 349
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
++ +V+FA + +IMA VKTVF+D +PP W E+ +R +K YG V ++ LA+NM
Sbjct: 350 DKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMP 409
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
A+RK+YGF+ F TH AAV C +I + +GN K K+RARLS P+PK +
Sbjct: 410 GARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVR 460
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 203/291 (69%), Gaps = 6/291 (2%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
A+ E+E+ E + K+ + +KE E+F+GGLD++AT+ D+RKVF ++GE+ EVR+ N
Sbjct: 174 ADVKEEEQVE---VIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS--EDNDTLFVGNICNTWTKE 245
T RNKG+A ++F EH KRAL E+KNPVI GK+CG + +D+DTL++ NIC +W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
A+K+KLK YGVE +++ L+ D +EG + G AF+ FS H D+ AYKRLQK DVVFG
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGV- 349
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
++ +V+FA + +IMA VKTVF+D +PP W E+ +R +K YG V ++ LA+NM
Sbjct: 350 DKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMP 409
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
A+RK+YGF+ F TH AAV C +I + +GN K K+RARLS P+PK +
Sbjct: 410 GARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVR 460
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 203/291 (69%), Gaps = 6/291 (2%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
A+ E+E+ E + K+ + +KE E+F+GGLD++AT+ D+RKVF ++GE+ EVR+ N
Sbjct: 174 ADVKEEEQVE---VIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS--EDNDTLFVGNICNTWTKE 245
T RNKG+A ++F EH KRAL E+KNPVI GK+CG + +D+DTL++ NIC +W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
A+K+KLK YGVE +++ L+ D +EG + G AF+ FS H D+ AYKRLQK DVVFG
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGV- 349
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
++ +V+FA + +IMA VKTVF+D +PP W E+ +R +K YG V ++ LA+NM
Sbjct: 350 DKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMP 409
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
A+RK+YGF+ F TH AAV C +I + +GN K K+RARLS P+PK +
Sbjct: 410 GARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVR 460
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 224/371 (60%), Gaps = 27/371 (7%)
Query: 49 EETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDY 108
E+T E+P +E+V+ VD +D K GE+ ++ G ++ + D
Sbjct: 254 EDTIENPRISAMEDVN---------VDSIKDQK----GESENENMNPQGEMKEEVENCDG 300
Query: 109 GEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVR 168
G E +D M ++E E LE ++R ++ EIFIGGLD+ A +ED+R
Sbjct: 301 GGTKEVAEVEDSMAVLSEEMEALERQKR------------RKTEIFIGGLDKSAREEDIR 348
Query: 169 KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228
KVFE +GEV+EVRL N T +NKGYAF++FA AKRAL + ICGK+CGTAP E
Sbjct: 349 KVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVE 408
Query: 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288
NDT+F+GNI W E + + L++ G++ ++ + ++ D + +RGFAF+ + DA
Sbjct: 409 GNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDA 468
Query: 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 348
AYK+LQK DV H + +KVA+AEPL EPD + M VKTV+ + +P W+E ++RD
Sbjct: 469 QLAYKKLQKKDVFGKH--QNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDC 526
Query: 349 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408
K +G++ +VLARN+ ++KRKD+ F+ ++T EAA+ CI + + + D KVK++ L
Sbjct: 527 FKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSL 586
Query: 409 SNPMPKTQAVK 419
+ P+PK + +K
Sbjct: 587 AKPIPKGKQIK 597
>gi|218195305|gb|EEC77732.1| hypothetical protein OsI_16837 [Oryza sativa Indica Group]
Length = 572
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%), Gaps = 1/218 (0%)
Query: 217 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 276
+ GK+CG APS DNDTLFVGNIC TWTKE +K+KLK YGVE +++ LV D + G++RG
Sbjct: 54 VRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRG 113
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGV 336
+A + FS +AM A++RLQK DVVFG +R+ KV+FA+ E D EIMA V+TVF+DG+
Sbjct: 114 YALLEFSTRPEAMDAFRRLQKRDVVFGV-DRSAKVSFADSYPEVDDEIMAQVRTVFIDGL 172
Query: 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ AVAC + I N E
Sbjct: 173 PPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIG 232
Query: 397 DGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+G+SK K+RARLS P+ + +K G+ G FR+G G+ R
Sbjct: 233 EGDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPR 270
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG-----EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+F+G + + T+E +++ + G +++ V N NR GYA ++F+ + A
Sbjct: 70 LFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNR--GYALLEFSTRPEAMD 127
Query: 208 ALTEM-KNPVICG-------KRCGTAPSEDND------TLFVGNICNTWTKEAIKQKLKD 253
A + K V+ G + P D++ T+F+ + +W ++ +K+ LK
Sbjct: 128 AFRRLQKRDVVFGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKK 187
Query: 254 YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313
YG +E + L ++ + F FV F H +A+A + ++ G + V+
Sbjct: 188 YGA--IEKVELARNMP-AAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARL 244
Query: 314 AEPLREP 320
+ PL+ P
Sbjct: 245 SRPLQRP 251
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 187/267 (70%), Gaps = 6/267 (2%)
Query: 128 AETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
A+ E+E+ E + K+ + +KE E+F+GGLD++AT+ D+RKVF ++GE+ EVR+ N
Sbjct: 174 ADVKEEEQVE---VIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS--EDNDTLFVGNICNTWTKE 245
T RNKG+A ++F EH KRAL E+KNPVI GK+CG + +D+DTL++ NIC +W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
A+K+KLK YGVE +++ L+ D +EG + G AF+ FS H D+ AYKRLQK DVVFG
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFG-V 349
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
++ +V+FA + +IMA VKTVF+D +PP W E+ +R +K YG V ++ LA+NM
Sbjct: 350 DKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMP 409
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINN 392
A+RK+YGF+ F TH AAV C +I +
Sbjct: 410 GARRKNYGFVTFGTHAAAVECAESITS 436
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 147/188 (78%), Gaps = 1/188 (0%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+AK+R+ +KE E+F+GGLD+DA +ED+RKVF +GEV+E+RL N T +NKG+AF+++A
Sbjct: 25 VAKERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYA 84
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E AKRA TE+KNP + GK CG +PS+DNDTLF+GNIC TWTKEA+++KLK + ++ +E
Sbjct: 85 TVEQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIE 144
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ LV D ++EG++RG AF+ FS DAM AYKRLQK DVV G +RT KV+FAE +P
Sbjct: 145 DLTLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLG-TDRTAKVSFAETFVDP 203
Query: 321 DPEIMAHV 328
D E+MA +
Sbjct: 204 DEEVMAQI 211
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/270 (42%), Positives = 181/270 (67%), Gaps = 3/270 (1%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKE 203
RK +KE+E+F+ GL R+A ++DV GEV EVRL ++ + + NKG+AF +FA
Sbjct: 96 RKRRKEYEVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLNKGFAFARFAEVW 155
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
A+ A +++ +I GK CG + DN+TL + NIC W+KE + +KLK + +E +E+IN
Sbjct: 156 QARWAANDLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDIN 215
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L+ +G +RG+AF+ FS HVDA+A + +LQK D+ G R +++F+ + + D +
Sbjct: 216 LIEHPDRKGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVR-AQISFSNTISQDD-K 273
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+M VK+VFLDG+PPHW E+ +R++ +G++ I LARNM TAKRKD+GFI F+T +AA
Sbjct: 274 VMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAA 333
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMP 413
+ CI+ +N F +G+ K++++A L P P
Sbjct: 334 LGCIDMVNKGRFGEGSGKIRMKATLQRPKP 363
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 176/263 (66%), Gaps = 3/263 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIGGL DA +ED+RKVF +GE++E+RL N T +NK +AF+++++ AK+AL +
Sbjct: 500 EIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALEK 559
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
ICGK+C AP E NDT+F+GNI WT + + L++ G+E ++ + +++D +
Sbjct: 560 YAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSNV 619
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
G +RGFAFV H DA A+K+L K D+ + +KVA+AEPL EPD E + VK+V
Sbjct: 620 GRNRGFAFVELETHKDAQIAFKKLHKKDL---GKLQNIKVAWAEPLSEPDEEELLKVKSV 676
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
+ + +PP W E ++R +G++ IVL+RN+ +++RKD+ FI+FST EAA+ACI +
Sbjct: 677 YAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFY 736
Query: 392 NKEFSDGNSKVKLRARLSNPMPK 414
++ ++ S+V ++ L+ P+PK
Sbjct: 737 HETLTNEGSQVNVKVSLAKPIPK 759
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG-EVIE--VRLHKNFSTNRNKGYAFV--------KFAN 201
IF+G +D+ T DV K+ + IG E I+ + + + RN+G+AFV + A
Sbjct: 581 IFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSNVGRNRGFAFVELETHKDAQIAF 640
Query: 202 KEHAKRALTEMKNPVICGKRCGTAPSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVE 257
K+ K+ L +++N + + P E+ +++ + +W +E ++ +G
Sbjct: 641 KKLHKKDLGKLQNIKVAWAEPLSEPDEEELLKVKSVYAEYLPPSWDEEKLRSYFTKFG-- 698
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
+ENI L ++ H + FAF+ FS A+A + + + VKV+ A+P+
Sbjct: 699 EIENIVLSRNL-HSSRRKDFAFINFSTREAALACIESFYHETLTNEGSQVNVKVSLAKPI 757
Query: 318 REPDP 322
+ P
Sbjct: 758 PKGKP 762
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 188/294 (63%), Gaps = 11/294 (3%)
Query: 121 MEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV 180
+EE AE EDE R RK +KE+E+F+ GL +A +E+V GEV EV
Sbjct: 88 VEEAGMMAEAGEDEGR--------RKKRKEYEVFVFGLPPEAVEENVAGALAEAGEVEEV 139
Query: 181 RLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNIC 239
RL ++ + + NKG+AFV+FA A+ A +++ I GK CG + DN+TL + NIC
Sbjct: 140 RLVRDPAEPQLNKGFAFVRFAEVWQARWAADDLRTAKIKGKACGICKNNDNETLHLRNIC 199
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
W+K+ + + LK + +E +E+INL+ +G +RG+AF+ FS HVDA+A + +LQK D
Sbjct: 200 FDWSKDDLAENLKTFELENLEDINLIEHPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRD 259
Query: 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359
+ G + +++F+ + + D ++M VK+VFLDG+PPHW E+ +R++ +G++ I
Sbjct: 260 LYLG-TDIKAQISFSNTISQDD-KVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQ 317
Query: 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
LARNM TAKRKD+GFI F+T +AA+ CI+ +N F +G+ KV+++A L P P
Sbjct: 318 LARNMFTAKRKDFGFISFTTRQAAIDCIDMVNKGRFGEGSGKVRMKATLQRPKP 371
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 218/387 (56%), Gaps = 26/387 (6%)
Query: 113 EEEFADD-DMEEPADEAETLEDER------RELNAIAKDRKIKKEHEIFIGGLDRDATQE 165
E+E A+D MEEP++E +EDE E+ K RK + ++E+F+ GL +DA +E
Sbjct: 66 EDEPAEDVIMEEPSEEV-IMEDEEPTPSPAEEVVGEGKRRKKRVDYEVFVSGLPQDAAEE 124
Query: 166 DVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224
DV + G++ EVRL ++ + R NKG+AFV+FA A+ A +++ I GK CG
Sbjct: 125 DVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAANDLREATIKGKACGI 184
Query: 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284
+ + +TL + NIC W+K+ + +KLK + +E ++ INL+ +G +RG+AF+ F
Sbjct: 185 CKNSETETLHLRNICFDWSKDDLAEKLKPFKLENLDRINLIEHPDRKGKNRGYAFLDFRT 244
Query: 285 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQ 344
HVDA+ A+ +LQK D+ G R ++F+ L + D EIM VK+VFLDGVPPHW E++
Sbjct: 245 HVDAVEAFVKLQKIDLYLGTDSR-ANISFSNTLSQ-DDEIMEKVKSVFLDGVPPHWDEDK 302
Query: 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
+R+ +G++ I LARNM TA RKD+GFI F+ ++A+ CI +N +G+ KV +
Sbjct: 303 VREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCIKMVNKDGVGEGSGKVPI 362
Query: 405 RARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNR-ANFQRGRGFYQ 463
+A L P A K G G R F + S GHH +R +F R Y
Sbjct: 363 KASLQRPR---HAFKKYSRQGSSSLLGVRRGF--VDKSSSGRGHHSDRYRHFSPVRRSYS 417
Query: 464 --HGRNHSSRMGPTEYDFDNRYTEFHG 488
H R HS D + R+T G
Sbjct: 418 DNHSRRHS-------IDVEERHTSVRG 437
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 175/276 (63%), Gaps = 3/276 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ + E+F+GGL RDA ++DVR VF + GE+ EVR+ N +NKGY FV++ +
Sbjct: 229 ERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 288
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AK+A+ E N ICGK C A ND +F+GNI W KE + ++LK G+E ++++
Sbjct: 289 QAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 348
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L SD + +RGFAF+ DA AYK+L + + FG ++VA+AEPL +PD +
Sbjct: 349 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKN-AFGK-GLNIRVAWAEPLNDPDEK 406
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M VK++F+DG+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA
Sbjct: 407 DM-QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAA 465
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
++C+ + + +EFS SKV ++ L+ P +++ K
Sbjct: 466 ISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRAL 209
IF+G +++ +EDV K ++IG E I+ K+ S N N+G+AF++ A+ A
Sbjct: 318 IFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAY 377
Query: 210 TEMKNPVICGK----RCGTA-PSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVE 257
++ GK R A P D D ++FV I +W +K+ K +G
Sbjct: 378 KKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHG-- 435
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
+E++ L D+ R FAF+ + A++ + K + + +KV+ A+P
Sbjct: 436 KIESVVLSRDMP-SAKRRDFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPA 494
Query: 318 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355
++ H ++ +G K ++IR ++ Y +
Sbjct: 495 QQSKQTKEDHKSSITGEG---KMKTSKIRYPVQDYTHI 529
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 175/276 (63%), Gaps = 3/276 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ + E+F+GGL RDA ++DVR VF + GE+ EVR+ N +NKGY FV++ +
Sbjct: 229 ERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 288
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AK+A+ E N ICGK C A ND +F+GNI W KE + ++LK G+E ++++
Sbjct: 289 QAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 348
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L SD + +RGFAF+ DA AYK+L + + FG ++VA+AEPL +PD +
Sbjct: 349 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKN-AFGK-GLNIRVAWAEPLNDPDEK 406
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M VK++F+DG+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA
Sbjct: 407 DM-QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAA 465
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
++C+ + + +EFS SKV ++ L+ P +++ K
Sbjct: 466 ISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRAL 209
IF+G +++ +EDV K ++IG E I+ K+ S N N+G+AF++ A+ A
Sbjct: 318 IFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAY 377
Query: 210 TEMKNPVICGK----RCGTA-PSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVE 257
++ GK R A P D D ++FV I +W +K+ K +G
Sbjct: 378 KKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHG-- 435
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
+E++ L D+ R FAF+ + A++ + K + + +KV+ A+P
Sbjct: 436 KIESVVLSRDMP-SAKRRDFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPA 494
Query: 318 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355
++ H ++ +G K ++IR ++ Y +
Sbjct: 495 QQSKQTKEDHKSSITGEG---KMKTSKIRYPVQDYTHI 529
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 175/276 (63%), Gaps = 3/276 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ + E+F+GGL RDA ++DVR VF + GE+ EVR+ N +NKGY FV++ +
Sbjct: 3 ERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 62
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AK+A+ E N ICGK C A ND +F+GNI W KE + ++LK G+E ++++
Sbjct: 63 QAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 122
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L SD + +RGFAF+ DA AYK+L + + FG ++VA+AEPL +PD +
Sbjct: 123 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKN-AFGKG-LNIRVAWAEPLNDPDEK 180
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M VK++F+DG+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA
Sbjct: 181 DM-QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAA 239
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
++C+ + + +EFS SKV ++ L+ P +++ K
Sbjct: 240 ISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 275
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRAL 209
IF+G +++ +EDV K ++IG E I+ K+ S N N+G+AF++ A+ A
Sbjct: 92 IFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAY 151
Query: 210 TEMKNPVICGK----RCGTA-PSEDND-------TLFVGNICNTWTKEAIKQKLKDYGVE 257
++ GK R A P D D ++FV I +W +K+ K +G
Sbjct: 152 KKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKEIFKKHG-- 209
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
+E++ L D+ R FAF+ + A++ + K + + +KV+ A+P
Sbjct: 210 KIESVVLSRDMP-SAKRRDFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPA 268
Query: 318 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355
++ H ++ +G K ++IR ++ Y +
Sbjct: 269 QQSKQTKEDHKSSITGEG---KMKTSKIRYPVQDYTHI 303
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 13/332 (3%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKE 203
R+ +K+ E+ +GGL RDA +EDV + G+V EVRL ++ + R NKG+AFV+FA
Sbjct: 84 RRKRKDCEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAW 143
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
A+ A +++ ++ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+IN
Sbjct: 144 QARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDIN 203
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
LV D + +G +RG+AF+ F +VD + A+ +LQ D+ G R +V+F++ L D +
Sbjct: 204 LVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRA-QVSFSKTL-SLDDK 261
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
IM VK+VFLDG+PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A
Sbjct: 262 IMEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSA 321
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMP--KTQAVKG-----GMSGGFRIG--HGSSR 434
+ CI+ ++ +G+ KV+++A L P P K + +G G+ GF IG +G
Sbjct: 322 LDCISTVSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQGITPMLGIRRGF-IGKSYGDRE 380
Query: 435 TFSRYGRGSGRAGHHFNRANFQRGRGFYQHGR 466
+ R R +H RG GF H R
Sbjct: 381 HYGDRERYDDRERYHNRERYGDRGFGFSGHAR 412
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 162/252 (64%), Gaps = 3/252 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ K E+F+GGL RDA ++DVR VF + GE+ EVR+ N +NKGY FV++ +
Sbjct: 3 ERRKKMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 62
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AK+A+ E N ICGK C A ND +F+GNI W KE + ++LK G+E ++++
Sbjct: 63 QAKKAIAEFGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 122
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L SD + +RGFAF+ DA AYK+L + + FG ++VA+AEPL +PD E
Sbjct: 123 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKN-AFGK-SLNIRVAWAEPLNDPD-E 179
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
A VK++F+DG+P W Q+++ K +G + +VL+R+M +AKR+D+ FI++ T EAA
Sbjct: 180 KDAQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAA 239
Query: 384 VACINAINNKEF 395
++C+ + + +EF
Sbjct: 240 ISCLESFDKEEF 251
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 154/235 (65%), Gaps = 2/235 (0%)
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK 244
N T +NKGYAF++FA AKRAL + ICGK+CGTAP E NDT+F+GNI W
Sbjct: 2 NSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKN 61
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
E + + L++ G++ ++ + ++ D + +RGFAF+ + DA AYK+LQK DV H
Sbjct: 62 EDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKH 121
Query: 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
+ +KVA+AEPL EPD + M VKTV+ + +P W+E ++RD K +G++ +VLARN+
Sbjct: 122 --QNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNL 179
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
++KRKD+ F+ ++T EAA+ CI + + + D KVK++ L+ P+PK + +K
Sbjct: 180 RSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKPIPKGKQIK 234
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFS-TNRNKGYAFVKFANKEHAKRAL 209
IF+G +D++ EDV K+ + IG ++ +V + + S RN+G+AF++ + A+ A
Sbjct: 50 IFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAY 109
Query: 210 TEMKNPVICGK----RCGTA-----PSEDN----DTLFVGNICNTWTKEAIKQKLKDYGV 256
+++ + GK + A P ED T++ I ++W +E ++ K +G
Sbjct: 110 KKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFG- 168
Query: 257 EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E++ L +++ + FAFV ++ A+ + + + + VKV+ A+P
Sbjct: 169 -EIESVVLARNLRSSK-RKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
Query: 317 L 317
+
Sbjct: 227 I 227
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 204/333 (61%), Gaps = 15/333 (4%)
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKE 203
R+ +K+ E+ +GGL RDA +EDV + G+V EVRL ++ + R NKG+AFV+FA
Sbjct: 84 RRKRKDCEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAW 143
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
A+ A +++ ++ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+IN
Sbjct: 144 QARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDIN 203
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
LV D + +G +RG+AF+ F +VD + A+ +LQ D+ G R +V+F++ L D +
Sbjct: 204 LVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRA-QVSFSKTL-SLDDK 261
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
IM VK+VFLDG+PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A
Sbjct: 262 IMEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSA 321
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMP--KTQAVKG-----GMSGGFRIG--HGSSR 434
+ CI+ ++ +G+ KV+++A L P P K + +G G+ GF IG +G
Sbjct: 322 LDCISTVSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQGITPMLGIRRGF-IGKSYGDRE 380
Query: 435 TFSRYGRGSGRAGHHFNRANF-QRGRGFYQHGR 466
+ R R +H NR + RG GF H R
Sbjct: 381 HYGDRERYDDRERYH-NRERYGDRGFGFSGHAR 412
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 168/284 (59%), Gaps = 7/284 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GGLD+ A +ED+RKVF + EV +VRL ++ + K AF+ FA E A+RA+ E
Sbjct: 72 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRL--SWDSESKKRVAFLTFATVELARRAICE 129
Query: 212 MKNPVICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ +PVI GKRC TA +D + TL+V NIC WTK+ ++ KL +YGV+ E + L ++
Sbjct: 130 ISDPVINGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPAREN 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RG+A + F DA A + L+K +V FG R K F+ + EIM+HVK
Sbjct: 190 KEKNRGYAHLDFRSGKDASEALELLKKENVSFGQ-NRAAKADFSRKYASGNDEIMSHVKR 248
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
V+LDG+P W+E ++ +K +G ++++ LAR++ +A R +Y ++ F THEAA C+N +
Sbjct: 249 VYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATCVNGV 308
Query: 391 NNKEFSDGNSKVKLRARLSNP---MPKTQAVKGGMSGGFRIGHG 431
N + +V A L+ P +P + S IG G
Sbjct: 309 NVDGLYFRDKRVNAWADLAKPRVRIPSEGTAQASSSVAQEIGLG 352
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 153/244 (62%), Gaps = 2/244 (0%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
K + E+F+GGL +D + D+ F +GE+ E+RL K+ +T +KGYAFV+F + + A
Sbjct: 396 KPPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFA 455
Query: 206 KRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
K A+ ++ V+ G++ G S DN TLF+G++ W ++ + Q L+D ++GV I L+
Sbjct: 456 KLAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLM 515
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM 325
D + +RGFAFV FS H +A A+ ++ KP F + VKV +AEPL EP E+M
Sbjct: 516 KDTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPG--FRLADVDVKVDWAEPLNEPSEEVM 573
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+ VK++++ +P ++ IR +G++ RIVL++N+ +A+R D+ F++++ AA+A
Sbjct: 574 SKVKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALA 633
Query: 386 CINA 389
I+A
Sbjct: 634 AIDA 637
>gi|242043858|ref|XP_002459800.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
gi|241923177|gb|EER96321.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
Length = 730
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 203/416 (48%), Gaps = 83/416 (19%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV---------RLHKNF------- 186
K RK + ++E+F+ GL RDA +EDV K G+V EV RL+K F
Sbjct: 105 KGRKKRIDYEVFVSGLPRDAAEEDVAKALAEAGDVEEVRLVRDPADQRLNKGFAFVRFAA 164
Query: 187 ------------------------------STNRNKGYA-------------FVKFANKE 203
+ ++K +A F FA+
Sbjct: 165 AWQARWAANDLREATINGREISFDFALSARTQGKDKWWAAWPASSLARSSALFFTFASSS 224
Query: 204 HA--KRALTEMK------NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG 255
A + L+++ N I GK CG + +N+TL V NIC W+K+ + +KL+ +
Sbjct: 225 LASYQAGLSQVTFIYWYLNFQIKGKACGICKNSENETLHVRNICFDWSKDDLAEKLEPFK 284
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E ++ INL+ + +G +RG+AF+ F HVDA+AA+ +LQK D+ G R ++F+
Sbjct: 285 LENLDRINLIEHPEKKGKNRGYAFLDFRTHVDAVAAFVKLQKRDLYLGTDFR-AHISFSN 343
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
L + D EIM VK+VFLDG+PPHW E+++R+ +G++ I LARNM TAKRKD+GFI
Sbjct: 344 TLSQDD-EIMEKVKSVFLDGLPPHWDEDKVREMFGKFGEIDSIQLARNMYTAKRKDFGFI 402
Query: 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 435
F+T ++A+ CI +N +G+ KV ++A L P A K G G R
Sbjct: 403 GFTTRQSALDCIKMVNKDGVGEGSGKVLIKASLQRP---RHAFKKNSWQGSSSLLGVRRG 459
Query: 436 FSRYGRGSGRAGHHFNRANF---QRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHG 488
F SGR GHH +R +R H R H S D + R+T G
Sbjct: 460 FVDKSY-SGR-GHHSDRYRHYSPERRSYLDNHSRRHRS------IDVEERHTSMRG 507
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 139 NAIAKDRKI-KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
N +++D +I +K +F+ GL ++ VR++F + GE+ ++L +N T + K + F+
Sbjct: 343 NTLSQDDEIMEKVKSVFLDGLPPHWDEDKVREMFGKFGEIDSIQLARNMYTAKRKDFGFI 402
Query: 198 KFANKEHA 205
F ++ A
Sbjct: 403 GFTTRQSA 410
>gi|162459112|ref|NP_001105099.1| RNA recognition water-stress protein1 [Zea mays]
gi|22655529|gb|AAN04093.1| water-stress protein [Zea mays]
Length = 480
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L+ + G++RG+A + FS +AM A++ LQK DVVFG +R+ KV+FA+ + D E
Sbjct: 11 LLRTPNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFADSYPQVDDE 69
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
IMA V+TVFLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+ F TH+ A
Sbjct: 70 IMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNA 129
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
VAC ++N E +G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 130 VACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 180
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 191 NKGYAFVKFANKEHAKRAL-TEMKNPVICG-------KRCGTAPSEDND------TLFVG 236
N+GYA ++F+ + A A T K V+ G + P D++ T+F+
Sbjct: 21 NRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSAKVSFADSYPQVDDEIMAQVRTVFLD 80
Query: 237 NICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
+ +W ++ +K+ LK YG +E + L ++ + F FV F H +A+A + +
Sbjct: 81 GLPPSWDEDRVKKYLKKYGA--IEKVELARNMP-AAKRKDFGFVTFDTHDNAVACTEGMS 137
Query: 297 KPDVVFGHPERTVKVAFAEPLREP 320
++ G + V+ + PL+ P
Sbjct: 138 NSEIGEGEHKAKVRARLSRPLQRP 161
>gi|414586042|tpg|DAA36613.1| TPA: water-stress protein [Zea mays]
Length = 479
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
V V + + G++RG+A + FS +AM A++ LQK DVVFG +R+ KV+FA+
Sbjct: 2 VSKVLTTYYLLRTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV-DRSAKVSFAD 60
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
+ D EIMA V+TVFLDG+PP W E++++ +K YG + ++ LARNM AKRKD+GF+
Sbjct: 61 SYPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFV 120
Query: 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
F TH+ AVAC ++N E +G K K+RARLS P+ + +K G+ G FR+GHG+ R
Sbjct: 121 TFDTHDNAVACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPR 179
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 182 LHKNFSTNRNKGYAFVKFANKEHAKRAL-TEMKNPVICG-------KRCGTAPSEDND-- 231
L + + N+GYA ++F+ + A A T K V+ G + P D++
Sbjct: 11 LLRTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSAKVSFADSYPQVDDEIM 70
Query: 232 ----TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
T+F+ + +W ++ +K+ LK YG +E + L ++ + F FV F H +
Sbjct: 71 AQVRTVFLDGLPPSWDEDRVKKYLKKYGA--IEKVELARNMP-AAKRKDFGFVTFDTHDN 127
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
A+A + + ++ G + V+ + PL+ P
Sbjct: 128 AVACTEGMSNSEIGEGEHKAKVRARLSRPLQRP 160
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 150/271 (55%), Gaps = 3/271 (1%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ ++ E+F+ GLD +EDVR VF GE+ +VR+ + T ++KGY FV++
Sbjct: 260 ERQRRRMTEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPS 319
Query: 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
AK+ + E IC K C + ND + + NI W KE I + L GVE ++ +
Sbjct: 320 QAKKVVAEFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVT 379
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L++D + G + G+AF+ DA AY +L + V + VA+A+ + + D E
Sbjct: 380 LMADCDNPGYNCGYAFLELETERDAWMAYIKLSRKGVF--RRCLNITVAWAKAMSDRDEE 437
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M VK++F++G+P W ++ + YG + R VL+ ++ +AKR D+ F+ ++THEAA
Sbjct: 438 -MQQVKSIFVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAA 496
Query: 384 VACINAINNKEFSDGNSKVKLRARLSNPMPK 414
+ C+ + +E + SKV ++ L P+ K
Sbjct: 497 ILCLELFDKEELTGNGSKVNIKVSLDKPVRK 527
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 151/265 (56%), Gaps = 11/265 (4%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE---------VRLHKNFSTNRNKGYAFVKF 199
K E+F+GGL RDAT++DVR+VF +IG++ E +RL ++ T +KGYAFV++
Sbjct: 255 KGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFVRY 314
Query: 200 ANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259
A+ A ++ +I G+ G S+DN +LFVG+I W+ E ++ LK+ G+ GV
Sbjct: 315 MEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIRGV 374
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
++I D + +RGF F+ F H +A A+ ++ + D F + V+V +AEPL E
Sbjct: 375 DHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRAD--FRLSGQKVRVDWAEPLNE 432
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P ++M+ VK++++ +P I YG + RIVL++N+ TA+RKD+ F+++
Sbjct: 433 PGEDVMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEE 492
Query: 380 HEAAVACINAINNKEFSDGNSKVKL 404
A+ I+ + E +V L
Sbjct: 493 RANALKAIDGKHGFEVQGRTLQVTL 517
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 196/418 (46%), Gaps = 46/418 (11%)
Query: 87 ENFQSELDDYGSYEDYGDCVDYG--EHDEEEFAD-------DDMEEPADEA----ETLED 133
+N+ E+DD E D V+ G E+ EEE+ D +D DE+ E L+D
Sbjct: 16 DNYMEEMDD-DVEEQIEDGVEGGGDENVEEEYEDSKAGGSGEDQLLEVDESRIANEPLKD 74
Query: 134 ERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
E ++ +D K K EIFIGGL R+A +ED+R + E IGE +EVRL K
Sbjct: 75 EENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALEEDLRDLCEPIGEALEVRLMK 134
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK 244
N + +KGYAF+ F KE A++A+ E+ + G+ + SE LF+GN+ +WT
Sbjct: 135 NRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSLSESKHRLFIGNVPKSWTD 194
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
+ ++ ++D G G ENI L+ D Q+ +RGFAFV + + +A A Y R + F
Sbjct: 195 DEFRKVIEDIG-PGAENIELIKDPQNPSRNRGFAFVEY--YNNACADYGRQKMSSSNFKL 251
Query: 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
T V++A+P D A VK +++ +P + Q+++ + +G+V ++V+
Sbjct: 252 DGNTPTVSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELFQRHGEVTKVVMPPAK 311
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN-------------- 410
S ++D+GFI F+ +A+ + E V L S+
Sbjct: 312 SGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQSDKKFEGVHPYSSGHP 371
Query: 411 ---PMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGRGSGRAGHHFNRANFQRGRGFY 462
P P G G G+G S F + YGRG AG H GR Y
Sbjct: 372 NFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIYGRGPMPAGMHMVPMVLPDGRIGY 429
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 202/433 (46%), Gaps = 51/433 (11%)
Query: 77 EEDLKSKLLGENFQSELDDYGSYEDYGDCVD-------YGEHDEEEFADDDME------- 122
E D + L EN+ E+DD + D VD G +E+E+ D E
Sbjct: 6 EIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKDQL 65
Query: 123 ---EPADEAETLEDERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKV 170
E +D A D+ ++L+ I +D K K + E+FIGGL RD ++D+R++
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLREL 125
Query: 171 FERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230
E +G+++EVRL K+ T NKGYAFV F KE A++A+ E+ + GK + SE
Sbjct: 126 CEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETK 185
Query: 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
LF+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +RGFAFV++ + +A A
Sbjct: 186 HRLFIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRNRGFAFVLY--YNNACA 242
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
Y R + F T V +A+P PD + VK +++ +P + Q+++ +
Sbjct: 243 DYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFR 302
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+G+V ++V+ + KR D+GFI ++ +A+ + E +V L ++
Sbjct: 303 RHGEVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQAD 361
Query: 411 ------------------PMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGRGSGRAGHH 449
P P G G G+G + + + YGRG AG
Sbjct: 362 KKPDGGYAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQ 421
Query: 450 FNRANFQRGRGFY 462
GR Y
Sbjct: 422 MVPMVLPDGRIGY 434
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 148/269 (55%), Gaps = 7/269 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+GG+ RD T+ED+R + G+V EVRL K+ T +NKGYAFV F N+E A++A+
Sbjct: 126 EIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAFVTFLNEECAEKAIET 185
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ + + G++ + S+ LFVGNI TW KE ++ L + G G++++ L+ D +
Sbjct: 186 LNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQG-PGIQSVELLKDPKTP 244
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
G +RGF FV + H A A + + K G T +++A+P PD M+ VK V
Sbjct: 245 GRNRGFGFVEYYNHACAEHARREMSKSSFRLGTNAPT--ISWADPRSGPDVSAMSQVKVV 302
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P E Q++ + +G+++++VL ++D+GF+ FS A + AI
Sbjct: 303 YVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQA---LKAIE 359
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKG 420
E + ++ L L+ P + +A G
Sbjct: 360 KTEVYELEGRI-LETSLAKPPAEKRAAGG 387
>gi|218195457|gb|EEC77884.1| hypothetical protein OsI_17174 [Oryza sativa Indica Group]
Length = 274
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
Query: 216 VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 275
++ G+ C ++ N+TL + NIC WTK+ + ++LK Y +E +E+INLV D + +G +R
Sbjct: 1 MVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNR 60
Query: 276 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 335
G+AF+ F +VD + A+ +LQ D+ G R +V+F++ L + D +IM VK+VFLDG
Sbjct: 61 GYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRA-QVSFSKTLSQDD-KIMEKVKSVFLDG 118
Query: 336 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+PPHW E+++R+ +G++ I LARNM AKRKD+GFI F++ ++A+ CI+ ++
Sbjct: 119 LPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSKGGI 178
Query: 396 SDGNSKVKLRARLSNP 411
+G+ K + S+P
Sbjct: 179 VEGSGKGRKLMASSSP 194
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
D+ ++K +F+ GL ++ VR+VF + GE+ + L +N + K + F+ F +++
Sbjct: 105 DKIMEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQ 164
Query: 204 HAKRALTEM 212
A ++ +
Sbjct: 165 SALDCISTV 173
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 34/370 (9%)
Query: 123 EPADEAETLEDERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKVFER 173
E +D A D+ ++L+ I +D K K + E+FIGGL RD ++D+R++ E
Sbjct: 69 EKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEP 128
Query: 174 IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL 233
+G+++EVRL K+ T +KGYAFV F KE A++A+ E+ + GK + SE L
Sbjct: 129 MGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRL 188
Query: 234 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293
F+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +RGFAFV++ + +A A Y
Sbjct: 189 FIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRNRGFAFVLY--YNNACADYS 245
Query: 294 RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
R + F T V +A+P PD + VK +++ +P + Q+++ + +G
Sbjct: 246 RQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHG 305
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN--- 410
+V ++V+ + KR D+GFI ++ +A+ + E +V L ++
Sbjct: 306 EVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKP 364
Query: 411 ---------------PMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGRGSGRAGHHFNR 452
P P G G G+G + + + YGRG AG
Sbjct: 365 DGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVP 424
Query: 453 ANFQRGRGFY 462
GR Y
Sbjct: 425 MMLPDGRIGY 434
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 190/395 (48%), Gaps = 39/395 (9%)
Query: 100 EDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-------- 151
EDYGD +EE A+DD + + ET +D+ + + I ++ + K H
Sbjct: 57 EDYGDTKGGDMEAQEEIAEDD--DNHIDIETADDDEKPASPIDEEEREKYSHLLSLPPHG 114
Query: 152 -EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
E+FIGGL RD +ED+R + E IGE+ EVRL K+ + +KGYAFV F K+ A++A+
Sbjct: 115 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 174
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
++ + GK + SE + LF+GNI WT++ ++ +++ G GVENI L+ D +
Sbjct: 175 DLHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVG-PGVENIELIKDPAN 233
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVK 329
+RGFAFV++ + +A A Y R + D F V +A+P P+ A VK
Sbjct: 234 TTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK 291
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ +P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 292 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAVKD 349
Query: 390 INNKEFSDGNSKVKLR---------------ARLSNPMPKTQAVKGGMS----GGFRIGH 430
E + +V L NP P GG + G G
Sbjct: 350 TERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPNPAPFVHPTFGGFAAAPYGAMGAGL 409
Query: 431 GSSRTFSR---YGRGSGRAGHHFNRANFQRGRGFY 462
G + +FS+ YGRG+ G GR Y
Sbjct: 410 GIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 444
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 34/370 (9%)
Query: 123 EPADEAETLEDERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKVFER 173
E +D A D+ ++L+ I +D K K + E+FIGGL RD ++D+R++ E
Sbjct: 69 EKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEP 128
Query: 174 IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL 233
+G+++EVRL K+ T +KGYAFV F KE A++A+ E+ + GK + SE L
Sbjct: 129 MGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRL 188
Query: 234 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293
F+GN+ TWT++ ++ ++ G GVE I L+ D Q+ +RGFAFV++ + +A A Y
Sbjct: 189 FIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRNRGFAFVLY--YNNACADYS 245
Query: 294 RLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353
R + F T V +A+P PD + VK +++ +P + Q+++ + +G
Sbjct: 246 RQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHG 305
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN--- 410
+V ++V+ + KR D+GFI ++ +A+ + E +V L ++
Sbjct: 306 EVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKP 364
Query: 411 ---------------PMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGRGSGRAGHHFNR 452
P P G G G+G + + + YGRG AG
Sbjct: 365 DGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVP 424
Query: 453 ANFQRGRGFY 462
GR Y
Sbjct: 425 MMLPDGRIGY 434
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 40/396 (10%)
Query: 100 EDYGDCVDYGEHD-EEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH------- 151
EDYGD D +EE A+DD + + ET +D+ + + I + + K H
Sbjct: 57 EDYGDTKGGDMEDVQEEIAEDD--DNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 114
Query: 152 --EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+FIGGL RD +ED+R + E IGE+ EVRL K+ + +KGYAFV F K+ A++A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
E+ + GK + SE + LF+GNI WT++ ++ ++D G GVENI L+ D
Sbjct: 175 EELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPT 233
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHV 328
+ +RGFAFV++ + +A A Y R + D F V +A+P P+ A V
Sbjct: 234 NTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQV 291
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +++ +P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAVK 349
Query: 389 AINNKEFSDGNSKVKLR---------------ARLSNPMPKTQAVKGGMS----GGFRIG 429
E + +V L P P GG + G G
Sbjct: 350 DTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAG 409
Query: 430 HGSSRTFSR---YGRGSGRAGHHFNRANFQRGRGFY 462
G + +FS+ YGRG+ G GR Y
Sbjct: 410 LGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 138/238 (57%), Gaps = 3/238 (1%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+E+F+GG+ R+ T+E+++ +F IG V +VR+ K+ S NKGY FV FANK + K A+
Sbjct: 111 ENEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAV 170
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+ N GK SE+ +F+GN+ K+ + L D+ +G+ N++ ++D
Sbjct: 171 VQFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHS-DGITNVDFLTDPD 229
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAF+ ++ + A A K +P+ G+ V V +A+P++EPD IM V+
Sbjct: 230 NSSRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGN--CNVTVNWADPIQEPDETIMNQVR 287
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ +P E Q+R + YG + ++++ N+ +R+D+GF+ F+ + A A +
Sbjct: 288 VLYIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATL 345
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
VF+ G+ + E +++D G+V ++ + ++ S + K YGF+ F+ +
Sbjct: 114 VFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVVQF 173
Query: 391 NNKEFSDGNSKVKL 404
NNKEF N +VK
Sbjct: 174 NNKEFKGKNLRVKF 187
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 146/250 (58%), Gaps = 6/250 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD + +DVR++ E +G+++E++L K+ T +KGYAFV + KE A++A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK SE LF+GNI TWT++ ++ ++ G GVE+I+L+ D Q++
Sbjct: 165 IHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVESIDLIKDPQNQ 223
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA-HVKT 330
+RGFAFV++ + +A A + R + V F T V +A+P PD A VK
Sbjct: 224 SRNRGFAFVLY--YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKA 281
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + Q+++ + +G+V ++V+ ++ KR D+GFI ++ +A+ +
Sbjct: 282 LYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR-DFGFIHYAERSSALKAVKET 340
Query: 391 NNKEFSDGNS 400
E DG +
Sbjct: 341 EKYEI-DGQA 349
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 185/396 (46%), Gaps = 40/396 (10%)
Query: 100 EDYGDCVDYGEHD-EEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH------- 151
EDYGD D +EE A+DD + + ET +D+ + + I + + K H
Sbjct: 57 EDYGDTKGGDMEDVQEEIAEDD--DNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 114
Query: 152 --EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+FIGGL RD +ED+R + E IGE+ EVRL K+ + +KGYAFV F K+ A++A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
E+ + ++ LF+GNI WT++ ++ ++D G GVENI L+ D
Sbjct: 175 EELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPT 233
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHV 328
+ +RGFAFV++ + +A A Y R + D F V +A+P P+ A V
Sbjct: 234 NTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQV 291
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +++ +P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAVK 349
Query: 389 AINNKEFSDGNSKVKLR---------------ARLSNPMPKTQAVKGGMS----GGFRIG 429
E + +V L P P GG + G G
Sbjct: 350 DTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAG 409
Query: 430 HGSSRTFSR---YGRGSGRAGHHFNRANFQRGRGFY 462
G + +FS+ YGRG+ G GR Y
Sbjct: 410 LGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 136/236 (57%), Gaps = 3/236 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD +ED+R + E +GE+ E+R+ K+ + +KGYAF+ F KE A++A+ +
Sbjct: 106 EVFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIED 165
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ + GK + S+ LF+GN+ +WT + ++ ++ G GVENI L+ D Q+
Sbjct: 166 LHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTDDEFRRLIEGVG-PGVENIELIKDPQNP 224
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAFV++ + +A A Y R + F + V++A+P PD A VK +
Sbjct: 225 NRNRGFAFVLY--YNNACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKAL 282
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
++ +P + Q+++ + +G+V ++ + + + ++D+ FI ++ +A+ +
Sbjct: 283 YVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAV 338
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 136/244 (55%), Gaps = 3/244 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGG+ RD ++D+R++ GE+ EVR+ K+ T NKGYAFV + N+E A++A+
Sbjct: 103 EVFIGGVTRDTNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIET 162
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + G++ + S+ LF+GNI +W +++ L + G GVE + L+ D ++
Sbjct: 163 LANSELKGRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEG-PGVEGVELLKDPRNP 221
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
G +RGFAFV + H A A K + + G+ T V++A+P +P + +K V
Sbjct: 222 GKNRGFAFVEYYNHACADHARKLMSRSSFRLGNNVPT--VSWADPRTGAEPAATSQIKVV 279
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P E Q+R + +G++ ++VL ++ ++D+GF+ F+ A+ I
Sbjct: 280 YVRNLPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTE 339
Query: 392 NKEF 395
E
Sbjct: 340 KYEL 343
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 146/271 (53%), Gaps = 5/271 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIGGL RD T++D+R++ E +GE+ EVRL K+ TN NKG+AFV F +K+ A+RA+ +
Sbjct: 120 QVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIED 179
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+++ G+ + S+ LF+GN+ ++E + +K G GV NI + D
Sbjct: 180 VQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKG-PGVVNIEMFKDQHDP 238
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-EIMAHVKT 330
+RGF FV + H A A Y RL+ F + V++AEP + DP A VKT
Sbjct: 239 NRNRGFLFVEYYNH--ACAEYARLKLSSRNFKVDGSQLTVSWAEPKGQTDPSSAAAQVKT 296
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + + +I+D +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 297 IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGS 355
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421
E +V + L++ P GG
Sbjct: 356 EKYEIDGQVLEVSMAKPLADKKPDHSHRSGG 386
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 144/271 (53%), Gaps = 5/271 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD T+ED+R++ E +GE+ EVRL K+ T NKG+AFV F +KE A+RA+ +
Sbjct: 106 EVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIED 165
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+++ G+ + S+ LFVGN+ ++E + +K G GV NI + D
Sbjct: 166 VQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEMFKDQHDP 224
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-EIMAHVKT 330
+RGF FV + H A A ++L P+ + T V++AEP D A VKT
Sbjct: 225 NRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLT--VSWAEPKGSTDASSAAAQVKT 282
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + + +I+D +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 283 IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGS 341
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421
E +V + L++ P GG
Sbjct: 342 EKYEIDGQVLEVSMAKPLADKKPDHSHRPGG 372
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 149/272 (54%), Gaps = 8/272 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +DA++ED++ E +GEV EVR+ K + NKG+AFV F N E A +A+ E
Sbjct: 125 EVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEE 184
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N G++ + S+ LF+GN+ +W +E IK+ + + G GV + LV D+++
Sbjct: 185 LNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIG-PGVTAVELVKDMKNS 243
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A A Y R + + F V++A+P + D + VK V
Sbjct: 244 SNNRGFAFIDYYNH--ACAEYSRQKMMNPKFKLDNNAPTVSWADP-KNADSSPASQVKAV 300
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++Q++ + +G + ++VL S ++ GF+ F+ +A + A+
Sbjct: 301 YVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSA---MKALK 357
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
N E + + +V L L+ P ++V G S
Sbjct: 358 NTEKYEIDGQV-LECSLAKPQADQKSVGGSNS 388
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 17/317 (5%)
Query: 113 EEEFADDDMEEPADEAETLEDERR---ELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRK 169
EE A D+M++ + +DE+R EL A+ + + E+FIGGL RD T+ED+R+
Sbjct: 75 EEAAAGDEMDKDGTDGPKDDDEKRKWDELLALPQ-----QGCEVFIGGLPRDTTEEDLRE 129
Query: 170 VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229
+ E +GE+ EVRL K+ T NKG+AFV F K+ A+RA+ E+ + G+ + S+
Sbjct: 130 LCEPLGEIHEVRLMKDKDTKENKGFAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQA 189
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
LFVGN+ +++ + +K G GV NI + D+ +RGF FV + H A
Sbjct: 190 KHRLFVGNVPKGLSEDELTSIIKGKG-PGVVNIEMFKDLHDPSRNRGFLFVEYYNHACAD 248
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTVFLDGVPPHWKENQ 344
+ ++L PD + T V++AEP A VKT+++ +P + + +
Sbjct: 249 YSRQKLSSPDFKVDGSQLT--VSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEK 306
Query: 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
++D + +G+V +IVL + KR D+GF+ F+ +A+ + E +V +
Sbjct: 307 VKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSM 365
Query: 405 RARLSNPMPKTQAVKGG 421
LS+ P GG
Sbjct: 366 AKPLSDKKPDHSVRPGG 382
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 145/267 (54%), Gaps = 5/267 (1%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+E+F+GG+ ++ T++D++ VF +G V ++RL KN +KGYAF+ F +K + A+
Sbjct: 46 ENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAV 105
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
++ N + GK SE+ LF+GN+ + KE + + L + EG+ +++ + D
Sbjct: 106 EKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKH-TEGITSMDFLMDPD 164
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV FS + A A K P G V V +A+P++EPD ++M +V+
Sbjct: 165 NPTRNRGFAFVEFSDYYLADKARKEFASPSFRIG--SSCVTVNWADPVQEPDEDVMKNVR 222
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ +P ++ + +G + ++++ N+ +R+D+GF+ F + EAA +
Sbjct: 223 VLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAEEALVR 282
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
NN+ + L + PM K Q
Sbjct: 283 HNNQPITYQGR--DLIVSFAKPMDKKQ 307
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 160/311 (51%), Gaps = 19/311 (6%)
Query: 119 DDMEE---PADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIG 175
D+ME+ P DE E ++ E EL A+ + E+F+GGL RD T+ED+R++ E +G
Sbjct: 81 DEMEKGDGPEDEEEKMKWE--ELLALPP-----QGSEVFLGGLPRDTTEEDLRQLCEPLG 133
Query: 176 EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFV 235
E+ EVRL K+ T NKG+AFV F K+ A+ A+ E+ + G+ + S+ LFV
Sbjct: 134 EIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFV 193
Query: 236 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
GN+ ++E + +K G GV NI + D+ + +RGF FV + H A A ++L
Sbjct: 194 GNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKL 252
Query: 296 QKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350
PD + T V++AEP A VKT+++ +P + + +++D +
Sbjct: 253 SSPDFKVDGSQLT--VSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFE 310
Query: 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
+G+V +IVL + KR D+GF+ F+ +A+ + E +V + LS+
Sbjct: 311 VHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 369
Query: 411 PMPKTQAVKGG 421
P GG
Sbjct: 370 KKPDHSFKPGG 380
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 149/272 (54%), Gaps = 8/272 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +DA++ED++ E +GEV EVR+ K + NKG+AFV F N E A +A+ E
Sbjct: 56 EVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEE 115
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N G++ + S+ LF+GN+ +W +E IK+ + + G GV + LV D+++
Sbjct: 116 LNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIG-PGVTAVELVKDMKNS 174
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A A Y R + + F V++A+P + D + VK V
Sbjct: 175 SNNRGFAFIDYYNH--ACAEYSRQKMMNPKFKLDNNAPTVSWADP-KNADSSPASQVKAV 231
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++Q++ + +G + ++VL S ++ GF+ F+ +A + A+
Sbjct: 232 YVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSA---MKALK 288
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
N E + + +V L L+ P ++V G S
Sbjct: 289 NTEKYEIDGQV-LECSLAKPQADQKSVGGSNS 319
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 143 KDRKIK-----KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNF-STNRNKGYA 195
K RKIK +H +FIG + R +ED++KV IG V V L K+ +++ N+G+A
Sbjct: 122 KGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFA 181
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG 255
F+ + N A+ + +M NP DN+ V +W
Sbjct: 182 FIDYYNHACAEYSRQKMMNPKF---------KLDNNAPTV-----SWADPKNADSSPASQ 227
Query: 256 VEGVENINLVSDIQHEGLSRGF 277
V+ V NL +I + L + F
Sbjct: 228 VKAVYVKNLPKNITQDQLKQLF 249
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 182/396 (45%), Gaps = 48/396 (12%)
Query: 100 EDYGDCVDYGEHD-EEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH------- 151
EDYGD D +EE A+DD + + ET +D+ + + I + + K H
Sbjct: 37 EDYGDTKGGDMEDVQEEIAEDD--DNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 94
Query: 152 --EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+FIGGL RD +ED+R + E IGE+ EVRL K+ + +KGYAFV F K+ A++A+
Sbjct: 95 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 154
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
E+ + GK + SE + LF+GNI WT++ ++ ++D G D
Sbjct: 155 EELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG---------PGDPT 205
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHV 328
+ +RGFAFV++ + +A A Y R + D F V +A+P P+ A V
Sbjct: 206 NTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQV 263
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +++ +P + Q+++ + +G+V +IV ++D+GF+ ++ +A+ +
Sbjct: 264 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP--GKGGKRDFGFVHYAERSSALKAVK 321
Query: 389 AINNKEFSDGNSKVKLR---------------ARLSNPMPKTQAVKGGMS----GGFRIG 429
E + +V L P P GG + G G
Sbjct: 322 DTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAG 381
Query: 430 HGSSRTFSR---YGRGSGRAGHHFNRANFQRGRGFY 462
G + +FS+ YGRG+ G GR Y
Sbjct: 382 LGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGY 417
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 190/422 (45%), Gaps = 66/422 (15%)
Query: 100 EDYGDCVDYGEHD-EEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH------- 151
EDYGD D +EE A+DD + + ET +D+ + + I + + K H
Sbjct: 57 EDYGDTKGGDMEDVQEEIAEDD--DNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 114
Query: 152 --EIFIGGLDRDATQEDVRKVFERIGEVIE--------------VRLHKNFSTNRNKGYA 195
E+FIGGL RD +ED+R + E IGE+ E VRL K+ + +KGYA
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYA 174
Query: 196 FVKFANKEHAKRALTEMKNP------------VICGKRCGTAPSEDNDTLFVGNICNTWT 243
FV F K+ A++A+ E+ + + GK + SE + LF+GNI WT
Sbjct: 175 FVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWT 234
Query: 244 KEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303
++ ++ ++D G GVENI L+ D + +RGFAFV++ + +A A Y R + D F
Sbjct: 235 EDEFRKVIEDVG-PGVENIELIKDPTNTTRNRGFAFVLY--YNNACADYSRQKMIDSNFK 291
Query: 304 HPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
V +A+P P+ A VK +++ +P + Q+++ + +G+V +IV
Sbjct: 292 LEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP 351
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR---------------AR 407
++D+GF+ ++ +A+ + E + +V L
Sbjct: 352 --GKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGA 409
Query: 408 LSNPMPKTQAVKGGMS----GGFRIGHGSSRTFSR---YGRGSGRAGHHFNRANFQRGRG 460
P P GG + G G G + +FS+ YGRG+ G GR
Sbjct: 410 APTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRV 469
Query: 461 FY 462
Y
Sbjct: 470 GY 471
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 7/243 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ DA++ED+++ E IGEV E+R+ K ++ +KGYAFV F KE A +A+ E
Sbjct: 69 EVYLGGIPPDASEEDLKEFCESIGEVTEIRIMKGKDSSESKGYAFVTFRTKELASKAIEE 128
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ N LF+GN+ W +E +K+ +K G GV ++ L+ D Q+
Sbjct: 129 LNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEEDMKKAVKKTG-PGVNSVELLKDPQNP 187
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + K + P+ F + V++A+P + + VK V
Sbjct: 188 SRNRGFAFIEYYNHACAEYSRKMMSSPE--FKLDDNAPTVSWADP-KNAGSSAASQVKAV 244
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P ++++R + +G V ++VL ++ +GF+ F+ +A + A+
Sbjct: 245 YVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSA---MKALK 301
Query: 392 NKE 394
N E
Sbjct: 302 NTE 304
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 165/343 (48%), Gaps = 25/343 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +D++++D+R+ E IGEV EVR+ ++ +N NKG+AFV F + E A +A+ E
Sbjct: 396 EVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDE 455
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+GN+ +W +E +K+ + + G GV + LV D+++
Sbjct: 456 LNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNT 514
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A A Y R + + F + V++A+P + D + VK V
Sbjct: 515 SNNRGFAFIDYYNH--ACAEYSRQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAV 571
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ +G + ++VL S ++ GF+ FS +A+ +
Sbjct: 572 YVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTE 631
Query: 392 NKEF----------------SDGNSKVKLRARLSNPMPKT-QAVKGGMSGGFRIGHGSSR 434
E G S + L N P+ GG G G+G S
Sbjct: 632 KYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGGS- 690
Query: 435 TFSR---YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGP 474
F + YGRG AG GR Y + S + P
Sbjct: 691 GFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTP 733
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 165/343 (48%), Gaps = 25/343 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +D++++D+R+ E IGEV EVR+ ++ +N NKG+AFV F + E A +A+ E
Sbjct: 440 EVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDE 499
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+GN+ +W +E +K+ + + G GV + LV D+++
Sbjct: 500 LNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNT 558
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A A Y R + + F + V++A+P + D + VK V
Sbjct: 559 SNNRGFAFIDYYNH--ACAEYSRQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAV 615
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ +G + ++VL S ++ GF+ FS +A+ +
Sbjct: 616 YVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTE 675
Query: 392 NKEF----------------SDGNSKVKLRARLSNPMPKT-QAVKGGMSGGFRIGHGSSR 434
E G S + L N P+ GG G G+G S
Sbjct: 676 KYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGGS- 734
Query: 435 TFSR---YGRGSGRAGHHFNRANFQRGRGFYQHGRNHSSRMGP 474
F + YGRG AG GR Y + S + P
Sbjct: 735 GFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTP 777
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 146/272 (53%), Gaps = 9/272 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD T+ED+R++ E +GE+ EVRL K+ T NKG+AFV F +KE A+RA+ +
Sbjct: 106 EVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIED 165
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+++ G+ + S+ LFVGN+ ++E + +K G GV NI + +H+
Sbjct: 166 VQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEM---FKHD 221
Query: 272 -GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-EIMAHVK 329
+RGF FV + H A A ++L P+ + T V++AEP D A VK
Sbjct: 222 PNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLT--VSWAEPKGSTDASSAAAQVK 279
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
T+++ +P + + +I+D +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 280 TIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG 338
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421
E +V + L++ P GG
Sbjct: 339 SEKYEIDGQVLEVSMAKPLADKKPDHSHRPGG 370
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 197/439 (44%), Gaps = 50/439 (11%)
Query: 56 EEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEE 115
E+ +E +DD D++ +L + D + + D ++
Sbjct: 15 EDNYMEEIDD-------------DVEDQLDEDGEDDAGDPHAEENVEEEYEDSKTEGSQK 61
Query: 116 FADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQED 166
+ + + E EDE++ ++ ++ K K E+FIGGL RD +++
Sbjct: 62 DQSPEADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIEDE 121
Query: 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226
+R + E IGE+ E+RL K+ + +KG+AFV F +KE A++A+ E+ + GK +
Sbjct: 122 LRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSI 181
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286
SE + LF+GN+ T++ ++ +++ G GVE I L+ D Q +RGFAF+++ +
Sbjct: 182 SETKNRLFIGNVPKNLTEDEFRKIIEEVG-PGVEVIELIKDPQTPTRNRGFAFILY--YN 238
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA--HVKTVFLDGVPPHWKENQ 344
+A A Y R + + F T V++A+P P A VK +++ +P + Q
Sbjct: 239 NACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQ 298
Query: 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
++ + +GDV ++V+ A ++D+GFI ++ +A+ + E +V L
Sbjct: 299 LKGLFQRHGDVTKVVMPPG--KAGKRDFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVL 356
Query: 405 RARLSN------------------PMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGRGS 443
++ P+P G G G G + +F + YGRG
Sbjct: 357 AKPQADKKPDAAYPYNAGVHPNPVPLPAYSGFAGNPYGSLGTGFGVASSFQQPVIYGRGP 416
Query: 444 GRAGHHFNRANFQRGRGFY 462
AG H GR Y
Sbjct: 417 MPAGMHMVPMVLPDGRIGY 435
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 141/263 (53%), Gaps = 5/263 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD T+ED+R++ + GE+ EVRL K+ T NKG+AFV F KE A+RA+ E
Sbjct: 105 EVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEE 164
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ + G+ + S+ LFVGN+ +E +++ ++ G GV NI + D+
Sbjct: 165 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDP 223
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL-REPDPEIMAHVKT 330
+RGF FV + H A A ++L P+ + T V++AEP A VKT
Sbjct: 224 SRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLT--VSWAEPKGSSDSSSAAAQVKT 281
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + + +I++ + +G+V ++VL KR D+GF+ F+ +A+ +
Sbjct: 282 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKR-DFGFVHFAERSSALKAVKGS 340
Query: 391 NNKEFSDGNSKVKLRARLSNPMP 413
EF+ +V + L + P
Sbjct: 341 EKYEFNGQVLEVSMAKPLGDKKP 363
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 145/275 (52%), Gaps = 17/275 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + RD ++++ VFE G + + RL + + KG+AF F+NK+ A+ A+ +
Sbjct: 153 QVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKK 212
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GKR G S N LFVG+I T +K+ I ++ G++++ +
Sbjct: 213 LDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKV-TNGLDDVIVYLSADQ 271
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+G +RGFAF+ + H A A +RL + V+G+ V V +A+P EPD + M VK
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNI--VVTVDWADPQEEPDDDAMKKVK 329
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
V+L + P E +++++ YG V R+ K KDY F+ F+ + A+ I
Sbjct: 330 VVYLRNLSPSITEEKLKEEYSQYGAVDRV--------KKLKDYAFVHFTERDHALKAIEE 381
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ KE DG +K+ A L+ P P + + G SG
Sbjct: 382 TDGKEM-DG---LKIEASLAKPQPGNKDRQRGQSG 412
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 135/248 (54%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ + NK+ A++A+
Sbjct: 168 EVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 227
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++++ L
Sbjct: 228 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQDVILYHQP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA
Sbjct: 285 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 342 VKVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVQAM 393
Query: 388 NAINNKEF 395
+N KE
Sbjct: 394 EGMNGKEL 401
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 146/265 (55%), Gaps = 8/265 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ ++ ++ED+R + +GEV EVR+ K + KGYAFV F KE A +A+ E
Sbjct: 104 EVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEE 163
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GKR + S+ LF+GN+ WT+ +K+ + + G GV + L+ D Q+
Sbjct: 164 LNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIG-PGVICVELLKDPQNS 222
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+AF+ + H A A Y R + + F V++A+P R + ++ VK+V
Sbjct: 223 SRNRGYAFIEYYNH--ACAEYSRQKMSNSNFKLGSNAPTVSWADP-RNSESSAISLVKSV 279
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++++++ + +G + ++VL S ++ +GF+ F+ +A + A+
Sbjct: 280 YVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSA---MKALK 336
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQ 416
N E + + ++ L L+ P +Q
Sbjct: 337 NTEKYEIDGQL-LECSLAKPQANSQ 360
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 144/275 (52%), Gaps = 17/275 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IFIG L RD ++++ +FE G + ++R+ + + NKG+AF + KE A A+ E
Sbjct: 165 QIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVKE 224
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
M + GK G S+ N+ LFVG+I + TK+ I + VE + ++ + +
Sbjct: 225 MDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASK-VENLSDVIVYISSED 283
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAF+ F+ H DA A +R + VFG+ TV +A+P+ EPD +M+ VK
Sbjct: 284 KSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVD--WADPVEEPDDNVMSKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
V++ + P +E ++ + K YG V ++ K KDY FI F + AV I
Sbjct: 342 VVYVRNLSPAIEETKLNELFKQYGAVEKV--------KKLKDYAFIHFVNRDDAVRAIEE 393
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+N ++ D +K+ L+ P + + + G SG
Sbjct: 394 LNGQDLDD----LKIEVSLAKPQTEKKEARRGQSG 424
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 135/248 (54%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ + NK+ A++A+
Sbjct: 164 EVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 223
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++ + L
Sbjct: 224 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYQQP 280
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA
Sbjct: 281 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAK 337
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 338 VKVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAM 389
Query: 388 NAINNKEF 395
+ +N KE
Sbjct: 390 DEMNGKEV 397
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 135/248 (54%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ + NK+ A++A+
Sbjct: 164 EVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 223
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++ + L
Sbjct: 224 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYQQP 280
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA
Sbjct: 281 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAK 337
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 338 VKVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAM 389
Query: 388 NAINNKEF 395
+ +N KE
Sbjct: 390 DEMNGKEV 397
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 9/246 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ DA++ D+++ E IGEV EVR+ K ++ +KGYAFV F KE A +A+ E
Sbjct: 90 EVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGYAFVSFRTKELASKAIEE 149
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ N LF+GN+ W +E +K+ +K G GV ++ L+ D Q+
Sbjct: 150 LNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEENMKKAVKKIG-PGVNSVELLKDPQNP 208
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---REPDPEIMAHV 328
+RGFAF+ + H A + K++ P+ F + V++A+P ++ V
Sbjct: 209 SRNRGFAFIEYYNHACAEYSRKKMSNPE--FKLDDNAPTVSWADPKNAGSSAASQVCCSV 266
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K V++ +P ++ +R + +G V ++VL ++ +GF+ F+ +A +
Sbjct: 267 KAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSA---MK 323
Query: 389 AINNKE 394
A+ N E
Sbjct: 324 ALKNTE 329
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 140/263 (53%), Gaps = 5/263 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD T+ED+R++ + GE+ EVRL K+ T NKG+AFV F K+ A+RA+ E
Sbjct: 108 EVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAAQRAIEE 167
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ + G+ + S+ LFVGN+ +E +++ ++ G GV NI + D+
Sbjct: 168 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKG-PGVVNIEMFKDLHDP 226
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL-REPDPEIMAHVKT 330
+RGF FV + H A A ++L P+ + T V++AEP A VKT
Sbjct: 227 SRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLT--VSWAEPKGSSDSSSAAAQVKT 284
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + + +I++ + +G+V ++VL KR D+GF+ F+ +A+ +
Sbjct: 285 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKR-DFGFVHFAERSSALKAVKGS 343
Query: 391 NNKEFSDGNSKVKLRARLSNPMP 413
EF +V + L + P
Sbjct: 344 EKYEFDGQVLEVSMAKPLGDKKP 366
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ + NK+ A++A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++ + L
Sbjct: 226 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQP 282
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDPE+MA
Sbjct: 283 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPEVMAK 339
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 340 VKVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVKAM 391
Query: 388 NAINNKEF 395
+N KE
Sbjct: 392 EEMNGKEL 399
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F +KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK+ G S N+ LFVG+I + TKE I ++ EG+ ++ L Q
Sbjct: 223 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---MVTVEWADPMEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + YG++ R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANSVTEEILEKAFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEE 390
Query: 390 INNKEF 395
+N KE
Sbjct: 391 LNGKEL 396
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + +V L+ + ++N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ N+ T+E +++ +YG
Sbjct: 305 RLMSGKVKVWGNMVTVEWADPMEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFSEYG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + L ++ G P +++ FA+P
Sbjct: 363 NLERVKKLKD---------YAFIHFEERDGAVKALEELNGKELE-GEP---IEIVFAKP 408
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F +KE A+ A+
Sbjct: 167 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 226
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK+ G S N+ LFVG+I + TKE I ++ EG+ ++ L Q
Sbjct: 227 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 285
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 286 KSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---MVTVEWADPMEDPDPEVMAKVK 342
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + YG++ R+ K KDY FI F + AV +
Sbjct: 343 VLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEE 394
Query: 390 INNKEF 395
+N KE
Sbjct: 395 MNGKEL 400
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + +V L+ + ++N+G+ F+++ + + A +A
Sbjct: 249 LFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARR 308
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ N+ T+E +++ +YG
Sbjct: 309 RLMSGKVKVWGNMVTVEWADPMEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSEYG-- 366
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + ++ G P +++ FA+P
Sbjct: 367 NLERVKKLKD---------YAFIHFEERDGAVKALEEMNGKELE-GEP---IEIVFAKP 412
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F NKE A+ A+
Sbjct: 174 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQEAVKL 233
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 234 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 292
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 293 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 349
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 350 VLFVRNLANSVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEG 401
Query: 390 INNKEFSDGNSKV 402
+N KE N ++
Sbjct: 402 MNGKELEGENIEI 414
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F K+ A A+
Sbjct: 169 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAAEAVKL 228
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++ + L
Sbjct: 229 CDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQP 285
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDP++MA
Sbjct: 286 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPDVMAK 342
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 343 VKVLFVRKLATPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAM 394
Query: 388 NAINNKEF 395
+ +N KE
Sbjct: 395 SEMNGKEL 402
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 134/243 (55%), Gaps = 7/243 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +A++ED+R E +GEV EVR+ K + KGYAFV F KE A +A+ E
Sbjct: 122 EVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEE 181
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N I G++ + S+ LF+ N+ TW +E +K+ + + G GV ++L D Q+
Sbjct: 182 LNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNS 240
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + K++ P + T V++A+P + + + VK V
Sbjct: 241 SRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNAST--VSWADP-KNVESSAASQVKAV 297
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++Q+R+ +G + ++V+ + + +GF+ F+ +A + A+
Sbjct: 298 YIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSA---MKALK 354
Query: 392 NKE 394
N E
Sbjct: 355 NTE 357
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 175/351 (49%), Gaps = 34/351 (9%)
Query: 120 DMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE 179
D ++ +D E ++ER+ +A E+++GG+ DA+++D+R E IGEV E
Sbjct: 82 DAQKGSDSEEGQDEERKHAELLALP---PHGSEVYLGGIPIDASEQDLRHFCESIGEVTE 138
Query: 180 VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNIC 239
VR+ K +++ KGYAFV F +KE A +A+ ++ N G++ + S+ N LF+GN+
Sbjct: 139 VRIMKGKASSDTKGYAFVTFRSKELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGNVP 198
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
W ++ + Q + G GV ++ L+ D Q+ +RGFAF+ + H A + K++ P
Sbjct: 199 RDWEEKDMMQVVMKIG-PGVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQ 257
Query: 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359
F + V++A+P + + VK V++ +P ++++R + +G V ++V
Sbjct: 258 --FKLDDNAPTVSWADP-KNAGSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVV 314
Query: 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+ + +R + F+ F+ +A + A+ N E + + +V L L+ P ++
Sbjct: 315 VPPAKAGHERSRFAFVHFAERSSA---MKALKNTEKYEIDGQV-LECSLAKPQADQKSSG 370
Query: 420 G------------------GMSGGF--RIGHGSSRTFSR---YGRGSGRAG 447
G G+ GG +G G +F++ YGRG AG
Sbjct: 371 GSNLQKSVLHPTFPPRLGYGLVGGTYGALGAGYGASFAQPMIYGRGPTPAG 421
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 130/236 (55%), Gaps = 5/236 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ A+ ED++ + ERIGEV EVR+ K ++ NKG+ FV F + E A +A+ E
Sbjct: 130 EVYIGGIPH-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEE 188
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+GN+ +W E +K+ + + G GV + LV D+++
Sbjct: 189 LNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIG-PGVTGVELVKDMKNT 247
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + +++ P G E V++A+P + + + VK V
Sbjct: 248 NNNRGFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAV 304
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
++ +P + + Q++ + +G + ++VL S ++ GF+ F+ A+ +
Sbjct: 305 YVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKAL 360
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
H V++ G+P H + ++ + G+V + + + +++ K +GF+ F++ E A
Sbjct: 127 HGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKA 185
Query: 387 INAINNKEF 395
I +NN EF
Sbjct: 186 IEELNNTEF 194
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 137/240 (57%), Gaps = 13/240 (5%)
Query: 128 AETLEDERRELNAIAKDRKIKKEH---------EIFIGGLDRDATQEDVRKVFERIGEVI 178
+E LED+ + ++ ++ K K E+FIGGL +DA ++D+R + E IG++
Sbjct: 77 SEPLEDDEKPTASVNEEEKEKHAQLLSLPPHGSEVFIGGLPKDALEDDLRDLCEPIGDIF 136
Query: 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNI 238
E+RL K+ T +KG+AFV F +KE A++A+ E+ + GK + SE + LFVGN+
Sbjct: 137 EIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTLRCSLSETKNRLFVGNV 196
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
WT++ ++ +++ G GV+ I L+ D Q+ +RGFAFV++ + +A A Y R +
Sbjct: 197 PKNWTEDEFRKVVEEVG-PGVDIIELIRDPQNPSRNRGFAFVLY--YNNACADYSRQKML 253
Query: 299 DVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
+ F T V++A+P PD A VK +++ +P + Q+++ + +G+ +R
Sbjct: 254 NANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEAVR 313
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
H VF+ G+P E+ +RD + GD+ I L ++ T + K + F+ F + E A
Sbjct: 107 HGSEVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKA 166
Query: 387 INAINNKEFSDGNSKVKL 404
I I++KEF + L
Sbjct: 167 IEEIHSKEFKGKTLRCSL 184
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FER G + ++RL + + N+GYAFV F +KE A++A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQQAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 CNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F ++AV +
Sbjct: 339 VLFVRNLASAVTEELLEKTFSQFGKLERV--------KKLKDYAFIHFEERDSAVKALGD 390
Query: 390 INNKEF 395
+N K+
Sbjct: 391 LNGKDL 396
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ + T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASAVTEELLEKTFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A L D+ H +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFEERDSAVKALGDLNGKDLEGEH----IEIVFAKP 408
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 132/248 (53%), Gaps = 18/248 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F K+ A A+
Sbjct: 168 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAAEAVKL 227
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I T+E+I L+D+G EG++ + L
Sbjct: 228 CDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDP++MA
Sbjct: 285 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVAEPDPDVMAK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 342 VKVLFVRKLAIPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAM 393
Query: 388 NAINNKEF 395
+N KE
Sbjct: 394 AEMNGKEL 401
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 141/260 (54%), Gaps = 9/260 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ A+ ED++ + ERIGEV EVR+ K ++ NKG+ FV F + E A +A+ E
Sbjct: 126 EVYIGGIPH-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELASKAIEE 184
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+GN+ +W E +K+ + + G GV + LV D+++
Sbjct: 185 LNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIG-PGVTGVELVKDMKNT 243
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + +++ P G E V++A+P + + + VK V
Sbjct: 244 NNNRGFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAV 300
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ + +G + ++VL S ++ GF+ F+ A + A+
Sbjct: 301 YVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNA---MKALK 357
Query: 392 NKEFSDGNSKVKLRARLSNP 411
N E + ++ L+ L+ P
Sbjct: 358 NTERYELEGQL-LQCSLAKP 376
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
I H V++ G+P H + ++ + G+V + + + +++ K +GF+ F + E A
Sbjct: 120 IPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELA 178
Query: 384 VACINAINNKEF 395
I +NN EF
Sbjct: 179 SKAIEELNNTEF 190
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 12/227 (5%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
+DR+ +K E+F+GGL R AT+ +R++F GE+I+ R+ K+ + +KGY FV+FA +
Sbjct: 11 QDRRTEKGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSKGYGFVRFAKR 69
Query: 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDYGVEG 258
++A A + + GKR S D DT+F GN+C WT +E I + KD
Sbjct: 70 DYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVD 129
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAE 315
+ + + + ++RGF FV FS H A + + D + G HP + +A+
Sbjct: 130 LAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP----AINWAD 185
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
DP+ MA +K+ F+ +P E +R +G+V+R+ ++R
Sbjct: 186 KESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 12/227 (5%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
+DR+ +K E+F+GGL R AT+ +R++F GE+I+ R+ K+ + +KGY FV+FA +
Sbjct: 11 QDRRTEKGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSKGYGFVRFAKR 69
Query: 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDYGVEG 258
++A A + + GKR S D DT+F GN+C WT +E I + KD
Sbjct: 70 DYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVD 129
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAE 315
+ + + + ++RGF FV FS H A + + D + G HP + +A+
Sbjct: 130 LAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP----AINWAD 185
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
DP+ MA +K+ F+ +P E +R +G+V+R+ ++R
Sbjct: 186 KESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 134/243 (55%), Gaps = 7/243 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ +A++ED+R E +GEV EVR+ K + KGYAFV F KE A +A+ E
Sbjct: 93 EVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEE 152
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N I G++ + S+ LF+ N+ TW +E +K+ + + G GV ++L D Q+
Sbjct: 153 LNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNS 211
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + K++ P + T V++A+P + + + VK V
Sbjct: 212 SRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNAST--VSWADP-KNVESSAASQVKAV 268
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++Q+R+ +G + ++V+ + + +GF+ F+ +A + A+
Sbjct: 269 YIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSA---MKALK 325
Query: 392 NKE 394
N E
Sbjct: 326 NTE 328
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 139 NAIAKDRKIK-----KEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKN-FSTNRN 191
NA K RKIK +H +FI + R +ED++KV IG + V L K+ +++RN
Sbjct: 155 NAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGVNLVDLWKDPQNSSRN 214
Query: 192 KGYAFVKFANKEHAKRALTEMKNP 215
+G+AF+++ N A+ + +M NP
Sbjct: 215 RGFAFIEYYNHACAEYSRKKMSNP 238
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 323 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
E++A H V+L G+P + E +R + G+V + + + +A+ K Y F+ F T
Sbjct: 83 ELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRT 142
Query: 380 HEAAVACINAINNKEFSD-----GNSKVKLRARLSNPMPKT 415
E A + +NN E S+VK R +SN +P+T
Sbjct: 143 KELASKAMEELNNAEIKGRKIKCSASQVKHRLFISN-VPRT 182
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 238 YNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 296
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 353
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F AV +
Sbjct: 354 VLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMEE 405
Query: 390 INNKEFSDGNSKV 402
+N KE N ++
Sbjct: 406 MNGKELEGENIEI 418
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 260 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 319
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 320 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFGQFG-- 377
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F V A+ A + + ++ +++ FA+P
Sbjct: 378 KLERVKKLKD---------YAFIHFDERVGAVKAMEEMNGKEL----EGENIEIVFAKP 423
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 13/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G++ ++RL + + N+GYAFV F ++E A+ A+ +
Sbjct: 175 QVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S N LFVG+I T +K+ I ++ + V G+ ++ + +
Sbjct: 235 LDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKH-VGGLTDVIIYHMPED 293
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAF+ F H A A +RL + V+G+ V V +A+P EPD E MA VK
Sbjct: 294 RKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNS--NVTVDWADPQEEPDEETMAKVK 351
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + P +E ++++ + +G V R+ K KDY F+ F +AAV +
Sbjct: 352 VLYVRNLTPDAEEEKLKEAFQAFGTVERV--------KKLKDYCFVHFEERDAAVKAMEE 403
Query: 390 INNKEF 395
+N KE
Sbjct: 404 LNGKEV 409
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALT 210
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F NK+ A A+
Sbjct: 165 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKDAALEAVK 224
Query: 211 EMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSD 267
N I GK G S N+ LFVG+I T+E+I L+D+ EG+ + L
Sbjct: 225 LCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFSKVTEGLMEVILYHQ 281
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 326
+ +RGF F+ + H A A +RL V V+G+P V V +A+P+ EPDPEIMA
Sbjct: 282 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNP---VTVEWADPVDEPDPEIMA 338
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +F+ + E + +G + R+ K KDY F+ F +AAV
Sbjct: 339 KVKVLFVRNLATPVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEDRDAAVKA 390
Query: 387 INAINNKEF 395
+ +N KE
Sbjct: 391 MQEMNCKEL 399
>gi|224153375|ref|XP_002337347.1| predicted protein [Populus trichocarpa]
gi|222838882|gb|EEE77233.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+GGLD+ A +ED+RKVF + EV +VRL ++ + K AF+ FA E A+RA+ E
Sbjct: 22 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRL--SWDSESKKRVAFLTFATVELARRAICE 79
Query: 212 MKNPVICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ +PVI GKRC TA +D + TL+V NIC WTK+ ++ KL +YGV+ E + L ++
Sbjct: 80 ISDPVINGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPAREN 139
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+ +RG+A + F DA A + L+K +V FG R K F+ + EIM+HV
Sbjct: 140 KEKNRGYAHLDFRSGKDASEALELLKKENVSFGQ-NRAAKADFSRKYASGNDEIMSHV 196
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F NKE A+ A+
Sbjct: 65 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 124
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N + GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F +AAV ++
Sbjct: 241 VLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDE 292
Query: 390 INNKEF 395
+N E
Sbjct: 293 MNGTEL 298
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F NKE A+ A+
Sbjct: 68 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 127
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 128 CDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 186
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK
Sbjct: 187 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVK 243
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F +AAV ++
Sbjct: 244 VLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDE 295
Query: 390 INNKEF 395
+N E
Sbjct: 296 MNGTEL 301
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 310 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 369
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 370 YNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 428
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 429 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 485
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F AV +
Sbjct: 486 VLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMEE 537
Query: 390 INNKEFSDGNSKV 402
+N KE N ++
Sbjct: 538 MNGKELEGENIEI 550
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 392 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 451
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 452 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFGQFG-- 509
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F V A+ A + + ++ +++ FA+P
Sbjct: 510 KLERVKKLKD---------YAFIHFDERVGAVKAMEEMNGKEL----EGENIEIVFAKP 555
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F NKE A+ A+
Sbjct: 65 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 124
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N + GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLLDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPEIMA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEIMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F +AAV ++
Sbjct: 241 VLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRAMDE 292
Query: 390 INNKEF 395
+N E
Sbjct: 293 MNGAEL 298
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 162 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQQAVKL 221
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 222 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDD 280
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 281 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVK 337
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F E+AV +
Sbjct: 338 VLFVRNLASTVTEEILEKTFSQHGKLERV--------KKLKDYAFIHFEERESAVKALTD 389
Query: 390 INNKEF 395
+N K+
Sbjct: 390 LNGKDL 395
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 244 LFVGSIPKSKTKEQIVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 303
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ +T T+E +++ +G
Sbjct: 304 RLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEEILEKTFSQHG-- 361
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A L D+ H +++ FA+P
Sbjct: 362 KLERVKKLKD---------YAFIHFEERESAVKALTDLNGKDLEGEH----IEIVFAKP 407
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 145/267 (54%), Gaps = 9/267 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ DA++ED+R E +GEV EVRL K +N NK +AFV F + + A +A+ E
Sbjct: 114 EVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRFAFVTFRSVDLASKAIDE 173
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GKR + ++ LF+GNI +W +E +++ + + G GV + LV D++
Sbjct: 174 LNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVG-PGVTAVQLVKDMKTS 232
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
++GFAF+ + A + +++ PD G + V++AEP + D + VK +
Sbjct: 233 N-NKGFAFIDYYNTACAEYSRQKMVNPDFKLG--DNAPTVSWAEP-KNADSSASSQVKAI 288
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + ++Q++ + +G + ++VL ++ GF+ F+ +A + A+
Sbjct: 289 YVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSA---MKALK 345
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAV 418
N E + + +V + L+ P ++V
Sbjct: 346 NTERYELDGQV-VECSLAKPQADQKSV 371
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 21/270 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++ + +F R G++ E RL FS N+GYAFV + NKE A A+
Sbjct: 62 EVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMMEFS-GENRGYAFVMYTNKEEALLAIRM 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N IC GK G S DN LF+G+I KE I +++K EGV ++ +
Sbjct: 121 LNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFVM+ H AMA K + P ++GH T+KVA+A P +E D E M VK
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGH---TIKVAWASPEKEVDEETMQKVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + Y G V R+ K +DY F+ F + A+A +
Sbjct: 237 VLYVRNLMMSTTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRDYAIAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
+ +N + DG ++ L+ P+ K A
Sbjct: 289 SVMNGR-LIDG---ARIEVTLAKPVNKEAA 314
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 167 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 226
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 227 YNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 285
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+M+ VK
Sbjct: 286 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMSKVK 342
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F AV ++
Sbjct: 343 VLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMDE 394
Query: 390 INNKEFSDGNSKV 402
+N KE N ++
Sbjct: 395 MNGKELEGENIEI 407
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 249 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 308
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 309 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMSKVKVLFVRNLANTVTEEILEKAFGQFG-- 366
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F V A+ A + ++ +++ FA+P
Sbjct: 367 KLERVKKLKD---------YAFIHFDERVGAVKAMDEMNGKEL----EGENIEIVFAKP 412
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 7/304 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ DA++ED++ E +GEV EVR+ K ++ NKG+AFV F + + A +A+ E
Sbjct: 41 EVYIGGVPNDASEEDLKDFCESVGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGE 100
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GKR + S+ LF+ NI +W +E + + + + G G N+ LV +
Sbjct: 101 LNNTEFKGKRIKCSTSQAKHRLFLSNIPRSWGEEDLSKFVAEVG-PGTTNVQLVKVSESS 159
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+AFV + + +A A Y R + D F + V++A+P + D + VK +
Sbjct: 160 SNNRGYAFVEY--YNNACAEYSRQKMIDPKFKLGDNAPSVSWADP-KNADSSTSSQVKAI 216
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P ++Q++ + +G + ++VL S ++ GF+ F+ +A+ +
Sbjct: 217 YVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTE 276
Query: 392 NKEFSDGNSKVKLRARLSNPMPK--TQAVKGGMSGGFRIGHGSSRTFSRYGR-GSGRAGH 448
E + + + L S P + + G+ + G G S YG G+G
Sbjct: 277 KYELNGQSVECALAKPQSEQKPAGGSNLQRAGLLPAYPPGVGYGMMGSAYGALGAGYVAT 336
Query: 449 HFNR 452
F +
Sbjct: 337 GFTQ 340
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 207 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 266
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 267 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 325
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 326 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 382
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 383 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 434
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 435 MNGKDLEGENIEI 447
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 289 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 348
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 349 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 406
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 407 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 452
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + ++ N+GYAF+ F +KE A+ A+
Sbjct: 163 EIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALEE 390
Query: 390 INNKEF 395
+N KE
Sbjct: 391 MNGKEL 396
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 81/179 (45%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ N T+E +++ ++G
Sbjct: 305 RLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANGVTEELLEKSFSEFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + ++ G P +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFEERDGAVKALEEMNGKELE-GEP---IEIVFAKP 408
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQQAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYLQPVD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+PL +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPLEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLASSVTEELLEKAFSQFGKLERV--------KKLKDYAFIHFEERDGAVKALAD 390
Query: 390 INNKEF 395
+N K+
Sbjct: 391 LNGKDL 396
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 138/260 (53%), Gaps = 11/260 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ + +++D+R + +GEV EVR+ K KGYAFV F KE A +AL E
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKG---KEAKGYAFVTFKTKELASKALKE 158
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N G++ +PS+ LF+G++ WT E +K+ + G GV ++ L+ D Q
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVG-PGVISVELLKDPQSS 217
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A A Y R + + F V++A+P R + + VK V
Sbjct: 218 SRNRGFAFIEYHNH--ACAEYSRQKMSNSNFKLDNNDAIVSWADP-RNSESSSSSQVKAV 274
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + +N++++ + +G + ++ L + ++ YGF+ F+ +A + A+
Sbjct: 275 YVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSA---MKALK 331
Query: 392 NKEFSDGNSKVKLRARLSNP 411
N E + N + L L+ P
Sbjct: 332 NTEKYEINGQT-LECSLAKP 350
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 89
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 205
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 206 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 257
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 258 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 291
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 292 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 348
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 349 RAPSVRGAAGV 359
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 89
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 205
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 206 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 257
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 258 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 291
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 292 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 348
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 349 RAPSVRGAAGV 359
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 301 MNGKDLEGENIEI 313
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 155 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 214
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 215 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 272
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 273 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 318
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 89
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 205
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 206 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 257
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 258 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 291
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 292 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 348
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 349 RAPSIRGAAGV 359
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 156/316 (49%), Gaps = 11/316 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ DA++ED+R E +GEV EVR+ + ++ N+G+AFV F + + A A+ E
Sbjct: 110 EVYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGE 169
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+ NI +W ++ +++ + + G GV N+ LV + +
Sbjct: 170 LNNTEFKGKKIKCSTSQAKHRLFLSNIPRSWGEDGLRKIVAEVG-PGVTNVQLVKE-KSS 227
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+AF+ + + +A A Y R + D F + V++A+P + D + VK +
Sbjct: 228 SNNRGYAFIEY--YNNACAEYSRQKMMDPKFKLGDNAPAVSWADP-KNADSSASSQVKAL 284
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P ++Q++ + +G + ++VL S ++ GF+ F+ +A+ +
Sbjct: 285 YVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTE 344
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGSGRAGHH 449
E DG + L+ P + +A G + G G+ + G G G
Sbjct: 345 KYEL-DGQ---LVECALAKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAG 400
Query: 450 FNRANFQRGRGFYQHG 465
+ A F + Y G
Sbjct: 401 YVTAGFAQQPLIYGSG 416
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 98 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 157
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 158 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 216
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 217 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 273
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 274 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 325
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 326 MNGKDLEGENIEI 338
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 178 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 237
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 238 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG 297
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA+
Sbjct: 298 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAK 342
Query: 316 P 316
P
Sbjct: 343 P 343
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 249 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 301 MNGKDLEGENIEI 313
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 155 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 214
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 215 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 272
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 273 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 318
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 18/261 (6%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+G L RD ++++ V E+ G + E+RL +F+ N N+G+AFVK+ A+ A
Sbjct: 100 KGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMDFNGN-NRGFAFVKYCAASEARAA 158
Query: 209 LTEMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
L ++ N + G+ G S DN LFVG I T KE I ++K EGV ++ +
Sbjct: 159 LKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKV-TEGVCDVIVYPS 217
Query: 268 IQHEGLSRGFAFVMFS-CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
+ +RGFAFV + H AMA K + ++GHP + V +AEP E D +IMA
Sbjct: 218 AADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHP---IAVDWAEPEVEVDDDIMA 274
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
VK +++ + + E Q+ + G + R+ K +DYGF+ F+T E A
Sbjct: 275 TVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERV--------KKIRDYGFVHFNTRENA 326
Query: 384 VACINAINNKEFSDGNSKVKL 404
+ C+ +N K +V L
Sbjct: 327 IKCLKQLNGKILDGSPMEVTL 347
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 173/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+N++ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQEAKDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKML-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R + +G Y G + ++ +G + YT F +G R
Sbjct: 318 ---GRGSMLQGEYTYSLGHVYDPTTTYLGAPVFYAPQAYTAIPSLHFPATKGHLGNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + ++ N+GYAFV F KE A+ A+
Sbjct: 170 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQEAVKL 229
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ +G+ ++ L
Sbjct: 230 CNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKV-TDGLNDVILYHQPDD 288
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ F H A A +RL V V+G V V +A+P+ +PDPE+MA VK
Sbjct: 289 KKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGI---LVTVEWADPIEDPDPEVMAKVK 345
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F E AV ++
Sbjct: 346 VLFVRNLANSVTEEILEKSFSAFGKLERV--------KKLKDYAFIHFEEREGAVKALDE 397
Query: 390 INNKEF 395
+N KE
Sbjct: 398 MNGKEL 403
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 238 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 296
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 353
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 354 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 406 MNGKDLEGENIEI 418
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 260 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 319
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 320 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 377
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 378 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 423
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +FS N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFSGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFNNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV +N
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F +K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I TKE I L+++G EG+ ++ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENI---LEEFGKVTEGLVDVILYHQP 282
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 283 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 339
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
Query: 388 NAINNK 393
N +N K
Sbjct: 392 NEMNGK 397
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 236 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 295
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 296 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 354
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 355 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 411
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 412 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 463
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 464 MNGKDLEGENIEI 476
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 318 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 377
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 378 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 435
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 436 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 481
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 199 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 258
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 259 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 317
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 318 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 374
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 375 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 427 MNGKDLEGENIEI 439
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 281 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 340
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 341 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 398
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 399 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 444
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 214 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 273
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 274 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 332
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 333 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 389
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 390 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 441
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 442 MNGKDLEGENIEI 454
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 296 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 355
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 356 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 413
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 414 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 459
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 279 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 335
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 336 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 388 MNGKDLEGENIEI 400
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 242 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 301
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 302 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 359
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 360 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 405
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G + ++ +G + YT F +G R
Sbjct: 318 ---GRGTMLQGEYTYSLGHVYDPTTAYLGAPVFYAPQAYTAIPSLHFPTTKGHLGNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSQVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 265 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 324
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 325 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 383
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 384 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 440
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 441 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 492
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 493 MNGKDLEGENIEI 505
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 347 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 406
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 407 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 464
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 465 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 510
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 172/373 (46%), Gaps = 55/373 (14%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTGGRG 320
Query: 448 HHFNRANFQRGRGFYQHGRNH-----SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRG 501
+G Y + H ++ +G + YT F +G R
Sbjct: 321 AML--------QGEYTYSLGHVYDPTTTYLGAPVFYAPQAYTAIPSLHFPTTKGHLGNRA 372
Query: 502 GYNAPS-RAAAGA 513
APS R AAG
Sbjct: 373 IIRAPSVRGAAGV 385
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 293 MNGKDLEGENIEI 305
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 145 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 204
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 205 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA+
Sbjct: 265 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAK 309
Query: 316 P 316
P
Sbjct: 310 P 310
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 135 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 194
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 195 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 253
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 254 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 310
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 311 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 362
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 363 MNGKDLEGENIEI 375
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 215 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 274
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 275 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 334
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA+
Sbjct: 335 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAK 379
Query: 316 P 316
P
Sbjct: 380 P 380
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 293 MNGKDLEGENIEI 305
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 145 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 204
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 205 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 264
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA+
Sbjct: 265 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAK 309
Query: 316 P 316
P
Sbjct: 310 P 310
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 172/373 (46%), Gaps = 55/373 (14%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTGGRG 320
Query: 448 HHFNRANFQRGRGFYQHGRNH-----SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRG 501
+G Y + H ++ +G + YT F +G R
Sbjct: 321 AML--------QGEYTYSLGHIYDPTTTYLGAPVFYAPQAYTAIPSLHFPATKGHLGSRA 372
Query: 502 GYNAPS-RAAAGA 513
APS R AAG
Sbjct: 373 IIRAPSVRGAAGV 385
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 92 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 151
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 152 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 210
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 211 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 267
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 268 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 319
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 320 MNGKDLEGENIEI 332
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 172 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 231
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 232 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG 291
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA
Sbjct: 292 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAN 336
Query: 316 P 316
P
Sbjct: 337 P 337
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 134/257 (52%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVKAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
A+N K +V L
Sbjct: 284 KALNGKVLDGSPIEVTL 300
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 60 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 118
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 119 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 177
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 178 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 234
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 235 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 286
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 287 KALNGKML-DGSP---IEVTLAKPVDKDSYVR 314
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 13/242 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL RD + +DVR++ E +G+++E++L K+ T +KGYAFV + KE A++A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK SE LF+GNI TWT++ ++ ++ G GVE+I+L+ D Q++
Sbjct: 165 IHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVESIDLIKDPQNQ 223
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH---- 327
+RGFAFV++ + +A A + R + V F T V +A+P PD A
Sbjct: 224 SRNRGFAFVLY--YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQFYR 281
Query: 328 --VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
V+ V L G ++Q +Q+ V + + R MS R D D VA
Sbjct: 282 TAVQPVLLYGTECWAVKSQHENQV----SVAEMRMLRWMSGKTRHDRIRNDTIRERVGVA 337
Query: 386 CI 387
I
Sbjct: 338 PI 339
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
H VF+ G+P ++ +R+ + GD++ I L ++ T + K Y F+ + T E A
Sbjct: 102 HGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKA 161
Query: 387 INAINNKEFSDGN-----SKVKLRARLSNPMPKT 415
I+ I+NKEF S+ K R + N +PKT
Sbjct: 162 IDDIHNKEFKGKTLRCLLSETKHRLFIGN-IPKT 194
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 238 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 296
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 353
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 354 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 406 MNGKDLEGENIEI 418
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 260 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 319
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 320 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 377
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 378 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 423
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A++ K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALHGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G + ++ +G + YT F +G R
Sbjct: 318 ---GRGTMLQGEYTYSLGHVYDPTTTYLGAPVFYTPQAYTAIPSLHFPATKGHLGNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F +K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I GK G S N+ LFVG+I TKE I L+++G EG+ ++ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENI---LEEFGKVTEGLVDVILYHQP 282
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 283 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 339
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
Query: 388 NAINNK 393
N +N K
Sbjct: 392 NEMNGK 397
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 16/260 (6%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+G L RD T++++ VFER+G + E+R+ +F+ + N+GYAFV F +KE AKRA
Sbjct: 82 KGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFNGS-NRGYAFVTFCDKEQAKRA 140
Query: 209 LTEMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
++ + G+ G S DN L+V I ++E ++ ++ +GV ++ L
Sbjct: 141 CQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARL-TDGVVDVILYPS 199
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGFAF+ + H A A ++L + E TV +AEP R+ D E MA
Sbjct: 200 AMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVD--WAEPERDVDEETMAQ 257
Query: 328 VKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
VK +++ + H E +R + I G G V R+ K +DY F+ FS E A+
Sbjct: 258 VKKLYVRNLMMHTTEEHLREVVEAISGTGTVERV--------KKIRDYAFVHFSRREDAI 309
Query: 385 ACINAINNKEFSDGNSKVKL 404
A+N ++ +VKL
Sbjct: 310 RVQEALNGQDLDGSVVEVKL 329
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 279 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 335
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 336 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 388 MNGKDLEGENIEI 400
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 242 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 301
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 302 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 359
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 360 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 405
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F +K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV +N
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 15/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGV-EGVENINLVSDI 268
N I GK G S N+ LFVG+I + TKE I ++ K G+ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVILYHQP 282
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA
Sbjct: 283 DDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAK 339
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 340 VKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAM 391
Query: 388 NAINNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 392 EEMNGKDLEGENIEI 406
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE-----VRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+F+G + + T+E + + F ++ + E + H+ +N+G+ F+++ + + A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQ 304
Query: 208 ALTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDY 254
A M V GT P ED D LFV N+ NT T+E +++ +
Sbjct: 305 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQF 364
Query: 255 GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
G +E + + D +AF+ F A+ A + + D+ +++ FA
Sbjct: 365 G--KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFA 409
Query: 315 EP 316
+P
Sbjct: 410 KP 411
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ FE+ G + ++RL + + N+GYAF+ F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---LVTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G++ R+ K KDY F+ F+ + AV +
Sbjct: 339 VLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKALTE 390
Query: 390 INNKEF 395
+N KE
Sbjct: 391 MNGKEL 396
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ N+ T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AFV F+ A+ A + ++ H +++ FA+P
Sbjct: 363 NLERVKKLKD---------YAFVHFNDRDGAVKALTEMNGKELEGEH----IEIVFAKP 408
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 135/258 (52%), Gaps = 19/258 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+ G++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AM K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
+++ + E I D IK G V R+ K +DY F+ F+ E AV
Sbjct: 232 ILYVRNLMLSTSEETIEKEFDSIKP-GSVERV--------KKIRDYAFVHFNNREDAVNA 282
Query: 387 INAINNKEFSDGNSKVKL 404
+ A+N K +V L
Sbjct: 283 MKALNGKVLDGSPIEVTL 300
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A A+
Sbjct: 174 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAASEAVNL 233
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 234 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDD 292
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 293 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 349
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F +AAV +
Sbjct: 350 VLFVRNLANSVTEEILEKSFSQFGKLERV--------KKLKDYAFVHFDERDAAVKALAQ 401
Query: 390 INNK 393
+N K
Sbjct: 402 MNGK 405
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 33/175 (18%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 256 LFVGSIPKSKTKEQIVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 315
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ N+ T+E +++ +G
Sbjct: 316 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSQFG-- 373
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL-------QKPDVVFGHP 305
+E + + D +AFV F A+ A ++ + D+VF P
Sbjct: 374 KLERVKKLKD---------YAFVHFDERDAAVKALAQMNGKVLEGEHIDIVFAKP 419
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 129
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 130 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 186
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 238
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 239 MNGKDLEGENIEI 251
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 93 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 152
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 153 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 210
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 211 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 256
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 168/364 (46%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS 507
APS
Sbjct: 375 RAPS 378
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 23/275 (8%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+GGL R AT+ +R+VF GE++++R+ K+ +KG+ FV+FA +E A A
Sbjct: 68 KGTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYTA 126
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKD-YGVEGVENIN 263
+ + GKR S D DTLF GN+C W+ +E I + KD V+ N
Sbjct: 127 KRQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASN 186
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEPLREP 320
L S L+RGFAFV FS H A + + D + G HP + +AE
Sbjct: 187 LDSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHP----AINWAERESNV 242
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY--GFIDFS 378
D MA +KT F+ +P + E+ ++ +G+V+R+ ++R + +Y GFI F
Sbjct: 243 DAGEMAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAVSR------KGEYPVGFIHFG 296
Query: 379 THEAAVACINAINNKEFS--DGNSKVKLRARLSNP 411
+ I ++ K S D K++ ++ P
Sbjct: 297 SRSELDNAIKEMDGKTVSGPDRGPAFKIQVSVARP 331
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 168/364 (46%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS 507
APS
Sbjct: 375 RAPS 378
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 129
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 130 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 186
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 238
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 239 MNGKDLEGENIEI 251
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 93 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 152
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 153 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 210
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 211 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 256
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E++G++ E+R+ +F+ N N+GYAFV F+N++ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMDFNGN-NRGYAFVTFSNRQEAKDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSSREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 149/304 (49%), Gaps = 40/304 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+N++ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQEAKDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G G
Sbjct: 284 KALNGKML-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTGGRG 320
Query: 448 HHFN 451
Sbjct: 321 SMLQ 324
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 129
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 130 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 186
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 238
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 239 MNGKDLEGENIEI 251
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 91 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 150
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 151 RRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG 210
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+E + + D +AF+ F A+ A + + D+ +++ FA+
Sbjct: 211 --KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAK 255
Query: 316 P 316
P
Sbjct: 256 P 256
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 19/270 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +FS N N+GYAFV F+NK+ AK A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMMDFSGN-NRGYAFVTFSNKQEAKAAMKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ EGV ++ +
Sbjct: 117 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TEGVVDVIVYPSAAD 175
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I + +V R+ K +DY F+ F+ E A+ +
Sbjct: 233 ILYVRNLMLQTTEETIEKEFNSLKEVERV--------KKIRDYAFVHFAQREDAIHAMKE 284
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 285 LNGK-VVDGSP---IEVTLAKPVDKDSYVR 310
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 390 INNK 393
+N K
Sbjct: 293 MNGK 296
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 145 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 204
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 205 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 264
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 265 --KLERVKKLKD---------YAFVHFEDRGAAVKA 289
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +R F F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+ + F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 134/257 (52%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+N++ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E A+ +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAMEAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
A+N K +V L
Sbjct: 284 KALNGKVLDGSPIEVTL 300
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 140/270 (51%), Gaps = 17/270 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I + I K +DY F+ FS E AV + A
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFN------SIKPGAVERVKKIRDYAFVHFSNREDAVEAMKA 285
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N K DG+ + L+ P+ K V+
Sbjct: 286 LNGKVL-DGS---PIEVTLAKPVDKDSYVR 311
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 390 INNK 393
+N K
Sbjct: 293 MNGK 296
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 145 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 204
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 205 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 264
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 265 --KLERVKKLKD---------YAFVHFEDRGAAVKA 289
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 390 INNK 393
+N K
Sbjct: 293 MNGK 296
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 145 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 204
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 205 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 264
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 265 --KLERVKKLKD---------YAFVHFEDRGAAVKA 289
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 140 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 199
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 200 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 258
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 259 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 315
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 316 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 367
Query: 390 INNK 393
+N K
Sbjct: 368 MNGK 371
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 220 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 279
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 280 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 339
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 340 --KLERVKKLKD---------YAFVHF 355
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 149 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 208
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 209 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 267
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 268 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 324
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 325 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 376
Query: 390 INNK 393
+N K
Sbjct: 377 MNGK 380
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 229 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 288
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 289 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 348
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 349 --KLERVKKLKD---------YAFVHF 364
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 168/364 (46%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSLVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNVKPGAVERV--------KKIRDYAFVHFSHREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
RA +G Y G + ++ +G + Y F +G S R
Sbjct: 318 ---GRATMLQGDYTYSLGHVYDPTAAYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS 507
APS
Sbjct: 375 RAPS 378
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEEVIEKEFNNIKPGAVERV--------KKIRDYAFVHFTNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 203 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 262
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 263 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 321
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 322 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 378
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 379 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 430
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 431 MNGKDLEGENIEI 443
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 285 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 344
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 345 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 402
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 403 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 448
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 123
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 239
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 240 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 291
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 292 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 325
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 326 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 382
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 383 RAPSVRGAAGV 393
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A++ K DG+ + L+ P+ K V+
Sbjct: 284 KALHGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 42 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 100
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 101 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 159
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 160 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 216
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 217 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 268
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 269 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 296
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 199 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 258
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 259 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 317
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 318 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 374
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 375 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 427 MNGKDLEGENIEI 439
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 281 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 340
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 341 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 398
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 399 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 444
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+ K+ AK A+ +
Sbjct: 57 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAKNAMKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + MA VK
Sbjct: 175 KAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E A+ +
Sbjct: 232 ILYVRNLMLPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
NA+N K +V L
Sbjct: 284 NALNGKVIDGSPIEVTL 300
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEIIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +R F F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+ + F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 123
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 239
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 240 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 291
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 292 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 325
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 326 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 382
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 383 RAPSVRGAAGV 393
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 19/265 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE G + EVRL +F+ +N+GYAFV + +K+ AKR +
Sbjct: 58 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRGYAFVVYTSKDDAKRCVKT 116
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I +C G S DN LFVG I K+ I ++ + V ++ + Q
Sbjct: 117 LNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKV-TDNVVDVIVYPSAQD 175
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H DA A ++L + ++GH + V +AEP +E D EIM VK
Sbjct: 176 KTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGH---QIAVDWAEPEQEVDQEIMDQVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
++ + E I +G+V R+ K KDY FI F T E A + A
Sbjct: 233 VLYARNLLLSTTEETIEQAFSKFGEVERV--------KKIKDYCFIHFRTKEQARDAMEA 284
Query: 390 INNKEFSDGNSKVKLRARLSNPMPK 414
+N E DGN ++ L+ P+ K
Sbjct: 285 MNETEL-DGN---EIEVTLAKPVDK 305
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+ K+ AK A+ +
Sbjct: 57 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAKNAMKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + MA VK
Sbjct: 175 KAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMATVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E A+ +
Sbjct: 232 ILYVRNLMLPTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFSQREDAINAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
NA+N K +V L
Sbjct: 284 NALNGKVIDGSPIEVTL 300
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 184
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 185 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 241
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 242 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 293
Query: 388 NAINNK 393
+ +N K
Sbjct: 294 DEMNGK 299
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN-RNKGYAFVKFANKEHAKRALT 210
E+F+GG+ R AT++ ++ E +GEV V L K+ N +N+G+ FVKF + A AL
Sbjct: 78 EVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAATDALE 137
Query: 211 EMKNPVIC---GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
++ + G+ APS+ L+VGNI +K+ +K +L D V+GVE I L+
Sbjct: 138 KLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAEL-DAVVKGVEVIELLMS 196
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
++ G +RGFAF+ F H A A L P + R++ VA+AEP + D
Sbjct: 197 KEYPGNNRGFAFIEFYNHACAQLAKNALSAP--TYTMHGRSLNVAYAEP-KGADQVPTQQ 253
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
VK+V++ +P E ++++ + +G+V ++V+ + +++GF+ FS
Sbjct: 254 VKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFS 304
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 77/152 (50%), Gaps = 21/152 (13%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERI---GEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204
+ +H++++G + RD +++ ++ + + EVIE+ + K + N N+G+AF++F N
Sbjct: 158 QSKHKLYVGNIPRDLSKDTLKAELDAVVKGVEVIELLMSKEYPGN-NRGFAFIEFYNHAC 216
Query: 205 AKRALTEMKNP--VICGKRCGTA----------PSEDNDTLFVGNICNTWTKEAIKQKLK 252
A+ A + P + G+ A P++ +++VGN+ + + +K+ +
Sbjct: 217 AQLAKNALSAPTYTMHGRSLNVAYAEPKGADQVPTQQVKSVYVGNLPASANEAKLKELFE 276
Query: 253 DYG-VEGVENINLVSDIQHEGLSRGFAFVMFS 283
+G V V ++ + + +R F FV FS
Sbjct: 277 QFGEVTKV----VIPPSRPDKPNREFGFVHFS 304
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYG 373
+P+ EP H VF+ G+P E+Q++ + G+V +VL ++ + + + +G
Sbjct: 68 DPMSEPP-----HGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFG 122
Query: 374 FIDFSTHEAAVACINAINNKEFSD 397
F+ F T AA + + K+ +D
Sbjct: 123 FVKFKTRAAATDALEKLAGKQLAD 146
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 169/370 (45%), Gaps = 50/370 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKT 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTTEETIEKEFNSIKPGAVERV--------KKIRDYAFVHFNKREHAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQFIGRGGRSFRGGYN 504
RA +G Y G + ++ +G + Y F G R
Sbjct: 318 ---GRAPVLQGDYTYTLGHLYDPTAAYLGAPVFYAPQAYAAIPNLHFPAAKGLGSRSILR 374
Query: 505 APS-RAAAGA 513
PS R AAG
Sbjct: 375 PPSVRGAAGV 384
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 195 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 253
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 254 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 310
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 311 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 362
Query: 390 INNK 393
+N K
Sbjct: 363 MNGK 366
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 215 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 274
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 275 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 334
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 335 --KLERVKKLKD---------YAFVHF 350
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 144 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 203
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 204 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 262
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 263 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 319
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 320 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 371
Query: 390 INNK 393
+N K
Sbjct: 372 MNGK 375
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 138 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 197
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 198 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 256
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 257 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 313
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 314 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 365
Query: 390 INNK 393
+N K
Sbjct: 366 MNGK 369
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +FS N N+GYAFV F+NK+ AK A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFSGN-NRGYAFVTFSNKQEAKAAMKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ +GV ++ +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TDGVLDVIVYPSAAD 175
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E A+ +
Sbjct: 233 ILYVRNLMLQTTEETIEKEFNSLKQGAVERV--------KKIRDYAFVHFTQREDAIHAM 284
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
NA+N K DG+ + L+ P+ K V+
Sbjct: 285 NALNGK-VVDGSP---IEVTLAKPVDKDSYVR 312
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 285
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 286 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 342
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 343 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 394
Query: 388 NAINNK 393
+ +N K
Sbjct: 395 DEMNGK 400
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +F++ G + ++RL + + +N+GYAF+ F K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNKEF 395
+N KE
Sbjct: 394 MNGKEL 399
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 143 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 202
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 203 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 262
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 263 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 319
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 320 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 371
Query: 388 NAINNK 393
+ +N K
Sbjct: 372 DEMNGK 377
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 283 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 339
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 340 VLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAE 391
Query: 390 INNKEF 395
++ K+
Sbjct: 392 LHGKDL 397
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS + AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 283 KKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 339
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 340 VLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAE 391
Query: 390 INNKEF 395
++ K+
Sbjct: 392 LHGKDL 397
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 285
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 286 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 342
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 343 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 394
Query: 388 NAINNK 393
+ +N K
Sbjct: 395 DEMNGK 400
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ EVR+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AM K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E + + G V R+ K +DY F+ F+ + AV +
Sbjct: 232 ILYVRNLMLSTSEETLEKEFNSIKPGSVERV--------KKIRDYAFVHFNNRDDAVNAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTTEETIEKEFNNIKPGAVERV--------KKIRDYAFVHFNKREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS + AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 18/258 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE IG++ E+RL +F+ N N+GYAFV + +++ AKRA+ +
Sbjct: 60 EVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDFNGN-NRGYAFVMYTSRDDAKRAVKQ 118
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I K I +++ EGV ++ +
Sbjct: 119 LNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVDVIVYPSATD 177
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP E D +IM VK
Sbjct: 178 KTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEVEVDEDIMKSVK 234
Query: 330 TVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
+++ + E +++ + G V R+ K +DY F+ F T E AV
Sbjct: 235 VLYVRNLLLTTTEESLKESFENVVSPGSVERV--------KKIRDYAFVHFKTREEAVKA 286
Query: 387 INAINNKEFSDGNSKVKL 404
+NA N + +V L
Sbjct: 287 MNATNGQLIDGCQVEVTL 304
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 145
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 146 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 202
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 203 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 254
Query: 390 INNK 393
+N K
Sbjct: 255 MNGK 258
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKR 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 241 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 293 MNGKDLEGENIEI 305
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 147 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 206
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 207 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 264
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 265 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 310
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNAIRQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSAVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTTEETIEKEFSSIKPGSVERV--------KKIRDYAFVHFNNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
+N K KV L
Sbjct: 284 KVLNGKMVDGSPIKVTL 300
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS + A+ +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRDDAIEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 229
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 230 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 286
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 287 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 338
Query: 390 INNK 393
+N K
Sbjct: 339 MNGK 342
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 191 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 250
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 251 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 310
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 311 --KLERVKKLKD---------YAFVHF 326
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 390 INNK 393
+N K
Sbjct: 293 MNGK 296
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ EVR+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AM K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E + + G V R+ K +DY F+ F+ + AV +
Sbjct: 232 ILYVRNLMLSTSEETLEKEFNSIKPGSVERV--------KKIRDYAFVHFNNRDDAVNAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
A+N K +V L
Sbjct: 284 KALNGKVLDGSPIEVTL 300
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS + A+ +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRDDAIEAM 283
Query: 388 NAINNKEFSDGNSKVKL 404
A+N K +V L
Sbjct: 284 KALNGKVLDGSPIEVTL 300
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 9/270 (3%)
Query: 157 GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216
G+ T+ED+R++ E +GE+ EVRL K+ T NKG+AFV F K+ A+ A+ E+ +
Sbjct: 18 GVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 77
Query: 217 ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 276
G+ + S+ LFVGN+ ++E + +K G GV NI + D+ + +RG
Sbjct: 78 HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRG 136
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-----LREPDPEIMAHVKTV 331
F FV + H A A ++L PD F + V++AEP A VKT+
Sbjct: 137 FLFVEYYNHACADYARQKLSSPD--FKVDGSQLTVSWAEPKGSSSSSSDSSSPAAQVKTI 194
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + +++D + +G+V +IVL + KR D+GF+ F+ +A+ +
Sbjct: 195 YVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGSE 253
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421
E +V + LS+ P GG
Sbjct: 254 KYEIDGQVLEVSMAKPLSDKKPDHSFKPGG 283
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 171/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 40 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 98
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 99 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 157
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 158 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 214
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS + AV +
Sbjct: 215 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNRKDAVEAM 266
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 267 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 300
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 301 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 357
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 358 RAPSVRGAAGV 368
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKR 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 240
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 241 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 293 MNGKDLEGENIEI 305
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + +V L H+ +N+G+ F+++ + + A +A
Sbjct: 147 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 206
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 207 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 264
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 265 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 310
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 14/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F KE A++A+
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TK+ I ++ EG+ ++ L
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK
Sbjct: 283 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVK 339
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 340 VLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALAE 391
Query: 390 INNKEF 395
++ K+
Sbjct: 392 LHGKDL 397
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 129
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RG F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 130 KKKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 186
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 238
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 239 MNGKDLEGENIEI 251
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G F+++ + + A +A
Sbjct: 93 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARR 152
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 153 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 210
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 211 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 256
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 146/281 (51%), Gaps = 25/281 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + ++RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFD-GKNRGYAFVMYTHKREAKRAVRE 129
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I ++ I +++ EGV ++ + +
Sbjct: 130 LDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKV-TEGVLDVIVYASATD 188
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAF+ + H A A ++L + ++G + V +AEP + D ++M VK
Sbjct: 189 KTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQ---QIAVDWAEPEMDVDEDVMETVK 245
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E IR +G V R+ K +DY F+ F++ E A+ +N+
Sbjct: 246 ILYVRNLMIKTSEETIRKTFSQFGCVERV--------KKIRDYAFVHFTSREDAIRAMNS 297
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSG 424
+N E +G+ L L+ P+ K Q AVKG ++
Sbjct: 298 LNGTEL-EGSC---LGVTLAKPVDKEQYARYRKAVKGSVTA 334
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|224133754|ref|XP_002327672.1| predicted protein [Populus trichocarpa]
gi|222836757|gb|EEE75150.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 87/130 (66%), Gaps = 3/130 (2%)
Query: 472 MGPTEYDFDNRYTEFHGRQFIGRGGRSFRGGYNAPSRAAAGAGPSRSNPTRLWPDGPDRG 531
M P EYD+++RY HGRQ RG GGY+ R AGPSRSN R W D P+RG
Sbjct: 1 MVPHEYDYNDRYDMLHGRQGGRRGTFR--GGYHTAGRGMT-AGPSRSNMNRAWHDIPERG 57
Query: 532 YGEHHSYRRQPFSQGEDFDRPFIGRQVDDPYFYDDRAHGVKRSFHVMDHEPDYMGPRRFR 591
+ +H S RRQPFS E FDR F+GR DDPYFYDD HG+KR F++ D +PDYM P R R
Sbjct: 58 HRDHVSSRRQPFSPEEAFDRRFVGRHFDDPYFYDDGPHGMKRPFYMTDQDPDYMEPSRLR 117
Query: 592 PRLDYNDPVI 601
PRLDY+DP +
Sbjct: 118 PRLDYSDPRL 127
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 15/254 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHV- 328
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA V
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVM 338
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 390
Query: 389 AINNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 EMNGKDLEGENIEI 404
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND---------TLFVGNICNTWTKEAIKQKLKDYGV 256
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVMKVLFVRNLANTVTEEILEKAFSQFG- 363
Query: 257 EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 364 -KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 409
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNK 393
+N K
Sbjct: 356 MNGK 359
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 167/364 (45%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS 507
APS
Sbjct: 375 RAPS 378
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNK 393
+N K
Sbjct: 356 MNGK 359
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNK 393
+N K
Sbjct: 356 MNGK 359
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 146
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA
Sbjct: 147 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAK 203
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +F+ + E + +G + R+ K KDY F+ F AAV +
Sbjct: 204 VKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 255
Query: 388 NAINNK 393
+ +N K
Sbjct: 256 DEMNGK 261
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF G I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNK 393
+N K
Sbjct: 356 MNGK 359
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ EGV + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKV-TEGVVEVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E AV +
Sbjct: 232 ILYVRNLMLSTSEETIEREFNNIKPGAVERV--------KKIRDYAFVHFNNREDAVGAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF G I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 147/286 (51%), Gaps = 24/286 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VF +G + E+RL +FS N N+GYAFV + NKE AK+A+ +
Sbjct: 76 EIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDFSGN-NRGYAFVMYTNKEDAKKAIKQ 134
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I ++ I +++ EGV ++ +
Sbjct: 135 LNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKV-TEGVVDVIVYPSATD 193
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP +E D +IM VK
Sbjct: 194 KTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEQEVDEDIMKTVK 250
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + + E I + G V R+ K +DY F+ F T E A+ +
Sbjct: 251 VLYVRNLMLNTTEETIEKEFNSLKEGSVERV--------KKIRDYAFVHFVTREDALYAL 302
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAV---KGGMSGGFRIGH 430
NA+N DG+ + L+ P+ + V +GG G F G+
Sbjct: 303 NAMNGHNV-DGSV---VEVVLAKPVDRENYVRYTRGGARGTFSQGY 344
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 246
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 247 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 303
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 304 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 355
Query: 390 INNK 393
+N K
Sbjct: 356 MNGK 359
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++IGG+ A+ ED++ + ERIGEV EVR+ K ++ NKG+ FV F + E A +A+ E
Sbjct: 130 EVYIGGIPH-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEE 188
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ LF+GN+ +W E +K+ + + G ++N N
Sbjct: 189 LNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGDMKNTN-------- 240
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+ + H A + +++ P G E V++A+P + + + VK V
Sbjct: 241 -NNRGFAFIDYYNHACAEYSRQKMMSPTFKLG--ENAPTVSWADP-KNAESSAASQVKAV 296
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
++ +P + + Q++ + +G + ++VL S ++ GF+ F+ A+ +
Sbjct: 297 YVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKAL 352
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
H V++ G+P H + ++ + G+V + + + +++ K +GF+ F++ E A
Sbjct: 127 HGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKA 185
Query: 387 INAINNKEF 395
I +NN EF
Sbjct: 186 IEELNNTEF 194
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F K+ A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF G I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 141/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K F DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGK-FIDGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 167/364 (45%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 50 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 108
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 109 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 167
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 168 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 224
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 225 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 276
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 277 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 310
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 311 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 367
Query: 504 NAPS 507
APS
Sbjct: 368 RAPS 371
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 167/364 (45%), Gaps = 50/364 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 123
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 239
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 240 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 291
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 292 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 325
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 326 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAII 382
Query: 504 NAPS 507
APS
Sbjct: 383 RAPS 386
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 140/267 (52%), Gaps = 20/267 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G L RD ++++ VFE++G + E+RL +++ +N+GY FV + + A+RA+
Sbjct: 89 EVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMDYN-GQNRGYGFVIYLSSRDAQRAVRT 147
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I R G S DN LF+G I K+ I +++ + V N+ +
Sbjct: 148 LNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKV-TDSVVNVIVYPSATD 206
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV ++CH A A ++L + ++GHP + V +AEP ++ D +IM VK
Sbjct: 207 KSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHP---IAVDWAEPEQDIDEDIMDQVK 263
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + + E I + K + +V R+ K KDY F+ F T E A + +
Sbjct: 264 VLYIRNLQLNTTEETIENLFKKFAEVERV--------KKIKDYCFVHFVTREGARLALES 315
Query: 390 I--NNKEFSDGNSKVKLRARLSNPMPK 414
+ NN E DG K+ L+ P+ K
Sbjct: 316 VKANNGESIDG---AKIEVTLAKPVDK 339
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 170/377 (45%), Gaps = 63/377 (16%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL-----QKPDVV---------FGHPERTVKVAFAEP 316
+ +RGFAFV + H A A ++L P +V +GHP + V +AEP
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHP---IAVDWAEP 231
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGF 374
E D + M+ VK +++ + E I + G V R+ K +DY F
Sbjct: 232 EVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAF 283
Query: 375 IDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSR 434
+ FS E AV + A+N K DG+ + L+ P+ K
Sbjct: 284 VHFSNREDAVEAMKALNGKVL-DGSP---IEVTLAKPVDKD------------------- 320
Query: 435 TFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF 491
++ RY RG+G R +G Y G+ + ++ +G + Y F
Sbjct: 321 SYVRYTRGTG------GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHF 374
Query: 492 -IGRGGRSFRGGYNAPS 507
+G S R APS
Sbjct: 375 PATKGHLSNRAIIRAPS 391
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 138/257 (53%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ + RD ++++ +FE+ G + ++RL + + +N+GYAFV + KE A+ A+ +
Sbjct: 155 QVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTYTTKESAQDAVKQ 214
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I G+ G S N+ LFVG+I +K+ I ++G G++++ +
Sbjct: 215 LDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEI---FDEFGKVTNGLKDVIIYYMP 271
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ + +RGFAF+ + H +A A +RL + V+G+ TV V +A+P+ EPD E+M+
Sbjct: 272 EDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNI--TVTVDWADPIEEPDDEVMSK 329
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E I+ + + YG V R+ K KDY F+ F E A+ +
Sbjct: 330 VKVLYVRNLAVEAAEEIIQAKFEPYGTVERV--------KKIKDYAFVHFENREDAIKAM 381
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE ++ L
Sbjct: 382 EDLNGKELEGSAMEISL 398
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 259 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKH-APGLYEVIIYSSPDD 317
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+ VK
Sbjct: 318 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVK 374
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 375 VLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRG 426
Query: 390 INNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 427 LNGKEIGASNIEVSL 441
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 267 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKH-APGLYEVIIYSSPDD 325
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+ VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVK 382
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 383 VLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRG 434
Query: 390 INNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 435 LNGKEIGASNIEVSL 449
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 141/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSAID 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K F DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGK-FIDGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 17/246 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNK 393
A+N K
Sbjct: 284 KALNGK 289
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 26/282 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 86 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAKRAVRE 144
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 145 LNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAAD 203
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 204 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 260
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E IR + G V R+ K +DY F+ F++ + AV +
Sbjct: 261 ILYVRNLMMETSEEAIRQIFSQFNPGCVERV--------KKIRDYAFVHFTSRDDAVLAM 312
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ-----AVKGGMSG 424
+ +N E +V L+ P+ K Q A KGG S
Sbjct: 313 DNLNGTEVEGSCIEVT----LAKPVDKEQYSRQKASKGGASA 350
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + + N+GYAF+ F N+E A++A+ E
Sbjct: 161 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 220
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L+++G G+ + + S
Sbjct: 221 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSP 277
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 278 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 334
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG + R+ K KDY FI F + AV +
Sbjct: 335 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAM 386
Query: 388 NAINNKEFSDGNSKVKL 404
N +N KE + +V L
Sbjct: 387 NELNGKEMGGSHIEVSL 403
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 29/302 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 225 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 283
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+ VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVK 340
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 341 VLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRG 392
Query: 390 INNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRT 435
+N KE N +V LRAR M QA + G+ G H S +
Sbjct: 393 LNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSIMS 451
Query: 436 FS 437
+
Sbjct: 452 LT 453
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + + N+GYAF+ F N+E A++A+ E
Sbjct: 155 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 214
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L ++G G+ + + S
Sbjct: 215 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLTEVIIYSSP 271
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 272 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 328
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG + R+ K KDY FI F + AV +
Sbjct: 329 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVRAM 380
Query: 388 NAINNKEFSDGNSKVKL 404
N +N KE + +V L
Sbjct: 381 NELNGKEMGGSHIEVSL 397
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VF +IG++ E+RL +FS + N+GYAFV + +E K+A+ +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGS-NRGYAFVMYTTREDGKKAVKQ 117
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I +E I ++ E V ++ + I
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP ++ D ++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVK 233
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + H E I + + G V R+ K +D+ FI F T E A+ +
Sbjct: 234 ILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAM 285
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
NA+++ DG K+ L+ P+ K V+
Sbjct: 286 NAMDDP-LLDG---AKIEVVLAKPVDKGNYVR 313
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEARAAMKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAAD 175
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E A+ +
Sbjct: 233 ILYVRNLMLQTTEETIEKEFNSLKPGAVERV--------KKIRDYAFVHFTQREDAINAM 284
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 285 KALNGK-VVDGSP---IEVTLAKPVDKDSYVR 312
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 23/280 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 77 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAKRAVRE 135
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 136 LNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 194
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 195 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 251
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F + E AV +N+
Sbjct: 252 ILYVRNLMIETTEEAIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNS 305
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMS 423
+N E +G+ L L+ P+ K Q A KGG +
Sbjct: 306 LNGTEL-EGSC---LEVTLAKPVDKEQYTRYQKAAKGGAA 341
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 195 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 253
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 254 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 310
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 311 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 362
Query: 390 INNK 393
+N K
Sbjct: 363 MNGK 366
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + N+GYAF+ F N+E A++A+ E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L+++G G+ + + S
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSP 280
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 281 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 337
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG++ R+ K KDY F+ F + AV +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAM 389
Query: 388 NAINNKEFSDGNSKVKL 404
N +N KE + +V L
Sbjct: 390 NELNGKEIGGSHIEVSL 406
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + N+GYAF+ F N+E A++A+ E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L+++G G+ + + S
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSP 280
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 281 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 337
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG++ R+ K KDY F+ F + AV +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAM 389
Query: 388 NAINNKEFSDGNSKVKL 404
N +N KE + +V L
Sbjct: 390 NELNGKEIGGSHIEVSL 406
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 17/256 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTNRNKGYAFVKFANKEHAKRA 208
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKEAAQEA 222
Query: 209 LTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 AKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQ 281
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 326
+ +RGF F + H A A +RL V V+G+ V +A+P+ +PDPE+MA
Sbjct: 282 PDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMA 338
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +F+ + E + +G + R+ K KDY FI F + AV
Sbjct: 339 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKA 390
Query: 387 INAINNKEFSDGNSKV 402
+ +N K+ N ++
Sbjct: 391 MEEMNGKDLEGENIEI 406
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F ++ + + A +A
Sbjct: 248 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFQEYEDHKAAAQARR 307
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 308 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 365
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 366 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 411
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 27/280 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 73 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 131
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 132 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 190
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 191 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 247
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 248 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAM 299
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
N++N E +G+ L L+ P+ K Q A KGG
Sbjct: 300 NSLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VF +IG++ E+RL +FS + N+GYAFV + +E K+A+ +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGS-NRGYAFVMYTTREDGKKAVKQ 117
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I +E I ++ E V ++ + I
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP ++ D ++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVK 233
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + H E I + + G V R+ K +D+ FI F T E A+ +
Sbjct: 234 ILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAM 285
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
NA+++ DG K+ L+ P+ K V+
Sbjct: 286 NAMDDP-LLDG---AKIEVVLAKPVDKGNYVR 313
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + N+GYAF+ F N+E A++A+ E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVKE 223
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L+++G G+ + + S
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLTEVIIYSSP 280
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 281 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 337
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG++ R+ K KDY F+ F + AV +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKEVFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAM 389
Query: 388 NAINNKEFSDGNSKVKL 404
N +N KE + +V L
Sbjct: 390 NELNGKEIGGSHIEVSL 406
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 151/301 (50%), Gaps = 26/301 (8%)
Query: 110 EHDEEEFADDDMEEPADEAETLEDERR--------ELNAIAKDRKIKKEH--EIFIGGLD 159
E +E A DD+ E E T EDER+ + ++D H E+FI +
Sbjct: 53 EPKPQEQAPDDVRE--QELATAEDERQRNQEHEEQQGAGDSEDPMSLPPHGTEVFISKVP 110
Query: 160 RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-- 217
R+AT VR E GEV +R+ K+ +N NKGY F F +E A++A+T ++ +
Sbjct: 111 REATDAQVRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARESAEKAMTILEGREVKE 170
Query: 218 -CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 276
G+R PS + L++G + T+E ++ LK V G+E I L+ D + +RG
Sbjct: 171 FPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAE-VVGLEKIELMMD-KETNQARG 228
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLD 334
F F+ F A A ++L +P+ + GH V+V +A+P R+ EI VK++++
Sbjct: 229 FGFIAFYNSAAATLALRKLSRPEFRLRGH---QVQVMWADPKRD---EIGTEKVKSIYVG 282
Query: 335 GVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNK 393
+P + EN +R YG V R+ L K ++Y FI+++ +A+ ++ NK
Sbjct: 283 NLPEQYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEAENK 342
Query: 394 E 394
+
Sbjct: 343 K 343
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 121/302 (40%), Gaps = 55/302 (18%)
Query: 48 KEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSK---------------LLGENFQSE 92
++E + E EE + D E+P ++P E SK + GE F
Sbjct: 73 EDERQRNQEHEEQQGAGDSEDPMSLPPHGTEVFISKVPREATDAQVRAFCEMAGEVFALR 132
Query: 93 L-DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDER-------RELNAIAKD 144
+ D S + G C F E A++A T+ + R R +N +
Sbjct: 133 IPKDRESNTNKGYC----------FCVFKARESAEKAMTILEGREVKEFPGRRVNVVPSI 182
Query: 145 RKIKKEHEIFIGGLDRDATQEDVRKVF--ERIG-EVIEVRLHKNFSTNRNKGYAFVKFAN 201
K ++++IG + RD T+E++ + E +G E IE+ + K TN+ +G+ F+ F N
Sbjct: 183 VK----NKLYIGQMPRDITREELEVLLKAEVVGLEKIELMMDKE--TNQARGFGFIAFYN 236
Query: 202 KEHAKRALTEMKNP-----------VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQK 250
A AL ++ P + + +E +++VGN+ +T+ ++
Sbjct: 237 SAAATLALRKLSRPEFRLRGHQVQVMWADPKRDEIGTEKVKSIYVGNLPEQYTENDLRAI 296
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
YG VE + L+ R + F+ ++ A+ A + + E V
Sbjct: 297 FSQYGT--VERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEAENKKHIMTDKELIVH 354
Query: 311 VA 312
+A
Sbjct: 355 MA 356
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 173/395 (43%), Gaps = 61/395 (15%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I + N + DY F+ FS E AV + A
Sbjct: 232 ILYVRNLMLSTSEEIIEREF-------------NNIKPEIWDYAFVHFSKREDAVEAMKA 278
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHH 449
+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 279 LNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG----- 310
Query: 450 FNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNA 505
R +G Y G + ++ +G + Y F +G S R A
Sbjct: 311 -GRGTMLQGEYTYSLGHVYDPTTTYLGAPVFYAPQAYAAIPNLHFPATKGHLSNRAIIRA 369
Query: 506 PS------RAAAGAGPSRSNPTR--LWPDGPDRGY 532
PS GA R R L GP RGY
Sbjct: 370 PSVREIYMNVPVGAAGVRGLGGRGYLAYTGPGRGY 404
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ PM K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPMDKEQ 323
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 145/278 (52%), Gaps = 23/278 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVQAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 20/272 (7%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
KK EIFIG + RD ++++ + E+ G V E+RL + S + N+GYAFV + + AK+
Sbjct: 29 KKGCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKK 88
Query: 208 ALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS 266
++ + I G+ G S DN LFVG I TKE I+++++ +GV +I +
Sbjct: 89 SVKLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKV-TDGVADIIMYP 147
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIM 325
+ +RGFAFV ++ H A A ++L V ++ H V V +AEP E D E M
Sbjct: 148 AASDKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNH---VVAVDWAEPELEVDEETM 204
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
A VK +++ + E Q+ + V R+ K +DY F+ F++ A+
Sbjct: 205 ATVKILYVRNLMLTTTEAQLNKAFSHHAPVERV--------KKIRDYAFVHFNSRSGALT 256
Query: 386 CINAINNKEFSDGNSKVKL------RARLSNP 411
+ A+N D +V L A++ NP
Sbjct: 257 AMKAMNGSVLDDAVIEVTLAKPVDKEAQMRNP 288
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 84 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAKRAVRE 142
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 143 LNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAAD 201
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 202 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 258
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E IR + G V R+ K +DY F+ F++ + AV +
Sbjct: 259 ILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLAM 310
Query: 388 NAINNKEFSDGNSKVKL 404
N +N E +V L
Sbjct: 311 NHLNGTEVEGSCIEVTL 327
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 91 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAKRAVRE 149
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 150 LNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAAD 208
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 209 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 265
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E IR + G V R+ K +DY F+ F++ + AV +
Sbjct: 266 ILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLAM 317
Query: 388 NAINNKEFSDGNSKVKL 404
N +N E +V L
Sbjct: 318 NQLNGTEVEGSCIEVTL 334
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 142/267 (53%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRE 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 249 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNS 302
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 303 LNGTEL-EGSC---LEVTLAKPVDKEQ 325
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 68 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 126
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 127 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 185
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 186 KTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 242
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+F+ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 243 VLFVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 294
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
+ ++ K + +V L ++ Q + G MS
Sbjct: 295 SVMSGKCIDGASIEVTLAKPVNKESTWRQHLNGQMS 330
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 150/308 (48%), Gaps = 40/308 (12%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEAKTAMKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I ++ I ++K +GV ++ +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKV-TDGVVDVIVYPSAAD 175
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++G+P + V +AEP E D + MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYP---IAVDWAEPEVEVDDDTMATVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F E A+ +
Sbjct: 233 ILYVRNLMLQTTEETIEREFNSLKPGAVERV--------KKIRDYAFVHFCQREDAINAM 284
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
NA+N K +G+ + L+ P+ K ++ RY RG+G G
Sbjct: 285 NALNGK-LVEGSP---IEVTLAKPVDKD-------------------SYVRYTRGTGGRG 321
Query: 448 HHFNRANF 455
+ ++
Sbjct: 322 SSLLQTDY 329
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 20/264 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ VFE+IG + EVRL +FS N N+GYAFV + +K A++ + +
Sbjct: 48 EVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDFSGN-NRGYAFVVYQSKSAARQCIKQ 106
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I T +E I+ ++ E V ++ +
Sbjct: 107 LNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKI-TEHVVDVIVYPSASD 165
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHV 328
+ +RGFAFV ++ H A A ++L + V +GH + V +AEP E D EIM V
Sbjct: 166 KTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGH---KIAVDWAEPEIEVDEEIMDQV 222
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K V++ + E +R+ + V R+ K +DY FI F++ E A I
Sbjct: 223 KIVYVRNLLLSTTEESLREIFQSIARVERV--------KKIRDYAFIHFTSKEDAHMAIT 274
Query: 389 AINNKEFSDGNSKVKLRARLSNPM 412
+ N + DG++ + L+ P+
Sbjct: 275 -LKNGQIIDGST---VEVTLAKPV 294
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 37/337 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 315
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 316 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 372
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 483
Query: 434 RTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSS 470
+ + G+ R R G + NHS+
Sbjct: 484 MSLTPMRPGA----RMPLRTPIPREYGSWSWAWNHST 516
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 135/255 (52%), Gaps = 14/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + N+GYAF+ F N+E A++A+ E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 224 LNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKH-APGLTEVIIYSSPDD 282
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+ V+
Sbjct: 283 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVR 339
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E ++++ + YG++ R+ K KDY F+ F + AV +N
Sbjct: 340 VLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 390 INNKEFSDGNSKVKL 404
+N KE + +V L
Sbjct: 392 LNGKEIGGSHIEVSL 406
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 141/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTAEDTIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 23/280 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 77 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAKRAVRE 135
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 136 LNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 194
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 195 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 251
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F + E AV +N+
Sbjct: 252 ILYVRNLMIETTEEAIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNS 305
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMS 423
+N E +G+ L L+ P+ K Q A KGG +
Sbjct: 306 LNGTEL-EGSC---LEVTLAKPVDKEQYTRYQKAAKGGAA 341
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 315
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 316 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 372
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 425 RGLNGKEIGASNIEVSL 441
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 142/267 (53%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNS 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 27/280 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 73 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 131
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 132 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 190
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 191 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 247
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 248 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAM 299
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
N++N E +G+ L L+ P+ K Q A KGG
Sbjct: 300 NSLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
N +N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 323
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 324 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 380
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 433 RGLNGKEIGASNIEVSL 449
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VF +IG++ E+RL +FS + N+GYAFV + +E K+A+ +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGS-NRGYAFVMYTTREDGKKAVKQ 117
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I +E I ++ E V ++ + I
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP ++ D ++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGH---QIMVDWAEPEQDVDEDVMRGVK 233
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + H E I + + G V R+ K +D+ FI F T E A+ +
Sbjct: 234 ILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDALNAM 285
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
NA+++ DG K+ L+ P+ K V+
Sbjct: 286 NAMDDP-LLDG---AKIEVVLAKPVDKGNYVR 313
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 23/294 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
+N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKESTWRQHLNG 321
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 84 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAKRAVRE 142
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 143 LNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAAD 201
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 202 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 258
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E IR + G V R+ K +DY F+ F++ + AV +
Sbjct: 259 ILYVRNLMMETNEETIRQIFSQWNPGCVERV--------KKIRDYAFVHFTSRDDAVLAM 310
Query: 388 NAINNKEFSDGNSKVKL 404
+ +N E +V L
Sbjct: 311 DNLNGTEIEGSCIEVTL 327
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 131/257 (50%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE G + E+RL +F +N+GYAFV F K AK A+ +
Sbjct: 113 EVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMFTAKSDAKGAVKK 171
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T K+ I ++ EGV ++ +
Sbjct: 172 LNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKV-TEGVTDVIVYPSASD 230
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GHP + V +AEP ++ D EIM VK
Sbjct: 231 KTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHP---IAVDWAEPEQDVDDEIMGQVK 287
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ +++ + G V R+ K +DY F+ FST EA + +
Sbjct: 288 VLYVRNLMLDTTEDTLQNVFSQFKPGSVERV--------KKIRDYAFVHFSTREACIEAM 339
Query: 388 NAINNKEFSDGNSKVKL 404
IN +V L
Sbjct: 340 EKINGTHIDQAEVEVTL 356
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAAINAVRQ 227
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 228 LNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 286
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+ VK
Sbjct: 287 KKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVK 343
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 344 VLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRG 395
Query: 390 INNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 396 LNGKEVGASNIEVSL 410
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 23/294 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
+N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 145/278 (52%), Gaps = 23/278 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVQAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKESTWRQHLNG 321
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GYAF+ F N++ A++A+ E
Sbjct: 165 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQQAVRE 224
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L ++G G+ + + S
Sbjct: 225 LDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLTEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGC---DIIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
V+ +++ + E ++++ + YG + R+ K KDY FI F E AV +
Sbjct: 339 VRVLYVRNLTQDCSEEKLKECFEQYGKIERV--------KKIKDYAFIHFEERECAVKAM 390
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE + +V L
Sbjct: 391 RELNGKEMGGSHIEVSL 407
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMYTQKYEAKRAVKE 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 133 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 249 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVQAM 300
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +NN E +G+ L L+ P+ K Q
Sbjct: 301 NNLNNTEL-EGSC---LEVTLAKPVDKEQ 325
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 391 RGLNGKEIGASNIEVSL 407
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNS 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 323
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 324 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 380
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 433 RGLNGKEIGASNIEVSL 449
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F + AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNRDDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
+ +N K + +V L ++ Q + G MS
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKESTWRQHLNGQMS 324
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
N +N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 238 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 296
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 297 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 355
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 356 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 412
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 413 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 464
Query: 388 NAINNKEFSDGNSKVKL 404
+ +N K + +V L
Sbjct: 465 SVMNGKCIDGASIEVTL 481
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 37/337 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 449
Query: 434 RTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSS 470
+ + G+ R R G + NHS+
Sbjct: 450 MSLTPMRPGA----RMPLRTPIPREYGSWSWAWNHST 482
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 37/337 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 323
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 324 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 380
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 491
Query: 434 RTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNHSS 470
+ + G+ R R G + NHS+
Sbjct: 492 MSLTPMRPGA----RMPLRTPIPREYGSWSWAWNHST 524
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 391 RGLNGKEIGASNIEVSL 407
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 203 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 262
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 263 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 319
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 320 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 376
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 377 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 428
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 429 RGLNGKEIGASNIEVSL 445
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 133/243 (54%), Gaps = 11/243 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E++ GG+ D + ED++K+ E +GEV+EVR+ K +R GYAFV F K+ A A+ E
Sbjct: 120 EVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKDDSR--GYAFVTFRTKDLALEAVRE 177
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GKR + S+ + LF+GN+ ++WT++ ++ +++ G GV +L+ +
Sbjct: 178 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG-PGVLKADLM-KVSST 235
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + H A A +++ P F V++A+P + D + VK+V
Sbjct: 236 NRNRGYGFVEYYNHACAEYARQKMSTP--TFKLDTNAPTVSWADP-KNNDSASTSQVKSV 292
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q+++ + +G++ ++VL + + YGF+ F A + A+
Sbjct: 293 YVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQ 348
Query: 392 NKE 394
N E
Sbjct: 349 NTE 351
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 106 VDYGEHDEEEFADDDMEEPA----DEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRD 161
V+Y H E+A M P A T+ + N A ++K +++ L ++
Sbjct: 244 VEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNNDSASTSQVK---SVYVKNLPKN 300
Query: 162 ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
TQ ++ +FER GE+ +V L + + N+ Y FV F ++ A RAL
Sbjct: 301 VTQAQLKNLFERHGEITKVVLPPSRGGHDNR-YGFVHFKDRSMAMRAL 347
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 323
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 324 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 380
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 433 RGLNGKEIGASNIEVSL 449
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SIMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 129
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 130 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 188
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 189 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 245
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 246 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 297
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 298 NNLNGTEL-EGSC---LEVTLAKPVDKEQ 322
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 19/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FER G++ E RL FS N+GYAFV + NKE A A+
Sbjct: 62 EVFVGKIPRDMYEDELVPLFERAGKIYEFRLMMEFS-GENRGYAFVMYTNKEEALLAIRM 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G+I KE I +++K EGV ++ +
Sbjct: 121 LNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKV-TEGVMDVIVCPSATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAFV + H A A ++L F RT+KV +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPG--TFQLWGRTIKVDWADPEKEVDEETMQKVKV 237
Query: 331 VFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+++ + E I+ + Y G V R+ K +DY F+ F + A+A ++
Sbjct: 238 LYVRNLMMSTTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRDYAIAAMS 289
Query: 389 AINNKEFSDGNSKVKLRARLSNPMPKTQA 417
+N + DG ++ L+ P+ K A
Sbjct: 290 EMNGR-LIDG---ARIEVTLAKPVNKEAA 314
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 315
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 316 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 372
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 483
Query: 434 RTFS 437
+ +
Sbjct: 484 MSLT 487
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 14/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G + ++RL + T +N+GYAFV F +KE A+ A+ E
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQNAVRE 237
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N + GK S N LFVGNI + KE I ++ G+ + + S
Sbjct: 238 LDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAA-GLTKVIIYSSPDD 296
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G + V +A+P EPD E M+ VK
Sbjct: 297 KKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGC---DIIVDWADPQEEPDAETMSKVK 353
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E ++++ + YG + R+ K KDY FI F + A+ +N
Sbjct: 354 VLYVRNLTQDCSEEKLKESFEVYGKIDRV--------KKIKDYAFIHFEDRDNAIKALNE 405
Query: 390 INNKEFSDGNSKVKL 404
+N K+ + +V L
Sbjct: 406 LNGKDLAGACIEVSL 420
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 92
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 208
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 209 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 262
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 263 LNGTEL-EGSC---LEVTLAKPVDKEQ 285
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 92
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 208
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 209 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 262
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 263 LNGTEL-EGSC---LEVTLAKPVDKEQ 285
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 29/272 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD +FE IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRD--------LFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 107
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 223
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 224 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 275
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 276 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 303
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 147/309 (47%), Gaps = 33/309 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F ++ A++A+ +
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQQAVQK 237
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L+++G G+ + + S
Sbjct: 238 LDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLVEVIIYSSP 294
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 295 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 351
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++++ + YG V R+ K KDY FI F E AV +
Sbjct: 352 VKVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKAM 403
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
++ KE N +V LRAR M Q V+GGM G G
Sbjct: 404 EELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQ-VRGGMMPGAMPLRGPP 462
Query: 434 RTFSRYGRG 442
+R G G
Sbjct: 463 GQGARSGAG 471
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 92
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 208
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 209 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 262
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 263 LNGTEL-EGSC---LEVTLAKPVDKEQ 285
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 29/272 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD +FE IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRD--------LFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 107
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 223
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 224 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 275
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 276 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 303
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 338
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 449
Query: 434 RTFS 437
+ +
Sbjct: 450 MSLT 453
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ + AV +N+
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNS 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 29/272 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD +FE IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRD--------LFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 107
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 223
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 224 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 275
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 276 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 303
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 43 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 101
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 102 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 160
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 161 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 217
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 218 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 269
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 270 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 302
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 92
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 208
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 209 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 262
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 263 LNGTEL-EGSC---LEVTLAKPVDKEQ 285
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 227
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 285 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++ + YG V R+ K KDY FI F ++AV +
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEHFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 394 RGLNGKEIGASNIEVSL 410
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 133/243 (54%), Gaps = 11/243 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + +D++K+ E +GEV+EVR+ K +R GYAFV F K+ A A+ E
Sbjct: 92 EVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKDDSR--GYAFVTFRTKDLALEAVRE 149
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GKR + S+ + LF+GN+ ++WT++ ++ +++ G GV +L+ +
Sbjct: 150 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG-PGVLKADLM-KVSST 207
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + H A A +++ P F V++A+P + D + VK+V
Sbjct: 208 NRNRGYGFVEYYNHACAEYARQKMSTP--TFKLDTNAPTVSWADP-KNNDSASTSQVKSV 264
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + +++ + +GD+ ++VL + + YGF+ F A + A+
Sbjct: 265 YVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQ 320
Query: 392 NKE 394
N E
Sbjct: 321 NTE 323
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 106 VDYGEHDEEEFADDDMEEPA----DEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRD 161
V+Y H E+A M P A T+ + N A ++K +++ L ++
Sbjct: 216 VEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNNDSASTSQVK---SVYVKNLPKN 272
Query: 162 ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
TQ +++K+FE G++ +V L + + N+ Y FV F ++ A RAL
Sbjct: 273 VTQAELKKLFEHHGDITKVVLPPSRGGHDNR-YGFVHFKDRSMAMRAL 319
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 170 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 229
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 230 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 286
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 287 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 343
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 454
Query: 434 RTFS 437
+ +
Sbjct: 455 MSLT 458
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N++ A A+ +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAVNAVRQ 227
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 285 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGLVGNLSPTHPSM 452
Query: 434 RTFS 437
+ +
Sbjct: 453 MSLT 456
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F+T E A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGVEL-EGSC---LEVTLAKPVDKEQ 323
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 126 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 185
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 186 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 242
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 243 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 299
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 300 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 351
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 352 RGLNGKEIGASNIEVSL 368
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F+T E A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGVEL-EGSC---LEVTLAKPVDKEQ 323
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 227
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 285 DDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 342 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 394 RGLNGKEVGASNIEVSL 410
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 323
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 324 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 380
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSI 491
Query: 434 RTFS 437
+ +
Sbjct: 492 MSLT 495
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 76 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 134
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 135 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 193
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 250
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 251 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 302
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 303 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 335
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 108 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAVRE 166
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 167 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 225
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 226 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 282
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F + E AV +N
Sbjct: 283 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNN 336
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 337 LNGTEL-EGSC---LEVTLAKPVDKEQ 359
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F+T E A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGVEL-EGSC---LEVTLAKPVDKEQ 323
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N++N E +G+ L L+ P+ K Q
Sbjct: 299 NSLNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 83 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 141
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N + G+ G S DN LF+G I T +E I +++ EGV ++ + +
Sbjct: 142 LNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAAD 200
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 201 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 257
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K +DY F+ F++ + AV +
Sbjct: 258 ILYVRNLMIETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVAM 309
Query: 388 NAINNKEFSDGNSKVKL 404
+ +N E +V L
Sbjct: 310 DNLNGTEIEGSRIEVTL 326
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F + E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N++ A A+ +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAINAVRQ 227
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 285 DDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 394 RGLNGKEIGASNIEVSL 410
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 224 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 283
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 284 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 340
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 341 DDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 397
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 398 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 449
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 450 RGLNGKEVGASNIEVSL 466
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 17/276 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTMKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCHVD-AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H + AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+F+ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLFVRNLMISTTEETIKGEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
+ ++ K + +V L ++ Q + G +S
Sbjct: 289 SVMSGKCIDGASIEVTLAKPVNKESTGRQHLNGQIS 324
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 170 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 229
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 230 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 286
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 287 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 343
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 396 RGLNGKEIGASNIEVSL 412
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 29/272 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD +FE IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRD--------LFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 107
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 223
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 224 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 275
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 276 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 303
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 129
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 130 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 188
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 189 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 245
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 246 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 297
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 298 NNLNGTEL-EGSC---LEVTLAKPVDKEQ 322
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 63 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 121
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 122 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 180
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 181 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 237
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 238 ILYVRNLMIETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAM 289
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 290 NNLNGTEL-EGSC---LEVTLAKPVDKEQ 314
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 27/283 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSG 424
N +N E +G+ L L+ P+ K Q A +GG +
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAARGGSAA 337
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYAGAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 288 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 346
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 347 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 405
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 462
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 463 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 514
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 515 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 547
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 109 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 167
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 168 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 226
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 227 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 283
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F + E AV +N
Sbjct: 284 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNN 337
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 338 LNGTEL-EGSC---LEVTLAKPVDKEQ 360
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 33/304 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N++ A A+ +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAVNAVRQ 227
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 285 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 341
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 388 NAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSS 433
+N KE N +V LRAR M QA + G+ G H S
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGLVGNLSPTHPSM 452
Query: 434 RTFS 437
+ +
Sbjct: 453 MSLT 456
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F + E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 23/281 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ + AV +N+
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNS 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSG 424
+N E +G+ L L+ P+ K Q A KG ++
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYTRYQKAAKGNVTA 337
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F+T E A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGVEL-EGSC---LEVTLAKPVDKEQ 323
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F+T E A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 299 NNLNGVEL-EGSC---LEVTLAKPVDKEQ 323
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 215 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKADAKRAVRE 273
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 274 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 332
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 333 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 389
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 390 ILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAM 441
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
N +N E +G+ L L+ P+ K Q
Sbjct: 442 NHLNGTEL-EGSC---LEVTLAKPVDKEQ 466
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 134/255 (52%), Gaps = 17/255 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G L RD ++++ VFE IG++ EVRL +FS + N+GYAFV + NKE AKRA+ +
Sbjct: 58 EVFVGKLPRDLYEDELVPVFETIGKIYEVRLMMDFSGS-NRGYAFVMYTNKEDAKRAVKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G PS DN LFVG I K I +++ EGV N+ +
Sbjct: 117 LNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVNVIVYPSATD 175
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP E D E+M VK
Sbjct: 176 KTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEPEVDEEVMRKVK 232
Query: 330 TVFLDGVPPHWKENQIRD--QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ ++ V R+ K +DY F+ + T E A+A +
Sbjct: 233 VLYVRNLMVTTTEDDIKQAFEVGEEETVTRV--------KKIRDYAFVHYKTREDAIAAM 284
Query: 388 NAINNKEFSDGNSKV 402
A+N +V
Sbjct: 285 TAMNGSTLEGAKLEV 299
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F N+E A A+ +
Sbjct: 235 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 294
Query: 212 MKNPVICGKRC-GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N I +C S N LFVGNI + K+ I L+++G G+ + + S
Sbjct: 295 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSP 351
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 352 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 408
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E+++++Q + YG V R+ K KDY FI F ++AV +
Sbjct: 409 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 460
Query: 388 NAINNKEFSDGNSKVKL 404
+N KE N +V L
Sbjct: 461 RGLNGKEIGASNIEVSL 477
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 138/272 (50%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+ G++ E+R+ +F+ N N+GYAFV F N++ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMDFNGN-NRGYAFVTFTNRQDARDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F AV +
Sbjct: 232 ILYVRNLMLTTAEETIEKEFSSVKPGSVERV--------KKIRDYAFVHFRNRADAVDAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
N +N K DG+ + L+ P+ K V+
Sbjct: 284 NVLNGK-IIDGSP---IEVTLAKPVDKESYVR 311
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 131/249 (52%), Gaps = 15/249 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG L RD ++++ + E +G + E+RL +F+ + N+GYAF + N+E A+RA+ E
Sbjct: 66 EVFIGKLPRDFFEDELVPLLETVGPIYELRLMMDFAGS-NRGYAFATYTNREDARRAVRE 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GKR G S DN LFVG I T T+E + ++ EGV N+ L + +
Sbjct: 125 LDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRV-TEGVVNVILYTSVMD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQ--KPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+ +RGFAFV ++ H A A +++ K + GH V V +AEP + D + M+ V
Sbjct: 184 KTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGH---DVAVDWAEPEPQVDEDTMSKV 240
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+++ + E+++R+ G + + K +D+ FI + + E A +
Sbjct: 241 MVLYVRNLVLSTTEDELREVFSLNGSL------KVSKVKKIRDFAFIHYRSREEATTALE 294
Query: 389 AI-NNKEFS 396
A+ N F+
Sbjct: 295 AMQTNNAFT 303
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 22/273 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFV-GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+ N I G+ G S DN LFV G+ T +E I ++K +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKV-TDGVVDVIVYPSAA 174
Query: 270 HEGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ V
Sbjct: 175 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSV 231
Query: 329 KTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
K +++ + E I + G V R+ K +DY F+ F+ E AV
Sbjct: 232 KILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVDA 283
Query: 387 INAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+ A+N K DG+ + L+ P+ K V+
Sbjct: 284 MKALNGKVL-DGSP---IEVTLAKPVDKDSYVR 312
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 11/300 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + +D++K+ E +GEV+EVR+ + YAFV F KE A +A+ +
Sbjct: 97 EVYVGGIASDVSSDDLKKLCESVGEVVEVRM----PGKSGRLYAFVNFRTKELASKAIQK 152
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GK+ + S+ + LF+GNI WT+ K+ ++ G GV +NLV H
Sbjct: 153 LNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAEEVG-PGVLKVNLVK-APHS 210
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
++G+ F+ + A A K + P+ F + V++A+ + A VK++
Sbjct: 211 DTNKGYGFIEYYNQACAEYAKKMMSTPE--FKLDKNAPNVSWADTKNGGESASTAQVKSL 268
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + Q++ + G+V ++V+ + + + YGF+ F A+ +
Sbjct: 269 YVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENR-YGFVHFKERSMAMKALEDTE 327
Query: 392 NKEFSDGNSKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGSGRAGHH 449
E L L++ T A KGG + +G+G ++ G G AG +
Sbjct: 328 RFELDGQLLDCSLAKPLADKKDDTSAPKGGPLLPSYTPVGYGLMGAYNPLGNGLAVAGAY 387
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 32/310 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + T N+GYAFV F ++ A++A+ +
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQQAVQK 237
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ---KLKDYGVEGVENINLVSD 267
+ N + GK S N LFVGNI + KE I + KL Y G+ + + S
Sbjct: 238 LDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTGY-TAGLVEVIIYSS 296
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 326
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 297 PDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMS 353
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E ++++ + YG V R+ K KDY FI F E AV
Sbjct: 354 KVKVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKA 405
Query: 387 INAINNKEFSDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGS 432
+ ++ KE N +V LRAR M Q V+GGM G G
Sbjct: 406 MEELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQ-VRGGMMPGAMPLRGP 464
Query: 433 SRTFSRYGRG 442
+R G G
Sbjct: 465 PGQGARSGAG 474
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 27/280 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE G + E+RL +F +N+GYAFV F K AK+A+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAKQAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ FS+ E AV +
Sbjct: 247 ILYVRNLMIETSEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFSSREDAVQSM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +V L+ P+ K Q A KGG
Sbjct: 299 RKLNGTELEGSCIEVT----LAKPVDKEQYTRYQKAAKGG 334
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 143/278 (51%), Gaps = 27/278 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAF+ + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFIMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I + EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKLKKREEIAKV-----TEGVLDVIMYASAAD 185
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 186 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 242
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV ++
Sbjct: 243 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMSN 296
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N E +G+ L L+ P+ K Q A KGG
Sbjct: 297 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 330
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 27/280 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E+ I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMMETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGG 421
+N + +G+ L L+ P+ K Q A KGG
Sbjct: 299 KKLNGTDL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE+ G + E RL FS N+GYAFV + +E A+RA+
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFS-GENRGYAFVMYTTREKAQRAIQL 117
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G+I KE I++++ EGV ++ +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 176
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAFV + H AMA K + ++GH T++V +AEP +E D E M V+
Sbjct: 177 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVR 233
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K DY FI F E A+ +
Sbjct: 234 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTAL 285
Query: 388 NAINNKEFSDGNSKVKL 404
++N K +V L
Sbjct: 286 ESMNGKVIDGSPIEVTL 302
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 130/263 (49%), Gaps = 10/263 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G L R+ T+ED+ + E+ GEV +V + + S YAFV F KE AK+A+
Sbjct: 130 EVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFTTKESAKKAIET 186
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ K+ + S+ + LF+GNI + +E + + + + G G +++ L+ D +
Sbjct: 187 LNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQG-PGYQHLELIKDPKDT 245
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAFV + A A K + F ++ + V +A R E VK+V
Sbjct: 246 TRNRGFAFVEYYNKGCAEKAMKNMTHSK--FQLDDKLITVKWATSQRSSSEE----VKSV 299
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + E Q+R+ +G+V ++VL ++D+GF+ ++ H +A+ I
Sbjct: 300 YVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKTE 359
Query: 392 NKEFSDGNSKVKLRARLSNPMPK 414
D V L LS+ P+
Sbjct: 360 KYTLEDRELSVSLARPLSDKKPQ 382
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 17/248 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HE+F G + +D ++++ +FE G + + RL T N+GYAFV F ++ A+ A+
Sbjct: 173 HEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQEAVK 232
Query: 211 EMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI---NLVS 266
++ N + +R S N LFVGNI + T+E I ++ E + ++ N+
Sbjct: 233 QLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKL-TESLTDVIVYNVAD 291
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D + + +RGFAF+ + H A A ++L + + + V +A+P EPD E M+
Sbjct: 292 DAKKK--NRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCD--IIVDWADPQEEPDEETMS 347
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E+QIR++ + +G V R+ K KDYGF+ F E A+A
Sbjct: 348 KVKVLYVRNLKQDVTEDQIREKFEVFGKVERV--------KKIKDYGFVHFEEREHALAA 399
Query: 387 INAINNKE 394
+ +N K+
Sbjct: 400 MKDLNGKQ 407
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE+ G + E RL FS N+GYAFV + +E A+RA+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFS-GENRGYAFVMYTTREKAQRAIQL 104
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G+I KE I++++ EGV ++ +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 163
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAFV + H AMA K + ++GH T++V +AEP +E D E M V+
Sbjct: 164 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVR 220
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K DY FI F E A+ +
Sbjct: 221 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTAL 272
Query: 388 NAINNKEFSDGNSKVKL 404
++N K +V L
Sbjct: 273 ESMNGKVIDGSPIEVTL 289
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 132/270 (48%), Gaps = 14/270 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + RD ++++ +FE+ G + ++RL + TN N+GYAFV F E A+ A+ +
Sbjct: 176 EVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEAVNQ 235
Query: 212 MKNPVICGKR-CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + + G R S N LFVGNI + I ++ G+ + + S
Sbjct: 236 LNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKV-TAGLAEVIIYSSPDD 294
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGF F+ + H A A +RL V +FG + V +A+P EPD + M+ VK
Sbjct: 295 RRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGC---DIIVDWADPQEEPDNDTMSRVK 351
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + + E ++++ + +G + R+ K KDY F+ F + AV ++A
Sbjct: 352 VLYVRNLTQEFTEEKLKEAFEAHGPIQRV--------KKIKDYAFVHFEERDDAVQAMDA 403
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
+N N +V L S+ K + +K
Sbjct: 404 LNGHTLYGANLEVSLAKPPSDRKKKEEILK 433
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEAAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K+ EGV ++ +
Sbjct: 121 LNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F + A+ +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNRDDAMTAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K + DG + L+ P+ K + ++G
Sbjct: 289 SVMNGK-YIDGAG---IEVTLAKPVNKENTWRQHLNG 321
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 147/303 (48%), Gaps = 19/303 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++FE +GEV+EVR+ N+ YAF+ F K A +A+
Sbjct: 105 EVYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRTKAMALKAIQN 161
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++
Sbjct: 162 LSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAP 217
Query: 272 GLSR--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
GL R G+ F+ + A A +++ P+ F V++A+P + A VK
Sbjct: 218 GLDRNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVK 275
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
++++ +P + Q++ + G++ ++V+ S + + YGF+ F A+ +
Sbjct: 276 SLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMAMKALKN 334
Query: 390 INNKEFSDGN----SKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGS 443
E DG S K A + T KGG + +G+G ++ G+G
Sbjct: 335 TERYEL-DGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAPLGYGLVGAYNPRGKGL 393
Query: 444 GRA 446
A
Sbjct: 394 ADA 396
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 18/264 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ + E+ GE+ E RL + +T NKG+AF F + A +A+T
Sbjct: 111 EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTKQTSAYQAITT 170
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ- 269
+ + I G+R S N LFV I +KE I Q+ + + I S Q
Sbjct: 171 LNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDLQDVIVYQSCDQG 230
Query: 270 -HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
H L+RGF F+ ++ ++ +A R V ++G V +AE PD +M+
Sbjct: 231 NHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEA--VTWAEAREIPDYAVMSK 288
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK++++ VP E Q++ YG + ++ K +DYGF+ F+ E+AV I
Sbjct: 289 VKSIYVRNVPLPMSETQLKAVFTKYGQIEKV--------RKIRDYGFVYFAKRESAVQAI 340
Query: 388 NAINNKEFSDGNSKVKLRARLSNP 411
+ IN + DG KL L+ P
Sbjct: 341 DGINGA-YIDG---CKLEVSLAIP 360
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 138/260 (53%), Gaps = 12/260 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A + + E
Sbjct: 111 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKVVKE 168
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ +
Sbjct: 169 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLMK-VSSA 226
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + H A A Y R + F V++A+P + D + VK+V
Sbjct: 227 NRNRGYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSVSTSQVKSV 283
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ + +G++ ++VL + + YGF+ F A + A+
Sbjct: 284 YVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQ 339
Query: 392 NKEFSDGNSKVKLRARLSNP 411
N E + + +V L L+ P
Sbjct: 340 NTERYELDGQV-LDCSLAKP 358
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 137/269 (50%), Gaps = 16/269 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD +E++ VFE+IG + RL F+ N+GY F + N+E K+A+
Sbjct: 103 EVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMMEFN-GTNRGYGFCVYTNREDTKKAVQA 161
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LFVG I T+E I ++K EGV+++ +
Sbjct: 162 LDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRV-TEGVKDVISYPSVTD 220
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAFV + H A A ++L + + + + V +AEP RE + +IM+ VK
Sbjct: 221 KSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWN--QQIAVDWAEPEREVNEDIMSKVKI 278
Query: 331 VFLDGVPPHWKENQIRDQ--IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+++ + E+ +R+ GD I + +S DY FI F E A C+
Sbjct: 279 LYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKIS-----DYAFIHFKEREQAARCLE 333
Query: 389 AINNKEFSDGNSKVKLRARLSNPMPKTQA 417
A+N+ DG+ K+ + P+ KT+A
Sbjct: 334 ALNDT-LIDGS---KIEVTWAKPVDKTEA 358
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 16/249 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + ++ ++ + +FE +G++ ++RL + T RN+GYAF+ + +K A A
Sbjct: 293 HEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAAK 352
Query: 211 EMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 353 KFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 411
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT-VKVAFAEPLREPDPEIMA 326
+RGF F+ F H A A +++ + P + + V +AE EPD E MA
Sbjct: 412 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKL---RPWNSDLVVDWAEQQEEPDEETMA 468
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E Q+++ YG+V R K +DY FI F E A+
Sbjct: 469 KVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKA 520
Query: 387 INAINNKEF 395
+ A+N E
Sbjct: 521 MEALNGTEL 529
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 17/262 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ +FE +G + RL +FS N+GY F + N+E +RA+ E
Sbjct: 43 EVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMDFS-GCNRGYGFCIYTNREDTRRAVAE 101
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + I GK G S DN LFVG I TK+ I ++ +GV+++ + +
Sbjct: 102 LDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKV-TDGVKDVIVYPSVAD 160
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP RE D +IM+ V+
Sbjct: 161 KTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGH---QIAVDWAEPEREVDEDIMSKVR 217
Query: 330 TVFLDGVPPHWKENQIRDQIK---GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
+++ + H E +RD G D + V K +DY F+ F A A
Sbjct: 218 ILYVRNLMLHTTEEALRDHCNRAIGAVDAVERV-------KKIRDYAFVHFRDRLQATAA 270
Query: 387 INAINNKEFSDGNSKVKLRARL 408
+ ++ K F L A L
Sbjct: 271 LRQLDGKSFLITYKTATLLALL 292
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 134/269 (49%), Gaps = 12/269 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + +D ++++ +FE+ G++ ++RL + + N+GYAF+ F N+E A ++ E
Sbjct: 161 EVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNSVRE 220
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S +N LFVGNI KE + ++ + G+ + + S
Sbjct: 221 LDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHA-PGLTEVIIYSSPDD 279
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A +RL + + + V +A+P EPD E MA VK
Sbjct: 280 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDEETMAKVKV 337
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E ++++ + +G V R+ K KDY F+ F + AV + +
Sbjct: 338 LYVRNLTTDVTEEKLKELFEAHGRVERV--------KKIKDYAFVHFEERDHAVRAMEQL 389
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
K+ +V L S+ K + ++
Sbjct: 390 QGKDLCGAPMEVSLAKPPSDKKKKEEVLR 418
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAK 206
+ K +++ L D T+E ++++FE G V V+ + K YAFV F ++HA
Sbjct: 332 MAKVKVLYVRNLTTDVTEEKLKELFEAHGRVERVK--------KIKDYAFVHFEERDHAV 383
Query: 207 RALTEMKNPVICG 219
RA+ +++ +CG
Sbjct: 384 RAMEQLQGKDLCG 396
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 15/243 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+G + RD ++++ +FE+ G + ++RL + + +N+GYA + F KE A+ A+
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 213 KNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L +
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDK 344
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+R F F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 345 KKNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKV 400
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY F+ F AAV ++ +
Sbjct: 401 LFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEM 452
Query: 391 NNK 393
N K
Sbjct: 453 NGK 455
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 16/249 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + ++ ++ + +FE +G++ ++RL + T RN+GYAF+ + +K A A
Sbjct: 280 HEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAAK 339
Query: 211 EMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 340 KFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 398
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT-VKVAFAEPLREPDPEIMA 326
+RGF F+ F H A A +++ + P + + V +AE EPD E MA
Sbjct: 399 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKL---RPWNSDLVVDWAEQQEEPDEETMA 455
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E Q+++ YG+V R K +DY FI F E A+
Sbjct: 456 KVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKA 507
Query: 387 INAINNKEF 395
+ A+N E
Sbjct: 508 MEALNGTEL 516
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 16/249 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + ++ ++ + +FE +G++ ++RL + T RN+GYAF+ + +K A A
Sbjct: 313 HEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAAK 372
Query: 211 EMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 373 KFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 431
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT-VKVAFAEPLREPDPEIMA 326
+RGF F+ F H A A +++ + P + + V +AE EPD E MA
Sbjct: 432 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKL---RPWNSDLVVDWAEQQEEPDEETMA 488
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E Q+++ YG+V R K +DY FI F E A+
Sbjct: 489 KVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKA 540
Query: 387 INAINNKEF 395
+ A+N E
Sbjct: 541 MEALNGTEL 549
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 16/247 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + ++ ++ + +FE +G++ ++RL + T RN+GYAF+ + +K A A
Sbjct: 292 HEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAAK 351
Query: 211 EMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 352 KFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 410
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT-VKVAFAEPLREPDPEIMA 326
+RGF F+ F H A A +++ + P + + V +AE EPD E MA
Sbjct: 411 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKL---RPWNSDLVVDWAEQQEEPDEETMA 467
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E Q+++ YG+V R K +DY FI F E A+
Sbjct: 468 KVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKA 519
Query: 387 INAINNK 393
+ A+N K
Sbjct: 520 MEALNEK 526
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 129/237 (54%), Gaps = 24/237 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ DAT ED++++ E +GEV+EVR+ +KGYAF+ F K+ A +A+ +
Sbjct: 183 EVYLGGISNDATSEDLKELCEPVGEVVEVRIMPG--KRESKGYAFITFKTKDLALKAIEK 240
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GK+ + S+ + LFVGN+ N+W+ + +K+ +++ G GV I+L+ D + +
Sbjct: 241 LSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG-PGVLKIDLIKDPRTD 299
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + + +A A Y R + F V++A+P + D + VK+V
Sbjct: 300 R-NRGYGFVEY--YNNACAEYSRQKMSTPNFKLDTNAPTVSWADP-KNGDSASTSQVKSV 355
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLA-----------------RNMSTAKRKD 371
++ +P + + Q++ + +G++ +IVL R+M+ K+
Sbjct: 356 YVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFKDRHMAMKALKN 412
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 153/334 (45%), Gaps = 60/334 (17%)
Query: 61 ENVDDKEEPETVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDD 120
+ VDD+ +D SKL Q D + + + + H E
Sbjct: 141 DEVDDR-----------QDSDSKLEVVPQQDAPKDGKDKDKHAELLGLPPHGSE------ 183
Query: 121 MEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV 180
+++GG+ DAT ED++++ E +GEV+EV
Sbjct: 184 --------------------------------VYLGGISNDATSEDLKELCEPVGEVVEV 211
Query: 181 RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICN 240
R+ +KGYAF+ F K+ A +A+ ++ N GK+ + S+ + LFVGN+ N
Sbjct: 212 RIMPG--KRESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPN 269
Query: 241 TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300
+W+ + +K+ +++ G GV I+L+ D + + +RG+ FV + + +A A Y R +
Sbjct: 270 SWSHDDLKKAVEEVG-PGVLKIDLIKDPRTDR-NRGYGFVEY--YNNACAEYSRQKMSTP 325
Query: 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360
F V++A+P + D + VK+V++ +P + + Q++ + +G++ +IVL
Sbjct: 326 NFKLDTNAPTVSWADP-KNGDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVL 384
Query: 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 394
+ + YGF+ F A + A+ N E
Sbjct: 385 PPSKDGHDNR-YGFVHFKDRHMA---MKALKNTE 414
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 12/254 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + +D ++++ +FE+ G + ++RL + + N+GYAF+ F N++ A ++ E
Sbjct: 168 EVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAHNSVRE 227
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S +N LFVGNI KE + ++ + G+ + + S
Sbjct: 228 LDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHA-PGLTEVIIYSSPDD 286
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A +RL + + + V +A+P EPD E MA VK
Sbjct: 287 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDQETMAKVKV 344
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E ++++ + +G V R+ K KDY F+ F + AV +N +
Sbjct: 345 LYVRNLTADVTEERLKELFEQHGRVERV--------KKIKDYAFVHFEERDHAVKAMNQL 396
Query: 391 NNKEFSDGNSKVKL 404
K+ +V L
Sbjct: 397 QGKDLCGAPMEVSL 410
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 19/249 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F +K+ A A+
Sbjct: 168 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDAAAEAVKL 227
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
N I K G S N+ LFVG+I T+E+I L D+ EG++ + L
Sbjct: 228 CDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESI---LDDFSKVTEGLQEVILYHQP 284
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA- 326
+ +RGF F+ + H A A + L V V+G+P V V +A P+ E D ++MA
Sbjct: 285 DDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNP---VTVEWANPVTERDTDVMAN 341
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
K +F+ + E + +G + R+ K KDY F+ F +AAV
Sbjct: 342 QAKVLFVRKLATSVTEELLVKTFSAFGKLERVY--------KLKDYAFVHFEDRDAAVKA 393
Query: 387 INAINNKEF 395
+ +N KE
Sbjct: 394 MVDMNGKEL 402
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 147/303 (48%), Gaps = 19/303 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++FE +GEV+EVR+ N+ YAF+ F K A +A+
Sbjct: 104 EVYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRTKAMALKAIQN 160
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++
Sbjct: 161 LSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAP 216
Query: 272 GLSR--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
GL R G+ F+ + A A +++ P+ F V++A+P + A VK
Sbjct: 217 GLDRNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVK 274
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
++++ +P + Q++ + G++ ++V+ S + + YGF+ F A+ +
Sbjct: 275 SLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMAMKALKN 333
Query: 390 INNKEFSDGN----SKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGS 443
E DG S K A + T KGG + +G+G ++ G+G
Sbjct: 334 TERYEL-DGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAPLGYGLVGAYNPRGKGL 392
Query: 444 GRA 446
A
Sbjct: 393 ADA 395
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ DAT+ D++ + IGEV EVR+ + + KGYAFV F NK+ A +A+
Sbjct: 92 EVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASKAIDT 151
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ + GKR + ++ LF+GN+ WT+ IK+ G GV+ + L + Q+
Sbjct: 152 LNSTEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIG-PGVQIVELPKEPQNM 210
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKT 330
G +RGFAF+ + H A A Y + + + F + V++AE + VK
Sbjct: 211 GRNRGFAFIEYHNH--ACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKA 268
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + +++ + +G ++++V+ + YGF+ ++ + + A+
Sbjct: 269 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER---TSVMRAL 325
Query: 391 NNKE 394
N E
Sbjct: 326 KNTE 329
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+H V+L G+P E ++ + G+V + + R + K Y F+ F + A
Sbjct: 88 SHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASK 147
Query: 386 CINAINNKEF 395
I+ +N+ EF
Sbjct: 148 AIDTLNSTEF 157
>gi|148909314|gb|ABR17756.1| unknown [Picea sitchensis]
Length = 344
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 314 AEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
A+PL +PD ++M VK+VF+DG+ P W E ++++ +G++ R+VLA N+ +AKRKD+G
Sbjct: 33 AQPLNDPDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFG 92
Query: 374 FIDFSTHEAAVACINAIN-NKEFSDGNSKVKLRARLSNPMPKTQAVKG 420
F++++T EAA+ACI A + + E DG+SKVK++ L+ P K + KG
Sbjct: 93 FVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPSHKGKLRKG 140
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 20/302 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + +D+RK+ E IGEV+EVR+ K YAFV F KE A +A+ +
Sbjct: 98 EVYVGGISSDVSSDDLRKLCESIGEVVEVRM----PGKSGKLYAFVNFRTKELAVKAIQK 153
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GK+ + S+ + LF+GNI WT++ K+ +++ G GV +NLV + +
Sbjct: 154 LNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAVEEVG-PGVVKVNLVKAPRSD 212
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
++G+ F+ + A A K++ P+ F + V++A+ + + VK++
Sbjct: 213 -TNKGYGFIEYYNQACAEYAKKKMSTPE--FKLDKNAPNVSWADTKNGGESASTSQVKSL 269
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + Q++ + G+V ++V+ + + + YGF+ F A+ +
Sbjct: 270 YIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENR-YGFVHFKERSMAMKALKDTE 328
Query: 392 NKEFSDGNSKVKLRARLSNPMPK-----TQAVKGG--MSGGFRIGHGSSRTFSRYGRGSG 444
E DG+ L L+ P+ + T KGG + +G+G ++ G G
Sbjct: 329 RYEL-DGHL---LDCSLAKPLAEKKDDTTSVPKGGPLLPSYTPLGYGLMGAYNPLGNGLA 384
Query: 445 RA 446
A
Sbjct: 385 GA 386
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 147/303 (48%), Gaps = 19/303 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++FE +GEV+EVR+ N+ YAF+ F K A +A+
Sbjct: 105 EVYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRTKAMALKAIQN 161
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GK+ +PS+ + LF+GN+ + WT + K +++ G GV + L ++
Sbjct: 162 LSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVG-PGVLKVEL---MKAP 217
Query: 272 GLSR--GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
GL R G+ F+ + A A +++ P+ F V++A+P + A VK
Sbjct: 218 GLDRNKGYGFIEYYNQACAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVK 275
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
++++ +P + Q++ + G++ ++V+ S + + YGF+ F A+ +
Sbjct: 276 SLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR-YGFVHFKERYMAMKALKN 334
Query: 390 INNKEFSDGN----SKVKLRARLSNPMPKTQAVKGG--MSGGFRIGHGSSRTFSRYGRGS 443
E DG S K A + T KGG + +G+G ++ G+G
Sbjct: 335 TERYEL-DGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAPLGYGLVGAYNPRGKGL 393
Query: 444 GRA 446
A
Sbjct: 394 ADA 396
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GYAFV F +++ A A+ E
Sbjct: 131 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 190
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ N + GK S N LFVGNI + KE I L ++G G+ + + S
Sbjct: 191 LDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEI---LDEFGKLTAGLMEVIIYSSP 247
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD + M+
Sbjct: 248 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSK 304
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++++ + +G V R+ K KDY FI F + AV +
Sbjct: 305 VKVLYVRNLTQDTSEEKLKESFEQFGKVERV--------KKIKDYAFIHFEDRDHAVNAM 356
Query: 388 NAINNKEFSDGNSKVKL 404
++ K+ N +V L
Sbjct: 357 KELDGKDLGGSNLEVSL 373
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 17/278 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIKF 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I K+ I ++K EGV ++ + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKV-TEGVVDVIVYPNATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMMSTTEETIKAEFNKFKPGVVERV--------KKLRDYAFVHFFHREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG 425
+ +N K + +V L ++ Q G +S G
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKESTWKQHFNGQISPG 326
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 127/257 (49%), Gaps = 18/257 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G L ++++ +FE+ G++ ++RL + + N+GYAFV + KE A+RA E
Sbjct: 160 EVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAERATVE 219
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDI 268
+ + GK S N LF+GNI + KE I ++++G G+ + + S
Sbjct: 220 LDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDI---MEEFGKITSGLTEVIIYSSP 276
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAH 327
+RGF F+ + H A A +RL P+ V+G + V +A+P EPD E M+
Sbjct: 277 DDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGC---DIIVDWADPQEEPDDETMSK 333
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + EN++++ + +G V R+ K KDY FI F+ A+ +
Sbjct: 334 VKVLYVRNLTQEVTENRLKETFEVHGSVERV--------KKIKDYAFIHFNDRGCALKAL 385
Query: 388 NAINNKEFSDGNSKVKL 404
+N +V L
Sbjct: 386 EELNGSNLDGATLEVSL 402
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 12/254 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GYAFV F +++ A A+ E
Sbjct: 169 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 228
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ + I GK+ G S +N LFVGNI ++ + ++ + G+ + + S
Sbjct: 229 LNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKH-APGLVEVIIYSSPDD 287
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A +RL + + + + V +A+P EPD + M+ VK
Sbjct: 288 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTMSKVKV 345
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E ++++ + +G V R+ K KDY F+ F + AV + +
Sbjct: 346 LYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMKDL 397
Query: 391 NNKEFSDGNSKVKL 404
+ KE N +V L
Sbjct: 398 DGKEVGGSNIEVSL 411
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 138/283 (48%), Gaps = 14/283 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R ++++ + E G V + RL + + +N+GY FV + NKE A +
Sbjct: 163 QVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEAATECVKM 222
Query: 212 MKNPVICGKR-CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I K+ G S+ N LFVG+I T TK+ I ++ D +G++++ + +
Sbjct: 223 LDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEF-DGITQGLKDVIIYLQTED 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ ++ H A A +RL V F + TV V +A+P+ EP EIM+ VK
Sbjct: 282 KMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNN---TVSVDWADPVEEPSDEIMSKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E + YG+V R+ K KDY F+ F + A+ +
Sbjct: 339 VLYIKNLSMKATEEIVMATFSAYGEVERV--------KKIKDYAFVHFKERDNAMKALEE 390
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGS 432
+N ++ L + + Q + M+ + +G+G+
Sbjct: 391 LNGLNLEGEAIEISLAKPVDKKKKERQMERKMMTHAYGMGYGN 433
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 144/321 (44%), Gaps = 57/321 (17%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIGGL +D ++++R + E IGE+ E+RL K+ T +KG+AFV F +KE A++A E
Sbjct: 76 EVFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEE 135
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+++ GK + SE + LF+GN+ T++ ++ +++ G G+E + L+ D Q
Sbjct: 136 LRSKDYKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIEEVG-PGMEVLELIKDPQTP 194
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RGFAF+++ + +A A Y R + + F T V++A+P
Sbjct: 195 TRNRGFAFILY--YNNACADYSRQKMLNANFKLDGHTPTVSWADP--------------- 237
Query: 332 FLDGVPPHWKE----NQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
G+PP +RD K Y G ++ +VLA+ + K D S A
Sbjct: 238 --KGMPPDHSPAAAGQAVRDTEK-YEIDGQLLEVVLAKPQADKKP------DGSYPYNAG 288
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSR---YGR 441
N + P+P G G G G + F + YGR
Sbjct: 289 VNPNPV--------------------PLPAYSGFAGNPHGSLGTGFGVAAGFQQPVIYGR 328
Query: 442 GSGRAGHHFNRANFQRGRGFY 462
G AG H GR Y
Sbjct: 329 GPMPAGMHMVPMVLPDGRIGY 349
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
H VF+ G+P E+++RD + G++ I L ++ T + K + F+ F + E A
Sbjct: 73 HGSEVFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKA 132
Query: 387 INAINNKEF 395
+ +K++
Sbjct: 133 TEELRSKDY 141
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 43/367 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ + E+ G++ EVR+ +F+ N N+GYAFV F+NK+ A+ A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEARAAMKQ 116
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K +GV ++ +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAAD 175
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---AIAVDWAEPEVEVDEDTMATVK 232
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ F+ E A+ +
Sbjct: 233 ILYVRNLMLQTTEETIEKEFNSLKPGAVERV--------KKIRDYAFVHFTQREDAINAM 284
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K V+ G R G ++ Y G
Sbjct: 285 KALNGK-VVDGSP---IEVTLAKPVDKDSYVRYTRGTGGRGGSLLQTDYTSY-----TLG 335
Query: 448 HHFNRANFQRGRGFYQHGRNHSSRMGPTEYDFDNRYTEFHGRQFI--------------- 492
++ + G + + +++ P ++ F GR I
Sbjct: 336 QMYDPSAAYLGAPVFYAPQAYTAI--PAQFRFPAAKAHVGGRGLIRTPSVRGAAGVRGLG 393
Query: 493 GRGGRSF 499
GRG ++
Sbjct: 394 GRGYLAY 400
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + + ++ + +FE++G++ ++RL + T +N+GYAF+ F K A A
Sbjct: 186 HEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAK 245
Query: 211 EMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ + ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 246 KFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 304
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
+RGF F+ F H A A +++ + + + V +AE EPD E MA
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAK 362
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E Q+++ +G+V + K KDY FI F+ E AV +
Sbjct: 363 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAM 414
Query: 388 NAIN 391
A+N
Sbjct: 415 EALN 418
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + + ++ + +FE++G++ ++RL + T +N+GYAF+ F K A A
Sbjct: 198 HEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAK 257
Query: 211 EMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ + ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 258 KFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 316
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
+RGF F+ F H A A +++ + + + V +AE EPD E MA
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAK 374
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E Q+++ +G+V + K KDY FI F+ E AV +
Sbjct: 375 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAM 426
Query: 388 NAIN 391
A+N
Sbjct: 427 EALN 430
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + + ++ + +FE++G++ ++RL + T +N+GYAF+ F K A A
Sbjct: 198 HEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAK 257
Query: 211 EMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ + ++ GK S N LF+GNI + +KE I + K++ EGV + + S D
Sbjct: 258 KFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPD 316
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
+RGF F+ F H A A +++ + + + V +AE EPD E MA
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVD--WAEQQEEPDEETMAK 374
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E Q+++ +G+V + K KDY FI F+ E AV +
Sbjct: 375 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAM 426
Query: 388 NAIN 391
A+N
Sbjct: 427 EALN 430
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 15/279 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + ++ ++++ + E+ GEV ++RL + T +N+GYAF F + E A+ A+ +
Sbjct: 172 EIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAFAAFTSIEGAREAVKQ 231
Query: 212 MKNPVICGK-RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I + S L+VG+I TK+ I ++ +G+ ++ ++ +
Sbjct: 232 LNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVE-KGLLDV-IIYKTED 289
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAF+ F H A +A ++L + + + V V +A+P+ EPD + M+ VK
Sbjct: 290 KMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWN-QINVNVDWADPVIEPDSDTMSKVKV 348
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
V++ + E +I++ YG+V + K KDY F+ F +AAV I +
Sbjct: 349 VYIRNLSTETTEVKIKEDFGQYGEVEK--------AKKMKDYCFVHFKERDAAVKAIEEM 400
Query: 391 NNKEFSDGNSKVKL-RARLSNPMPKTQAVK--GGMSGGF 426
N KE+ +V L + + N K + ++ GG S GF
Sbjct: 401 NGKEYEGTTIEVSLAKPPMENKKKKERIMRQQGGGSFGF 439
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 140/280 (50%), Gaps = 23/280 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE+IGE+ E+RL +FS + N+GY FV + ++ AKRA+ E
Sbjct: 59 EVFVGKIPRDCYEDELVPVFEKIGEIYELRLMMDFSGS-NRGYCFVMYTKRDDAKRAVRE 117
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N + G+ G S DN LFVG I + I+ ++K EGV ++ +
Sbjct: 118 LNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKV-TEGVVDVIVYPSATD 176
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP +E D ++M+ VK
Sbjct: 177 KAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGH---QIAVDWAEPEQEVDEDVMSKVK 233
Query: 330 TVFLDGV---PPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+++ + +Q G G V R+ K +DY F+ F + A+
Sbjct: 234 ILYVRNLMLTTTEEFLETTFNQACGKEGAVERV--------KKLRDYAFVHFKERDDALL 285
Query: 386 CINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG 425
+ IN + +V L+ P+ K V+ GG
Sbjct: 286 AMEVINGQLIEGSMVEVT----LAKPVDKNSYVRYTRGGG 321
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++D+ +FE++G + E RL FS N+GYAFV + ++E A+RA+
Sbjct: 78 EVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMMEFS-GENRGYAFVMYTDREAAQRAIQM 136
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V GK G S DN LF+G+I K+ + +++K +GV + +
Sbjct: 137 LDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKV-TDGVVDAIVYPSTTD 195
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH +++V +AEP ++ D E+M V+
Sbjct: 196 KNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGH---SIQVDWAEPEKDVDEEVMQRVR 252
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + + G V R+ K DY FI + + A+ +
Sbjct: 253 VLYVRNLMLETSEETLRQEFSRFKPGCVERV--------KKLSDYAFIHYRSRSDALTAL 304
Query: 388 NAINNKEFSDGNSKVKL 404
+ +N +V L
Sbjct: 305 SLMNGAHIDGAAVEVTL 321
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 17/262 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GY F+ F +K A A+ +
Sbjct: 162 EVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALEAVKQ 221
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N + GK S N LFVGNI + +K+ I ++ + + I S +
Sbjct: 222 LDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRSAEKE 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAF+ + H A A ++L V+G V V +A+P+ +PD + M+ VK
Sbjct: 282 NQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGC---DVIVDWADPIDDPDSDTMSKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ ++++ YG V R+ K KDYGFI F + AV +
Sbjct: 339 VLYVRNLTSDVTEDTLKEKFGEYGKVERV--------KKIKDYGFIHFEERDDAVKAMEG 390
Query: 390 INNKEFSDGNSKVKLRARLSNP 411
+N ++ K+++ L+ P
Sbjct: 391 MNGQKL----GKLEMEVSLAKP 408
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 131/259 (50%), Gaps = 22/259 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GYAFV F +++ A A+ E
Sbjct: 169 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 228
Query: 212 MKN----PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLV 265
+ N P C K + P N LFVGNI + KE I L ++G G+ + +
Sbjct: 229 LNNYEIKPGNCLKINVSVP---NLRLFVGNIPKSKGKEEI---LDEFGKLTAGLVEVIIY 282
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM 325
S + +RGF F+ + H A A +RL + + + + V +A+P EPD + M
Sbjct: 283 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTM 340
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+ VK +++ + E ++++ + +G V R+ K KDY F+ F + AV
Sbjct: 341 SKVKVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVK 392
Query: 386 CINAINNKEFSDGNSKVKL 404
+ ++ KE N +V L
Sbjct: 393 AMKDLDGKEVGGSNIEVSL 411
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 130/256 (50%), Gaps = 15/256 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FER G++ E RL F T N+GYAFV + NKE A+RA+
Sbjct: 77 EVFVGKIPRDMYEDELVPLFERAGKLYEFRLMMEF-TGENRGYAFVMYTNKEAAQRAIQM 135
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V GK G S DN LF+G+I TK+ + ++K +GV ++ +
Sbjct: 136 LDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKV-TDGVVDVIMYPSSTD 194
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAFV + H A A ++L F ++++V +AEP ++ + E+M V+
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPG--TFQLWGQSIQVDWAEPEKDVEEEVMQRVRV 252
Query: 331 VFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+++ + E + + + G V R+ K DY F+ + E A+A +
Sbjct: 253 IYVRNLMLSTTEETLFQEFSHFKPGSVERV--------KKLTDYAFVHYYCREDALAALA 304
Query: 389 AINNKEFSDGNSKVKL 404
+N + +V L
Sbjct: 305 IMNGVQIDGATIEVML 320
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 6/209 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRI 358
+F+ + E + +G + R+
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 135/262 (51%), Gaps = 18/262 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + T N+GY F+ F KE A+ A T+
Sbjct: 159 EVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAEEA-TK 217
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK S N LFVGNI + +K+ I ++ EG+ ++ + +
Sbjct: 218 LDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKK-TEGLVDVIIYRSAEK 276
Query: 271 EGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E +RGFAF+ + H A A ++L + + + V V +A+P+ PD E M+ VK
Sbjct: 277 ENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCD--VIVDWADPVDNPDDETMSKVK 334
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ ++++ +G + R K KDYGFI F + A+ + A
Sbjct: 335 VLYVRNLTSEVTEDIMKEKFGEFGKIER--------AKKVKDYGFIHFEDRDDAIKAMQA 386
Query: 390 INNKEFSDGNSKVKLRARLSNP 411
+N ++ K+++ L+ P
Sbjct: 387 MNGQKI----GKLEIEVSLAKP 404
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA V
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVY 338
Query: 330 TVFLDGVPPH 339
+ PPH
Sbjct: 339 DDYYYYGPPH 348
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 15/248 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G L RD ++++ ++F IG + E+RL +FS + N+G+AF++FA+++ A RA+
Sbjct: 43 EIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMDFSGS-NRGFAFIQFAHRQDANRAIQL 101
Query: 212 MKNPVICGK-RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
M N + + G S DN LF+G I T ++E I+ +++ EGV + + S I
Sbjct: 102 MDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERL-TEGVTKVIVYSSITD 160
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAFV + H A A ++L + E + V +AEP E + ++M+ V
Sbjct: 161 KTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKE--IAVDWAEPENEIEEDVMSQVTV 218
Query: 331 VFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
+++ + E +R+ D V ++ + R D+ FI FS+ E A +
Sbjct: 219 LYVRNLSLTTTEQVLRELFNRVSDDNVQKLKMMR--------DFAFIHFSSREKAEKAMR 270
Query: 389 AINNKEFS 396
+N+ E +
Sbjct: 271 NMNHTEIN 278
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 139/260 (53%), Gaps = 12/260 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + + ++GYAFV F K A + + E
Sbjct: 490 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKVVKE 547
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ +
Sbjct: 548 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLM-KVSSA 605
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + H A A Y R + F V++A+P + D + VK+V
Sbjct: 606 NRNRGYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSVSTSQVKSV 662
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ + +G++ ++VL + + YGF+ F A + A+
Sbjct: 663 YVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQ 718
Query: 392 NKEFSDGNSKVKLRARLSNP 411
N E + + +V L L+ P
Sbjct: 719 NTERYELDGQV-LDCSLAKP 737
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 139/260 (53%), Gaps = 12/260 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + + ++GYAFV F K A + + E
Sbjct: 521 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKVVKE 578
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ +
Sbjct: 579 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLM-KVSSA 636
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
+RG+ FV + H A A Y R + F V++A+P + D + VK+V
Sbjct: 637 NRNRGYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSV 693
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
++ +P + + Q++ + +G++ ++VL + + YGF+ F A + A+
Sbjct: 694 YVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRALQ 749
Query: 392 NKEFSDGNSKVKLRARLSNP 411
N E + + +V L L+ P
Sbjct: 750 NTERYELDGQV-LDCSLAKP 768
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 133/258 (51%), Gaps = 19/258 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VF R G++ E+RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFGRAGKIYELRLMMEFS-GENRGYAFVMYTTKEEAQLAIKI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKV-TEGVVDVIVYPNATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDPEIMAHV 328
+ +RGFAFV + H A A +RL P +GH T++V +A+P + D E M V
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRL-IPGTFQPWGH---TIQVDWADPEKIVDEETMQRV 235
Query: 329 KTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
K +++ + E++I+ + + G V R+ K +DY F+ F E AVA
Sbjct: 236 KVLYVRNLMISTTEDKIKAEFNKFKPGVVERV--------KKLRDYAFVHFFHREDAVAA 287
Query: 387 INAINNKEFSDGNSKVKL 404
++ +N K + +V L
Sbjct: 288 MSVMNGKCIDGASIEVTL 305
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 59/301 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE+ G++ ++RL + + N+GYAF+ F N+E A++A+ E
Sbjct: 161 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 220
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ-------KLKDYGVE------ 257
+ N + GK S N LFVGNI + KE I + KL DY +
Sbjct: 221 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRKGKKIG 280
Query: 258 ---------------------------------GVENINLVSDIQHEGLSRGFAFVMFSC 284
G+ + + S + +RGF F+ +
Sbjct: 281 VTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCFLEYES 340
Query: 285 HVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN 343
H A A +RL + V+G + V +A+P EPD + M+ V+ +++ + E
Sbjct: 341 HKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEE 397
Query: 344 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403
++++ + YG + R+ K KDY FI F + AV +N +N KE + +V
Sbjct: 398 KLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIEVS 449
Query: 404 L 404
L
Sbjct: 450 L 450
>gi|3341691|gb|AAC27473.1| putative heterogeneous nuclear ribonucleoprotein [Arabidopsis
thaliana]
Length = 300
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
+FVG++ ++E +K+ G V + ++ + Q + S+G AF+ F+ A A
Sbjct: 131 IFVGSLDKGASEEDLKKVFGHVG--EVTEVRILKNPQTKK-SKGSAFLRFATVEQAKRAV 187
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
K L+ +++ ++ + ++ VKT+F+DG+ P W E ++RD +K Y
Sbjct: 188 KELKNTELLIVGESIISNLSILLIVISFMIFLVLQVKTIFIDGLLPSWNEERVRDLLKPY 247
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402
G + ++ LARNM +A+RKD+GF+ F THEAAV+C INN E +G KV
Sbjct: 248 GKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKV 297
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 123 EPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRL 182
E ET++ E E + + +R+ +KE EIF+G LD+ A++ED++KVF +GEV EVR+
Sbjct: 101 EEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRI 160
Query: 183 HKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP--VICGKRCGTAPS------------- 227
KN T ++KG AF++FA E AKRA+ E+KN +I G+ + S
Sbjct: 161 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKNTELLIVGESIISNLSILLIVISFMIFLV 220
Query: 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
T+F+ + +W +E ++ LK YG +E + L ++ + F FV F H
Sbjct: 221 LQVKTIFIDGLLPSWNEERVRDLLKPYG--KLEKVELARNMPS-ARRKDFGFVTFDTHEA 277
Query: 288 AMAAYKRLQKPDV 300
A++ K + ++
Sbjct: 278 AVSCAKFINNSEL 290
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 7/244 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ DAT+ D++ IGEV EVR+ + + KGYAFV F +K+ A A+
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+ N GKR + ++ LF+GN+ W + IK+ G GV+ + L + Q+
Sbjct: 153 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNM 211
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE-PLREPDPEIMAHVKT 330
G +RGFAF+ + H A A Y + + + F + V++AE + VK
Sbjct: 212 GRNRGFAFIEYYNH--ACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKA 269
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ +P + +++ + +G ++++V+ + YGF+ ++ + + A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER---TSVMRAL 326
Query: 391 NNKE 394
N E
Sbjct: 327 KNTE 330
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 323 EIMA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
E++A H V+L G+P E ++ G+V + + R + K Y F+ F +
Sbjct: 83 ELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRS 142
Query: 380 HEAAVACINAINNKEF 395
+ A I+ +NN +F
Sbjct: 143 KDLAAEAIDTLNNTDF 158
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 34/288 (11%)
Query: 107 DYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQED 166
D + +E+E + + P A E+++GGL D + ED
Sbjct: 83 DPKDENEKEKHAELLALPPHGA-----------------------EVYVGGLSSDVSSED 119
Query: 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226
++++FE +GEV+EVR+ NK YAF+ F KE A +A+ ++ N + GK+ +
Sbjct: 120 LKRLFESVGEVVEVRMR---GKGDNKAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVSS 176
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286
S+ + LF+GN+ WT + K +++ G GV ++L+ G ++G+ F+ +
Sbjct: 177 SQAKNRLFIGNVPRDWTPDDFKTAVEEVG-PGVLQVDLMK-APGSGRNKGYGFIEYYNQA 234
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR 346
A A +++ P+ F V++A+P + A VK++++ +P + Q++
Sbjct: 235 CAEYAKQKMSTPE--FKLDTNAPTVSWADPKNANEATSTAQVKSLYVKNIPKTVTQEQLK 292
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 394
+ G++ ++V+ S + + YGF+ F A + A+ N E
Sbjct: 293 KLFEHVGEITKVVIPPAKSGHENR-YGFVHFKERSMA---MKALKNTE 336
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 52/215 (24%)
Query: 129 ETLEDERR------------------ELNAI-------AKDRKIK-----KEHEIFIGGL 158
E +E R L AI K +KIK ++ +FIG +
Sbjct: 129 EVVEVRMRGKGDNKAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNV 188
Query: 159 DRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
RD T +D + E +G V++V L K + RNKGY F+++ N+ A+ A +M P
Sbjct: 189 PRDWTPDDFKTAVEEVGPGVLQVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEF 248
Query: 218 CGKRCGTAPS----------EDNDT-----LFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
K AP+ E T L+V NI T T+E +K+ + G E
Sbjct: 249 --KLDTNAPTVSWADPKNANEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVG----EIT 302
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297
+V G + FV F AM A K ++
Sbjct: 303 KVVIPPAKSGHENRYGFVHFKERSMAMKALKNTER 337
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 128/255 (50%), Gaps = 13/255 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + +D ++++ +FE+ G++ ++RL + T N+GYAF+ F K+ A+ A+
Sbjct: 174 EVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQEAVNM 233
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S +N LFVGNI ++ + ++ + G+ ++ + +
Sbjct: 234 FDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHA-PGLTDVIIYTSPDD 292
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL + V+G + V +A+P EPD E M+ VK
Sbjct: 293 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGC---DIIVDWADPQEEPDSETMSKVK 349
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E ++++ + +G R K +DY F+ F E A+ +
Sbjct: 350 VLYVRNLTQEVTEEKLKEVFEEFG-------GRVERVKKIRDYAFVHFEDREDALRALEK 402
Query: 390 INNKEFSDGNSKVKL 404
NN+E +V L
Sbjct: 403 NNNREAGGAPMEVSL 417
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 16/245 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI+IG + + ++ + +FE++G++ ++RL + T +N+GYAF+ F K A A
Sbjct: 198 HEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAK 257
Query: 211 EMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--D 267
+ + ++ GK S N LF+GNI + +KE I + K++ EGV + + + D
Sbjct: 258 KFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVVDCIIYTSPD 316
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT-VKVAFAEPLREPDPEIMA 326
+RGF F+ F H A A +++ + P + + V +AE EPD E M+
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKL---RPWNSDLVVDWAEQQEEPDEETMS 373
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK +++ + E Q+++ +G+V R K +DY FI F E A+
Sbjct: 374 KVKVLYVRNLKEAVTEEQLKEMFAAHGEVER--------AKKIRDYAFIHFKEREPALKA 425
Query: 387 INAIN 391
+ A+N
Sbjct: 426 MEALN 430
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 11/255 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFI L D + ++ ++F IG + EVRL ++S N+GYAF+++ A A+
Sbjct: 28 EIFIKNLPDDVFEIELFQIFSTIGRIYEVRLPVHWS-GINRGYAFIRYTKISEADAAIKA 86
Query: 212 MKNPVICGKR-CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
I KR S DN LF+ + N T E I+ L V+ V+ + + +++
Sbjct: 87 FDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTV-VDNVKKVYVYPTLEN 145
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ RG+AFV F H DA A KR+ PDV F E+ A+A PL + I+ +
Sbjct: 146 PSIFRGYAFVEFKSHRDAAIA-KRILTPDVCFNLFEKKCIAAWANPLPFLNESILKTINI 204
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINA 389
+F+ VP K N I+ I+ I+ ++ KR ++ F+ F HE A +N
Sbjct: 205 LFIRNVPKEIKSNTIKKIIEN------ILEDNSLQKVKRLNNFAFLTFRNHEKAKFALNY 258
Query: 390 INNKEFSDGNSKVKL 404
I + G+ K+++
Sbjct: 259 IKDHPSLLGSEKIQI 273
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 21/265 (7%)
Query: 164 QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRC 222
++++ VFER G++ E RL FS N+GYAFV + KE A+ A+ + N I GK
Sbjct: 3 EDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
G S DN LF+G I KE I ++K EGV ++ + + +RGFAFV +
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEY 120
Query: 283 SCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341
H AMA K + ++GH T++V +A+P +E D E M VK +++ +
Sbjct: 121 ESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVKVLYVRNLMISTT 177
Query: 342 ENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399
E I+ + + G V R+ K +DY F+ F E AVA ++ +N K DG
Sbjct: 178 EETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMNGKCI-DGA 228
Query: 400 SKVKLRARLSNPMPKTQAVKGGMSG 424
S + L+ P+ K + ++G
Sbjct: 229 S---IEVTLAKPVNKENTWRQHLNG 250
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 43/277 (15%)
Query: 152 EIFIGGLDRDATQEDVRKVFE-RIGEVIEVRLHKNFSTN-RNKGYAFVKFANKEHAKRAL 209
EIFI L AT+E V+KV E + GEV+ +R+ + G A V+F N++HA RAL
Sbjct: 251 EIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARAL 310
Query: 210 TEM-----------------KNPVICG----------KRCGTA-PSEDNDTLFVGNICNT 241
+ N + G K+ TA PS + +TLF+G + T
Sbjct: 311 ERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTARPSGNPNTLFIGGLNRT 370
Query: 242 WTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
W KE + LK++ V+G+ N + D ++ L+RGF F F AA+ + K
Sbjct: 371 WKKETV---LKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDK 427
Query: 300 VVFGHPERTVKVAFAEPL-REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 358
+ E V + +AE + D E + V++ G+ E +R YG ++++
Sbjct: 428 LTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKV 480
Query: 359 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
V+ + TA+RKD+ I++S EAA CI +++ +F
Sbjct: 481 VVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDF 517
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE G + E RL FS N+GYAFV + ++E A RA+
Sbjct: 74 EVFVGKVPRDMYEDELVPLFESAGRIYEFRLMMEFS-GENRGYAFVMYTSREEAVRAIQM 132
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ V G+ G S DN LF+G+I KE I ++++ +GV ++ +
Sbjct: 133 LDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKV-TDGVVDVIVYPSSSD 191
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAFV + H AMA K + ++GHP ++V +AEP ++ + E M V+
Sbjct: 192 RNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHP---IQVDWAEPEKDMEEEAMQRVR 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + + G V R+ K DY F+ F + A+A +
Sbjct: 249 VLYVRNLMLDTTEETLRREFSRFKPGSVERV--------KKLTDYAFVHFRSRSEALATL 300
Query: 388 NAINNKEFSDGNSKVKL 404
+N + +V L
Sbjct: 301 AVMNGVQIDGTTVEVSL 317
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 18/266 (6%)
Query: 132 EDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
E+ +R+ A K +K EIFIG L RD ++++ V E G E+R+ +F+ N N
Sbjct: 56 ENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPAFELRMMLDFNGN-N 114
Query: 192 KGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQK 250
+G+ FV + + + AL + N I G+ G S DN LFVG I + ++ I ++
Sbjct: 115 RGFCFVTYQTRNESHAALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEE 174
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTV 309
+K EGV ++ + + +RGF+FV + H A A ++L + ++GH +
Sbjct: 175 MKKV-TEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGH---QI 230
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMST 366
V +AEP E + +M VK +++ + H E+ + ++ G G + R+
Sbjct: 231 AVDWAEPEIEVEESVMETVKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERV-------- 282
Query: 367 AKRKDYGFIDFSTHEAAVACINAINN 392
K +DY F+ F+T + A+ + +NN
Sbjct: 283 KKIRDYAFVHFNTRDNALKAMKELNN 308
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 98.2 bits (243), Expect = 1e-17, Method: Composition-based stats.
Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 23/255 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
EI+IG + + ++ + +FE+ G++ ++R+ + + NKGYAFV + +K A A
Sbjct: 215 EIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAKK 274
Query: 211 ----EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGVEGVENINLV 265
E+KN GKR S N LFVGNI + KE I ++ K GV+ + ++ +
Sbjct: 275 FEGYEIKN----GKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKVSGVQNITDVIMY 330
Query: 266 SDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
S+ +RGF F+ F+ H A A +RL F + V +AE + D E
Sbjct: 331 SNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSR--FRPWMMELVVEWAETQDDVDKE 388
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M+ VK ++L + E ++R + YG V R+ + KDY F+ F+ E A
Sbjct: 389 TMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV--------KRIKDYAFVHFAEREQA 440
Query: 384 VACINAINNKEFSDG 398
I A+ +EF DG
Sbjct: 441 EKAIEAMKGQEF-DG 454
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+ G+V E+R+ +F+ N N+GYAFV F N++ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGN-NRGYAFVTFTNRQDARDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFL 333
+++
Sbjct: 232 ILYV 235
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+ G+V E+R+ +F+ N N+GYAFV F N++ A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGN-NRGYAFVTFTNRQDARDAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I +++ +GV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFL 333
+++
Sbjct: 232 ILYV 235
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 151/343 (44%), Gaps = 51/343 (14%)
Query: 180 VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNI 238
+R+ +F+ N N+GYAFV F+NK AK A+ ++ N I G+ G S DN LFVG I
Sbjct: 1 MRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGI 59
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH-VDAMAAYKRLQK 297
T +E I ++K EGV ++ + + +RGFAFV + H AMA K L
Sbjct: 60 PKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPG 118
Query: 298 PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDV 355
++GH + V +AEP E D + M+ VK +++ + E I + G V
Sbjct: 119 RIQLWGH---GIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAV 175
Query: 356 IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKT 415
R+ K +DY F+ FS E AV + A+N K DG+ + L+ P+ K
Sbjct: 176 ERV--------KKIRDYAFVHFSNREDAVEAMKALNGKVL-DGSP---IEVTLAKPVDKD 223
Query: 416 QAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRGRGFYQHGRNH---SSRM 472
++ RY RG+G R +G Y G+ + ++ +
Sbjct: 224 -------------------SYVRYTRGTG------GRGTMLQGEYTYSLGQVYDPTTTYL 258
Query: 473 GPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGYNAPS-RAAAGA 513
G + Y F +G S R APS R AAG
Sbjct: 259 GAPVFYAPQTYAAIPNLHFPATKGHLSNRAIIRAPSVRGAAGV 301
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFS-TNRNKGYAFVKFANKEHAKRALT 210
+F+GG+ + +E++ +++ E V++V ++ + + +N+G+AFV++ + A A
Sbjct: 54 LFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARR 113
Query: 211 EMKNPVICGKRCGTA-------PSEDNDT------LFVGNICNTWTKEAIKQKLKDYGVE 257
++ I G A D DT L+V N+ + ++E I+++ +
Sbjct: 114 KLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG 173
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317
VE + + D +AFV FS DA+ A K L V+ G P ++V A+P+
Sbjct: 174 AVERVKKIRD---------YAFVHFSNREDAVEAMKALNG-KVLDGSP---IEVTLAKPV 220
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL- 209
HEI++G + D ++ + +FE+ G++ ++RL + T ++GYAFV + KEHA A
Sbjct: 218 HEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANAAK 277
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
T + + GK S N LF+GNI T +K+ I ++LK + EGV ++ + S
Sbjct: 278 TYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPD 336
Query: 270 HEGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
++ + +RGF FV F H A +++ + + + + V V +AE EPD + M+ V
Sbjct: 337 NDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKV 394
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +++ + E ++ + K Y + R+ K KDY FI F+ E + +
Sbjct: 395 KVLYIRNIKEAVTEEKLTEIFKEYASLDRV--------KKVKDYAFIHFNEREDCMKAME 446
Query: 389 AINNKEF 395
N KE
Sbjct: 447 QWNGKEL 453
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 18/236 (7%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K EIF+G + RD ++++ +F ++ + + RL +F+ N +G+AFV + N A++A
Sbjct: 29 KGSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDFTGN-TRGFAFVTYYNVWDAQKA 87
Query: 209 LTEMKNPVICG----KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ + I + S DN LF GN+ T++ I+ +LK + ++G+ +
Sbjct: 88 VLKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVIT 146
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV--FGHPERTVKVAFAEPLREPDP 322
+ +RGFAFV F H A A ++L V+ +G R + V +AEP DP
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWG---RKLYVDWAEPEPMVDP 203
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDF 377
++M VK +++ VP W ++++ I K G+ I + R KR +Y FI F
Sbjct: 204 DVMTQVKVLYMKNVPTFWTLDRLKTYISKTVGE---IFIER---IYKRDNYAFIHF 253
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 12/237 (5%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K EIFIG L D ++++ +F + G + +RL +F R +GY F+ + +E A A
Sbjct: 404 KGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMDF-FGRTRGYGFISYFTQEDAHAA 462
Query: 209 LTEMKNPVICGK-RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ N I K + + S DN LF+GNI T I+ L+ Y VEG+ +I +
Sbjct: 463 VAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHE 521
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 326
++ ++RGF FV F H A A ++L ++ ++G P + V +AEPL +P+I+
Sbjct: 522 PYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKP---IFVDWAEPLPVVNPQILK 578
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V ++L +P +++ + D I+ K ++ F+ F+ + A
Sbjct: 579 QVTKLYLSNLPMTLSSEELKSFLCELLDPSHII-----KVHKINNFAFVHFTLRKYA 630
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL- 209
HEI++G + D ++ + +FE+ G++ ++RL + + ++GYAFV + NKE A A
Sbjct: 200 HEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAK 259
Query: 210 TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
T + + GK S N LF+GNI T +K+ I ++LK + EGV ++ + S
Sbjct: 260 TYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPD 318
Query: 270 HEGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+E + +RGF FV F H A +++ + + + + V V +AE EPD + M+ V
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKV 376
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
K +++ + E ++ + K Y + R+ K KDY FI F+ + + +
Sbjct: 377 KVLYIRNIKEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAME 428
Query: 389 AINNKEF 395
N KE
Sbjct: 429 EWNGKEL 435
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + R+ ++++ +FER G++ E+RL FS N+G+AFV + KE A+ A+
Sbjct: 62 EVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEFS-GENRGFAFVMYTTKEDAQLAIKI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I KE I +++K EGV ++ + D
Sbjct: 121 LNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+RGFAFV + H A A +RL F R V+V +A P +E D E M VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPG--TFQLWGRAVQVDWACPEKEVDAETMRRVKV 237
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E+ I+ + + R+V K +DY F+ F E AVA ++ +
Sbjct: 238 LYVRNLMISTTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSVM 291
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
N K DG S + L+ P+ K K ++G
Sbjct: 292 NGKCI-DGAS---IEVTLAKPVNKESTWKQHLNG 321
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + R+ ++++ +FER G++ E+RL FS N+G+AFV + KE A+ A+
Sbjct: 62 EVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEFS-GENRGFAFVMYTTKEDAQLAIKI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I KE I +++K EGV ++ + D
Sbjct: 121 LNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATD 179
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+RGFAFV + H A A +RL F R V+V +A P +E D E M VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPG--TFQLWGRAVQVDWACPEKEVDAETMRRVKV 237
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+++ + E+ I+ + + R+V K +DY F+ F E AVA ++ +
Sbjct: 238 LYVRNLMISTTEDTIKAEFNKFKP--RVV----ERVKKLRDYAFVHFYNREDAVAAMSIM 291
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
N K DG S + L+ P+ K K ++G
Sbjct: 292 NGKCI-DGAS---IEVTLAKPVNKESTWKQHLNG 321
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 137 ELNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
E+ A+ + H +++G LD T+ + ++F IG+V +R+ ++ T R+ GY
Sbjct: 26 EVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEA 246
A+V + + H +RAL E+ +I GK C S+ + L F+ N+ + +A
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 145
Query: 247 IKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDV 300
+ +G NI Q E G+S+G+ FV + A A K L V
Sbjct: 146 LHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Query: 301 VFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
GH +R K E+ A+ +++ + P ++ + R + +G++
Sbjct: 201 FVGHHISKKDRQSKFE----------EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 251 SATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 16/258 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G L R + + +V +G + E+R S N+GY F + + E AKRA E
Sbjct: 63 EVFVGKLPRAISDMRLIQVLSAVGPLYELRQMLEPS-GVNRGYCFAVYQSLEGAKRACIE 121
Query: 212 ---MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ N I G+R G S DN LF+G I + I +++ + EG E + +
Sbjct: 122 SLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKH-TEGAEELVVYPS 180
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKR-LQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
I + +RGFAFV + H A A K+ LQ+P +++G +TV + +AEP ++ D +IM
Sbjct: 181 ILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWG---KTVCIDWAEPEQQVDSDIME 237
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
+VK +++ + + E +R + GD+ I + K +D+ F+ F+T E A+
Sbjct: 238 NVKILYVRNLMLNTDEITLRKYFE-MGDIHCIERVK-----KIRDFAFVHFTTREKALNA 291
Query: 387 INAINNKEFSDGNSKVKL 404
+N +N+ + +V L
Sbjct: 292 LNKLNHTKLDGSTIEVCL 309
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 16/235 (6%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K EIF+G + RD ++++ +F ++ + + RL +F+ N +G+AFV + N A++A
Sbjct: 29 KGSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDFTGN-TRGFAFVTYYNVWDAQKA 87
Query: 209 LTEMKNPVICG----KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ + I + S DN LF GN+ T++ I+ +LK + ++G+ +
Sbjct: 88 VLKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVIT 146
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE-RTVKVAFAEPLREPDPE 323
+ +RGFAFV F H A A ++L V+ P R + V +AEP DP+
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVI--RPWGRKLYVDWAEPEPMVDPD 204
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+M VK +++ VP W ++++ I K G+ I + R KR +Y FI F
Sbjct: 205 VMTQVKVLYMKNVPTFWTLDRLKTYISKTVGE---IFIER---IYKRDNYAFIHF 253
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEEL 123
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 178
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 179 CKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE- 237
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ +P + + R+ + +GDV LAR+ T K + +GF++
Sbjct: 238 -------MKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVN 290
Query: 377 FSTHEAAVACINAINNKEF 395
F HE A ++ +N K+F
Sbjct: 291 FINHEHAATAVDELNGKDF 309
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 15/248 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
HEI++G + D ++ + +F G++ + RL + T ++GYAFV + KEHA A
Sbjct: 225 HEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNAAK 284
Query: 211 EMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+ + + GK S N LF+GNI T +K+ I ++LK + EGV ++ + S
Sbjct: 285 KFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHA-EGVTDVIVYSVPD 343
Query: 270 HEGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPLREPDPEIMAH 327
+E + +RGF FV F H A +++ + + P V V +AE EPD + M+
Sbjct: 344 NEKIRNRGFCFVDFIDHKTASDIKRKIAQHKI---RPFNADVYVDWAEQQEEPDEDTMSK 400
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
VK +++ + E ++ + K Y + R+ K KDY FI F+ + + +
Sbjct: 401 VKVLYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCMKAM 452
Query: 388 NAINNKEF 395
N KE
Sbjct: 453 EQWNGKEL 460
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDE- 236
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ + P +++ R + YGDV LAR+ T K + +GF++
Sbjct: 237 -------MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F++HE A + +N KEF
Sbjct: 290 FTSHEDASKAVQELNEKEF 308
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 172 CKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 229
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + P ++Q R + +GDV +AR+ K + +GF++
Sbjct: 230 ------EMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARD-PDGKSRGFGFVN 282
Query: 377 FSTHEAAVACINAINNKEF 395
F+THEAA A + +NNK+F
Sbjct: 283 FTTHEAASAAVEELNNKDF 301
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 19/253 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ +FE G++ RL +F+ N+GY F + N+ K+A+ +
Sbjct: 66 EVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTKQAVDQ 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S DN LF+G I + TK+ I ++ +GV+++ + +
Sbjct: 125 LNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKV-TDGVKDVIVYPSLVD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP R+ D IM+ V+
Sbjct: 184 KTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGH---QIAVDWAEPERQVDENIMSKVR 240
Query: 330 TVFLDGVPPHWKENQIRDQ----IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+++ + H EN ++D I V R+ K +DY F+ F A+
Sbjct: 241 ILYVRNLMLHTTENAVKDHFNQAIHSMDAVERV--------KKIRDYAFVHFHNRIDAIT 292
Query: 386 CINAINNKEFSDG 398
+ +++ +G
Sbjct: 293 ALKQLDDICVKNG 305
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 19/253 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ +FE G++ RL +F+ N+GY F + N+ K+A+ +
Sbjct: 66 EVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTKQAVDQ 124
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S DN LF+G I + TK+ I ++ +GV+++ + +
Sbjct: 125 LNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKV-TDGVKDVIVYPSLVD 183
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP R+ D IM+ V+
Sbjct: 184 KTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGH---QIAVDWAEPERQVDENIMSKVR 240
Query: 330 TVFLDGVPPHWKENQIRDQ----IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
+++ + H EN ++D I V R+ K +DY F+ F A+
Sbjct: 241 ILYVRNLMLHTTENAVKDHFNQAIHSMDAVERV--------KKIRDYAFVHFHNRIDAIT 292
Query: 386 CINAINNKEFSDG 398
+ +++ +G
Sbjct: 293 ALKQLDDICVKNG 305
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226
V KVF GE+IEVR+ + ++KGY FV+F KE A +A+ E ++ GK+ G P
Sbjct: 193 VNKVFSTCGEIIEVRMMTD-QNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVP 251
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-------SDIQHEGLSRGFAF 279
S D TLF GN+ W+ + K+ + V +++L + + + +RGFAF
Sbjct: 252 STDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAF 310
Query: 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH 339
V FS H A A++ K D + G V EP E DPE +A + F+ +P
Sbjct: 311 VKFSSHAAAARAHRMGSKSDFLLGDSWHPVVEWAEEP--EIDPEELAKITIAFVGNLPKD 368
Query: 340 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS----------THEAAVACINA 389
E+ ++ +G V +++L++ + GF+ F+ H + C++
Sbjct: 369 ANEDYLKKLFGPFGKVEKVLLSKK----GQSPVGFVHFAKRSCLLMLHVLHPGSCTCVHP 424
Query: 390 I 390
+
Sbjct: 425 L 425
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 137 ELNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
E+ A+ + H +++G LD T+ + ++F IG+V +R+ ++ T R+ GY
Sbjct: 26 EVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEA 246
A+V + + H +RAL E+ +I GK C S+ + L F+ N+ + +A
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 145
Query: 247 IKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDV 300
+ +G NI Q E G+S+G+ FV + A A K L V
Sbjct: 146 LHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Query: 301 VFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
GH +R K E+ A+ +++ + P ++ + R + +G++
Sbjct: 201 FVGHHISKKDRQSKFE----------EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 251 SATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 137 ELNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
E+ A+ + H +++G LD T+ + ++F IG+V +R+ ++ T R+ GY
Sbjct: 26 EVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEA 246
A+V + + H +RAL E+ +I GK C S+ + L F+ N+ + +A
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 145
Query: 247 IKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDV 300
+ +G NI Q E G+S+G+ FV + A A K L V
Sbjct: 146 LHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Query: 301 VFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
GH +R K E+ A+ +++ + P ++ + R + +G++
Sbjct: 201 FVGHHISKKDRQSKFE----------EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 251 SATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>gi|414871238|tpg|DAA49795.1| TPA: hypothetical protein ZEAMMB73_765896 [Zea mays]
Length = 468
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 15/167 (8%)
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
+ VK+VFLDGVPPHW E+++R+ + +G++ I LARNM TA RKD+GFI F+ ++A+
Sbjct: 118 LYRVKSVFLDGVPPHWDEDKVREIFRKFGEIDSIQLARNMFTAARKDFGFIGFTARQSAL 177
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSG 444
CI +N +G+ KV ++A L P A K G G R F + S
Sbjct: 178 DCIKMVNKDGVGEGSGKVPIKASLQRPR---HAFKKYSRQGSSSLLGVRRGF--VDKSSS 232
Query: 445 RAGHHFNR-ANFQRGRGFYQ--HGRNHSSRMGPTEYDFDNRYTEFHG 488
GHH +R +F R Y H R HS D + R+T G
Sbjct: 233 GRGHHSDRYRHFSPVRHSYSDNHSRRHS-------IDVEERHTSVRG 272
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 12/263 (4%)
Query: 132 EDERRELNA--IAK-DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A +A+ DR+ K E+F+G L RD ++++ + E++G ++E+RL +FS
Sbjct: 33 ENGQRRLTAPEVARGDRQRGKGAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDFSG 92
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F + A+ A + I G R G S DN LF G + T TK
Sbjct: 93 S-TRGYAFALFEDSRVARIACERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEF 151
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
++L ++G+ +I + Q L+RGF FV F H A A ++L V+ E
Sbjct: 152 MEELTKI-LDGITDIYVYPSAQDRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEI 210
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
V A EP D +IM V +F+ + + ++R+ + Y +V + L
Sbjct: 211 AVDWADPEPGDPIDEDIMETVTALFVRNLALDMSQQKVREILYRYTNVPILKL------K 264
Query: 368 KRKDYGFIDFSTHEAAVACINAI 390
K + F+ + EAA +N +
Sbjct: 265 KINHFAFVHYENREAAKTVMNIM 287
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + E + RD + +G++ LAR+ + K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
++H+ A A + A+N+K+F
Sbjct: 285 TSHDNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ +D+D T+E+ R +FE+ GE+ L ++ + +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F + ++A A+ + + G++
Sbjct: 282 VNFTSHDNAAAAVEALNDKDFKGQKL 307
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + E + RD + +G++ LAR+ + K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
++H+ A A + A+N+K+F
Sbjct: 285 TSHDNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ +D+D T+E+ R +FE+ GE+ L ++ + +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F + ++A A+ + + G++
Sbjct: 282 VNFTSHDNAAAAVEALNDKDFKGQKL 307
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + E + RD + +G++ LAR+ + K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
++H+ A A + A+N+K+F
Sbjct: 285 TSHDNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ +D+D T+E+ R +FE+ GE+ L ++ + +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F + ++A A+ + + G++
Sbjct: 282 VNFTSHDNAAAAVEALNDKDFKGQKL 307
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 17/247 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+FIG + RD ++++ +FE+ G V + RL + T +N+GYAF+ F A++ +
Sbjct: 169 EVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAARKCVEM 228
Query: 212 MKNPVICGKR-CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
I KR S+ N+ LFVG+I T TK+ I + + G+ ++ L ++
Sbjct: 229 YDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKH-TTGLTDVILYYQVEE 287
Query: 271 E----GL--SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ GL +RGF F+ + H A A +RL V + V V +A+P+ P +I
Sbjct: 288 KNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWN-NLIVTVDWADPINTPADDI 346
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
M VK +++ + E+ + +G++ ++ K KDY F+ F + A
Sbjct: 347 MDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV--------KKLKDYAFVHFKNRDEAR 398
Query: 385 ACINAIN 391
+ + +N
Sbjct: 399 SAMTELN 405
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ + R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 178 CKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE- 236
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ +P E + R+ + +GDV LAR+ T K + +GF++
Sbjct: 237 -------MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F HE A ++ +N K+F
Sbjct: 290 FINHEHAATAVDELNGKDF 308
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 178 CKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE- 236
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ +P E + R+ + +GDV LAR+ + K + +GF++
Sbjct: 237 -------MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F HE A ++ +N K+F
Sbjct: 290 FINHEHAATAVDELNGKDF 308
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 62 LYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 122 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 176
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 177 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 234
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + P E+ R + YGDV LAR+ K + +GF++
Sbjct: 235 ------EMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQE-GKSRGFGFVN 287
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A ++ +N K+F
Sbjct: 288 FTTHESAAKAVDELNGKDF 306
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
+D + + E+F+GGL R AT+ +R++F GE+I+VR+ K+ +KGY FV+F+ +
Sbjct: 67 QDPRTARGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKD-QNGHSKGYGFVRFSKR 125
Query: 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT----KEAIKQKLKDYGVEG 258
E+A A + + GKR S D DT+F GN+C WT +E I + KD
Sbjct: 126 EYANTAKRQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIHKTFKDVVSVD 185
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCH 285
+ + ++RGFAFV F+ H
Sbjct: 186 LAMASNRGSSNKRNINRGFAFVRFTSH 212
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 223
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + P + R+ + YG++ L+R+ T K + +GF++F
Sbjct: 224 QSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNF 283
Query: 378 STHEAAVACINAINNKEF 395
H++A A + +N+KE+
Sbjct: 284 VNHDSAAAAVEDLNDKEY 301
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ L+ + T E+ R++FE+ GE+ L ++ T +++G+ F
Sbjct: 221 KDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGF 280
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F N + A A+ ++ + G++
Sbjct: 281 VNFVNHDSAAAAVEDLNDKEYKGQKL 306
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 21/253 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVF----ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
E+F+GG+ + A++ DVR E + V+L + +T +N+GYAFV + ++E A
Sbjct: 12 ELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFVAYPSREDAAA 71
Query: 208 ALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS- 266
A ++ I K+ + + +F+GN+ T+ + Q L+D G GVE + +
Sbjct: 72 AAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCGGVEKLEMPKN 131
Query: 267 -DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM 325
+ + ++GF F F A A K L + + G P V +A+P + PDP
Sbjct: 132 RNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFLGRP---VTARWADP-KLPDPSTT 187
Query: 326 AHVKTVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLAR----NMSTAKRKDYGFID 376
VK+V++ +PP E +++ YGDV + + + + S + ++++ F+
Sbjct: 188 --VKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASAKRNFAFVH 245
Query: 377 FSTHEAAVACINA 389
+++ E+A+A A
Sbjct: 246 YASRESALAAAEA 258
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 38/230 (16%)
Query: 122 EEPADEAETLEDERRELNAIAKDRKIK-----KEHEIFIGGLDRDATQEDVRKVFERIG- 175
E+ A AE L ++ E D+KI+ +H +FIG +DR T+ +V + G
Sbjct: 67 EDAAAAAEKLNEKAIE------DKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGC 120
Query: 176 ---EVIEVRLHKNFS-TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA------ 225
E +E+ ++N + ++ KG+ F F N A+RA+ + + R TA
Sbjct: 121 GGVEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFLGRPVTARWADPK 180
Query: 226 ---PSEDNDTLFVGNICNTWT-----KEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRG 276
PS +++VGN+ + +E +K YG VE V R
Sbjct: 181 LPDPSTTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASAKRN 240
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK-------VAFAEPLRE 319
FAFV ++ A+AA + ++ D P ++ V A+P+++
Sbjct: 241 FAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAKPMKD 290
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A + +++ K EIF+G L RD ++++ V E IG +IE+RL +FS
Sbjct: 33 ENGQRRLTAPEIVRGEKQRVKGAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDFSG 92
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F + + A+RA ++ I G R G S DN LF G + +KE
Sbjct: 93 S-TRGYAFASFEDVKTARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEF 151
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
Q+L +EG+ +I L + L+RGF FV F H A A ++L V+ E
Sbjct: 152 MQELTKI-LEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 210
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 347
V A EP D EIM V +F+ + + ++RD
Sbjct: 211 AVDWADPEPGDPIDEEIMESVTALFVRNLSLDMSQQKVRD 250
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 233
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + E+ R + YGDV LAR+ K + +GF++
Sbjct: 234 ------EMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQE-GKSRGFGFVN 286
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A ++ +NNK+F
Sbjct: 287 FTTHESAFKAVDELNNKDF 305
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 223
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + P + R+ + YG++ L+R+ T K + +GF++F
Sbjct: 224 QSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNF 283
Query: 378 STHEAAVACINAINNKEF 395
H++A A + +N+KE+
Sbjct: 284 VNHDSAAAAVEDLNDKEY 301
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ L+ + T E+ R++FE+ GE+ L ++ T +++G+ F
Sbjct: 221 KDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGF 280
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F N + A A+ ++ + G++
Sbjct: 281 VNFVNHDSAAAAVEDLNDKEYKGQKL 306
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFV 235
+ E+RL +F +N+GYAFV + +K AKRA+ E+ N I G+ G S DN LF+
Sbjct: 54 IYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 236 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
G I +E I +++ EGV ++ + + + +RGFAFV + H A A ++L
Sbjct: 113 GGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 171
Query: 296 QKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 354
+ ++GH + V +AEP + D ++M VK +++ + E+ I+ K +G
Sbjct: 172 MPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK---KSFGQ 225
Query: 355 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414
+ R K +DY F+ F++ E AV +N +N E +G+ L L+ P+ K
Sbjct: 226 FNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EGSC---LEVTLAKPVDK 278
Query: 415 TQ 416
Q
Sbjct: 279 EQ 280
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A I +++ K EIF+G L RD ++++ V E IG +IE+RL +FS
Sbjct: 39 ENGQRRLTAPEIIRGEKQRVKGAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDFSG 98
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F + + A+RA ++ I G R G S DN LF G + +KE
Sbjct: 99 S-TRGYAFASFEDVKTARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEF 157
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
Q+L +EG+ +I L + L+RGF FV F H A A ++L V+ E
Sbjct: 158 MQELTKI-LEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 216
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 347
V A EP D EIM V +F+ + + ++RD
Sbjct: 217 AVDWADPEPGDPIDEEIMESVTALFVRNLNLDMSQQKVRD 256
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 12/237 (5%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K EIFIG L D ++++ +F + G + +RL +F R +GY F+ + +E A A
Sbjct: 43 KGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMDF-FGRTRGYGFISYFTQEDAHAA 101
Query: 209 LTEMKNPVICGK-RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ N I K + + S DN LF+GNI T I+ L+ Y VEG+ +I +
Sbjct: 102 VAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHE 160
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMA 326
++ ++RGF FV F H A A ++L ++ ++G P + V +AEPL +P+I+
Sbjct: 161 PYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKP---IFVDWAEPLPVVNPQILK 217
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V ++L +P +++ + D I+ K ++ F+ F+ + A
Sbjct: 218 QVTKLYLSNLPMTLSSEELKSFLCELLDPSHII-----KVHKINNFAFVHFTLRKYA 269
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 42 LYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 101
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S+ + L F+ N+ + +A+ +G E ++
Sbjct: 102 NYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFG----EILSC 157
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYK-----RLQKPDVVFGH----PERTVKVAFAE 315
+ +G SRGFAFV + A AA K L V GH ER K AE
Sbjct: 158 KVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSK---AE 214
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
R AH VF+ V E + D + +G+ + I L+ + K K +GF+
Sbjct: 215 EQR-------AHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLD-EEGKSKGFGFV 266
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ +HEAA ++ +N+KE +
Sbjct: 267 NYVSHEAAEKAVDELNDKEVN 287
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 117/278 (42%), Gaps = 29/278 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F GE++ ++ + +++G+AFV + E A A+ +
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFGEILSCKVGVD-EDGKSRGFAFVHYQTGEAADAAIKGV 188
Query: 213 KNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ GK+ + +E+ +FV N+ + T++ + + +G
Sbjct: 189 DGMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFG--- 245
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-----VFGHPERTVK--V 311
E +++ + EG S+GF FV + H A A L +V G ++ V+
Sbjct: 246 -ETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDT 304
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ + E E A V ++ + W ++++R + +G + + ++ R
Sbjct: 305 ELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSR 364
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
++GF+ +S+ E A ++ +N K V L R
Sbjct: 365 -NFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQR 401
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 125/252 (49%), Gaps = 16/252 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ D+ +VF IG+V +R+ ++ + ++ GYA+V F + ++AL E+
Sbjct: 49 LYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEEL 108
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I GK C S+ + +L F+ N+ + + +G + + +
Sbjct: 109 NYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFG--KILSCKI 166
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-E 323
+D G S+GF FV + A AA + + ++ E V A+ R+ E
Sbjct: 167 ATD--ENGNSKGFGFVHYEESESAKAAIENVN--GMLLNDHEVYVGPHLAKKDRQSKMRE 222
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
++A+ V++ + +W E+++R+ +G + I L+++ S K + +GF++F HE A
Sbjct: 223 LIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDES-GKSRGFGFVNFEKHEDA 281
Query: 384 VACINAINNKEF 395
V + +NNK+
Sbjct: 282 VKAVEELNNKDI 293
>gi|414867971|tpg|DAA46528.1| TPA: hypothetical protein ZEAMMB73_747315 [Zea mays]
Length = 486
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%)
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
+ VK+VFLDGVPPHW E+++R+ +G++ I LARNM TA RKD+GFI F+ ++A+
Sbjct: 140 LYRVKSVFLDGVPPHWDEDKVREIFGEFGEIDSIQLARNMFTAARKDFGFIGFTARQSAL 199
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNP 411
CI +N +G+ KV ++A L P
Sbjct: 200 DCIKMVNKDGVGEGSGKVPIKASLQRP 226
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 181
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + +++ E+ V V + P ++
Sbjct: 182 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--NMLLN--EKKVYVGYHIPKKDRQSK 237
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ +++ + + + RD YGDV LAR+ S K + +GF++F+TH
Sbjct: 238 FEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTH 296
Query: 381 EAAVACINAINNKEF 395
E A + +N KEF
Sbjct: 297 ECAAKAVEELNGKEF 311
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 24/255 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D + + ++F +G V +R+ ++ T R+ GY++V F A+RA+ M
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAI--KQKLKDYGVEG-VENINLVS 266
+I GK C S+ + +L VGNI EAI KQ + + G + + +V+
Sbjct: 101 NFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVT 160
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRL-----QKPDVVFGHPERTVKVAFAEPLREPD 321
D + G+S G+ +V + A AA ++L +V GH R R
Sbjct: 161 D-REGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMR----------RNDR 209
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
P+I + ++ VP W + ++ + +G+V+ ++R T + +GFI+F+ HE
Sbjct: 210 PDIDSWTN-CYIKNVPYEWDDARLNQEFAQFGEVLSATVSRE-DTNQTLGFGFINFAEHE 267
Query: 382 AAVACINAINNKEFS 396
+AVA + A+N KE++
Sbjct: 268 SAVAAVEALNGKEYT 282
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 30/281 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ L+ + + F G ++ ++ + + GY +V + E A A+ ++
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 213 KNPVICGKRCGTA--------PSEDNDT-LFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+I G+ P D+ T ++ N+ W + Q+ +G E ++
Sbjct: 189 DGMLIDGQEVQVGHFMRRNDRPDIDSWTNCYIKNVPYEWDDARLNQEFAQFG----EVLS 244
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD--VVFGHPERT--VKVAFAEPLRE 319
+ + GF F+ F+ H A+AA + L + E T + V A+ E
Sbjct: 245 ATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSE 304
Query: 320 PDPEIMAHVKTVFLD------GVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMST 366
+ E+ A + +D GV + K ++ +RD+ G + + ++
Sbjct: 305 RERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKD 364
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ + +GF+ +ST E + +N +N K ++ V L R
Sbjct: 365 GRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQR 405
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 116 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L V GH A+ R
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH-------HIAKKDR 223
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + + + R+ + +G++ LAR+ + K + +GF++F
Sbjct: 224 QSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNF 283
Query: 378 STHEAAVACINAINNKEF 395
++HE+A A ++ +N K+F
Sbjct: 284 TSHESAAAAVDNLNEKDF 301
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 233
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + E+ R + YGDV LAR+ K + +GF++
Sbjct: 234 ------EMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQE-GKSRGFGFVN 286
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A ++ +NNK+F
Sbjct: 287 FTTHESASKAVDELNNKDF 305
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 64 LYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 178
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 179 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEE- 237
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ +P + + R+ + +GDV LAR+ + K + +GF++
Sbjct: 238 -------MKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVN 290
Query: 377 FSTHEAAVACINAINNKEF 395
F HE A ++ +N K+F
Sbjct: 291 FINHEHAAKAVDELNGKDF 309
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ + +AT E+ R++FE+ G+V L ++ +N+++G+ F
Sbjct: 229 KDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGF 288
Query: 197 VKFANKEHAKRALTEM 212
V F N EHA +A+ E+
Sbjct: 289 VNFINHEHAAKAVDEL 304
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 223
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + P + R+ + YG++ L+R+ T K + +GF++F
Sbjct: 224 QSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNF 283
Query: 378 STHEAAVACINAINNKEF 395
H++A A + +N+KE+
Sbjct: 284 VNHDSAAAAVEDLNDKEY 301
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ L+ + T E+ R++FE+ GE+ L ++ T +++G+ F
Sbjct: 221 KDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGF 280
Query: 197 VKFANKEHAKRALTEM 212
V F N + A A+ ++
Sbjct: 281 VNFVNHDSAAAAVEDL 296
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 113 EEEFADDDMEEPADEAETLEDERRE-----LNAIAKDRKIKKEHEIFIGGLDRDATQEDV 167
EE + M E +A L+ E + ++A AK R+ +E +IF+GG+ D + D+
Sbjct: 15 EEVSNEQQMSEQCKQANVLQGEDTQPSNDGVSAPAKKREKNEERKIFVGGISWDTNENDL 74
Query: 168 RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP- 226
F + G+V+ V++ + T R++G+AFV+FA E K+AL + K+ + GK+C P
Sbjct: 75 TNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKALAK-KDAELKGKKCEVKPA 133
Query: 227 -SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285
S +N LFVG + + +T+E +++ ++ +G VE I D + + FAF++F
Sbjct: 134 KSRENKKLFVGGLPSDYTEELLRKHMEQFGR--VEEIEWPFD-KVNNKRKNFAFIVFE-- 188
Query: 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
D A P FG VK+A + +R
Sbjct: 189 -DDDGAAAAAALPKQRFGDRTCDVKIAVPQYMR 220
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
+FVG I + + +G V ++ + D + G SRGFAFV F+ A A
Sbjct: 60 IFVGGISWDTNENDLTNHFNQFG--DVVHVQVKYD-HYTGRSRGFAFVEFAT---AEACK 113
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
K L K D + VK P K +F+ G+P + E +R ++ +
Sbjct: 114 KALAKKDAELKGKKCEVK-----------PAKSRENKKLFVGGLPSDYTEELLRKHMEQF 162
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412
G V I + KRK++ FI F + A A A+ + F D VK+ + M
Sbjct: 163 GRVEEIEWPFDKVNNKRKNFAFIVFEDDDGAAA-AAALPKQRFGDRTCDVKI--AVPQYM 219
Query: 413 PKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGH 448
+ GMS + + +S YG +G G+
Sbjct: 220 RPQKTAGPGMSQQWPGHYHDYSGYSGYGSNAGHYGY 255
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 6/220 (2%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A I +++ K EIF+G L RD ++++ + E +G +IE+RL +FS
Sbjct: 24 ENGQRRLTAPEIIRGEKQRVKGAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDFSG 83
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F N + A+ A ++ I G R G S DN LF G + KE
Sbjct: 84 S-TRGYAFALFENSKIARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEF 142
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
Q+L +EG+ +I L + L+RGF FV F H A A ++L V+ E
Sbjct: 143 MQELNKI-LEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 201
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 347
V A EP D E+M +V +F+ + + + +IRD
Sbjct: 202 AVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRD 241
>gi|413919105|gb|AFW59037.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
gi|413919106|gb|AFW59038.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
Length = 381
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
++ LARNM AKRKD+GF+ F TH+ AVAC I+N E +G+ K K+RARLS P+ +
Sbjct: 3 KLGLARNMPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQRPP 62
Query: 417 AVKGGMSGGFRIGHGSSR 434
+K G+ G FR+GHG+ R
Sbjct: 63 RMKHGLRGNFRVGHGAPR 80
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 47/245 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + + N+GYAFV F +KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK+ G S N+ LFVG+I + TKE I ++ EG+ ++ L Q
Sbjct: 223 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KSKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + YG++ R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEEM 356
Query: 391 NNKEF 395
N KE
Sbjct: 357 NGKEL 361
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 231
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ + P +N+ R+ + YGDV LAR+ K + +GF++F+TH
Sbjct: 232 FEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFGFVNFTTH 290
Query: 381 EAAVACINAINNKEF 395
EAA ++ +N +F
Sbjct: 291 EAAYKAVDELNGNDF 305
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 6/220 (2%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A I +++ K EIF+G L RD ++++ + E +G +IE+RL +FS
Sbjct: 35 ENGQRRLTAPEIIRGEKQRVKGAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDFSG 94
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F N + A+ A ++ I G R G S DN LF G + KE
Sbjct: 95 S-TRGYAFALFENSKIARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEF 153
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
Q+L +EG+ +I L + L+RGF FV F H A A ++L V+ E
Sbjct: 154 MQELNKI-LEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 212
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 347
V A EP D E+M +V +F+ + + + +IRD
Sbjct: 213 AVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRD 252
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
N+GYAFV F NK AK A+ ++ N I G+ G S DN LFVG I T +E I
Sbjct: 5 NRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILT 64
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERT 308
+++ +GV ++ + + +RGFAFV + H AMA K L ++GH
Sbjct: 65 EMRKV-TDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---A 120
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMST 366
+ V +AEP E D + MA VK +++ + E I + G V R+
Sbjct: 121 IAVDWAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERV-------- 172
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
K +DY F+ F+ E A+ +NA+N K DG+ + L+ P+ K V+
Sbjct: 173 KKIRDYAFVHFTQREDAINAMNALNGK-VVDGSP---IEVTLAKPVDKDSYVR 221
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 174
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 227
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 228 QSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNF 287
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + A+N E
Sbjct: 288 SDHEAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 225 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGF 284
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F++ E A A+ + + G++
Sbjct: 285 VNFSDHEAASAAVEALNEYELKGQKL 310
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 174
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 227
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 228 QSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNF 287
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + A+N E
Sbjct: 288 SDHEAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 225 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGF 284
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F++ E A A+ + + G++
Sbjct: 285 VNFSDHEAASAAVEALNEYELKGQKL 310
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 135
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 136 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 190
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 191 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 243
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 244 QSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNF 303
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + A+N E
Sbjct: 304 SDHEAASAAVEALNEYEL 321
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 241 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGF 300
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F++ E A A+ + + G++
Sbjct: 301 VNFSDHEAASAAVEALNEYELKGQKL 326
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 49/292 (16%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FER G++ E RL F T N+GYAFV + NKE A+RA+
Sbjct: 77 EVFVGKIPRDMYEDELVPLFERAGKLYEFRLMMEF-TGENRGYAFVMYTNKEAAQRAIQM 135
Query: 212 MKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N V GK G S DN LF+G+I TK+ + ++K +GV ++ +
Sbjct: 136 LDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKL-TDGVVDVIMYPSSTD 194
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRL----------QKPDVVFGHPE-------------- 306
+ +RGFAFV + H A A ++L + +VF
Sbjct: 195 KSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSSG 254
Query: 307 ------------RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY-- 352
++++V +A+P ++ + E+M V+ +++ + + E + +
Sbjct: 255 RGCTTGTFQLWGQSIQVDWAQPEKDVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSHFKP 314
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
G V R+ K DY F+ + E A+A ++ +N +V L
Sbjct: 315 GSVERV--------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAAVEVML 358
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 174
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 227
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 228 QSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNF 287
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + A+N E
Sbjct: 288 SDHEAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 225 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGF 284
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F++ E A A+ + + G++
Sbjct: 285 VNFSDHEAASAAVEALNEYELKGQKL 310
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 180
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 181 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 238
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ RD +GDV LAR+ K + +GF++
Sbjct: 239 ------EMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQE-GKSRGFGFVN 291
Query: 377 FSTHEAAVACINAINNKEF 395
F+THEAA ++ +N K+F
Sbjct: 292 FTTHEAAAKAVDDLNGKDF 310
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 132/309 (42%), Gaps = 70/309 (22%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F G + +D ++++ +FE G + ++RL + + N+GYAFV F +E +RA+ E
Sbjct: 166 EVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAVQE 225
Query: 212 --MKNPVICGKR-----------------------------------CGTAP-------- 226
+ P+ G + C P
Sbjct: 226 HVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEIKP 285
Query: 227 --------SEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 276
S N LFVGNI + KE I L+++G G+ + + S + +RG
Sbjct: 286 GKTLRIKISVPNLRLFVGNIPKSKGKEEI---LEEFGKLTAGLVEVIIYSSPDDKKKNRG 342
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 335
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 343 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 399
Query: 336 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ E ++++ + YG+V R+ K KDY F+ F + AV + I+ KE
Sbjct: 400 LTQEITEEALKEEFERYGNVERV--------KKIKDYAFVHFEDRDCAVKAMQEIDGKEL 451
Query: 396 SDGNSKVKL 404
+V L
Sbjct: 452 GGARLEVSL 460
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 174
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 227
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 228 QSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNF 287
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + +N E
Sbjct: 288 SDHEAASAAVEGLNEYEL 305
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 225 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGF 284
Query: 197 VKFANKEHAKRAL 209
V F++ E A A+
Sbjct: 285 VNFSDHEAASAAV 297
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 174
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 227
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ +++ V + + R + YG++ L+R+ T K + +GF++F
Sbjct: 228 QSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNF 287
Query: 378 STHEAAVACINAINNKEF 395
S HEAA A + A+N E
Sbjct: 288 SDHEAASAAVEALNEYEL 305
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ GE+ L ++ T +++G+ F
Sbjct: 225 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGF 284
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F++ E A A+ + + G++
Sbjct: 285 VNFSDHEAASAAVEALNEYELKGQKL 310
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G + ++
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
G SRGFAFV +S A AA K L V GH ER KV
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVE--- 222
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A V++ V + + D +K +G I + L+R+ K +GF+
Sbjct: 223 -------ELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EQGVSKGFGFV 274
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ HE+A ++ +N KE +
Sbjct: 275 NYENHESAKQAVDELNEKEIN 295
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/290 (17%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD+ + + F G+++ ++ + +++G+AFV ++
Sbjct: 126 RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYS 184
Query: 201 NKEHAKRALTEMKNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A A+ + ++ GK+ + E+ +++ N+ T
Sbjct: 185 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 244
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV------ 300
+ +K +G I++ +G+S+GF FV + H A A L + ++
Sbjct: 245 FEDLVKPFG----PTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLY 300
Query: 301 ---VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
ER ++ + + + E + +++ + W ++++R + + +G +
Sbjct: 301 AGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITS 360
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ S R +GF+ +S+ + A ++ +N K V L R
Sbjct: 361 SKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 409
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 20/146 (13%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP--------ADEAETLEDERRELNAIAKDR 145
D+ G + +G V+Y H+ + A D++ E A A+T + EL +++
Sbjct: 263 DEQGVSKGFG-FVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEK 321
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+I+ E + ++I LD + + +R FE G + ++ ++ + ++G+ FV ++
Sbjct: 322 RIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYS 380
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ + A +A++EM GK GT P
Sbjct: 381 SPDEATKAVSEMN-----GKMIGTKP 401
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 20/242 (8%)
Query: 168 RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP------VICGKR 221
+KV E++ E+ L + + A +F N+E A L + K+ + GK
Sbjct: 37 QKVAEKLDEIYVAGLVAHSDLDERAIEALKEF-NEEGALAVLQQFKDSDYNNHEIRSGKH 95
Query: 222 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281
G S N+ LFVG+I + TKE I ++ EG+ ++ L + +RGF F+
Sbjct: 96 IGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLE 154
Query: 282 FSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 340
+ H A A +RL V V+G+ V V +A+P+ +PDPE+MA VK +F+ +
Sbjct: 155 YEDHKTAAQARRRLMSGKVKVWGN---VVTVEWADPIEDPDPEVMAKVKVLFVRNLANTV 211
Query: 341 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400
E + +G + R+ K KDY FI F + AV + +N K+ N
Sbjct: 212 TEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENI 263
Query: 401 KV 402
++
Sbjct: 264 EI 265
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 107 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 166
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P ED D LFV N+ NT T+E +++ +G
Sbjct: 167 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 224
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 225 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 270
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 124/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 176 CKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 233
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ V P +++ R+ + YG++ LAR+ K + +GF++
Sbjct: 234 ------EMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GKSRGFGFVN 286
Query: 377 FSTHEAAVACINAINNKEF 395
++THE+A ++ +N K+F
Sbjct: 287 YTTHESAYKAVDELNGKDF 305
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 26/242 (10%)
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIK 248
+N+GYAFV + +K AKRA+ E+ N I G+ G S DN LF+G I +E I
Sbjct: 2 KNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEIL 61
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPER 307
+++ EGV ++ + + + +RGFAFV + H A A ++L + ++GH
Sbjct: 62 EEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH--- 117
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMS 365
+ V +AEP + D ++M VK +++ + E+ I+ + G V R+
Sbjct: 118 QIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------- 170
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVK 419
K +DY F+ F + E AV +N +N E +G+ L L+ P+ K Q A K
Sbjct: 171 -KKIRDYAFVHFVSREDAVHAMNNLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAK 225
Query: 420 GG 421
GG
Sbjct: 226 GG 227
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 233
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + P E+ R+ + +GDV LAR+ K + +GF++
Sbjct: 234 ------EMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQE-GKSRGFGFVN 286
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A ++ +N K+F
Sbjct: 287 FTTHESASKAVDDLNGKDF 305
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 172 CKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 229
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + P +++ R+ + +GDV +AR K + +GF++
Sbjct: 230 ------EMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQD-GKSRGFGFVN 282
Query: 377 FSTHEAAVACINAINNKEF 395
F+THEAA + +NNK+
Sbjct: 283 FTTHEAAAKAVEELNNKDL 301
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + + R+ YGD+ + + T K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
HE+A A + +N+KEF
Sbjct: 285 VKHESAAAAVEELNDKEF 302
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ LD + T E+ R++F + G++ + + T +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F E A A+ E+ + G++
Sbjct: 282 VNFVKHESAAAAVEELNDKEFKGQKL 307
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 180
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 238
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ RD +GDV LAR+ K + +GF++
Sbjct: 239 ------EMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQE-GKSRGFGFVN 291
Query: 377 FSTHEAAVACINAINNKEF 395
F+THEAA ++ +N K+F
Sbjct: 292 FTTHEAAAKAVDDLNGKDF 310
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + + R+ + YG++ ++R+ T K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
HE+A A + +N+KE+
Sbjct: 285 VKHESAAAAVEELNDKEY 302
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ LD + + E+ R++FE+ GE+ + ++ T +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F E A A+ E+ + G++
Sbjct: 282 VNFVKHESAAAAVEELNDKEYKGQKL 307
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + + R+ YGD+ + + T K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
HE+A A + +N+KEF
Sbjct: 285 VKHESAAAAVEELNDKEF 302
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ LD T E+ R++F + G++ + + T +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F E A A+ E+ + G++
Sbjct: 282 VNFVKHESAAAAVEELNDKEFKGQKL 307
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G + ++
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
G SRGFAFV +S A AA K L V GH ER KV
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVE--- 220
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A V++ V + + D +K +G I + L+R+ K +GF+
Sbjct: 221 -------ELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFV 272
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ HE+A ++ +N KE +
Sbjct: 273 NYENHESARKAVDELNEKEVN 293
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD+ + + F G+++ ++ + +++G+AFV ++
Sbjct: 124 RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYS 182
Query: 201 NKEHAKRALTEMKNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A A+ + ++ GK+ + E+ +++ N+ T
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 242
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV------ 300
+ +K +G I++ +G+S+GF FV + H A A L + +V
Sbjct: 243 FEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 301 ---VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
ER ++ + + + E + +++ + W ++++R + + +G +
Sbjct: 299 AGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITS 358
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ S R +GF+ +S+ + A ++ +N K V L R
Sbjct: 359 SKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP--------ADEAETLEDERRELNAIAKDR 145
D+ G + +G V+Y H+ A D++ E A A+T + EL +++
Sbjct: 261 DEKGVSKGFG-FVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+++ E + +++ LD + + +R FE G + ++ ++ + ++G+ FV ++
Sbjct: 320 RLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYS 378
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ + A +A++EM GK GT P
Sbjct: 379 SPDEATKAVSEMN-----GKMIGTKP 399
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 125
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 180
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 236
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ + E + R+ YG+V LAR+ K + +GF++FSTH
Sbjct: 237 FEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSRGFGFVNFSTH 295
Query: 381 EAAVACINAINNKEF 395
++A + +N KEF
Sbjct: 296 DSAAKAVEELNGKEF 310
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 16/250 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++IG L + + + ++F +G V +R+ ++ T R+ GYA+V + A+RAL M
Sbjct: 11 LYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALDSM 70
Query: 213 KNPVICGKRCGTAPSEDNDTL---FVGNICNTWTKEAI--KQKLKDYGVEG-VENINLVS 266
I GK C S+ + ++ VGNI E I KQ + + G + + +V+
Sbjct: 71 NFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVT 130
Query: 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA 326
D + GLS+G+ +V + + A +A ++L ++ E V V +R + A
Sbjct: 131 D-KATGLSKGYGYVHYETNEAAASAIEKLD--GMLIDGKEVQVGVF----MRRDNRPGQA 183
Query: 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VF+ +P W E+++R++ +G+G+V+ A+ +GF++F+THEAA A
Sbjct: 184 DWTNVFIKNIPFEWTEDKLREEFEGFGEVVS---AKPKEVQGSLGFGFVNFATHEAAAAA 240
Query: 387 INAINNKEFS 396
+ +N+KEF+
Sbjct: 241 VKEMNDKEFT 250
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 34/268 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ L + + F G ++ ++ + +T +KGY +V + E A A+ ++
Sbjct: 99 IFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKL 158
Query: 213 KNPVICGK--RCGTAPSEDN-------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+I GK + G DN +F+ NI WT++ ++++ + +G
Sbjct: 159 DGMLIDGKEVQVGVFMRRDNRPGQADWTNVFIKNIPFEWTEDKLREEFEGFG-------E 211
Query: 264 LVSDIQHEGL-SRGFAFVMFSCHVDAMAAYKRLQ-KPDVVFGHPERTVKVAF---AEPLR 318
+VS E S GF FV F+ H A AA K + K V E KV F A+
Sbjct: 212 VVSAKPKEVQGSLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKA 271
Query: 319 EPDPEIMAHVKTVFLD------GVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ A + +D GV + K ++ +RD+ G + + +++
Sbjct: 272 ERERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLK 331
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNK 393
T + +GF+ +ST E A +N +N K
Sbjct: 332 TGISRGFGFVCYSTPEDATRAVNEMNGK 359
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G + ++
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
G SRGFAFV +S A AA K L V GH ER KV
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVE--- 222
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A V++ V + + D +K +G I + L+R+ K +GF+
Sbjct: 223 -------ELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFV 274
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ HE+A ++ +N KE +
Sbjct: 275 NYEHHESARKAVDELNEKEVN 295
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD+ + + F G+++ ++ + +++G+AFV ++
Sbjct: 126 RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYS 184
Query: 201 NKEHAKRALTEMKNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A A+ + ++ GK+ + E+ +++ N+ T
Sbjct: 185 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 244
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV------ 300
+ +K +G I++ +G+S+GF FV + H A A L + +V
Sbjct: 245 FEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLY 300
Query: 301 ---VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
ER ++ + + + E + +++ + W ++++R + + +G +
Sbjct: 301 AGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITS 360
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ S R +GF+ +S+ + A ++ +N K V L R
Sbjct: 361 SKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 409
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP--------ADEAETLEDERRELNAIAKDR 145
D+ G + +G V+Y H+ A D++ E A A+T + EL +++
Sbjct: 263 DEKGVSKGFG-FVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 321
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+++ E + ++I LD + + +R FE G + ++ ++ + ++G+ FV ++
Sbjct: 322 RLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYS 380
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ + A +A++EM GK GT P
Sbjct: 381 SPDEATKAVSEMN-----GKMIGTKP 401
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 231
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ + P +++ R+ + +GDV LAR+ K + +GF++F+TH
Sbjct: 232 FEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE-GKPRGFGFVNFTTH 290
Query: 381 EAAVACINAINNKEF 395
EAA + +N K+F
Sbjct: 291 EAAFKAVEDLNGKDF 305
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 231
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ + P + R + +GDV LAR+ K + +GF++F+TH
Sbjct: 232 FEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFGFVNFTTH 290
Query: 381 EAAVACINAINNKEF 395
EAA + +N K+F
Sbjct: 291 EAAFKAVEELNGKDF 305
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 178
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 179 CKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFE-- 236
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ +P ++Q R+ + +GDV LAR+ K + +GF++
Sbjct: 237 ------EMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARD-EAGKNRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F HE A A ++ +N K+F
Sbjct: 290 FINHEHASAAVDELNGKDF 308
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ + DAT + R++FE+ G+V L ++ +N+G+ F
Sbjct: 229 KDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARD-EAGKNRGFGF 287
Query: 197 VKFANKEHAKRALTEM 212
V F N EHA A+ E+
Sbjct: 288 VNFINHEHASAAVDEL 303
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL E+
Sbjct: 53 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEEL 112
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 113 NYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFG-----NILS 167
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 168 CKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFD-- 225
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + P +++ R + +G + LAR+ + + +GF++
Sbjct: 226 ------EMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVN 279
Query: 377 FSTHEAAVACINAINNKEF 395
FS+HEAA A ++A++ E
Sbjct: 280 FSSHEAAAAAVDALHETEL 298
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ T+ + ++F IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 178 CKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 235
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + +++ RD YG+V LAR+ K + +GF++
Sbjct: 236 ------EMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQE-GKSRGFGFVN 288
Query: 377 FSTHEAAVACINAINNKEF 395
F+THEAA + +N K+F
Sbjct: 289 FTTHEAASQAVEELNGKDF 307
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 165
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L V GH ++ + F
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 223
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + E + R+ + +G++ L+R+ K + +GF++
Sbjct: 224 ------EMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVN 276
Query: 377 FSTHEAAVACINAINNKEF 395
FSTHE+A A ++ +N KE
Sbjct: 277 FSTHESAQAAVDEMNEKEI 295
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 139/300 (46%), Gaps = 27/300 (9%)
Query: 113 EEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHE-----IFIGGLDRDATQEDV 167
E++ A E AD A++ E E KD K K++E +++G LD T+ D+
Sbjct: 23 EKKEAASPASEKADGAKSEEAEN------GKDTKDSKDNEQTFASLYVGDLDPSVTESDL 76
Query: 168 RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227
++F ++G+V +R+ +B T ++ YA+V + +E A+ AL + I GK+C S
Sbjct: 77 YEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWS 136
Query: 228 EDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 279
+ + ++ F+ N+ + + +G + + + +D G S+GF F
Sbjct: 137 QRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFG--KILSCKIATD--EHGHSKGFGF 192
Query: 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPP 338
V + A AA + + ++ + E V RE E++ + V++ P
Sbjct: 193 VHYDDAESAKAAIENVN--GMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGP 250
Query: 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398
E+Q+R+ + YG V L + + K + +GF++F H A ++A+N KE G
Sbjct: 251 EMTEDQLREMFEAYGKVTSTYLPTD-NEGKARGFGFVNFEDHXEAAKAVDALNEKELEGG 309
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL ++
Sbjct: 116 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEDL 175
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 176 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 230
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 231 CKVAQDENGNSKGYGFVHYETDEAAANAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 286
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ +P + + R+ YGDV LAR+ K + +GF++F+TH
Sbjct: 287 FEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARS-DEGKSRGFGFVNFTTH 345
Query: 381 EAAVACINAINNKEF 395
EAA + +N K+F
Sbjct: 346 EAASKAVEELNGKDF 360
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQV-- 302
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 303 --------------------KVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 337
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 338 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 373
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 12/264 (4%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A + +++ K EIF+G L RD ++++ + E++G ++E+RL +FS
Sbjct: 39 ENGQRRLTAPEIVRGEKQRVKGAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLDFSG 98
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF F + + A+ A ++ V G R G S DN LF G + +KE
Sbjct: 99 S-TRGYAFALFEDSKTARNACAKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEF 157
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
+L +EG+ +I L + L+RGF FV F H A A ++L V+ E
Sbjct: 158 MTELNKI-LEGITDIYLYPSAHDKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEI 216
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
V A EP D ++M +V +F+ + ++ +IR+ + + + L
Sbjct: 217 AVDWADPEPGDPIDEDVMENVTALFVRNLSLDVQQQKIREIFQKSTKIPILKL------K 270
Query: 368 KRKDYGFIDFSTHEAAVACINAIN 391
K + FI + + +AA A ++ +
Sbjct: 271 KINHFAFIHYESRQAAQAVMDIMT 294
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQV-- 302
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 303 --------------------KVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 337
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 338 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 373
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 21/266 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N A+RAL ++
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I K C S+ + +L F+ N+ T +A+ +G + ++
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG----DILSC 174
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-- 322
+ G S+G+ FV + A AA K + + ++ V V P RE
Sbjct: 175 KVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLN----DKVVFVGIHVPRRERQAKI 230
Query: 323 -EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ AH +++ +P ++ + YG V + + S K + +GF+++ HE
Sbjct: 231 DEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADES-GKHRGFGFVNYENHE 289
Query: 382 AAVACINAINNKEFSDGNSKVKLRAR 407
+A + A+++K++ GN RA+
Sbjct: 290 SASKAVEALHDKDY-KGNILYVARAQ 314
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 39/294 (13%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD + + F G+++ ++ + ST +KGY FV +
Sbjct: 135 RDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYV 193
Query: 201 NKEHAKRAL-----TEMKNPVI-----CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A+ A+ ++ + V+ +R A ++ L++ N+ T E
Sbjct: 194 TAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEE 253
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306
+ + YG V + + +D G RGF FV + H A A + L D +
Sbjct: 254 LNEMFSKYGP--VTSAAVQAD--ESGKHRGFGFVNYENHESASKAVEALHDKD----YKG 305
Query: 307 RTVKVAFAEPLREPDPEIM-AHVK------------TVFLDGVPPHWKENQIRDQIKGYG 353
+ VA A+ E D E+ AH + +++ + + + +++ + +G
Sbjct: 306 NILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFG 365
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ + ++ R +GF+ FS + A + +N K V L R
Sbjct: 366 TITSCKVMKDDKGVSR-GFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQR 418
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQV-- 302
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 303 --------------------KVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 337
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 338 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 373
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQV-- 302
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 303 --------------------KVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 337
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 338 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 373
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|414870190|tpg|DAA48747.1| TPA: hypothetical protein ZEAMMB73_016759 [Zea mays]
Length = 518
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
+ VK VFLDGVPPHW E+++R+ +G++ I LARNM TA RKD+GFI F+ ++ +
Sbjct: 140 LYMVKYVFLDGVPPHWDEDKVREIFGKFGEIDIIQLARNMFTAARKDFGFIGFTARQSTL 199
Query: 385 ACINAINNKEFSDGNSKVKLRARLSNP 411
CI +N +G+ KV +++ L P
Sbjct: 200 DCIKMVNKDGVGEGSGKVPIKSSLQRP 226
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 13/246 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EI++G + D ++ + +F G+V ++RL + T ++GYAFV + NKE A A +
Sbjct: 210 EIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKEDAAAAAKK 269
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ GK S N LF+GNI T +K+ I ++LK + EGV ++ + S +
Sbjct: 270 FDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPDN 328
Query: 271 EGL-SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E + +RGF FV F H A +++ + + + + V V +AE EPD + M+ VK
Sbjct: 329 EKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQDEPDADTMSKVK 386
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E ++ + K Y + R+ K KDY FI F+ + V +
Sbjct: 387 VLYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCVKAMEE 438
Query: 390 INNKEF 395
N K+
Sbjct: 439 WNGKDL 444
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 165
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 223
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + E + R+ + +G++ L+R+ K + +GF
Sbjct: 224 --------EMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGF 274
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTHE+A A ++ +N KE
Sbjct: 275 VNFSTHESAQAAVDEMNEKEI 295
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 279 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 301
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 302 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 353
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 354 NGKDLEGENIEI 365
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +
Sbjct: 242 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQV-- 299
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 300 --------------------KVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 334
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 335 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 370
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 49 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 108
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 109 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 163
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 164 CKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE-- 221
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ RD + +GD+ +AR+ K + +GF++
Sbjct: 222 ------EMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFGFVN 274
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA + +N+ EF
Sbjct: 275 YIKHEAASVAVETLNDTEF 293
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE-- 222
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + ++ RD + +GD+ +AR+ K + +GF++
Sbjct: 223 ------EMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA A ++A+N+ +F
Sbjct: 276 YIKHEAASAAVDALNDTDF 294
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L + V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + + R+ + YG++ ++R+ T K + +GF F
Sbjct: 225 QSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYF 284
Query: 378 STHEAAVACINAINNKEF 395
HE+A A + +N+KE+
Sbjct: 285 LKHESAAAAVEELNDKEY 302
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ LD + + E+ R++FE+ GE+ + ++ T +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
F E A A+ E+ + G++
Sbjct: 282 FYFLKHESAAAAVEELNDKEYKGQKL 307
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 228
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + +++ R + +G++ L+R+ K + +GF
Sbjct: 229 --------EMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 279
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTHE+A A + +N+KE
Sbjct: 280 VNFSTHESAQAAVEEMNDKEI 300
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 12/264 (4%)
Query: 132 EDERRELNA---IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
E+ +R L A + R+ K EIF+G L RD ++++ + E++G ++E+RL +FS
Sbjct: 22 ENGQRRLTAPEVVRGQRQRGKGAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDFSG 81
Query: 189 NRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAI 247
+ +GYAF + + A+ A + + + G R G S DN LF G + TK
Sbjct: 82 S-TRGYAFALYEDPRIAREACERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEF 140
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307
++L ++G+ +I + + Q+ L+RGF FV F H A A ++L V+ E
Sbjct: 141 LEELTKI-LDGIVDIYVYPNAQNRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEI 199
Query: 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
V A EP D +IM V +F+ + + ++++ I + +V + L
Sbjct: 200 AVDWADPEPGDPVDEDIMETVTALFVRNLSIDMPQQKVKEIIYRHTNVPILKL------K 253
Query: 368 KRKDYGFIDFSTHEAAVACINAIN 391
K + FI + + EAA ++ +
Sbjct: 254 KINHFAFIHYESREAAQTVMDIMQ 277
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 168
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L V GH ++ + F
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 226
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + +++ R + +G++ L+R+ K + +GF++
Sbjct: 227 ------EMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVN 279
Query: 377 FSTHEAAVACINAINNKEF 395
FSTHE+A A + +N+KE
Sbjct: 280 FSTHESAQAAVEEMNDKEI 298
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 279 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 301
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 302 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 353
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 354 NGKDLEGENIEI 365
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + + ++AL E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEEL 125
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 180
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSK 236
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ V++ + E + R+ YG+V LAR+ + K + +GF++F+TH
Sbjct: 237 FEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARD-NEGKSRGFGFVNFTTH 295
Query: 381 EAAVACINAINNKEF 395
+A + +N KEF
Sbjct: 296 ASAAKAVEELNGKEF 310
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 122/256 (47%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD+ T + +F ++G+V+ VR+ ++ ST R+ GY +V ++N++ A RA+
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 210 --TEMKNPVI---CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
T + N I +R T +F+ N+ + +A+ + +G + + +
Sbjct: 102 NFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGT--IISCKI 159
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+G+ FV + A A +L G +V LR+ D +
Sbjct: 160 ATD--ASGQSKGYGFVQYDSEEAAQTAIDKLN------GMLMNDKQVYVGVFLRKQDRDS 211
Query: 325 -MAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
M+ K +++ + E+ +R YG + +V+ R+ + K K +GF++F E
Sbjct: 212 EMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRD-ADGKSKCFGFVNFENPE 270
Query: 382 AAVACINAINNKEFSD 397
A ++A+N K+F D
Sbjct: 271 DAAKAVDALNGKKFDD 286
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 123/278 (44%), Gaps = 31/278 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + + F G +I ++ + ++ ++KGY FV++ ++E A+ A+ ++
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATD-ASGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 213 KNPVICGKRCGTAP---SEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ K+ +D D+ ++V N+ ++ +++ +++ +YG +
Sbjct: 189 NGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT--IT 246
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERT------V 309
++ ++ D +G S+ F FV F DA A K+ + G ++ +
Sbjct: 247 SVVVMRD--ADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVEL 304
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
K F + ++E + +++ + + ++++ YG + + R+ S R
Sbjct: 305 KSRFEQTVKEQVDKYQGV--NLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISR 362
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
GF+ FST E A + +N K V L R
Sbjct: 363 GS-GFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQR 399
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 228
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + +++ R + +G++ L+R+ K + +GF
Sbjct: 229 --------EMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 279
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTHE+A A + +N+KE
Sbjct: 280 VNFSTHESAQAAVEEMNDKEI 300
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 235
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ R+ + YGD+ LAR+ K + +GF++
Sbjct: 236 ------EMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFGFVN 288
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A + ++ K+F
Sbjct: 289 FTTHESAAKAVEELHGKDF 307
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 121/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + + ++AL E+
Sbjct: 59 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEEL 118
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 119 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-----NILS 173
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 174 CKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFE-- 231
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + +++ R+ + YG + LA + T K + +GF++
Sbjct: 232 ------EMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVN 285
Query: 377 FSTHEAAVACINAINNKEF 395
F HE+A ++ +N+K++
Sbjct: 286 FVKHESAAKAVDELNDKDW 304
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE-- 222
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + + + R+ + +GD+ +AR+ K + +GF++
Sbjct: 223 ------EMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA A ++A+N+ +F
Sbjct: 276 YIKHEAASAAVDALNDTDF 294
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 213 KNPVICGKRCGTAPSEDNDTL---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + L GNI AI K NI Q
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 181
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEPLREPD 321
E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE------- 234
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ A+ V++ + + + R+ +G+V LAR+ K + +GF++F+THE
Sbjct: 235 -EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHE 292
Query: 382 AAVACINAINNKEF 395
AA ++ +N K+F
Sbjct: 293 AAAQAVDELNGKDF 306
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 47/245 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + ++ N+GYAF+ F +KE A+ A+
Sbjct: 163 EIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALEEM 356
Query: 391 NNKEF 395
N KE
Sbjct: 357 NGKEL 361
>gi|242047590|ref|XP_002461541.1| hypothetical protein SORBIDRAFT_02g004455 [Sorghum bicolor]
gi|241924918|gb|EER98062.1| hypothetical protein SORBIDRAFT_02g004455 [Sorghum bicolor]
Length = 306
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%)
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
K+ E+F+GGL RDATQEDVR GE+ EVR+ ++ +T +NKGY FV + + A +
Sbjct: 222 KRMREVFVGGLGRDATQEDVRAALSAAGEITEVRIIRDRTTGKNKGYCFVAYRDAAMASK 281
Query: 208 ALTEMKNPVICGKRCGTAPSEDND 231
A+ E N ICGK C A E N+
Sbjct: 282 AVAEFGNVKICGKACRVALPEGNE 305
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 61 LYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 120
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G NI
Sbjct: 121 NYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFG-----NILS 175
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 176 CKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEE- 234
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ + +++ R + YG V +AR+ T K + +GFI+
Sbjct: 235 -------MKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFIN 287
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A + +N++E
Sbjct: 288 FTTHESAAKAVEELNSREI 306
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I+I L D T ++ RK+FE+ G V + ++ T +++G+ F
Sbjct: 226 KDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGF 285
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
+ F E A +A+ E+ + I G+
Sbjct: 286 INFTTHESAAKAVEELNSREIHGQEL 311
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 176
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 177 CKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 234
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ R+ + YGD+ LAR+ K + +GF++
Sbjct: 235 ------EMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFGFVN 287
Query: 377 FSTHEAAVACINAINNKEF 395
F+THE+A + ++ K+F
Sbjct: 288 FTTHESAAKAVEELHGKDF 306
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE-- 222
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + + + R+ + +GD+ +AR+ K + +GF++
Sbjct: 223 ------EMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA A ++A+N+ +F
Sbjct: 276 YIKHEAASAAVDALNDTDF 294
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 178 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE-- 235
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + ++ R + +G V LAR+ T K + +GF++
Sbjct: 236 ------EMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F++HE A + +N KEF
Sbjct: 290 FTSHEDASKAVEELNEKEF 308
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 16/252 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ D+ + F IG V +R+ ++ T R+ GY +V F ++ +RAL E+
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G RC S+ + +L F+ N+ + + +G V + +
Sbjct: 114 NYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG--KVLSCKV 171
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PE 323
+D G S+GF FV + A AA + + ++ E V A+ RE E
Sbjct: 172 ATD--ENGNSKGFGFVHYESDEAAQAAIENIN--GMLLNGREIYVGPHLAKKDRESRFQE 227
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
++ + VF+ E+++R+ + YG + I L + S K +GF++F+ H+ A
Sbjct: 228 MIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVD-SEGHNKGFGFVNFAEHDDA 286
Query: 384 VACINAINNKEF 395
V + A+N+KE+
Sbjct: 287 VKAVEALNDKEY 298
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 33/194 (17%)
Query: 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAK 206
IK +F+ D ++T++++R++FE G + + L + S NKG+ FV FA + A
Sbjct: 229 IKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVD-SEGHNKGFGFVNFAEHDDAV 287
Query: 207 RALTEMKN------PVICGK------------------RCGTAPSEDNDTLFVGNICNTW 242
+A+ + + P+ G+ R + LF+ N+ +
Sbjct: 288 KAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESI 347
Query: 243 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
++++ K +G + L G SRGF FV S +A A + + V
Sbjct: 348 DDARLEEEFKPFGTITSAKVML----DENGKSRGFGFVCLSTPEEATKAISEMNQRMVA- 402
Query: 303 GHPERTVKVAFAEP 316
+ + VA A+P
Sbjct: 403 ---NKPLYVALAQP 413
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +G V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ + +A+ +G + + +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFG--NILSCKV 176
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G SRGFAFV + A AA K L V GH ER KV
Sbjct: 177 ATD--ENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVE--- 231
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E A +F+ + P + + + D K +G+++ L+ K + F+
Sbjct: 232 -------EQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFV 283
Query: 376 DFSTHEAAVACINAINNKEFS 396
+++TH+AA ++ +N+KE +
Sbjct: 284 NYTTHDAAKKAVDELNDKEIN 304
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 143 KDRKIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
K+R+ K E + IFI L+ + TQ+D+ +F+ GE++ L +KG+AF
Sbjct: 224 KERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAF 282
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSE------------------DNDT------ 232
V + + AK+A+ E+ + I GK+ ++ +N++
Sbjct: 283 VNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVN 342
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
L+V NI + W + ++ + G + + ++ D +G SRGF FV FS +A A
Sbjct: 343 LYVKNIDDEWDDDRLRSEFDFAGT--ITSAKVMRD--DKGASRGFGFVCFSQPDEATRAV 398
Query: 293 KRL 295
+ +
Sbjct: 399 QEM 401
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 113/269 (42%), Gaps = 39/269 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + + N ++G+AFV + E A A+ +
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGN-SRGFAFVHYETGEAADAAIKSV 205
Query: 213 KNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ + E+ +F+ N+ +T++ ++ K +G
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFG--- 262
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
E ++ + +GLS+GFAFV ++ H A A L ++ + + V A+
Sbjct: 263 -EIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEIN----GKKLYVGRAQKRA 317
Query: 319 EPDPEI--------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
E D E+ A V +++ + W ++++R + G + + R+
Sbjct: 318 ERDEELRRMHEERRLENESKTAGV-NLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDD 376
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNK 393
A R +GF+ FS + A + +N K
Sbjct: 377 KGASR-GFGFVCFSQPDEATRAVQEMNGK 404
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 113 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 167
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 168 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD-- 225
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + P E + R + +G++ L+R+ K + +GF
Sbjct: 226 --------EMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRD-PEGKSRGFGF 276
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++STHE+A A ++ +++KE
Sbjct: 277 VNYSTHESAQAAVDEMHDKEV 297
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +G V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ + +A+ +G + + +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFG--NILSCKV 176
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G SRGFAFV + A AA K L V GH ER KV
Sbjct: 177 ATD--ENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVE--- 231
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E A +F+ + P + + + D K +G+++ L+ K + F+
Sbjct: 232 -------EQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFV 283
Query: 376 DFSTHEAAVACINAINNKEFS 396
+++TH+AA ++ +N+KE +
Sbjct: 284 NYTTHDAAKKAVDELNDKEIN 304
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 143 KDRKIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
K+R+ K E + IFI L+ + TQ+D+ +F+ GE++ L +KG+AF
Sbjct: 224 KERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAF 282
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSE------------------DNDT------ 232
V + + AK+A+ E+ + I GK+ ++ +N++
Sbjct: 283 VNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVN 342
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
L+V NI + W + ++ + G + + ++ D +G SRGF FV FS +A A
Sbjct: 343 LYVKNIDDEWDDDRLRSEFDFAGT--ITSAKVMRD--DKGASRGFGFVCFSQPDEATRAV 398
Query: 293 KRL 295
+ +
Sbjct: 399 QEM 401
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 113/269 (42%), Gaps = 39/269 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + + N ++G+AFV + E A A+ +
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGN-SRGFAFVHYETGEAADAAIKSV 205
Query: 213 KNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ + E+ +F+ N+ +T++ ++ K +G
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFG--- 262
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
E ++ + +GLS+GFAFV ++ H A A L ++ + + V A+
Sbjct: 263 -EIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEIN----GKKLYVGRAQKRA 317
Query: 319 EPDPEI--------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364
E D E+ A V +++ + W ++++R + G + + R+
Sbjct: 318 ERDEELRRMHEERRLENESKTAGV-NLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDD 376
Query: 365 STAKRKDYGFIDFSTHEAAVACINAINNK 393
A R +GF+ FS + A + +N K
Sbjct: 377 KGASR-GFGFVCFSQPDEATRAVQEMNGK 404
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 213 KNPVICGKRCGTAPSEDNDTL---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + L GNI AI K NI Q
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 181
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEPLREPD 321
E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE------- 234
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ A+ V++ + + + R+ +G+V LAR+ K + +GF++F+THE
Sbjct: 235 -EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKTRGFGFVNFTTHE 292
Query: 382 AAVACINAINNKEF 395
AA ++ +N K+F
Sbjct: 293 AAAQAVDELNGKDF 306
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 200 ANKEHAKRALTEMKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
KE A+ A+ + IC GK G S N+ LFVG+I TKE I ++ EG
Sbjct: 18 CGKEAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEG 76
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPL 317
+ ++ L + +RGF F+ + H A A +RL V V+G+ V V +A+P+
Sbjct: 77 LVDVILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPV 133
Query: 318 REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
EPDPE+MA VK +F+ + E + +G + R+ K KDY F+ F
Sbjct: 134 EEPDPEVMAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERV--------KKLKDYAFVHF 185
Query: 378 STHEAAVACINAINNK 393
AAV ++ +N K
Sbjct: 186 EDRGAAVKAMDEMNGK 201
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + L GNI AI K NI Q
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 182
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEPLREPD 321
E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 183 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE------- 235
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ A+ V++ + +++ R+ + +G+V LAR+ K + +GF++F+THE
Sbjct: 236 -EMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQE-GKTRGFGFVNFTTHE 293
Query: 382 AAVACINAINNKEF 395
AA ++ +N K+F
Sbjct: 294 AAAKAVDDLNGKDF 307
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 123/254 (48%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 70 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEEL 129
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G + + +
Sbjct: 130 NYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 187
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-- 322
+D G S+G+ FV + A A K + ++ E+ V V + P ++
Sbjct: 188 ATD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLN--EKKVYVGYHIPKKDRQSKF 241
Query: 323 -EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ A+ V++ + E + R+ +G++ LAR+ + K + +GF+++STH
Sbjct: 242 EEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARD-AEGKPRGFGFVNYSTHA 300
Query: 382 AAVACINAINNKEF 395
+A C+ +N KE+
Sbjct: 301 SAAKCVEEMNGKEW 314
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKA 230
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFE-- 222
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + + RD + +GD+ +AR+ K + +GF++
Sbjct: 223 ------EMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARD-DQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA A ++A+N+ +F
Sbjct: 276 YIKHEAASAAVDALNDTDF 294
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKA 230
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKA 230
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVA-EGLVDVILYHQPDDKKKNRGFC 132
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 189
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 190 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+E + + D +AFV F A+ A
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKA 230
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +R F F+ + H A A VK
Sbjct: 282 KKKNRSFCFLEYEDHKTA-------------------------------------AQVKV 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + +RAL E+
Sbjct: 58 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 117
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 118 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-----NILS 172
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A +A K L + V GH P++ F
Sbjct: 173 CKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFE-- 230
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + P +++ R + YGD+ LA + K + +GF++
Sbjct: 231 ------EMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE-GKSRGFGFVN 283
Query: 377 FSTHEAAVACINAINNKEF 395
+ HE A + +NN +F
Sbjct: 284 YIRHEDANKAVEELNNSDF 302
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 68
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 69 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 125
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 126 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 173
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 24 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 83
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 84 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 141
Query: 258 GVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 142 KLERVKKLKD---------YAFVHF 157
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 158 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 216
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 217 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 273
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 274 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 321
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 170 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 229
Query: 209 LTE-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYG 255
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 230 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 289
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 290 --KLERVKKLKD---------YAFVHF 305
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 222
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + E + R + +G++ L+R+ K + +GF
Sbjct: 223 --------EMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGF 273
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++STH++A A ++ +N+KE
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEV 294
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 119/277 (42%), Gaps = 47/277 (16%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDEL--VFERAGKIHEFRLMMEFS-GENRGYAFVTYTTKEEAQLAIRI 118
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 119 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKV-TEGVVDVIVYPSATD 177
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGFAFV + H A K L +++ E T+K F
Sbjct: 178 KTKNRGFAFVKYESHRAAAMRVKVLFVRNLMISTTEETIKAEF----------------- 220
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
N+ + G V R+ K +DY F+ F E AVA ++ I
Sbjct: 221 ------------NKFKP-----GAVERV--------KKLRDYAFVHFFNREDAVAAMSVI 255
Query: 391 NNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFR 427
+ K + +V L S P A + GG R
Sbjct: 256 SGKCIDGASIEVTLAKPHSWPTNVVLAEQSRGLGGLR 292
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 209 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 267
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 268 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 324
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 325 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 372
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGE-VIEVRL-HKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + ++ T+E++ + F ++ E +++V L H+ +N+G+ F+++ + + A +A
Sbjct: 223 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 282
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V T P E+ D LFV N+ T T+E +++ ++G
Sbjct: 283 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 340
Query: 258 GVENINLVSDIQHEGLSRGFAFVMF 282
+E + + D +AFV F
Sbjct: 341 KLERVKKLKD---------YAFVHF 356
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A +
Sbjct: 282 KKKNRGFCFLEYEDHKTA-------------------------------------AQARL 304
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY FI F + AV + +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEM 356
Query: 391 NNKEFSDGNSKV 402
N K+ N ++
Sbjct: 357 NGKDLEGENIEI 368
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 39/166 (23%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA-- 302
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
LFV N+ NT T+E +++ +G +E + + D
Sbjct: 303 --------------------RLLFVRNLANTVTEEILEKAFSQFG--KLERVKKLKD--- 337
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+AF+ F A+ A + + D+ +++ FA+P
Sbjct: 338 ------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 373
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 32/274 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D + + ++F ++G V +R+ ++ T R+ GYA+V F N A+RAL M
Sbjct: 44 LYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTM 103
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I + C S+ + +L FV N+ T +A+ +G + + +
Sbjct: 104 NFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFG--NILSCKV 161
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+G+ +V + V A A ++ G +V +R +
Sbjct: 162 ATD--DAGESKGYGYVHYEGGVSANMAIAKIN------GMLIAGKQVHVGHFVRRDNRAG 213
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDV--IRIVLA------------RNMSTAKRK 370
A +++ G+P W + ++R++ + +G V ++ +A K +
Sbjct: 214 QADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSR 273
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404
+GF++F HE+AV I A+NN E DG L
Sbjct: 274 GFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTL 307
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 37/314 (11%)
Query: 130 TLEDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
T++D+ + +D +++ IF+ LD + + F G ++ ++ +
Sbjct: 107 TIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATD-D 165
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC---------GTAPSEDNDTLFVGNI 238
+KGY +V + A A+ ++ +I GK+ A D L+V +
Sbjct: 166 AGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNRAGQADWTNLYVKGL 225
Query: 239 CNTWTKEAIKQKLKDYGV-----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
++W ++++ + +G EG + + EG SRGF FV F H
Sbjct: 226 PSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHES 285
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMA---HVKT----------VFLD 334
A+ A + L ++ G T+ A A+ E E+ + VK V++
Sbjct: 286 AVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVYVK 345
Query: 335 GVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ E+ +R+ YG + V+ N + + K +GF+ FS E A I +N K
Sbjct: 346 NLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGK 405
Query: 394 EFSDGNSKVKLRAR 407
+ V L R
Sbjct: 406 MLLNKPIYVALAQR 419
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQ 249
++KGY FV+F KE A +A+ E ++ GK+ G PS D TLF GN+ W+ +
Sbjct: 8 KSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDWSPDEF-D 66
Query: 250 KLKDYGVEGVENINLV-------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
K+ + V +++L + + + +RGFAFV FS H A A++ K D +
Sbjct: 67 KMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGSKSDFLL 126
Query: 303 GHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
G V EP E DPE +A + F+ +P E+ ++ +G V +++L++
Sbjct: 127 GDSWHPVVEWAEEP--EIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKVLLSK 184
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK---VKLRARLSNPM 412
+ GF+ F+ I +N K G S+ KL+ ++ P+
Sbjct: 185 K----GQSPVGFVHFAKRSDLDNAIKEMNEKTV-QGPSRGPAFKLQVAVAKPL 232
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 168
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 226
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + + + R + +G++ L+R+ K + +GF
Sbjct: 227 --------EMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 277
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTH++A A ++ +N+KE
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEI 298
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 168
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 226
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + + + R + +G++ L+R+ K + +GF
Sbjct: 227 --------EMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 277
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTH++A A ++ +N+KE
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEI 298
>gi|222612494|gb|EEE50626.1| hypothetical protein OsJ_30830 [Oryza sativa Japonica Group]
Length = 653
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 219 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 267
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 268 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 327
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YG++ ++ + R +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 328 YGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 381
Query: 412 MPKTQAVKGGMSGGFRIGHGSS 433
K Q GGF + G++
Sbjct: 382 QSKVQLANESSKGGFNVHSGAT 403
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 29/179 (16%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+GGL +D +ED+R VF + GEV +R+ K + K AFV++A+ K+A
Sbjct: 215 KTLELFVGGLPKDCVEEDIRVVFSQCGEVESIRIVK-----KRKRIAFVRYADISATKKA 269
Query: 209 LTEMKNPV-ICGKRCGTAPSEDN------------DTLFVGNICNTWTKEAIKQKLKDYG 255
LTE K+ + + GK + +E + T+++ + +W + I++ + YG
Sbjct: 270 LTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG 329
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
++ +N++ + + +FV FS A+A + + K + +R VK+A +
Sbjct: 330 --NIQKVNILRSKK-----KVVSFVEFSSRKSALACVEGISKAKI----NDREVKLAAS 377
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
GK G S N+ LFVG+I TKE I ++ EG+ ++ L + +RGF
Sbjct: 175 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 233
Query: 279 FVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK +F+ +
Sbjct: 234 FLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVKVLFVRNLA 290
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
E + +G + R+ K KDY F+ F AAV ++ +N K
Sbjct: 291 TTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 338
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 13/258 (5%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
++ EI+IG + DA ++++ + + G++ E+RL + ++ N+GYAF+ + KE A +
Sbjct: 33 QDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAANQC 92
Query: 209 LTEMKNPVICGKRCGTAP-SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ I + T S N LF+ I KE I K +G+ + + D
Sbjct: 93 VRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLS-DGLTEVIVYPD 151
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH 327
+ RGFAF+ + H A A ++L V + + V +AE +EP ++ +
Sbjct: 152 PDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSG--KVINVEWAESSKEPKDHVVGN 209
Query: 328 -VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
VK V+ + H E+ + YG + RI K DY FI F++ E+A+
Sbjct: 210 KVKEVYCGNIAEHITEDTLNTAFLQYGSIERI--------KKLHDYAFICFASRESALKA 261
Query: 387 INAINNKEFSDGNSKVKL 404
I + + V+L
Sbjct: 262 IEGVRGTVINGCKVDVQL 279
>gi|22655766|gb|AAN04183.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|31430385|gb|AAP52302.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 728
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YG++ ++ N+ +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKV----NILRSKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 412 MPKTQAVKGGMSGGFRIGHGSS 433
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 112/227 (49%), Gaps = 38/227 (16%)
Query: 103 GDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAI--AKDRKIKKEHEIFIGGLDR 160
G+ D +DE+ ++ E P DE L+ L+++ D+ + E+F+GGL +
Sbjct: 211 GEVADQLSNDEDVGGRENDESPNDE---LDTSLLVLDSVPDGNDKTL----ELFVGGLPK 263
Query: 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICG 219
D +ED+R VF + GEV +R+ K + K AFV++A+ K+ALTE K+ + + G
Sbjct: 264 DCVEEDIRVVFSQCGEVESIRIVK-----KRKRIAFVRYADISATKKALTEFKDGIKVNG 318
Query: 220 KRCGTAPSEDN------------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
K + +E + T+++ + +W + I++ + YG ++ +N++
Sbjct: 319 KSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNILRS 376
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
+ + +FV FS A+A + + K + +R VK+A +
Sbjct: 377 KK-----KVVSFVEFSSRKSALACVEGISKAKI----NDREVKLAAS 414
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 169 KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228
++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++ +I G+ C S+
Sbjct: 4 ELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQ 63
Query: 229 DNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAF 279
+ L F+ N+ +A+ +G NI Q E G S+G+ F
Sbjct: 64 RDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILSCKVAQDEYGNSKGYGF 118
Query: 280 VMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFL 333
V + A A K L + V GH A+ R+ E+ A+ +++
Sbjct: 119 VHYETAEAATNAIKHVNGMLLNEKKVFVGH-------HIAKKDRQSKFEEMKANFTNIYV 171
Query: 334 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
V + + R + YGD+ L+R+ T K + +GF++FS HEAA A + +N
Sbjct: 172 KNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEY 231
Query: 394 EF 395
E
Sbjct: 232 EL 233
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +++D T E+ R +FE+ G++ L ++ T +++G+ F
Sbjct: 153 KDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGF 212
Query: 197 VKFANKEHAKRAL 209
V F++ E A A+
Sbjct: 213 VNFSDHEAASAAV 225
>gi|219363109|ref|NP_001136652.1| uncharacterized protein LOC100216781 [Zea mays]
gi|194696514|gb|ACF82341.1| unknown [Zea mays]
Length = 372
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMS 423
M AKRKD+GF+ F TH+ AVAC I+N E +G+ K K+RARLS P+ + +K G+
Sbjct: 1 MPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQRPPRMKHGLR 60
Query: 424 GGFRIGHGSSR 434
G FR+GHG+ R
Sbjct: 61 GNFRVGHGAPR 71
>gi|115481262|ref|NP_001064224.1| Os10g0167500 [Oryza sativa Japonica Group]
gi|113638833|dbj|BAF26138.1| Os10g0167500 [Oryza sativa Japonica Group]
Length = 703
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YG++ ++ N+ +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKV----NILRSKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 412 MPKTQAVKGGMSGGFRIGHGSS 433
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 112/227 (49%), Gaps = 38/227 (16%)
Query: 103 GDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAI--AKDRKIKKEHEIFIGGLDR 160
G+ D +DE+ ++ E P DE L+ L+++ D+ + E+F+GGL +
Sbjct: 211 GEVADQLSNDEDVGGRENDESPNDE---LDTSLLVLDSVPDGNDKTL----ELFVGGLPK 263
Query: 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICG 219
D +ED+R VF + GEV +R+ K + K AFV++A+ K+ALTE K+ + + G
Sbjct: 264 DCVEEDIRVVFSQCGEVESIRIVK-----KRKRIAFVRYADISATKKALTEFKDGIKVNG 318
Query: 220 KRCGTAPSEDN------------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
K + +E + T+++ + +W + I++ + YG ++ +N++
Sbjct: 319 KSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNILRS 376
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
+ + +FV FS A+A + + K + +R VK+A +
Sbjct: 377 KK-----KVVSFVEFSSRKSALACVEGISKAKI----NDREVKLAAS 414
>gi|218184183|gb|EEC66610.1| hypothetical protein OsI_32844 [Oryza sativa Indica Group]
Length = 690
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG + +E I+ G VE+I +V + AFV ++ D A
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKR------IAFVRYA---DISATK 304
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREP-DPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
K L + ++V+V+ AEP R+ + + + VKTV+L+ P W E I + +G
Sbjct: 305 KALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEG 364
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YG++ ++ N+ +K+K F++FS+ ++A+AC+ I+ + +D +VKL A L+ P
Sbjct: 365 YGNIQKV----NILRSKKKVVSFVEFSSRKSALACVEGISKAKIND--REVKLAASLARP 418
Query: 412 MPKTQAVKGGMSGGFRIGHGSS 433
K Q GGF + G++
Sbjct: 419 QSKVQLANESSKGGFNVHSGAT 440
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 112/227 (49%), Gaps = 38/227 (16%)
Query: 103 GDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAI--AKDRKIKKEHEIFIGGLDR 160
G+ D +DE+ ++ E P DE L+ L+++ D+ + E+F+GGL +
Sbjct: 211 GEVADQLSNDEDVGGRENDESPNDE---LDTSLLVLDSVPDGNDKTL----ELFVGGLPK 263
Query: 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICG 219
D +ED+R VF + GEV +R+ K + K AFV++A+ K+ALTE K+ + + G
Sbjct: 264 DCVEEDIRVVFSQCGEVESIRIVK-----KRKRIAFVRYADISATKKALTEFKDGIKVNG 318
Query: 220 KRCGTAPSEDN------------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
K + +E + T+++ + +W + I++ + YG ++ +N++
Sbjct: 319 KSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNILRS 376
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
+ + +FV FS A+A + + K + +R VK+A +
Sbjct: 377 KK-----KVVSFVEFSSRKSALACVEGISKAKI----NDREVKLAAS 414
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 120/261 (45%), Gaps = 33/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +G+V +R+ ++ T R+ GYA+V + + +RAL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G N+
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFG-------NI 175
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFA 314
+S + G S+G+ FV + A A K L + V GH P++ F
Sbjct: 176 LSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFE 235
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + +++ R+ + YG++ LA + T K + +GF
Sbjct: 236 --------EMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGF 287
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++ HE A ++ +N+ +F
Sbjct: 288 VNYINHEDAYKAVDELNDSDF 308
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 41/70 (58%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ ++ + T ++ R++FE+ GE+ L + T +++G+ FV + N E A +A+ E+
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDEL 303
Query: 213 KNPVICGKRC 222
+ G++
Sbjct: 304 NDSDFHGQKL 313
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 34/262 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G L+ + + +F ++G+V+ VR+ ++ +T R+ GY +V F N + A RAL
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 210 --TEMKNPVI---------CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
T M N I ++ GTA +F+ N+ T +A+ +G
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTA------NIFIKNLDKTIDHKALHDTFSSFG--Q 145
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + +D G S+G+ FV F A A +L G +V LR
Sbjct: 146 IMSCKIATD--GSGQSKGYGFVQFEAEDSAQNAIDKLN------GMLINDKQVFVGHFLR 197
Query: 319 EPDPE-IMAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
+ D + +++ K V++ + + E+ ++++ YG + VL R+ + + K +GF+
Sbjct: 198 KQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFV 256
Query: 376 DFSTHEAAVACINAINNKEFSD 397
+F E A + A+N K+ D
Sbjct: 257 NFENAEDAAKAVEALNGKKVDD 278
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 30/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G+++ ++ + + ++KGY FV+F ++ A+ A+ ++
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 213 KNPVICGKRCGTA-----PSEDN-------DTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+I K+ DN + ++V N+ ++T++ +K + YG +
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGT--IT 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-----VFGHP------ERTV 309
+ L+ D +G S+ F FV F DA A + L V G E+ +
Sbjct: 239 SAVLMRD--ADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQEL 296
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
K F + ++E + + ++L + + ++++ +G + + R+ + R
Sbjct: 297 KGRFEQTVKESVVDKFQGL-NLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSR 355
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
GF+ FST E A + +N K
Sbjct: 356 GS-GFVAFSTPEEASRALGEMNGK 378
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 63 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K+
Sbjct: 178 CKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLE-- 235
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + + + + YG+V+ + R+ K + +GF
Sbjct: 236 --------EMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFGF 286
Query: 375 IDFSTHEAAVACINAINNKEF 395
++F++HE+A + +N+KEF
Sbjct: 287 VNFASHESAAKAVEELNDKEF 307
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 141 IAK-DRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
IAK DR+ K E ++I +D + E+ K+FE GEV+ + ++ +++G
Sbjct: 225 IAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRG 283
Query: 194 YAFVKFANKEHAKRALTEMKNPVICGKRC 222
+ FV FA+ E A +A+ E+ + GK+
Sbjct: 284 FGFVNFASHESAAKAVEELNDKEFHGKKL 312
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 169
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 228
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S F
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMS------------------------SPTFKLDSNAPT 264
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
V++A+P + D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 265 VSWADP-KNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 324 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 359
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 169
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 228
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S F
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMS------------------------SPTFKLDSNAPT 264
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
V++A+P + D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 265 VSWADP-KNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 324 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 359
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 19/253 (7%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+G + RD + ++ VF+ +G V E+RL + + N+G+AFV FA A +A
Sbjct: 25 KGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMMD-TNETNRGFAFVTFATPADAGKA 83
Query: 209 LTEM-KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+ ++ + + G+ G S DN LF+G I ++E I +++ EGV + L S
Sbjct: 84 IQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRI-TEGVVRVILYSS 142
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD--VVFGHPERTVKVAFAEPLREPDPEIM 325
+ + +RGFAF+ + H A A +R PD +++G + V V +AEP + EI+
Sbjct: 143 VADKKKNRGFAFIEYESH-RAAALARRKCLPDRLLLWG---KNVAVDWAEPEPVVEEEIL 198
Query: 326 AHVKTVFLDGVPPHWKENQIRDQI--KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+ V+ +++ + KE ++ + G G V ++ + D+ FI F + A
Sbjct: 199 SKVRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKIL--------NDFAFIHFGSRSQA 250
Query: 384 VACINAINNKEFS 396
++A+ S
Sbjct: 251 QQAMDALQGIRVS 263
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 132/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 125 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 182
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 183 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 241
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S + +D+ A P V + P+
Sbjct: 242 RNRGYGFVEYYNHACAEYARQEMSSP------TFKLDSNA-------PTVSWADPKNN-- 286
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 287 ----------DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 336
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 337 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 372
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 22/271 (8%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E+ IF+ + R T ++++ F G+V + + KN T KG+ FVKFA + AL
Sbjct: 52 EYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVHAAL 111
Query: 210 TEMKNPVI---CGKRCGTAP---SEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENI 262
P R T ++ + L+VGNI +++ ++ L++ V
Sbjct: 112 DMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQEATTTYEVTKF 171
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
L + + EG S+G+ + F H A+ + LQ VFG + V AEP R +
Sbjct: 172 KLCTTL--EGESKGYGWATFKDHKCAVQGMRLLQSTP-VFG---LYLNVHMAEP-RTQEE 224
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHE 381
+++A VK++F+ GV P ++ +GD ++V+ +++T + F+ F+T +
Sbjct: 225 DMLARVKSLFVRGVSPTTNAEAMK---AFFGDGCEKVVIPLDVTTRAVLGHAFVHFATRQ 281
Query: 382 AAVA----CINAINNKEFSDGNSKVKLRARL 408
A A C NA E G+ V + A +
Sbjct: 282 QAEAAMQRCQNATLEGESGAGHPVVAIGAAI 312
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + +RAL E+
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 114
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 115 NYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-----NILS 169
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G SRG+ FV + A AA K L + V GH P++ F
Sbjct: 170 CKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFE-- 227
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + +++ R+ + YG++ LAR+ K + +GF++
Sbjct: 228 ------EMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GKVRGFGFVN 280
Query: 377 FSTHEAAVACINAINNKEF 395
+ HE A ++ +N+ +F
Sbjct: 281 YIRHEDANKAVDELNDIDF 299
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 166
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 167 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 224
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + P + + R+ YGD+ ++R+ + K + +GF
Sbjct: 225 --------EMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRD-DSGKSRGFGF 275
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++ H+ A + ++ +N+K+F
Sbjct: 276 VNYVDHQNAQSAVDELNDKDF 296
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 141/293 (48%), Gaps = 17/293 (5%)
Query: 114 EEFADDDMEEPADEA-ETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFE 172
E+ + D+ E+P E+ E ++ E +A AK+ + +++G L+ + + ++F
Sbjct: 13 EKLSLDNKEQPPKESTEQSKETTTETSAPAKENLGETSASLYVGELNTSVNEALLFEIFS 72
Query: 173 RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
IG+V +R+ ++ T ++ GYA+V F + ++A+ ++ +I G+ C S+ + +
Sbjct: 73 PIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLNYSLIEGRPCRIMWSQRDPS 132
Query: 233 L--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284
L F+ N+ +A+ +G + + + +D G S+ F FV +
Sbjct: 133 LRRNGEGNIFIKNLHPAIDNKALHDTFSAFGR--ILSCKVATD--ELGNSKCFGFVHYET 188
Query: 285 HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKEN 343
A AA + + ++ E V ++ RE E+ A+ VF+ + P + +
Sbjct: 189 AEAAEAAIENVN--GMLLNDREVFVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYTDQ 246
Query: 344 QIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
++++ YG + L +++ K K +GF++F H AV ++ +NNKE +
Sbjct: 247 ELKELFSAYGPITSSYLEKDLE-GKSKGFGFVNFDNHNDAVKAVDELNNKEIA 298
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
+FV N+ +T + +K+ YG + + L D+ EG S+GF FV F H DA+ A
Sbjct: 234 VFVKNLAPEYTDQELKELFSAYGP--ITSSYLEKDL--EGKSKGFGFVNFDNHNDAVKAV 289
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN--------- 343
L ++ G P + V A+ RE E+ + L+ + + N
Sbjct: 290 DELNNKEIA-GQP---IYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDT 345
Query: 344 ----QIRDQIKGYGDVIRIVLARNM--STAKRKDYGFIDFSTHEAAVACINAINNK 393
++ ++ K +G+ I AR M K K +GF+ FS+ E A I +N +
Sbjct: 346 IDSEKLENEFKPFGN---ITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQR 398
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 129 ETLEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
E +E+ RR+ A ++ K + +FI LD E + F+ G + R+ +
Sbjct: 312 ERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEKLENEFKPFGNITSARVMVD-E 370
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
++KG+ FV F++ E A +A+TEM ++ GK A ++ D
Sbjct: 371 QGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALAQRKDV 415
>gi|440798060|gb|ELR19131.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 560
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ L D +++ + ++F GEV++++L K+ S+ + YAFV++++ E A AL
Sbjct: 127 LFVASLSPDTSEDALHELFATHGEVLKIKLMKDRSS---RPYAFVQYSSTEEANNALLLT 183
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 272
N + G+R ++ N TLF+ + + T +++ ++ YG VE + ++ + Q +
Sbjct: 184 NNVALDGRRLRVEKAKVNRTLFIAKMNRSLTNVKLREAVECYG--PVEIVTVIKNHQTQK 241
Query: 273 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-TV 331
S+G FV F DAMAAY G + K DP+++ K V
Sbjct: 242 -SKGCGFVKFVFREDAMAAY---------LGLKNQFRKWVVEWATSSNDPDVLGVDKYNV 291
Query: 332 FLDGVPPHW-KENQIRDQIKGYGDVIRIVLA------RNMSTAKRKDYGFIDFSTHEAAV 384
F+ G+ P + + ++ YG V + L N R + F+ F ++
Sbjct: 292 FVGGLNPLLVTKAALEERFGAYGQVDAVTLINRDEAQENSMALPRNAFAFVRFRHASSSA 351
Query: 385 ACINAINNKEFSDGNSKVK 403
+ I N E+ + +V+
Sbjct: 352 SAIEHENGAEWLERRIRVQ 370
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
K K +FI ++R T +R+ E G V V + KN T ++KG FVKF +E A
Sbjct: 197 KAKVNRTLFIAKMNRSLTNVKLREAVECYGPVEIVTVIKNHQTQKSKGCGFVKFVFREDA 256
Query: 206 KRALTEMKNPVICGKRCGTAPSEDNDTL-------FVGNICNTW-TKEAIKQKLKDYG-V 256
A +KN S D D L FVG + TK A++++ YG V
Sbjct: 257 MAAYLGLKNQFRKWVVEWATSSNDPDVLGVDKYNVFVGGLNPLLVTKAALEERFGAYGQV 316
Query: 257 EGVENINLVSDIQHEGLS---RGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313
+ V IN + Q ++ FAFV F + +A + + + ER ++V +
Sbjct: 317 DAVTLINR-DEAQENSMALPRNAFAFVRFRHASSSASAIEHENGAEWL----ERRIRVQY 371
Query: 314 AEPL 317
E L
Sbjct: 372 CESL 375
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 119/256 (46%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + T + +F ++G+V+ VR+ ++ ST R+ GY +V ++N A RA+ +
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK S + TL F+ N+ + +A+ +G + + +
Sbjct: 100 NFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFG--NILSCKI 157
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+G+ FV + A A +L G +V LR+ + E
Sbjct: 158 ATD--SNGQSKGYGFVQYDNEESAQGAIDKLN------GMLMNDKQVYVGHFLRKQERES 209
Query: 325 ---MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
M + V++ + +++++ +G++ V+ R+ + K K +GFI+F T E
Sbjct: 210 TTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAE 268
Query: 382 AAVACINAINNKEFSD 397
A + ++N K+F D
Sbjct: 269 DAAKAVESLNGKKFDD 284
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 37/291 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + S ++KGY FV++ N+E A+ A+ ++
Sbjct: 128 IFIKNLDKSIDNKALHDTFSSFGNILSCKIATD-SNGQSKGYGFVQYDNEESAQGAIDKL 186
Query: 213 KNPVICGK------------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ K R T ++V N+ + T + +K+ ++G
Sbjct: 187 NGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFG----- 241
Query: 261 NINLVSDIQH---EGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHP------E 306
N+ S + +G S+ F F+ F DA A K+ + G E
Sbjct: 242 --NITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSERE 299
Query: 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366
+ +K F + +E + +++ + + ++++ +G + + R+ S
Sbjct: 300 QELKSKFEQTAKEAVDKYQGL--NLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG 357
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
R GF+ FST E A ++ +N K V L R K QA
Sbjct: 358 ISRGS-GFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQA 407
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 74 VDKEEDLKSKLLG-ENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLE 132
V ++ D KSK G NF++ D + E ++ + D++E+ ++ ++ + L+
Sbjct: 248 VMRDADGKSKCFGFINFETAEDAAKAVE----SLNGKKFDDKEWYVGKAQKKSEREQELK 303
Query: 133 DERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
+ + A D+ + +++ LD E ++++F G + ++ ++ S ++
Sbjct: 304 SKFEQTAKEAVDKY--QGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPS-GISR 360
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGK 220
G FV F+ E A RAL+EM +I K
Sbjct: 361 GSGFVAFSTSEEASRALSEMNGKMIVSK 388
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 132/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 124 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 181
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 182 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 240
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S + +D+ A P V + P+
Sbjct: 241 RNRGYGFVEYYNHACAEYARQEMSSP------TFKLDSNA-------PTVSWADPKNN-- 285
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 286 ----------DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 335
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 336 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 371
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 126/263 (47%), Gaps = 32/263 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D T+ + +VF +G V +R+ ++ T R+ GYA+V + + A+R+L +
Sbjct: 86 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 145
Query: 213 KNPVICGKRCGTA-----PS---EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ C PS N +FV N+ +A+ +G N+
Sbjct: 146 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFG-------NI 198
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-LREP 320
+S + G S+G+ FV + A +A ++ ++ G K + P +R
Sbjct: 199 LSCKVAVDENGHSKGYGFVHYENEESARSAIDKVN--GMLIGG-----KTVYVGPFIRRA 251
Query: 321 DPEIMAHVK--TVFLDGVPPHWK-ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ + +A K V++ +P W+ E ++R+ YG + +V+ ++ K + + F +F
Sbjct: 252 ERDNLAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKD---PKGRLFAFCNF 308
Query: 378 STHEAAVACINAINNKEFSDGNS 400
+ H++A A + A+N K +D +
Sbjct: 309 ADHDSAKAAVEALNGKRVTDAGA 331
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 33/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + +RAL E+
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 169
Query: 265 VSDIQHEGL-SRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E S+G+ FV + A A K L + V GH +R KV
Sbjct: 170 CKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVE-- 227
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + +N+ R+ + YGD+ LA + + K + +GF
Sbjct: 228 --------EMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGF 279
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++ HE A + +N+ +F
Sbjct: 280 VNYIRHEDAYKAVEELNDSDF 300
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR K E I++ +D + T + R++FE+ G++ L + + +N+G+ F
Sbjct: 220 KDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGF 279
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V + E A +A+ E+ + G++
Sbjct: 280 VNYIRHEDAYKAVEELNDSDFKGQKL 305
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 25/272 (9%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
L+VG + + T+ + + G V +I + D S G+A+V ++ D A
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQ--VASIRVCRDAVTR-RSLGYAYVNYNVAGDGERAL 111
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-TVFLDGVPPHWKENQIRDQIKG 351
+ L ++ G P R + + DP + + VF+ + + D
Sbjct: 112 EELNY-TLIKGRPCRIM-------WSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAA 163
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
+G+++ +A++ A K YGF+ + T EAA I +N ++ V +
Sbjct: 164 FGNILSCKVAQD-ENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDR 222
Query: 412 MPKTQAVKGGMSGGFRIGHGSSRT-------FSRYGRGSGRAGHHFNRANFQRGRGFYQH 464
M K + +K + + S T F +YG + + H N + RG GF +
Sbjct: 223 MSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNY 282
Query: 465 GRNHSSRMGPTEYDFDNRYTEFHGRQ-FIGRG 495
R+ + E + ++F G++ ++GR
Sbjct: 283 IRHEDAYKAVEELN----DSDFKGQKLYVGRA 310
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 169
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 228
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S F
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMS------------------------SPTFKLDSNAPT 264
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
V++A+P + D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 265 VSWADP-KNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 324 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 359
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + + R+ + +GD+ +AR+ K + +GF++
Sbjct: 222 -----EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA ++ +N+ EF
Sbjct: 276 YIRHEAAAVAVDHLNDIEF 294
>gi|33390912|gb|AAQ17123.1| flowering time control protein isoform OsFCA-1 [Oryza sativa Indica
Group]
gi|47496990|dbj|BAD20100.1| Flowering time control protein FCA gamma-like [Oryza sativa
Japonica Group]
gi|50261763|gb|AAT72462.1| FCA gamma protein [Oryza sativa Japonica Group]
gi|58003966|gb|AAW62371.1| FCA [Oryza sativa Japonica Group]
Length = 738
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR 295
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF+++
Sbjct: 205 RERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSR 263
Query: 203 EHAKRALTEM 212
E A A++ +
Sbjct: 264 EPALAAMSAL 273
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L ++ T +++ F+ ++T E A I A+
Sbjct: 124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 391 NNK 393
+N+
Sbjct: 184 HNQ 186
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 166
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 167 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 224
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + P + + R+ +GD+ ++R+ + K + +GF
Sbjct: 225 --------EMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRD-DSGKSRGFGF 275
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++ HE A ++ +N+K+F
Sbjct: 276 VNYVDHENAQTAVDDLNDKDF 296
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 54/281 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+++GG+ D + ED++++ E +GEV+EVR+ + +R GYAFV F K A +A+ E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKE 169
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV------ 265
+ N + GKR + S+ + LF+GN+ ++WT + ++ +++ G GV +L+
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG-PGVLKADLMKVSSAN 228
Query: 266 ---------------SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
++ + +S F
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMS------------------------SPTFKLDSNAPT 264
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
V++A+P + D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 265 VSWADP-KNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 371 DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
YGF+ F A + A+ N E + + +V L L+ P
Sbjct: 324 -YGFVHFKDRSMA---MRALQNTERYELDGQV-LDCSLAKP 359
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR 295
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF+++
Sbjct: 205 RERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSR 263
Query: 203 EHAKRALTEM 212
E A A++ +
Sbjct: 264 EPALAAMSAL 273
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L ++ T +++ F+ ++T E A I A+
Sbjct: 124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 391 NNK 393
+N+
Sbjct: 184 HNQ 186
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 127/263 (48%), Gaps = 32/263 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D T+ + +VF +G V +R+ ++ T R+ GYA+V + + A+R+L +
Sbjct: 85 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 144
Query: 213 KNPVICGKRCGTA-----PS---EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ C PS N +FV N+ +A+ +G N+
Sbjct: 145 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFG-------NI 197
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-LREP 320
+S + G S+G+ FV + A +A ++ ++ G K + P +R
Sbjct: 198 LSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVN--GMLIGG-----KTVYVGPFIRRA 250
Query: 321 DPEIMAHVK--TVFLDGVPPHWK-ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ + +A K V++ +P W+ E+++R+ +G + +V+ ++ K + + F +F
Sbjct: 251 ERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKD---PKGRLFAFCNF 307
Query: 378 STHEAAVACINAINNKEFSDGNS 400
+ H++A A + A+N K +D +
Sbjct: 308 ADHDSAKAAVEALNGKRVTDAGA 330
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ED+R +FE G V+EV L K+ T + +G F+K+A E A+RA+
Sbjct: 103 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 162
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T++ +K+ YG VE
Sbjct: 163 LHNQYTLPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQ--VE 220
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV FS AMAA L + G ++ + V FA+P R
Sbjct: 221 DVYLMRDELKQ--SRGCGFVNFSHRDMAMAAINALNGIYTMKGC-DQPLTVRFADPKR 275
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 104 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKD-KRTGQQQGCCFIKYATSEEAERAI 160
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + E ++++ Y
Sbjct: 161 RALHNQYTLPGG-VGPIEVRYADGERE---RLGAVEYKLFVGSLNKQATEKEVKEIFSPY 216
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411
G V + L R+ + + GF++FS + A+A INA+N G + L R ++P
Sbjct: 217 GQVEDVYLMRD-ELKQSRGCGFVNFSHRDMAMAAINALNGIYTMKGCDQ-PLTVRFADP 273
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 127 EAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF 186
E + ER L A+ E+++F+G L++ AT+++V+++F G+V +V L ++
Sbjct: 177 EVRYADGERERLGAV--------EYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD- 227
Query: 187 STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222
+++G FV F++++ A A+ + N + K C
Sbjct: 228 ELKQSRGCGFVNFSHRDMAMAAINAL-NGIYTMKGC 262
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+ +
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRIL 59
Query: 213 KNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
N I GK G S DN LF+G I KE I ++K EGV ++ + +
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDK 118
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRL 295
+RGFAFV + H A A ++L
Sbjct: 119 TKNRGFAFVEYESHRAAAMARRKL 142
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 131/306 (42%), Gaps = 32/306 (10%)
Query: 180 VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR-CGTAPSEDNDTLFVGNI 238
+RL +FS + N+GYAFV + + A A+ ++ I +R G S DN LFVGNI
Sbjct: 1 MRLMMDFSGS-NRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNI 59
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
T TKE ++++L V + ++ L + L+RGFAFV F+CH A A + L
Sbjct: 60 PKTKTKEDVREELSK-RVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPG 118
Query: 299 DVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI 358
V E V V +AEP + D E M VK +++ +I+ DVI+
Sbjct: 119 CVRLWDQE--VMVDWAEPEPDIDDEQMQRVKVLYVRNF-----------EIRTTPDVIQK 165
Query: 359 VLARNMS-----TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMP 413
V ++ K DY FI F E A I + N + N +++ + +
Sbjct: 166 VFESTINHKVERVKKIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKPVDRDLY 225
Query: 414 KTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAGHHFNRANFQRG---RGFYQHGRNHSS 470
+ Q + G + F ++T Y HH + + G G SS
Sbjct: 226 RIQKLSRG-NAKFNNSLDLTQTLLLY-------KHHIEKQEYANGPKDEGIGSACAGGSS 277
Query: 471 RMGPTE 476
PT+
Sbjct: 278 CCSPTD 283
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 153 IFIGGLDRDATQEDVR-KVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFA 200
+F+G + + T+EDVR ++ +R+ ++++V L+KN F N+G+AFV+F
Sbjct: 54 LFVGNIPKTKTKEDVREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFT 103
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+EIF GG+++ +E++ ++F + V+E+RL K+ T +KG+ FV F ++ +
Sbjct: 92 NEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNV 151
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
+ ++ I GK SE+ LF+GN+ +KE + EG+E+I+ +
Sbjct: 152 IDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNE-KTEGIESIDFLMSP 210
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP---LREP--DPE 323
+RGFAF+ + H A A + L V G T+ V +++P +P DP
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 324 IMAHVKTVFLDGVP 337
+K +++ +P
Sbjct: 271 ENKEIKAIYIRNLP 284
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 139
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R
Sbjct: 140 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR 194
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF+++
Sbjct: 104 RERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSR 162
Query: 203 EHAKRALTEM 212
E A A++ +
Sbjct: 163 EPALAAMSAL 172
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L ++ T +++ F+ ++T E A I A+
Sbjct: 23 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 82
Query: 391 NNK 393
+N+
Sbjct: 83 HNQ 85
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Query: 132 EDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
E+ +R+ A K +K EIFIG L RD ++++ V E G V E+R+ +F+ N N
Sbjct: 57 ENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLDFNGN-N 115
Query: 192 KGYAFVKFANKEHAKRALTEMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQK 250
+G+ FV + + ++ AL + N + G+ G S DN LFVG I + ++ I ++
Sbjct: 116 RGFCFVTYQTRNESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEE 175
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTV 309
+K EGV ++ + + +RGF+FV + H A A ++L + ++GH +
Sbjct: 176 MKKV-TEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGH---QI 231
Query: 310 KVAFAEPLREPDPEIM 325
V +AEP E + +M
Sbjct: 232 AVDWAEPEIEVEESVM 247
>gi|115478012|ref|NP_001062601.1| Os09g0123200 [Oryza sativa Japonica Group]
gi|34555646|gb|AAQ74971.1| flowering time control protein isoform OsFCA-3 [Oryza sativa Indica
Group]
gi|113630834|dbj|BAF24515.1| Os09g0123200 [Oryza sativa Japonica Group]
Length = 637
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 139
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R
Sbjct: 140 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR 194
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF+++
Sbjct: 104 RERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSR 162
Query: 203 EHAKRALTEM 212
E A A++ +
Sbjct: 163 EPALAAMSAL 172
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L ++ T +++ F+ ++T E A I A+
Sbjct: 23 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 82
Query: 391 NNK 393
+N+
Sbjct: 83 HNQ 85
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ED+R +FE G V+EV L K+ T + +G F+K+A E A+RA+
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T++ +K+ YG VE
Sbjct: 179 LHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQ--VE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV FS AMAA L + G ++ + V FA+P R
Sbjct: 237 DVYLMRDELKQ--SRGCGFVKFSHRDMAMAAINALNGIYTMRGC-DQPLTVRFADPKR 291
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 120 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKD-KRTGQQQGCCFIKYATSEEAERAI 176
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + E ++++ Y
Sbjct: 177 RALHNQYTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATEKEVKEIFSPY 232
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ + + GF+ FS + A+A INA+N
Sbjct: 233 GQVEDVYLMRD-ELKQSRGCGFVKFSHRDMAMAAINALN 270
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 134 ERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
ER L A+ E+++F+G L++ AT+++V+++F G+V +V L ++ +++G
Sbjct: 200 ERERLGAV--------EYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD-ELKQSRG 250
Query: 194 YAFVKFANKEHAKRALTEM 212
FVKF++++ A A+ +
Sbjct: 251 CGFVKFSHRDMAMAAINAL 269
>gi|313226301|emb|CBY21445.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 141 IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
I KD K+H IF+G L ++ T D++ FE+ G++ E R+ ++ TNR+KGY FV F
Sbjct: 128 IKKD--TSKDHHIFVGDLAQELTTLDLQNEFEKFGKISEARVVRDAQTNRSKGYGFVAFL 185
Query: 201 NKEHAKRALTEMKNPVICGK---------------------RCGTAPSEDNDTLFVGNIC 239
KE A+ A+TEM N ICG+ + A S N T++VG I
Sbjct: 186 KKESAEMAITEMNNKSICGREVRTNWATSRKLPPPTVIDPHKVAQASSFSNTTVYVGGIT 245
Query: 240 -NTWTKEAIKQKLKDYGV 256
+ T++ ++ +GV
Sbjct: 246 KDVHTQQVLQASFSRFGV 263
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 119/289 (41%), Gaps = 42/289 (14%)
Query: 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
L+ AKD +I K +++G L ++AT+ ++ +F IG V+++++ N + Y F+
Sbjct: 35 LSEQAKDDEIFKR-TLYVGNLHKNATENVLKALFAVIGNVVDIKM-INDAALSTSHYCFI 92
Query: 198 KFANKEHAKRALTEM------KNPVICGKRCGTAP------SEDNDTLFVGNICNTWTKE 245
+ A+RAL M K P+ T P + + +FVG++ T
Sbjct: 93 TYETHVGAQRALAAMNGRDVYKMPLKV--NWATRPDGIKKDTSKDHHIFVGDLAQELTTL 150
Query: 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305
++ + + +G + +V D Q S+G+ FV F A A + +
Sbjct: 151 DLQNEFEKFG--KISEARVVRDAQ-TNRSKGYGFVAFLKKESAEMAITEMNNKSIC---- 203
Query: 306 ERTVKVAFAEPLREPDPEIMAHVK----------TVFLDGVPPHWKENQI-RDQIKGYGD 354
R V+ +A + P P ++ K TV++ G+ Q+ + +G
Sbjct: 204 GREVRTNWATSRKLPPPTVIDPHKVAQASSFSNTTVYVGGITKDVHTQQVLQASFSRFGV 263
Query: 355 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403
V + R T +GF+ TH+AA I +N S K +
Sbjct: 264 VEEV---RTFET-----FGFVKMQTHQAATNAICEMNGASISGCTVKCR 304
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 24/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +AT+ + F + G V+ +R+ ++ T R+ GYA+V F E A+RA+ M
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYG--VEGVENI 262
+ GK S+ + L F+ N+ T + + +G + N+
Sbjct: 73 NFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKVNV 132
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF---AEPLRE 319
NL G S+G+ FV F AA K ++K D + + ++ F E +RE
Sbjct: 133 NLA------GESKGYGFVHFETE---EAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVRE 183
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
+ VF+ +P W + ++ + +G V+ + LA + K + +GF+ F T
Sbjct: 184 YG-DRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFET 241
Query: 380 HEAAVACINAINNKEF 395
HE A + +++KEF
Sbjct: 242 HECAEKVVEKLHDKEF 257
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+++ LD T + +R+ F G + +V + R+KG+ FV F + E A +A+T
Sbjct: 297 LYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVT 356
Query: 211 EMKNPVICGKRCGTAPSEDND 231
EM +I K A ++ D
Sbjct: 357 EMNGRIIASKPLYVALAQRKD 377
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 132/289 (45%), Gaps = 19/289 (6%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHE---IFIGGLDRDATQEDVRKVFERIG 175
D ++ A++ E L+ E + + K E +++G L+ ++ + +F IG
Sbjct: 3 DITDKTAEQLEQLKIEEQTAPTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIG 62
Query: 176 EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL-- 233
V +R+ ++ TN + GYA+V F + E +A+ ++ +I GK C S+ + +L
Sbjct: 63 SVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRK 122
Query: 234 ------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
++ N+ +++ + +G + + + +D G+SRGF FV F D
Sbjct: 123 KGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKVATD--ENGVSRGFGFVHFENESD 178
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIR 346
A A + + ++ E V + ++ R+ E+ A V++ + + +
Sbjct: 179 ARDAIEAVD--GMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFE 236
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ YG + VL ++ S K + +GF++F H AA ++ +N EF
Sbjct: 237 ELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEF 284
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 23 SSKQKEPALVEV-AKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
S K ++ L EV AK ++ Y + D++ +EE E + K T V E+D +
Sbjct: 203 SKKDRQSKLEEVKAKFTNV------YVKNIDQETSQEEFEELFGKYGKITSAV-LEKDSE 255
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVD-YGEHDEEEFADDDM--EEPADEAETLEDERREL 138
KL G F + +ED+ E +E EF + + E L++ +++
Sbjct: 256 GKLRGFGFVN-------FEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
Query: 139 NAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
A A+ K+ K +F+ LD E +++ F G + ++ ++ T ++G+ F
Sbjct: 309 EA-ARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGF 366
Query: 197 VKFANKEHAKRALTEMKNPVICGK 220
V F+ E A +A+TE ++ GK
Sbjct: 367 VCFSTPEEATKAITEKNQQIVAGK 390
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K E+F+G + RD ++++ VFE IG + E+RL +F +N+G+ FV F + HA++A
Sbjct: 71 KGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFD-GKNRGFCFVMFTERSHARQA 129
Query: 209 LTEMKN-PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
++ + N + G+ G S DN LFVG I + KE I +LK V N N
Sbjct: 130 ISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKK-----VTNKN---- 180
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
RGFAFV + H A A ++L
Sbjct: 181 -------RGFAFVEYETHKAAAMARRKL 201
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK-FANKEHAKRALTEMKNPVIC--GKR 221
++V + ERIG + ++ KG +K N++ + +T + P+I G+R
Sbjct: 7 DNVEQQMERIGRITTIK----------KGLDCIKDCQNEDKIRELITRINYPIIQENGQR 56
Query: 222 --------CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 273
CG P++ + +FVG I ++ I + G + + L+ D +G
Sbjct: 57 KLGPPPDYCGEIPTKGCE-VFVGKIPRDLFEDEIFPVFEMIG--PIYELRLMMDF--DGK 111
Query: 274 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 333
+RGF FVMF+ A A RL ++ G RT+ V + +F+
Sbjct: 112 NRGFCFVMFTERSHARQAISRLNNFEIRKG---RTLGVCSS-----------VDNCRLFV 157
Query: 334 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
G+P K+ +I ++K T K + + F+++ TH+AA
Sbjct: 158 GGIPKSRKKEEIMHELKKV-------------TNKNRGFAFVEYETHKAA 194
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 47/243 (19%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+ +RGF F+ + H A A VK
Sbjct: 285 KKKNRGFCFLEYEDHKSA-------------------------------------AQVKV 307
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ + E + +G + R+ K KDY F+ F AAV ++ +
Sbjct: 308 LFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEM 359
Query: 391 NNK 393
N K
Sbjct: 360 NGK 362
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 15/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+++G L + T+ + ++F IG V+ +R+ ++ T R+ GYA+V F A+RAL
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 212 MKNPVICGKRCGTAPSEDNDT--------LFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ +I GK C S+ + +F+ N+ T +A+ +G NI
Sbjct: 106 LNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFG-----NIL 160
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
+ E S+G+ FV + A A ++ +V + V + R E
Sbjct: 161 SCKVVTDENGSKGYGFVHYETQEAAETAIAKVN--GMVINGKQVFVGIFVPRKERVELGE 218
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+ VF+ +P + + D +G + +V+ ++ K K +GF+ + E A
Sbjct: 219 GVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDA 278
Query: 384 VACINAINNKEFS 396
A +NA+N E +
Sbjct: 279 QAAVNALNGTELA 291
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 36/269 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGY FV + +E A+ A+ ++
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTD--ENGSKGYGFVHYETQEAAETAIAKV 192
Query: 213 KNPVICGKRCGT---APSEDNDTL----------FVGNICNTWTKEAIKQKLKDYGVEGV 259
VI GK+ P ++ L FV N+ T A+ +G
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITS 252
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
I SD + S+GF FV + DA AA L ++ +T+ VA A+ E
Sbjct: 253 VVIMKSSD---DDKSKGFGFVCYEKVEDAQAAVNALNGTELA----GKTLFVARAQKKAE 305
Query: 320 PDPEIMAHVKTVFLD------GVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMST 366
+ E+ + L+ G+ + K E++IR + +G + + + R+
Sbjct: 306 REAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRD-EK 364
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEF 395
K + +GFI FS+ E A + +N +
Sbjct: 365 GKSRGFGFICFSSAEEATKAVTEMNGQTI 393
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAK 206
+ K +F+ L D T + +F + G++ V + K+ +++KG+ FV + E A+
Sbjct: 220 VTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQ 279
Query: 207 RALTEMKNPVICGKRCGTAPSEDND------------------------TLFVGNICNTW 242
A+ + + GK A ++ L+V N+ +
Sbjct: 280 AAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAI 339
Query: 243 TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302
++ I+ + +G + ++ ++ D +G SRGF F+ FS +A A + +
Sbjct: 340 DEDKIRTEFAPFGT--ITSVKIMRD--EKGKSRGFGFICFSSAEEATKAVTEMNG-QTIQ 394
Query: 303 GHPERTVKVAFAEPLREPDPEIMAH 327
G P + + VA A+ + ++ AH
Sbjct: 395 GFP-KPLYVALAQRAEDRRAQLAAH 418
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + R AT++DVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + + FA+P R
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGC-EQPLIIRFADPKR 295
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + ++R EH
Sbjct: 154 IKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEH 213
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF+++E A A++
Sbjct: 214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSA 272
Query: 212 MK 213
+
Sbjct: 273 LS 274
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L ++ T +++ F+ ++T E A I A+
Sbjct: 124 LFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 391 NNK 393
+N+
Sbjct: 184 HNQ 186
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQK 250
++GYAFV F K A + + E+ N + GKR + S+ + LF+GN+ ++WT + ++
Sbjct: 8 SRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKA 67
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310
+++ G GV +L+ + +RG+ FV + H A A Y R + F
Sbjct: 68 VEEVG-PGVLKADLM-KVSSANRNRGYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPT 123
Query: 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
V++A+P + D + VK+V++ +P + + Q++ + +G++ ++VL + +
Sbjct: 124 VSWADP-KNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 182
Query: 371 DYGFIDFSTHEAAVACINAINNKE 394
YGF+ F A + A+ N E
Sbjct: 183 -YGFVHFKDRSMA---MRALQNTE 202
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 139 NAIAKDRKIK-----KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNK 192
NA K ++I+ ++++FIG + T +D RK E +G V++ L K S NRN+
Sbjct: 31 NAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNR 90
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS------EDNDTLFVGNICNTWTKEA 246
GY FV++ N A+ A EM +P K AP+ ++ND++ + + + K
Sbjct: 91 GYGFVEYYNHACAEYARQEMSSPTF--KLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNL 148
Query: 247 IK 248
K
Sbjct: 149 PK 150
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+EIF GG+++ +E++ ++F + V+E+RL K+ T +KG+ FV F ++ +
Sbjct: 92 NEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNV 151
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
+ ++ I GK SE+ LF+GN+ +KE + EG+E+I+ +
Sbjct: 152 IDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNE-KTEGIESIDFLMSP 210
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP---LREP--DPE 323
+RGFAF+ + H A A + L V G T+ V +++P +P DP
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 324 IMAHVKTVFLDGVP 337
+K +++ +P
Sbjct: 271 ENKEIKAIYIRNLP 284
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 119/255 (46%), Gaps = 25/255 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +D T + ++F ++G V +R+ ++ +T R+ YA+V + N A+RAL +
Sbjct: 10 LYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDTL 69
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
N ++ GK C S+ + +L F+ N+ + +A+ +G + + +
Sbjct: 70 NNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFG--NILSCKV 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV----VFGHPERTVKVAFAEPLREP 320
V+D +S+GF FV + A A ++ + VF P ++ K R
Sbjct: 128 VTD--ETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKE------RGQ 179
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ V++ + E ++RD + YG + + + + +K K +GF +F T
Sbjct: 180 TQEL--KYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSD-EKSKSKGFGFANFETP 236
Query: 381 EAAVACINAINNKEF 395
+ A C+ A N K F
Sbjct: 237 DEAKNCVEAENGKLF 251
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/252 (18%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + TN +KG+ FV + +++ A +A+ ++
Sbjct: 98 IFIKNLDKSVDHKALFDTFSAFGNILSCKVVTD-ETNVSKGFGFVHYESQDSADKAIMKV 156
Query: 213 KNPVICGKRCGTAPSEDN-----------DTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261
+I ++ P + + ++V N+ +E ++ L YG + N
Sbjct: 157 NGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYG--KITN 214
Query: 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
+ ++SD + S+GF F F +A + + + G + + V A+ E +
Sbjct: 215 LTIMSD--EKSKSKGFGFANFETPDEAKNCVEA-ENGKLFHG---KVIYVGRAQKKMERE 268
Query: 322 PEIMAHVKT------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ +T +++ + +++R YG + + R+ + K +GF+
Sbjct: 269 AELKHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFV 328
Query: 376 DFSTHEAAVACI 387
++T + A +
Sbjct: 329 CYTTPDEASKAV 340
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 16/286 (5%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI 178
D E+ A++ E L + ++ +++ +++G LD ++ + +F IG V
Sbjct: 3 DITEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVS 62
Query: 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL----- 233
+R+ ++ T + GYA+V F + + AK A+ ++ I GK C S+ + +L
Sbjct: 63 SIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGA 122
Query: 234 ---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
F+ N+ +A+ +G + + + +D G S+GF +V F A
Sbjct: 123 GNIFIKNLHPDIDNKALYDTFSVFG--NILSSKVATD--ETGKSKGFGYVHFEEDESASE 178
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKENQIRDQI 349
A L ++ E V ++ RE E M A+ V++ + + + + +
Sbjct: 179 AIDALN--GMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV 236
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+G +VL R + K +GF++F HE AV C+ +NN EF
Sbjct: 237 AKFGKTDSVVLERT-PEGENKGFGFVNFVNHEDAVKCVEELNNTEF 281
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 41/270 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L D + + F G ++ ++ + T ++KG+ +V F E A A+ +
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 213 KNPVICGKRCGTAP--------------SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ G+ P + +++ NI T + ++ + +G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFG--- 240
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ ++V + EG ++GF FV F H DA+ + L + G P + V A+
Sbjct: 241 -KTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFK-GQP---LYVNRAQKKY 295
Query: 319 EPDPEI-----------MAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E E+ MA + +F+ + + ++ ++ YG I A+ M+
Sbjct: 296 ERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGT---ITSAKVMT 352
Query: 366 T--AKRKDYGFIDFSTHEAAVACINAINNK 393
T K K +GF+ FST E A I N +
Sbjct: 353 TENGKSKGFGFVCFSTPEEATKAITEKNQQ 382
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 9/241 (3%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
+R+ K EIF+G L RD ++++ V E++G ++E+RL +FS + +GYAF +
Sbjct: 47 ERQRGKGSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLDFSGS-TRGYAFALYETPR 105
Query: 204 HAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
A+ A + I G R G S DN LF G + TK +L ++ + +I
Sbjct: 106 IAREACRRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKM-LDDITDI 164
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
L L+RGF FV F H A A ++L V E V A EP D
Sbjct: 165 YLYPSAHDRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDE 224
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
+IM V T+F+ + + +R + +V + L K + FI + +A
Sbjct: 225 DIMERVTTLFVRNLALDISQQNVRGIFHRHTNVPILKL------KKINHFAFIHYENRQA 278
Query: 383 A 383
A
Sbjct: 279 A 279
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 127/259 (49%), Gaps = 16/259 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + ++F +G+V +R+ ++ T ++ GYA+V F E ++A+ ++
Sbjct: 52 LYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDL 111
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + + +
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFG--KILSCKV 169
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D +G S+ F FV + A AA + + ++ E V ++ RE E
Sbjct: 170 ATD--EQGNSKCFGFVHYETAEAARAAIENVN--GMLLNDREVYVGKHVSKKDRESKFEE 225
Query: 325 M-AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M A+ V++ + + E ++R+ + YG + + L ++ + K K +GF++F +HEAA
Sbjct: 226 MKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAA 284
Query: 384 VACINAINNKEFSDGNSKV 402
V + +N+K+ + N V
Sbjct: 285 VKAVEELNDKDINGQNLYV 303
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 113/275 (41%), Gaps = 41/275 (14%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E IFI L + + F G+++ ++ + N +K + FV + E A+ A+
Sbjct: 137 EGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGN-SKCFGFVHYETAEAARAAI 195
Query: 210 TEMKNPVI------CGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYG 255
+ ++ GK E ++V NI +++E ++ + YG
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYG 255
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+ +++L D EG S+GF FV F H A+ A + L D+ + + V A+
Sbjct: 256 --KITSLHLEKD--AEGKSKGFGFVNFESHEAAVKAVEELNDKDI----NGQNLYVGRAQ 307
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLAR 362
RE E+ +T L+ + + N ++ ++ K +G I AR
Sbjct: 308 KKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGT---ITSAR 364
Query: 363 NMST--AKRKDYGFIDFSTHEAAVACINAINNKEF 395
M K K +GF+ FS+ E A I +N + F
Sbjct: 365 VMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMF 399
>gi|440491451|gb|ELQ74095.1| putative Nucleotide-binding, alpha-beta plait, RNA recognition
motif domain protein, partial [Trachipleistophora
hominis]
Length = 394
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT-E 211
IF+ G D+D T+ V + F +IG+V+ VR+ K+ T+ NKG+ +V+F+N + AK+ALT
Sbjct: 173 IFVKGFDKDVTELMVEEEFGKIGKVVNVRMPKDRDTSENKGFCYVEFSNAQSAKKALTYN 232
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
K + C T N LFV N+ T T + IK+ Y V+N+ L +D + E
Sbjct: 233 GKTLLDCQIVIDTPKKAGNFCLFVKNLPYTATVDDIKKVFAKY---NVKNVRLPTD-EDE 288
Query: 272 GLSRGFAFVMFSCHVD 287
+RGF F+ F+ D
Sbjct: 289 ERNRGFCFIEFNTEQD 304
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 132/300 (44%), Gaps = 26/300 (8%)
Query: 110 EHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRK 169
E+++E + E + + T E + D K +++G LD T+ + +
Sbjct: 38 ENNKENVTKESTETESKKETTQEKSSEASSGTPSDGNAPKNTSLYVGELDPSVTEAMLFE 97
Query: 170 VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229
+F +G V +R+ ++ T ++ GYA+V + N + ++AL E+ +I G+ C S+
Sbjct: 98 IFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEELNYSLIKGRACRIMWSQR 157
Query: 230 NDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281
+ +L F+ N+ +A+ +G ++ + G S+G+ FV
Sbjct: 158 DPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGT----ILSCKVALDEYGNSKGYGFVH 213
Query: 282 FSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDG 335
F+ A AA + L V GH + R+ E M A+ V++
Sbjct: 214 FASIDSANAAIEHVNGMLLNDKKVYVGH-------HVSRRDRQSKFEAMKANFTNVYIKN 266
Query: 336 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ P + + + +G + L ++ S K + +GF++F +HEAA ++ +N+ EF
Sbjct: 267 IDPEVTDEEFSGLFEKFGAITSFSLVKDES-GKPRGFGFVNFESHEAAQKAVDEMNDYEF 325
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 119/260 (45%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD ++ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G V + +
Sbjct: 114 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFG--NVLSCKV 171
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G S+G+ FV + + A +A K L V GH +R K+
Sbjct: 172 ATD--EMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKL---- 225
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E V++ + P +++ R+ +G+V VL R+ + + +GF+
Sbjct: 226 ------DEQKKQFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRD-EEGRSRGFGFV 278
Query: 376 DFSTHEAAVACINAINNKEF 395
+F THE A ++ +++ +F
Sbjct: 279 NFETHEEAQKAVDTLHDSDF 298
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 123/321 (38%), Gaps = 64/321 (19%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R+KGY FV + E A+ A+ +
Sbjct: 142 IFIKNLDDAIDNKALHDTFAAFGNVLSCKVATD-EMGRSKGYGFVHYETNEAAESAIKAV 200
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEA-IKQKLKDYGVEGVENI--------- 262
++ K+ ++VG+ + ++A + ++ K + V+NI
Sbjct: 201 NGMLLNDKK-----------VYVGHHVSKKDRQAKLDEQKKQFTNVYVKNIDPEANDDEF 249
Query: 263 --------NLVSDIQH---EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKV 311
N+ S + EG SRGF FV F H +A A L D R + V
Sbjct: 250 RELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSD----FKGRKLFV 305
Query: 312 AFAEPLREPDPEI-----------MAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRI 358
+ A+ E + E+ M+ + V ++ + + ++RD + +G +
Sbjct: 306 SRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSA 365
Query: 359 VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS--------- 409
+ R K +GF+ FS+ + A + +NNK V L R
Sbjct: 366 KVMRT-EGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQLESQ 424
Query: 410 ----NPMPKTQAVKGGMSGGF 426
N + QA GM G+
Sbjct: 425 IAQRNQIRMQQAAAAGMPAGY 445
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEP-----------ADEAETLEDERRELNAIAKDRKIKKEH--E 152
V++ H+E + A D + + A + E+E R AK K+ K
Sbjct: 278 VNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVN 337
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I L+ D E +R FE G + ++ + +KG+ FV F++ + A +A+ EM
Sbjct: 338 LYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRT-EGGTSKGFGFVCFSSPDEATKAVAEM 396
Query: 213 KNPVICGK 220
N ++ K
Sbjct: 397 NNKMMGSK 404
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S + L F+ N+ N+ +A+ +G +I
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-----SILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +E SRGF FV F H A A + + +R V V + ++ + E+
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + + E +++D +G++ + + R+ S + + +GF++F HE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL----EDERRELNAIAKDR--KI 147
D G +G V++ +H+E + A D M + L +R E + K R ++
Sbjct: 225 DSNGQSRGFG-FVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQM 283
Query: 148 KKEHE-------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K+E + +++ LD E +++VF G + ++ ++ +KG+ FV F+
Sbjct: 284 KQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFS 341
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ E A +A+TEM G+ GT P
Sbjct: 342 SPEEATKAVTEMN-----GRIVGTKP 362
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 74/356 (20%), Positives = 137/356 (38%), Gaps = 53/356 (14%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 17 DLHPDVTESMLYEMF----SPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 135 RRELNAIAKDRKIKKEHE-----------IFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
E+ + +I H IFI L+ + + F G ++ ++
Sbjct: 73 NFEV-IKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC--GTAPSEDNDTLFVGNICNT 241
N +R G+ FV F E A++A+ M ++ ++ G S +G
Sbjct: 132 YNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 242 WTKEAIK--------QKLKDYGVE--GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+T +K Q+L+D + ++++ ++ D G SRGF FV F H +A A
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD--SNGQSRGFGFVNFEKHEEAQKA 247
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI------MAHVKTVFLDGVPPHWK---- 341
+ +V + + V A+ E E+ M + GV + K
Sbjct: 248 VDHMNGKEV----SGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 342 ---ENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNK 393
+ ++++ YG I A+ M+ ++ K +GF+ FS+ E A + +N +
Sbjct: 304 SINDERLKEVFSTYGV---ITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 356
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 19/250 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++ G L D T+ + +VF IG V +R+ ++ T ++ GYA++ F N A+RAL +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S + L +V N+ +A+ +G + L
Sbjct: 110 NYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL 169
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
D G SRGF FV F A AA +L + E+TV VA + E +
Sbjct: 170 TPD----GKSRGFGFVHFESDESAEAAIAKLNGMQI----GEKTVYVAPFKKTAERNDGT 221
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
+ V++ +P W E +I+++ +G++ + + + K + + F++++ E A
Sbjct: 222 PKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAV---QTDPKGRRFAFVNYAEFEQAR 278
Query: 385 ACINAINNKE 394
A + ++ K+
Sbjct: 279 AAVEEMDGKD 288
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ L D +++K+FE G V V++ + ++G+ FV F+ E A +A+T+M
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 213 KNPVICGK 220
+I GK
Sbjct: 436 HLKLIGGK 443
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N E ++AL E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 197
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYK-----RLQKPDVVFGH----PERTVKVAFAE 315
+ G ++G+ FV F A AA + L V GH ER KV E
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV---E 254
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
L+ A+ V++ + E + D +G++ + L ++ + K + +GF+
Sbjct: 255 ALK-------ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFV 306
Query: 376 DFSTHEAAVACINAINNKEF 395
+++ HE A ++ +N+KE+
Sbjct: 307 NYANHECAQKAVDELNDKEY 326
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD + T+++ +F + GE+ + L K+ ++ +G+ FV +AN E A++A+ E+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
+ GK+ ++ LF+ N+ + E +K
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ +G + + +++D +G S+GF FV ++ +A A + + ++ G P
Sbjct: 382 AEFSAFGT--ITSAKIMTD--EQGKSKGFGFVCYTTPEEANKAVTEMNQ-RMLAGKP--- 433
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 434 LYVALAQ 440
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 130/289 (44%), Gaps = 19/289 (6%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHE---IFIGGLDRDATQEDVRKVFERIG 175
D ++ A++ E L+ E + + K E +++G LD ++ + +F IG
Sbjct: 3 DVTDKTAEQLEQLKIEEQTAPTTTESETPKVETSGASLYVGELDPSVSEALLYDIFSPIG 62
Query: 176 EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL-- 233
V +R+ ++ TN + GYA+V F + E ++A+ ++ +I GK C S+ + +L
Sbjct: 63 SVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRK 122
Query: 234 ------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
++ N+ +++ + +G + + + +D G+SRGF FV F D
Sbjct: 123 KGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKVATD--DNGVSRGFGFVHFENESD 178
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIR 346
A A + + ++ E V ++ R+ E+ A +++ + + +
Sbjct: 179 ARDAIEAVN--GMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFE 236
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
YG + VL ++ S K + +GFI+F H A ++ +N +F
Sbjct: 237 QLFSKYGKITSAVLEKD-SEGKLRGFGFINFEDHSTAARAVDELNESDF 284
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 39/203 (19%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E I++ +D + +QE+ ++F + G++ L K+ S + +G+ F
Sbjct: 205 KDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKD-SEGKLRGFGF 263
Query: 197 VKFANKEHAKRALTEMKNPVICG-------------------KRCGTAPSE-----DNDT 232
+ F + A RA+ E+ G K+ TA E
Sbjct: 264 INFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVN 323
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+ N+ ++ E +K + +G + ++ ++ D G SRGF FV FS +A A
Sbjct: 324 LFIKNLDDSIDDEKLKDEFAPFGT--ITSVKVMKD--EAGSSRGFGFVCFSTPEEATKAI 379
Query: 293 KRLQKPDVVFGHPERTVKVAFAE 315
+ +V G P + VA A+
Sbjct: 380 TE-KNQQLVAGKP---LYVAIAQ 398
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 108/268 (40%), Gaps = 37/268 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I+I L + + + F G ++ ++ + ++G+ FV F N+ A+ A+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 213 KNPVICGKRCGTA---PSEDNDT-----------LFVGNICNTWTKEAIKQKLKDYGVEG 258
++ + A +D + ++V NI ++E +Q YG
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYG--- 243
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + V + EG RGF F+ F H A A L + D +T+ V A+
Sbjct: 244 -KITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDF----RGQTLYVGRAQKKH 298
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMS 365
E E+ +T L+ + + N +++D+ +G + + + ++ +
Sbjct: 299 ERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEA 358
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNK 393
+ R +GF+ FST E A I N +
Sbjct: 359 GSSR-GFGFVCFSTPEEATKAITEKNQQ 385
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 23 SSKQKEPALVEV-AKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
S K ++ L EV AK +I Y + D + +EE E + K T V E+D +
Sbjct: 203 SKKDRQSKLEEVKAKFTNI------YVKNIDLETSQEEFEQLFSKYGKITSAV-LEKDSE 255
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL---------- 131
KL G F +++ +H A D++ E +TL
Sbjct: 256 GKLRGFGF----------------INFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHE 299
Query: 132 -EDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
+ E ++ A+ K+ K +FI LD E ++ F G + V++ K+
Sbjct: 300 RQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EA 358
Query: 189 NRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
++G+ FV F+ E A +A+TE ++ GK
Sbjct: 359 GSSRGFGFVCFSTPEEATKAITEKNQQLVAGK 390
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 19/250 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++ G L D T+ + +VF IG V +R+ ++ T ++ GYA++ F N A+RAL +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S + L +V N+ +A+ +G + L
Sbjct: 110 NYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL 169
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
D G SRGF FV F A AA +L + E+TV VA + E +
Sbjct: 170 TPD----GKSRGFGFVHFESDESAEAAIAKLNGMQI----GEKTVYVAPFKKTAERNDGT 221
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
+ V++ +P W E +I+++ +G++ + + + K + + F++++ E A
Sbjct: 222 PKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAV---QTDPKGRRFAFVNYAEFEQAR 278
Query: 385 ACINAINNKE 394
A + ++ K+
Sbjct: 279 AAVEEMDGKD 288
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ L D +++K+FE G V V++ + ++G+ FV F+ E A +A+T+M
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 213 KNPVICGK 220
+I GK
Sbjct: 436 HLKLIGGK 443
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 47 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 106
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ N +A+ +G NI
Sbjct: 107 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-----NILS 161
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E S+G+ FV + A A K L V GH +R K
Sbjct: 162 CKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 219
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + +++ R + +G++ L+ + K + +GF
Sbjct: 220 --------EMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQD-GKSRGFGF 270
Query: 375 IDFSTHEAAVACINAINNKEF 395
++++ HE+A A + +N KE
Sbjct: 271 VNYANHESAEAAVAEMNEKEV 291
>gi|429965807|gb|ELA47804.1| hypothetical protein VCUG_00765 [Vavraia culicis 'floridensis']
Length = 361
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT-E 211
+F+ G DR T+ V + F +IG+V+ VR+ K+ T+ NKG+ +V+F+N + AK+AL+
Sbjct: 140 VFVKGFDRSVTELMVEEEFGKIGKVVNVRMPKDRDTSENKGFCYVEFSNAQSAKKALSYN 199
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
K + C T N TLFV N+ T T E IK Y V+N+ L +D + E
Sbjct: 200 GKTLLDCTIVIDTPKKTGNFTLFVKNLPYTATVEDIKDVFSKY---NVKNVRLPAD-EDE 255
Query: 272 GLSRGFAFVMFSCHVD 287
+RGF FV F D
Sbjct: 256 ERNRGFCFVEFGNEQD 271
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
+F+ L AT ED++ VF + V VRL + RN+G+ FV+F N++ K+ L
Sbjct: 221 LFVKNLPYTATVEDIKDVFSKYN-VKNVRLPADEDEERNRGFCFVEFGNEQDMKKVL 276
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 24/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T+ + VF +G + +R+ ++ T + GYA+V + + E K+A+ E+
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 213 KNPVICGKRCGTAPSE--------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C SE + +F+ N+ +A+ + +G E ++
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG----EVLSC 167
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--- 321
+ G SRGF FV F DA A + V G ++V A + + D
Sbjct: 168 KVALDENGNSRGFGFVHFKEESDAKDAI------EAVNGMLMNGLEVYVAMHVPKKDRIS 221
Query: 322 --PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
E A+ +++ + + + YG+++ L ++ + K K +GF++F
Sbjct: 222 KLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVD 280
Query: 380 HEAAVACINAINNKEF 395
H AA + +N KEF
Sbjct: 281 HNAAAKAVEELNGKEF 296
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD E +++ F G + R+ ++ N +KG+ FV F++ E A +A+TE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKAMTEK 394
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 395 NQQIVAGKPLYVAIAQRKDV 414
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 50/328 (15%)
Query: 95 DYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIF 154
D+ S ED + + ++ + E A ET+++ ++E +A +F
Sbjct: 325 DFSSAEDLDKALQM--NGKKLMGVEVKLEKAKSKETMKENKKERDA----------RTLF 372
Query: 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214
+ L T++D+R+VFE +EVR+ N N ++G A+V+F + A +AL E +
Sbjct: 373 LKNLPYRITEDDIREVFEN---ALEVRIVMNKDGN-SRGMAYVEFKTEAEADKALEEKQG 428
Query: 215 PVICGKRC-----GTAPSEDND-----TLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ G ++N TL V N+ T+E +++ K V N
Sbjct: 429 TEIEGRAVVIDFTGEKSQQENQKGESTTLIVNNLSYAATEETLQEVFKKASSIRVPQNN- 487
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP-------- 316
+G +G+AFV F+ DA A L ++ RT+++ F+ P
Sbjct: 488 ------QGRPKGYAFVDFATAEDAKEALNSLNNTEI----EGRTIRLEFSSPSWQKGNTN 537
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
R KT+F+ G+ E +R+ +G RIV R+ T K +GF+D
Sbjct: 538 ARGGGGGFGQQSKTLFVRGLSEDTTEETLRESFEGSISA-RIVTDRD--TGSSKGFGFVD 594
Query: 377 FSTHEAAVACINAINNKEFSDGNSKVKL 404
FS+ E A A A+ + E DGN KV L
Sbjct: 595 FSSPEDAKAAKEAMEDGEI-DGN-KVTL 620
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ED+R +FE G V+EV L K+ T + +G F+K+A E A+RA+
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 101
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T++ +K+ YG VE
Sbjct: 102 LHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG--QVE 159
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV FS AMAA L + G ++ + V FA+P R
Sbjct: 160 DVYLMRDELKQ--SRGCGFVKFSHRDMAMAAINALNGIYTMRGC-DQPLTVRFADPKR 214
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 134 ERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
ER L A+ E+++F+G L++ AT+++V+++F G+V +V L ++ +++G
Sbjct: 123 ERERLGAV--------EYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD-ELKQSRG 173
Query: 194 YAFVKFANKEHAKRALTEM 212
FVKF++++ A A+ +
Sbjct: 174 CGFVKFSHRDMAMAAINAL 192
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 43 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKD-KRTGQQQGCCFIKYATSEEAERAI 99
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + E ++++ Y
Sbjct: 100 RALHNQYTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATEKEVKEIFSPY 155
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ + + GF+ FS + A+A INA+N
Sbjct: 156 GQVEDVYLMRD-ELKQSRGCGFVKFSHRDMAMAAINALN 193
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 19/244 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++ G L D + + +VF IG V +R+ ++ T ++ GYA++ F N A+RAL
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 212 MKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ I G+ C S + L +V N+ +A+ +G +
Sbjct: 110 LNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 169
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L D G SRGF FV F A AA +L + E+TV VA + +
Sbjct: 170 LTPD----GKSRGFGFVHFESDESAEAAIAKLNGMQI----GEKTVYVAQFKKTADRSDG 221
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+ V++ +PP W E +IR++ +G++ + + K + + F++F+ E A
Sbjct: 222 SPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAM---QTDPKGRRFAFVNFAEFEQA 278
Query: 384 VACI 387
A +
Sbjct: 279 RAAV 282
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L + T+ + ++F IG V +R+ ++ T ++ GYA+V + N A+RAL +
Sbjct: 43 LYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALEAL 102
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
K ICGK+ S + +L F+ NI + +A+ YG + + +
Sbjct: 103 KYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYG--QILSCKV 160
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV----VFGHP-----ERTVKVAFAE 315
+D G SRG+ FV F +A A + +F P ER +
Sbjct: 161 ATD--ETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSSTKLED 218
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
+ E +++ P +W E +++ +G++ +++ S + + FI
Sbjct: 219 GVDE-------KFTNLYVRNFPENWNEEILKENFSPFGEITSMMMK---SDPLGRKFAFI 268
Query: 376 DFSTHEAAVACINAINNKEFS 396
+++ + A A I +N K+FS
Sbjct: 269 NYAENSMAKAAIETMNGKDFS 289
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 47 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 106
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ N +A+ +G NI
Sbjct: 107 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-----NILS 161
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E S+G+ FV + A A K L V GH +R K
Sbjct: 162 CKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 219
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + +++ R + +G++ L+ + K + +GF
Sbjct: 220 --------EMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQD-GKSRGFGF 270
Query: 375 IDFSTHEAAVACINAINNKEF 395
++++ HE+A A + +N KE
Sbjct: 271 VNYANHESAEAAVAEMNEKEV 291
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 124/253 (49%), Gaps = 16/253 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + ++F +G+V +R+ ++ T ++ GYA+V F E ++A+ E+
Sbjct: 52 LYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEEL 111
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + + +
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFG--KILSCKV 169
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D +G S+ F FV + A AA + + ++ E V ++ RE E
Sbjct: 170 ATD--EQGNSKCFGFVHYETAEAAKAAIENVN--GMLLNDREVYVGKHVSKKDRESKFEE 225
Query: 325 M-AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M A+ V++ + + E ++R + YG + + L ++ + K K +GF++F +HEAA
Sbjct: 226 MKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAA 284
Query: 384 VACINAINNKEFS 396
V + +N+K+ +
Sbjct: 285 VKAVEELNDKDIN 297
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 113/275 (41%), Gaps = 41/275 (14%)
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
E IFI L + + F G+++ ++ + N +K + FV + E AK A+
Sbjct: 137 EGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGN-SKCFGFVHYETAEAAKAAI 195
Query: 210 TEMKNPVI------CGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYG 255
+ ++ GK E ++V NI +++E +++ + YG
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYG 255
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
+ +++L D EG S+GF FV F H A+ A + L D+ + + V A+
Sbjct: 256 --KITSLHLEKD--AEGKSKGFGFVNFESHEAAVKAVEELNDKDI----NGQKLYVGRAQ 307
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLAR 362
RE E+ + L+ + + N ++ ++ K +G I AR
Sbjct: 308 KKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGT---ITSAR 364
Query: 363 NMST--AKRKDYGFIDFSTHEAAVACINAINNKEF 395
M K K +GF+ FS+ E A I +N + F
Sbjct: 365 VMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMF 399
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+G L E ++K FE IG VI R+ T+R++GY +V F NK +A++A+ EM
Sbjct: 5 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 64
Query: 213 KN------PVIC-------------GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253
+ P+ C K+ G PSE +DTLF+GN+ ++AI +
Sbjct: 65 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 124
Query: 254 YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313
+G V ++ + + + E +GF +V FS DA A LQ + R V++ F
Sbjct: 125 HGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEYI----DNRPVRLDF 177
Query: 314 AEP 316
+ P
Sbjct: 178 SSP 180
>gi|340378651|ref|XP_003387841.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Amphimedon queenslandica]
Length = 409
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 30/254 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT-- 210
+FIGGL T+E + + R GEVI+ + K+ TNR +G+ F+ + + E +R L
Sbjct: 1 MFIGGLTLRTTKEMLEDYYCRWGEVIDSVVMKDPQTNRPRGFGFITYTSPESVERCLAEG 60
Query: 211 --EMKNPVICGKRC--------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
E+ ++ KR PS + +F+G + + TK+ +++ +G+ +
Sbjct: 61 PHEIDERIVETKRAVPREETRQEPEPSSKSKKMFIGGLTTSATKDKLERYYGQWGM--II 118
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH--PERTVKVAFAEPL- 317
+ +V+D Q SRGF FV ++ + ++K H ER V+ A P
Sbjct: 119 DAAVVTDPQTR-RSRGFGFVTYNSR-------ESVEKCLAAGPHYIDERLVETKKAVPRE 170
Query: 318 ---REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
+E DP + K VFL G+ + ++ + K G++ + L + K + +GF
Sbjct: 171 ETPKETDPS--SKSKKVFLGGLHLDTTKEELMEAAKHIGEIEEVSLIIDPERNKPRGFGF 228
Query: 375 IDFSTHEAAVACIN 388
I F+ +E+A N
Sbjct: 229 ITFTDYESAERLCN 242
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 96 YGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFI 155
Y S E C+ G H+ D+ + E A E+ R+E +K +K+ FI
Sbjct: 47 YTSPESVERCLAEGPHE----IDERIVE-TKRAVPREETRQEPEPSSKSKKM------FI 95
Query: 156 GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE---- 211
GGL AT++ + + + + G +I+ + + T R++G+ FV + ++E ++ L
Sbjct: 96 GGLTTSATKDKLERYYGQWGMIIDAAVVTDPQTRRSRGFGFVTYNSRESVEKCLAAGPHY 155
Query: 212 MKNPVICGKRC--------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ ++ K+ T PS + +F+G + TKE + + K G +E ++
Sbjct: 156 IDERLVETKKAVPREETPKETDPSSKSKKVFLGGLHLDTTKEELMEAAKHIG--EIEEVS 213
Query: 264 LVSDIQHEGLSRGFAFVMFS 283
L+ D + RGF F+ F+
Sbjct: 214 LIIDPERNK-PRGFGFITFT 232
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 96 YGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFI 155
Y S E C+ G H + D+ + E +A E+ +E + +K +K+ F+
Sbjct: 139 YNSRESVEKCLAAGPH----YIDERLVE-TKKAVPREETPKETDPSSKSKKV------FL 187
Query: 156 GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
GGL D T+E++ + + IGE+ EV L + N+ +G+ F+ F + E A+R +
Sbjct: 188 GGLHLDTTKEELMEAAKHIGEIEEVSLIIDPERNKPRGFGFITFTDYESAERLCNQ 243
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S + L F+ N+ N+ +A+ +G +I
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-----SILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +E SRGF FV F H A A + + +R V V + ++ + E+
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + + E +++D +G++ + + R+ S + + +GF++F HE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL----EDERRELNAIAKDR--KI 147
D G +G V++ +H+E + A D M + L +R E + K R ++
Sbjct: 225 DSNGQSRGFG-FVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQM 283
Query: 148 KKEHE-------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K+E + +++ LD E +++VF G + ++ ++ +KG+ FV F+
Sbjct: 284 KQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFS 341
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ E A +A+TEM G+ GT P
Sbjct: 342 SPEEATKAVTEMN-----GRIVGTKP 362
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 136/358 (37%), Gaps = 57/358 (15%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 17 DLHPDVTESMLYEMF----SPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 135 RRELNAIAKDRKIKKEHE-----------IFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
E+ + +I H IFI L+ + + F G ++ ++
Sbjct: 73 NFEVIK-GQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT--------------APSED 229
N +R G+ FV F E A++A+ M ++ ++ A +
Sbjct: 132 YNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
++V N+ ++ ++ +G ++++ ++ D G SRGF FV F H +A
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFG--NMQSVKVMRD--SNGQSRGFGFVNFEKHEEAQ 245
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI------MAHVKTVFLDGVPPHWK-- 341
A + +V + + V A+ E E+ M + GV + K
Sbjct: 246 KAVDHMNGKEV----SGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 342 -----ENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNK 393
+ ++++ YG I A+ M+ ++ K +GF+ FS+ E A + +N +
Sbjct: 302 DDSINDERLKEVFSTYGV---ITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 356
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S + L F+ N+ N+ +A+ +G +I
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-----SILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +E SRGF FV F H A A + + +R V V + ++ + E+
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + + E +++D +G++ + + R+ S + + +GF++F HE
Sbjct: 184 GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL----EDERRELNAIAKDR--KI 147
D G +G V++ +H+E + A D M + L +R E + K R ++
Sbjct: 225 DSNGQSRGFG-FVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQM 283
Query: 148 KKEHE-------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K+E + +++ LD E +++VF G + ++ ++ +KG+ FV F+
Sbjct: 284 KQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFS 341
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ E A +A+TEM G+ GT P
Sbjct: 342 SPEEATKAVTEMN-----GRIVGTKP 362
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 136/358 (37%), Gaps = 57/358 (15%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 17 DLHPDVTESMLYEMF----SPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 135 RRELNAIAKDRKIKKEHE-----------IFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
E+ + +I H IFI L+ + + F G ++ ++
Sbjct: 73 NFEVIK-GQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT--------------APSED 229
N +R G+ FV F E A++A+ M ++ ++ A +
Sbjct: 132 YNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
++V N+ ++ ++ +G ++++ ++ D G SRGF FV F H +A
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFG--NMQSVKVMRD--SNGQSRGFGFVNFEKHEEAQ 245
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI------MAHVKTVFLDGVPPHWK-- 341
A + +V + + V A+ E E+ M + GV + K
Sbjct: 246 KAVDHMNGKEV----SGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNL 301
Query: 342 -----ENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACINAINNK 393
+ ++++ YG I A+ M+ ++ K +GF+ FS+ E A + +N +
Sbjct: 302 DDSINDERLKEVFSTYGV---ITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 356
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N E ++AL E+
Sbjct: 68 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 127
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + ++
Sbjct: 128 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 183
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYK-----RLQKPDVVFGH----PERTVKVAFAE 315
+ G ++G+ FV F A AA + L V GH ER KV E
Sbjct: 184 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV---E 240
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
L+ A+ V++ + E + D +G++ + L ++ + K + +GF+
Sbjct: 241 ALK-------ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFV 292
Query: 376 DFSTHEAAVACINAINNKEF 395
+++ HE A ++ +N+KE+
Sbjct: 293 NYANHECAQKAVDELNDKEY 312
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD + T+++ +F + GE+ + L K+ ++ +G+ FV +AN E A++A+ E+
Sbjct: 249 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 307
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
+ GK+ ++ LF+ N+ + E +K
Sbjct: 308 NDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 367
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ +G + + +++D +G S+GF FV ++ +A A + + ++ G P
Sbjct: 368 AEFSAFGT--ITSAKIMTD--EQGKSKGFGFVCYTTPEEANKAVTEMNQ-RMLAGKP--- 419
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 420 LYVALAQ 426
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 51 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 111 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGT--VLSCKV 168
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G S+G+ FV + A A K L V GH ER K+
Sbjct: 169 ATD--ETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLE--- 223
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A +++ + P +++ + K YG+V V++ + K K +GF+
Sbjct: 224 -------EMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVD-EEGKSKGFGFV 275
Query: 376 DFSTHEAAVACINAINNKEF 395
+F TH+ A ++ +N+ E
Sbjct: 276 NFETHDEAQKAVDELNDFEL 295
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + T R+KGY FV + E A+ A+ +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVATD-ETGRSKGYGFVHYETAEAAENAIKAV 197
Query: 213 KNPVICGKRCGTA--------------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ L+V N+ T++ + K YG
Sbjct: 198 NGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYG--- 254
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ V + EG S+GF FV F H +A A L F + + V+ A+
Sbjct: 255 -NVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELND----FELKGKKLFVSRAQKKA 309
Query: 319 EPDPEIMAHVKTVFLD------GVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ + L+ GV + K ++++R + + +G + + R+
Sbjct: 310 EREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRD-E 368
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ + A + +NNK V L R
Sbjct: 369 KGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 410
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 93 LDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL-----------EDERRELNAI 141
+D+ G + +G V++ HDE + A D++ + + + L E+E R
Sbjct: 263 VDEEGKSKGFG-FVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQ 321
Query: 142 AKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF 199
AK K+ K ++I L+ D + +R FE G + ++ ++ ++KG+ FV F
Sbjct: 322 AKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRD-EKGQSKGFGFVCF 380
Query: 200 ANKEHAKRALTEMKNPVICGK 220
++ + A +A+ EM N +I K
Sbjct: 381 SSPDEATKAVAEMNNKMIGTK 401
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG--VEGVENINLVSDIQHEGLSRG 276
GK S N LFVGNI + K+ I L+++G G+ + + S + +RG
Sbjct: 13 GKCLKINISVPNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRG 69
Query: 277 FAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDG 335
F F+ + H A A +RL + V+G + V +A+P EPD + M+ VK +++
Sbjct: 70 FCFLEYESHKAASLAKRRLGTGRIKVWGC---DIIVDWADPQEEPDEQTMSKVKVLYVRN 126
Query: 336 VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ E+++++Q + YG V R+ K KDY FI F ++AV + +N KE
Sbjct: 127 LTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGKEI 178
Query: 396 SDGNSKVK--------------LRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFS 437
N +V LRAR M QA + G+ G H S + +
Sbjct: 179 GASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQA-RPGIVGNLSPTHPSIMSLT 233
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 123/244 (50%), Gaps = 16/244 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EI++ + + T+ D+ VFER G++ E+RL ++S N+N+ Y FV++ N+E AK A+
Sbjct: 108 EIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDYS-NQNRRYCFVRYTNEEDAKVAIEV 166
Query: 212 MKNPVICGKRCGTAP-SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI--NLVSDI 268
+ + + + A S + LFVGN+ ++ I+ + E + N +SD
Sbjct: 167 LNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHNRISDG 226
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+ ++RGFAF+ F H A+ A K Q +R +K+ +A P R D + V
Sbjct: 227 E---MNRGFAFMDFPDHAAALRAKK--QTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACI 387
K +F+ + +++ Y +R+V +++ R +++ F++F+ E A +
Sbjct: 282 KMLFVRNIDLKVGTSEL------YNLFVRLVPRQDIIKITRVREFAFVEFAKREQAEMVM 335
Query: 388 NAIN 391
+A+
Sbjct: 336 HAVQ 339
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + +RAL E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEEL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G N+
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-------NI 169
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFA 314
+S + G S+G+ FV + A A K L + V GH P++ F
Sbjct: 170 LSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFE 229
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + +++ R+ + YG + LA + K + +GF
Sbjct: 230 --------EMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHD-DQGKVRGFGF 280
Query: 375 IDFSTHEAAVACINAINNKEF 395
++F HE A ++ +N+ +F
Sbjct: 281 VNFIRHEDAAKAVDELNDLDF 301
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 25/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF---ANKEHAKRAL 209
+++G L++D T+ + ++F +G V +R+ ++ T R+ GYA+V + + + A+RA+
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 210 TEMKNPVICGK--------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261
+ V+ GK R +A +F+ N+ + +A+ +G + +
Sbjct: 83 ETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG--KILS 140
Query: 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL--RE 319
+ +D G+S+G+ FV F D AA + +Q E K+ + P R
Sbjct: 141 CKVATD--ANGVSKGYGFVHFE---DQAAADRAIQ----TVNQKEIEGKIVYVGPFQKRA 191
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P+ VF+ +P ++++ +G+V V+ ++ K +GFI+F
Sbjct: 192 DRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKD-EKGSSKGFGFINFKD 250
Query: 380 HEAAVACINAINNKEF 395
E A C+ A+N+KE
Sbjct: 251 AECAAKCVEALNDKEI 266
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 39/267 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G+++ ++ + + +KGY FV F ++ A RA+ +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 172
Query: 213 KNPVICGKRCGTAPSEDN----------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
I GK P + +FV N+ + + + ++G E
Sbjct: 173 NQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFG----EVT 228
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA-EPLREPD 321
+ V +G S+GF F+ F DA A K ++ E KV +A ++ +
Sbjct: 229 SAVVMKDEKGSSKGFGFINFK---DAECAAKCVE----ALNDKEIGGKVLYAGRAQKKTE 281
Query: 322 PEIMAHVKT---------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366
E M K +++ + ++ +RD G + + ++ S
Sbjct: 282 REAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTS- 340
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNK 393
K K +GF+ F++H+ A + +N K
Sbjct: 341 GKSKGFGFVCFTSHDEATRAVTEMNGK 367
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ L + + +R +F G + ++ K+ ++ ++KG+ FV F + + A RA+TEM
Sbjct: 306 LYVKNLADEVDDDALRDLFTSCGTITSCKVMKD-TSGKSKGFGFVCFTSHDEATRAVTEM 364
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 365 NGKMVKGKPLYVALAQRKDV 384
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 14/266 (5%)
Query: 137 ELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
E+NA A + +++G L D T+ + + F G V+ +R+ ++ T R+ GYA+
Sbjct: 17 EMNAAASSYPMA---SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAY 73
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKD 253
V F A+RAL M V+ GK S+ + +L + N + K ++I K
Sbjct: 74 VNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALY 133
Query: 254 YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313
NI + E S+G+AFV F AA K ++K + + + +R V V
Sbjct: 134 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGR 189
Query: 314 AEPLREPDPEIMAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370
+ +E + E+ A K V++ + +++ +G + + + R+ S+ K K
Sbjct: 190 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSK 248
Query: 371 DYGFIDFSTHEAAVACINAINNKEFS 396
+GF+ + HE A + +N KE S
Sbjct: 249 GFGFVSYEKHEDANKAVEEMNGKEMS 274
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 175
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ ++ G S +G +T IK LK+ + + +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KVAFAE 315
++ G S+GF FV + H DA A K + + G ++ V +
Sbjct: 236 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 295
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
+ E ++ + V ++ + + ++R + +G + + + + K +G
Sbjct: 296 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFG 353
Query: 374 FIDFSTHEAAVACINAINNK 393
F+ FS+ E A + +N +
Sbjct: 354 FVCFSSPEEATKAVTEMNGR 373
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 76
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 77 QQPADAERALDTMNF-DVMKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 128
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 129 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 182
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +R+ F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 313 LYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 370
Query: 213 KNPVICGK 220
++ K
Sbjct: 371 NGRIVGSK 378
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 124/266 (46%), Gaps = 21/266 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N A+RAL ++
Sbjct: 86 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 145
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I K C S+ + +L F+ N+ T +A+ +G + + +
Sbjct: 146 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG--DILSCKV 203
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-- 322
+D G S+G+ FV + A AA K + + ++ V V P R+
Sbjct: 204 ATD--EHGASKGYGFVHYVTGESAEAAIKGVNGMQLN----DKVVFVGIHVPRRDRQAKI 257
Query: 323 -EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ + +++ +P ++ + +G + + + K + +GF+++ HE
Sbjct: 258 DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFGFVNYENHE 316
Query: 382 AAVACINAINNKEFSDGNSKVKLRAR 407
+A ++A+++K++ GN RA+
Sbjct: 317 SASKAVDALHDKDY-KGNVLYVARAQ 341
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 276 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 333 I----DNRPVRLDFSSP 345
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 158 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 217
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 278 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 334
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 335 I----DNRPVRLDFSSP 347
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 160 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 219
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 220 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 279
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 280 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 336
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 337 I----DNRPVRLDFSSP 349
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 158 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 217
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 278 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 334
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 335 I----DNRPVRLDFSSP 347
>gi|255647325|gb|ACU24129.1| unknown [Glycine max]
Length = 78
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 571 VKRSFHVMDHEPDYMGPRRFRPRLDYNDPVIPFHGSHHHDNVGACSNHYSDDYHVPNYGA 630
+KR F++ D EPDYMGP R RPRLDY DP I F G+HHHD+ GA S Y DY+ +YG
Sbjct: 1 MKRPFYMTDPEPDYMGPTRLRPRLDYADPPI-FPGTHHHDSFGAGSRQYPPDYYGSDYGR 59
Query: 631 HPPYPPYYGDDRLYGGGYFY 650
Y YYG D +G GY+Y
Sbjct: 60 G-SYSSYYGGDGSHGHGYYY 78
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 276 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 333 I----DNRPVRLDFSSP 345
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 19/248 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD D T+ + ++F + V VR+ ++ T R+ GYA+V + + A+RAL +
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 213 KNPVICGKRCGT-------APSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C A +ND +FV N+ + + + +G + + +
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFG--NIMSCKI 131
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D+ EG S G+ F+ F A A RL V G +R + V + E E
Sbjct: 132 ATDV--EGKSLGYGFIHFEHADSAKEAISRLN--GAVLG--DRPIYVGKFQKKAERFSEK 185
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
V++ +P W E+ + YG + +VL S +K + +GF++F ++A
Sbjct: 186 DKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVL---QSDSKGRPFGFVNFENPDSAK 242
Query: 385 ACINAINN 392
A + A++N
Sbjct: 243 AAVAALHN 250
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 136 RELNAIAKDRKIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
R++ ++ +K+ H+ +++ L +ED+R +FE G V V + K +
Sbjct: 342 RQVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSI-KTDESG 400
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
++G+ FV F + + A +A+TEM ++ GK
Sbjct: 401 VSRGFGFVSFLSPDEATKAITEMHLKLVRGK 431
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +R+ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +++ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAANKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 36/287 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LDR T+ + ++F +IG ++ N Y FV+F HA AL M
Sbjct: 16 LYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEH--GGNDPYCFVEFVEHSHAAAALQTM 73
Query: 213 KNPVICGKRC----GTAPSE-DNDT-----LFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
+I GK T PS DT +FVG++ + +K +G + +
Sbjct: 74 NGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPFG--QISDA 131
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
+V D+Q S+G+ FV F VDA A + + + G RT A +P P
Sbjct: 132 RVVKDLQTNK-SKGYGFVSFLNKVDAENAIQGMNG-QWLSGRAIRT-NWATRKPPPPRQP 188
Query: 323 EIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E + TV++ GV E ++R+ YG + + + +
Sbjct: 189 ETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIFPD------ 242
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQ 416
K Y FI F THE+A I ++N + + K S+P+ + Q
Sbjct: 243 KGYAFIRFMTHESAAHAIVSVNGSQINGHMVKCSWGKESSDPLYQAQ 289
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 106 VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKE----HEIFIGGLDRD 161
V++ EH A M + + ++N +KK+ H +F+G L +
Sbjct: 58 VEFVEHSHAAAALQTMN-----GRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSE 112
Query: 162 ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221
D++ F G++ + R+ K+ TN++KGY FV F NK A+ A+ M + G+
Sbjct: 113 VDTPDLKAAFAPFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRA 172
Query: 222 CGT--------------------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYG 255
T + S N T+++G + T+ +++ YG
Sbjct: 173 IRTNWATRKPPPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYG 232
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
++ + + D +G+AF+ F H A A
Sbjct: 233 --HIQEVRIFPD-------KGYAFIRFMTHESAAHA 259
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 123/244 (50%), Gaps = 16/244 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EI++ + + T+ D+ VFER G++ E+RL ++S N+N+ Y FV++ N+E AK A+
Sbjct: 108 EIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDYS-NQNRRYCFVRYTNEEDAKVAIEV 166
Query: 212 MKNPVICGKRCGTAP-SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI--NLVSDI 268
+ + + + A S + LFVGN+ ++ I+ + E + N +SD
Sbjct: 167 LNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHNRISDG 226
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
+ ++RGFAF+ F H A+ A K Q +R +K+ +A P R D + V
Sbjct: 227 E---MNRGFAFMDFPDHAAALRAKK--QTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACI 387
K +F+ + +++ Y +R+V +++ R +++ F++F+ E A +
Sbjct: 282 KMLFVRNIDLKVGTSEL------YNLFVRLVPRQDIIKITRVREFAFVEFAKREQAEMVM 335
Query: 388 NAIN 391
+A+
Sbjct: 336 HAVQ 339
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 33/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + + ++F +G V +R+ ++ T R+ GYA+V F N E ++RAL ++
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 213 KNPVICGKRCGTAPSE--------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S+ +F+ N+ +A+ +G I
Sbjct: 142 NYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFG-----KILS 196
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+E S G+ FV + + A AA K L V GH +R K+
Sbjct: 197 CKVASNEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIE--- 253
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E AH V++ + P + + + YG + +A + K + +GF+
Sbjct: 254 -------EARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQE-GKSRGFGFV 305
Query: 376 DFSTHEAAVACINAINNKEF 395
+FS HE A + +N+ EF
Sbjct: 306 NFSEHEQAAKAVEELNDTEF 325
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 117/280 (41%), Gaps = 34/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G+++ ++ N + + GY FV + + + A+ A+ +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASN--EHGSLGYGFVHYESNDAAEAAIKHV 227
Query: 213 KNPVICGKRCGT----------APSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ A E+ ++V N+ T+E ++ + YG
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYG--K 285
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD-----VVFGHPERTVKVAF 313
+ + + +D EG SRGF FV FS H A A + L + + G ++ K
Sbjct: 286 ITSAAIATD--QEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQK--KSER 341
Query: 314 AEPLR----EPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
E LR E ++ + V ++ +P + + +++++ +G + R + A
Sbjct: 342 EEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGA 401
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
R +GF+ +S E A + +N K + V L R
Sbjct: 402 SR-GFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQR 440
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 19/248 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD D T+ + ++F + V VR+ ++ T R+ GYA+V + + A+RAL +
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 213 KNPVICGKRCGT-------APSEDND-TLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C A +ND +FV N+ + + + +G + + +
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFG--NIMSCKI 131
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D+ EG S G+ F+ F A A RL V G +R + V + E E
Sbjct: 132 ATDV--EGKSLGYGFIHFEHADSAKEAISRLN--GAVLG--DRPIYVGKFQKKAERFSEK 185
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
V++ +P W E+ + YG + +VL S +K + +GF++F ++A
Sbjct: 186 DKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVL---QSDSKGRPFGFVNFENPDSAK 242
Query: 385 ACINAINN 392
A + A++N
Sbjct: 243 AAVAALHN 250
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 22 DSSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
DS+K AL HN ++ + + T E P VD++ ++ K+E +
Sbjct: 239 DSAKAAVAAL-----HNALVTPVGVELDSTAETP-------VDNEAGADSETSSKQESGE 286
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDME---EPADEAETLEDERREL 138
+ N + S + G + +E+ AD ++ +P + ++ E
Sbjct: 287 A----SNKKQTASGEASKDSSGTSNEESAQNEDGSADKNVSADVQPNRLYVSRAQKKNER 342
Query: 139 NAIAKDR--KIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
+ K + +K+ H+ +++ L +ED+R +FE G V V + K +
Sbjct: 343 QVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSI-KTDESGV 401
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVICGK 220
++G+ FV F + + A +A+TEM ++ GK
Sbjct: 402 SRGFGFVSFLSPDEATKAITEMHLKLVRGK 431
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQ---EAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +R+ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEMS 257
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +++ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAANKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|32482385|gb|AAP84382.1| FCA protein [Triticum aestivum]
Length = 700
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 106 KLFVGSAPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 165
Query: 212 MKN----PVICGK---RCGTAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N P G RC E + + LFV ++ T + I++ +G VE
Sbjct: 166 LHNQCTIPGAMGPVQVRCADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 223
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 224 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 278
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 137 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRCADGEKERHGSIEH 196
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 197 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 255
Query: 212 MKNPVI 217
+ I
Sbjct: 256 LSGTYI 261
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A++ED+R +FE+ G VIEV L K+ T + +G FVK+A E A RA+
Sbjct: 162 KLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKYATSEEADRAIRA 221
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T++ +++ YG VE
Sbjct: 222 LHNQHTLPGGIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG--HVE 279
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV +S A+AA L + G ++ + V FA+P R
Sbjct: 280 DVYLMRDEMKQ--SRGCGFVKYSSREMALAAINALNGIYKMRGC-DQPLTVRFADPKR 334
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T ++E I+ + +G V + L+ D + G +G FV ++ +A A
Sbjct: 163 LFVGSVPRTASEEDIRPLFEQHG--NVIEVALIKD-KRTGQQQGCCFVKYATSEEADRAI 219
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V FA+ RE + A +F+ + E ++ + Y
Sbjct: 220 RALHNQHTLPGG-IGPIQVRFADGERE---RLGAVEYKLFVGSLNKQATEKEVEEIFSPY 275
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ + + GF+ +S+ E A+A INA+N
Sbjct: 276 GHVEDVYLMRD-EMKQSRGCGFVKYSSREMALAAINALN 313
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 134 ERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
ER L A+ E+++F+G L++ AT+++V ++F G V +V L ++ +++G
Sbjct: 243 ERERLGAV--------EYKLFVGSLNKQATEKEVEEIFSPYGHVEDVYLMRD-EMKQSRG 293
Query: 194 YAFVKFANKEHAKRALTEM 212
FVK++++E A A+ +
Sbjct: 294 CGFVKYSSREMALAAINAL 312
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +R+ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +++ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAANKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 19/246 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L +AT+ + F + G V+ +R+ ++ T R+ GYA+V F E A+RA+ M
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG 272
+ S T C T A L N+NL G
Sbjct: 73 NFIQLSVNLASAISSSKTWTRLSTTKCCTIPFSAFGNIL-----SCKVNVNLA------G 121
Query: 273 LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF---AEPLREPDPEIMAHVK 329
S+G+ FV F AA K ++K D + + ++ F E +RE +
Sbjct: 122 ESKGYGFVHFETE---EAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYG-DRAKQFT 177
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
VF+ +P W + ++ + +G V+ + LA + K + +GF+ F THE A +
Sbjct: 178 NVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFETHECAEKVVEK 236
Query: 390 INNKEF 395
+++KEF
Sbjct: 237 LHDKEF 242
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+++ LD T + +R+ F G + +V + R+KG+ FV F + E A +A+T
Sbjct: 282 LYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVT 341
Query: 211 EMKNPVICGKRCGTAPSEDND 231
EM +I K A ++ D
Sbjct: 342 EMNGRIIASKPLYVALAQRKD 362
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +R+ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +++ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAANKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 126/261 (48%), Gaps = 13/261 (4%)
Query: 152 EIFIGGLDRDATQEDVRKVF-ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
E+++GG+ D + ED++++ V VR+ + +R GYAFV F K A + +
Sbjct: 167 EVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMMRGKDDSR--GYAFVNFRTKGLALKVVK 224
Query: 211 EMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
E+ N + + S+ + LF+GN+ ++WT + ++ +++ G GV +L+ +
Sbjct: 225 ELNNAKL-KVWIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG-PGVLKADLM-KVSS 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKT 330
+RG+ FV + H A A Y R + F V++A+P VK+
Sbjct: 282 ANRNRGYGFVEYYNH--ACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVVKS 339
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
V++ +P + + Q++ + +G++ ++VL + + YGF+ F A + A+
Sbjct: 340 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMA---MRAL 395
Query: 391 NNKEFSDGNSKVKLRARLSNP 411
N E + + +V L L+ P
Sbjct: 396 QNTERYELDGQV-LDCSLAKP 415
>gi|147853770|emb|CAN79549.1| hypothetical protein VITISV_022646 [Vitis vinifera]
Length = 798
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224
E + VF GE+IEVR+ + ++KGY FV+F KE A +A+ E ++ GK+ G
Sbjct: 144 EALDPVFSTCGEIIEVRMMTD-QNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGV 202
Query: 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV-------SDIQHEGLSRGF 277
PS D TLF GN+ W+ + K+ + V +++L + + + +RGF
Sbjct: 203 VPSTDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGF 261
Query: 278 AFVMFSCH 285
AFV FS H
Sbjct: 262 AFVKFSSH 269
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 16/288 (5%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI 178
D E+ ++ E L+ E +++G LD ++ + +F IG V
Sbjct: 3 DITEKTVEQLENLKISESEDQPSTTTSTETSPASLYVGELDPTVSEALLYDIFSPIGSVS 62
Query: 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL----- 233
+R+ ++ T + GYA+V F + E K+A+ ++ I G+ C S+ + L
Sbjct: 63 SIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMWSQRDPALRKKGS 122
Query: 234 ---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
F+ N+ +A+ + +G + + + +D G S+GF FV F A
Sbjct: 123 GNIFIKNLHPDIDNKALFETFSVFG--NILSSKIATD--ETGKSKGFGFVHFEHESSAKE 178
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQI 349
A L ++ E V R+ E AH V++ + + + +
Sbjct: 179 AIDALN--GMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELF 236
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
YG+V+ L + K K +GF+DF HE A + +N EF D
Sbjct: 237 AKYGNVLSSSLEKT-EDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKD 283
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 41/270 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L D + + + F G ++ ++ + T ++KG+ FV F ++ AK A+ +
Sbjct: 125 IFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHESSAKEAIDAL 183
Query: 213 KNPVICGKRCGTAP--------SEDNDT------LFVGNICNTWTKEAIKQKLKDYGVEG 258
++ G+ AP S+ +T ++V NI T E + YG
Sbjct: 184 NGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKYG--- 240
Query: 259 VENINLVSDIQ--HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
N+ L S ++ +G +GF FV F H DA A + L + ++T+ V+ A+
Sbjct: 241 --NV-LSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTE----FKDQTLFVSRAQK 293
Query: 317 LREPDPEI-----------MAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 363
E E+ MA + V F+ + + +++++ YG + + + R
Sbjct: 294 KYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRT 353
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNK 393
K K +GF+ FST E A I N +
Sbjct: 354 -DNGKSKGFGFVCFSTPEEATKAITEKNQQ 382
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 74 VDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDM--EEPADEAETL 131
++K ED K K G D+ +ED V+ E + EF D + + E +
Sbjct: 247 LEKTEDGKLKGFG------FVDFEKHEDAAKAVE--ELNGTEFKDQTLFVSRAQKKYERM 298
Query: 132 EDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
++ +++ A ++ K + +F+ LD E +++ F G + VR+ + +
Sbjct: 299 QELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRT-DNGK 357
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
+KG+ FV F+ E A +A+TE ++ GK A ++ D
Sbjct: 358 SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV 399
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 124/266 (46%), Gaps = 21/266 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N A+RAL ++
Sbjct: 175 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 234
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I K C S+ + +L F+ N+ T +A+ +G + + +
Sbjct: 235 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG--DILSCKV 292
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-- 322
+D G S+G+ FV + A AA K + + ++ V V P R+
Sbjct: 293 ATD--EHGASKGYGFVHYVTGESAEAAIKGVNGMQLN----DKVVFVGIHVPRRDRQAKI 346
Query: 323 -EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ + +++ +P ++ + +G + + + K + +GF+++ HE
Sbjct: 347 DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFGFVNYENHE 405
Query: 382 AAVACINAINNKEFSDGNSKVKLRAR 407
+A ++A+++K++ GN RA+
Sbjct: 406 SASKAVDALHDKDY-KGNVLYVARAQ 430
>gi|218187131|gb|EEC69558.1| hypothetical protein OsI_38856 [Oryza sativa Indica Group]
Length = 560
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 11/125 (8%)
Query: 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203
DR++K E+F+GGL R T+ +R+VF GE++++R+ K+ +KGY FV+FA +E
Sbjct: 402 DRRVKG-AEVFVGGLPRSVTERALREVFSPCGEIVDLRIMKD-QNGISKGYGFVRFAERE 459
Query: 204 H---AKRALTEMKNPV------ICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDY 254
AKR + + + + GKR S D DTLF GN+C W E ++ ++
Sbjct: 460 CAYIAKRQINGFEARISNFLFDLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKS 519
Query: 255 GVEGV 259
+E V
Sbjct: 520 MLEDV 524
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 112/258 (43%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD + T + VF ++G+V+ VR+ ++ +T R+ GY +V + + + A RAL
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 210 --TEMKNP---VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
T N ++ R + +F+ N+ T +A+ +G + + +
Sbjct: 99 NFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFG--NILSCKV 156
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLRE 319
+D G SRG+ FV F A A + L V GH R E
Sbjct: 157 ATD--SSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRK---------HE 205
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
D V++ + E +++ YG++ V+ R+ + K K +GF++F
Sbjct: 206 RDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRD-ADGKSKCFGFVNFEN 264
Query: 380 HEAAVACINAINNKEFSD 397
+AA + ++N K+ D
Sbjct: 265 TDAAAKAVESLNGKKIDD 282
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 134/318 (42%), Gaps = 41/318 (12%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K IFI LD+ + + F G ++ ++ + S+ +++GY FV+F
Sbjct: 115 RDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFD 173
Query: 201 NKEHAKRALTEMKNPVICGKRC-----------GTAPSEDNDTLFVGNICNTWTKEAIKQ 249
N+E A+ A+ ++ ++ K+ +A ++ + ++V N+ + T+E +K
Sbjct: 174 NEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKN 233
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY------KRLQKPDVVFG 303
+YG E + V +G S+ F FV F + DA A K++ + G
Sbjct: 234 IFGEYG----EITSAVIMRDADGKSKCFGFVNFE-NTDAAAKAVESLNGKKIDDKEWYVG 288
Query: 304 HPERT------VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
++ +K F + ++E + +++ + + +++ +G +
Sbjct: 289 KAQKKSERELELKSQFEQSMKEAVDKYQG--VNLYIKNLDDSISDENLKELFSDFGMITS 346
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL-------RARLSN 410
+ R+ S R GF+ FST E A + +N K V L RARL
Sbjct: 347 CKVMRDPSGISRGS-GFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQA 405
Query: 411 PMPKTQAVKGGMSGGFRI 428
+ + V S G R+
Sbjct: 406 QFSQMRPVAMAPSVGPRM 423
>gi|32482100|gb|AAP84402.1| FCA protein [Triticum aestivum]
Length = 736
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFENHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 150 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 209
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 210 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 268
Query: 212 MKNPVI 217
+ I
Sbjct: 269 LSGTYI 274
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFENHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ + SRGF FV F H A A + + +R V V + RE + E+
Sbjct: 128 CKVVCDDHGSRGFGFVHFETHEAAQQAISTMNGMLL----NDRKVFVGHFKSRREREAEL 183
Query: 325 MAHVKT---VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P H E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSR-GFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N + S
Sbjct: 243 EAQKAVMDMNGMQVS 257
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 31/236 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIGGL + T + +R+ FE+ G + + + ++ T R++G+ FV ++ E +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTYSCVEEGH----D 91
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
K P E LF+G + T +++++ + +G + + ++ D Q +
Sbjct: 92 PKEP------------EQLRKLFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK 137
Query: 272 GLSRGFAFVMFSC--HVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAH-- 327
SRGF FV +SC VDA A R K D P+R V RE + AH
Sbjct: 138 -RSRGFGFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVS-------REDSVKPGAHLT 188
Query: 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
VK +F+ G+ +E +RD + YG + I + + + K++ + F+ F H+
Sbjct: 189 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 244
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT- 210
++FIGGL + T + +R+ FE+ G + + + ++ T R++G+ FV ++ E A+
Sbjct: 100 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 159
Query: 211 ---EMKNPVICGKRCGTAPSEDN---------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ V+ KR ED+ +FVG I + ++ + YG
Sbjct: 160 RPHKVDGRVVEPKR--AVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--K 215
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCH--VDAMAAYK 293
+E I ++ D Q G RGFAFV F H VD + K
Sbjct: 216 IETIEVMEDRQ-SGKKRGFAFVTFDDHDTVDKIVVQK 251
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+IF+GG+ D + ++R FE+ G++ + + ++ + + +G+AFV F + + + + +
Sbjct: 191 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 250
Query: 212 MKNPVICGKRC 222
K I G C
Sbjct: 251 -KYHTINGHNC 260
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 116/263 (44%), Gaps = 20/263 (7%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
+I +++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N
Sbjct: 39 QITPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 98
Query: 206 KRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVE 257
+RAL ++ +I G+ C S+ + L F+ N+ +A+ +G
Sbjct: 99 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-- 156
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVA 312
V + + +D G S+G+ FV + A A K L V GH + A
Sbjct: 157 NVLSCKVATD--EHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGH--HISRKA 212
Query: 313 FAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY 372
+ + E+ A +++ + P ++ + +G+V V+ + + + +
Sbjct: 213 SSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTD-EQGQSRGF 271
Query: 373 GFIDFSTHEAAVACINAINNKEF 395
GF++F THE A + +++ E+
Sbjct: 272 GFVNFETHEEAQKAVETLHDSEY 294
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 46/317 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R+KGY FV + E A+ A+ +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAAETAIKAV 192
Query: 213 KNPVICGKRC--------GTAPSEDNDTL--FVGNICNTWTKEAIKQKLKDYGVEGVENI 262
++ K+ + E L N + K + +D V+ E
Sbjct: 193 NGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQF 252
Query: 263 -NLVSDIQH---EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
N+ S + +G SRGF FV F H +A A + L + + R + V+ A+
Sbjct: 253 GNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSE----YHGRKLFVSRAQKKA 308
Query: 319 EPDPEI-----MAHVK--------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ A V+ +++ + + ++R + + +G + + R+
Sbjct: 309 EREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRD-E 367
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLS-------------NPM 412
K +GF+ FS+ + A + +NNK V L R N +
Sbjct: 368 KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQI 427
Query: 413 PKTQAVKGGMSGGFRIG 429
QA G+ GG+ G
Sbjct: 428 RMQQAAAAGIPGGYLNG 444
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 132 EDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
E+E R+ AK K+ K ++I L+ D E +R+ FE G + ++ ++
Sbjct: 311 EEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRD-EKG 369
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
+KG+ FV F++ + A +A+ EM N +I K
Sbjct: 370 TSKGFGFVCFSSPDEATKAVAEMNNKMIGSK 400
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F R G ++ +R+ ++ T R+ YA+V F + + A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L VGNI ++I K+ V NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETH---EAAERAIEKMNGTLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLG-------ENFQSELDDYGS 98
Y + ED ++E L+++ K P +V V +E KSK G E+ Q +D+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGG 157
E G + G ++ E + +R+ + +DR + + +++
Sbjct: 254 KELNGKHIYVGRAQKK-------------VERQTELKRKFEQMKQDRITRYQVVNLYVKN 300
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
LD D E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++
Sbjct: 301 LDDDIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 218 CGK 220
K
Sbjct: 359 ATK 361
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD+ + + G ++ ++ + N +KGY FV F E A+RA+ +M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K +G
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFG--P 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV---- 309
++ +++D G S+GF FV F H DA A K L + G ++ V
Sbjct: 217 ALSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQT 274
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E +++ D V +++ + + ++R +G + + M
Sbjct: 275 ELKRKF-EQMKQ-DRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVM--MEGG 330
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ E A + +N + + V L R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+ PS +L+VG++ T+ + +K G + +I + D+ S +A+V F
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSRAG--PILSIRVCRDVITRR-SSSYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 HPKDAERALDTMNF-DVIKGKPVRIM-------WSQRDPSLRRSGVGNIFVKNLDKSINN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D + +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 113 KVLYDTVSAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGTLLND 165
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+G L E ++K FE IG V+ R+ T+R++GY +V F +K +A++A+ EM
Sbjct: 173 IFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEM 232
Query: 213 KNPVICG-------------------KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253
+ I G K+ G PSE +DTLF+GN+ K+ I +
Sbjct: 233 QGKEIDGRPINVDMSTSKPAGGNDRAKKFGDVPSEPSDTLFLGNLSFNADKDNIYETFSK 292
Query: 254 YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313
YG + ++ + + + E +GF +V FS DA A + LQ + R V++ +
Sbjct: 293 YGE--IISVRIPTHPETE-QPKGFGYVQFSNIEDAKKALEGLQGEYI----DNRAVRLDY 345
Query: 314 AEPLREPDPE 323
+ P R +PE
Sbjct: 346 STP-RPANPE 354
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 174 IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL 233
IG V +R+ ++ T R+ GYA+V F N +RAL ++ I GK C S+ + L
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 234 FVGNICNTWTK---EAIKQK-LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
++ N + K E+I K L D ++ + GLS+G+ FV + A
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIR 346
AA + + ++ ++ V V P RE E+ ++ +++ G+ P E +
Sbjct: 122 AAIQAVN--GMLLN--DKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFS 177
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE 394
+ YG V VL + K K +GF++F+ HEAA + +++ E
Sbjct: 178 ELFAKYGQVTSAVLQVD-QDGKSKGFGFVNFADHEAAAKALTELHDSE 224
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + +KGY FV + E A+ A+ +
Sbjct: 69 IFIKNLDESIDNKALHDTFAAFGNILSCKVALD-ENGLSKGYGFVHYEGGEAAEAAIQAV 127
Query: 213 KNPVICGKRCGT---APSEDNDT-----------LFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K P + L+V + ++ + YG
Sbjct: 128 NGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYG--- 184
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + V + +G S+GF FV F+ H A A L + H +T+ V+ A+
Sbjct: 185 -QVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSE----HKGQTLYVSRAQKKG 239
Query: 319 EPDPEI------MAHVKTVFLDGVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ + K++ GV + K E ++ + +G + + R+
Sbjct: 240 EREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEK 299
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
A K +GF+ FS+ + A + +N K F V L R
Sbjct: 300 GAS-KGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQR 340
>gi|318086976|gb|ADV40080.1| putative RNA-binding protein musashi [Latrodectus hesperus]
Length = 298
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 24/229 (10%)
Query: 94 DDYGSYEDYGDCVDYGE--HDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
D+Y S E +C DYG +DE++ ++ D+E+ N +++
Sbjct: 5 DNYTSEEQ--NCGDYGTDFNDEQQQSNGDVEDQGGAGAD--------NTSTSKSSSEEDK 54
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL-- 209
++FIGG+ R+ Q+D+++ F + GEV EV + + ++ R++G+AFV FA+++ L
Sbjct: 55 KLFIGGISRETNQKDLKEYFSKFGEVTEVNIKTDPTSGRSRGFAFVAFASRDSVDSVLHN 114
Query: 210 --TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
+K I KR P +FVG I + T+ I+ + YG VE + L D
Sbjct: 115 GPHNIKGKQIEAKRAKVRPGIKK--IFVGGIESDMTEADIRNYFEHYG--KVEAVELPFD 170
Query: 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+ + R F FV F D M + ++P G+ E VK A +P
Sbjct: 171 -KVKNQRRQFCFVTFE---DEMTVDQVCKQPKQKIGNKECDVKKATTKP 215
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G I ++ +K+ +G V +N+ +D G SRGFAFV F+ D++
Sbjct: 56 LFIGGISRETNQKDLKEYFSKFGE--VTEVNIKTD-PTSGRSRGFAFVAFASR-DSV--- 108
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
D V + +K E R ++ +K +F+ G+ E IR+ + Y
Sbjct: 109 ------DSVLHNGPHNIKGKQIEAKR---AKVRPGIKKIFVGGIESDMTEADIRNYFEHY 159
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412
G V + L + +R+ + F+ F E + + GN + ++ + P
Sbjct: 160 GKVEAVELPFDKVKNQRRQFCFVTF---EDEMTVDQVCKQPKQKIGNKECDVKKATTKPD 216
Query: 413 PK 414
P+
Sbjct: 217 PR 218
>gi|32482388|gb|AAP84383.1| FCA protein [Triticum aestivum]
Length = 710
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEYHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 150 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 209
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 210 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 268
Query: 212 MKNPVI 217
+ I
Sbjct: 269 LSGTYI 274
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEYHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana]
Length = 533
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|32482104|gb|AAP84404.1| FCA protein [Triticum aestivum]
Length = 738
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 122 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 181
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 182 LHNQCTIPGAMGPVQVRYTDGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 239
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 240 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 294
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 153 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYTDGEKERHGSIEH 212
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 213 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 271
Query: 212 MKNPVI 217
+ I
Sbjct: 272 LSGTYI 277
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 123 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 182
Query: 391 NNK 393
+N+
Sbjct: 183 HNQ 185
>gi|414588979|tpg|DAA39550.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 708
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+EDVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIRG 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 183 LHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+ A L + G E+ + + FA+P R
Sbjct: 241 DVYIMRDSVKQ--SRGCGFVKFSSKEAAVEAMNALSGTYTMRGC-EQPLIIRFADPKR 295
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + ++ S +++G FVKF++K
Sbjct: 205 RERHGAIEHKLFVASLNKQATPKEIEEIFAPYGHVEDVYIMRD-SVKQSRGCGFVKFSSK 263
Query: 203 EHAKRALTEM 212
E A A+ +
Sbjct: 264 EAAVEAMNAL 273
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E ++ +++G V + L+ D + G +G FV ++ +A A
Sbjct: 124 LFVGSVPRTATEEDVRPLFEEHG--DVLEVALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE I +F+ + +I + Y
Sbjct: 181 RGLHNHYTLPGA-MGPIQVRYADGERERHGAIE---HKLFVASLNKQATPKEIEEIFAPY 236
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + + R+ S + + GF+ FS+ EAAV +NA++
Sbjct: 237 GHVEDVYIMRD-SVKQSRGCGFVKFSSKEAAVEAMNALS 274
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+G L E ++K FE IG VI R+ T+R++GY +V F NK +A++A+ EM
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 213 KN------PVIC---------------GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL 251
+ P+ C K+ G PSE +DTLF+GN+ ++ I +
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELF 262
Query: 252 KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
+G V ++ + + + E +GF +V FS D+ A + LQ
Sbjct: 263 AKHGE--VVSVRIPTHPETE-QPKGFGYVQFSSLEDSKKALESLQ 304
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F R G ++ +R+ ++ T R+ YA+V F + + A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L VGNI ++I K+ V NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETH---EAAERAIEKMNGTLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 10/176 (5%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDC 105
Y + ED ++E L+++ K P +V V +E KSK G + +ED
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG------FVSFERHEDARKA 247
Query: 106 VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQ 164
VD E + + E + +R+ + +DR + + +++ LD D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDD 307
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++ K
Sbjct: 308 ERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD+ + + G ++ ++ + N +KGY FV F E A+RA+ +M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K +G
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFG--P 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV---- 309
++ +++D G S+GF FV F H DA A K L + G ++ V
Sbjct: 217 ALSVKVMTD--ESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E +++ D V +++ + + ++R +G + + M
Sbjct: 275 ELKRKF-EQMKQ-DRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVM--MEGG 330
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ E A + +N + + V L R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+ PS +L+VG++ T+ + +K G + +I + D+ S +A+V F
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSRAG--PILSIRVCRDVITRR-SSSYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 HPKDAERALDTMNF-DVIKGKPVRIM-------WSQRDPSLRRSGVGNIFVKNLDKSINN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D + +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 113 KVLYDTVSAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGTLLND 165
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
K K+ ++I D E ++ +F + G + V++ + S ++KG+ FV F E A
Sbjct: 186 KAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDA 244
Query: 206 KRALTEMKNPVICGKR--CGTAP----------------SEDNDT------LFVGNICNT 241
++A+ EM + GK+ G A +D T L+V N+ +
Sbjct: 245 RKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDD 304
Query: 242 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
E +++ +G I + G S+GF FV FS +A A +
Sbjct: 305 IDDERLRKAFSPFG-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 353
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+EDVR +FE G+V+EV L K+ T +G FVK+A E A+RA+
Sbjct: 123 KLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIRG 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ YG VE
Sbjct: 183 LHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEEIFAPYG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+ A L + G E+ + + FA+P R
Sbjct: 241 DVYIMRDSVKQ--SRGCGFVKFSSKEAAVEAMNALSGTYTMRGC-EQPLIIRFADPKR 295
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R EH++F+ L++ AT +++ ++F G V +V + ++ S +++G FVKF++K
Sbjct: 205 RERHGAIEHKLFVASLNKQATPKEIEEIFAPYGHVEDVYIMRD-SVKQSRGCGFVKFSSK 263
Query: 203 EHAKRALTEM 212
E A A+ +
Sbjct: 264 EAAVEAMNAL 273
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E ++ +++G V + L+ D + G +G FV ++ +A A
Sbjct: 124 LFVGSVPRTATEEDVRPLFEEHG--DVLEVALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE I +F+ + +I + Y
Sbjct: 181 RGLHNHYTLPGA-MGPIQVRYADGERERHGAIE---HKLFVASLNKQATPKEIEEIFAPY 236
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + + R+ S + + GF+ FS+ EAAV +NA++
Sbjct: 237 GHVEDVYIMRD-SVKQSRGCGFVKFSSKEAAVEAMNALS 274
>gi|32482140|gb|AAP84416.1| FCA protein, partial [Triticum aestivum]
Length = 740
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 262 EPALAAMNSLSGTYI 276
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 120/265 (45%), Gaps = 22/265 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ AT+ + ++F IG V+ +R+ ++ T R+ GYA+V F+ + A RA+ +
Sbjct: 45 LYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDVL 104
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE--------AIKQKLKDYGVEGVENINL 264
V+ GK S+ + T+ + N + K A++ +G + + +
Sbjct: 105 NFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG--NIVSAKV 162
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D Q G S+G+ F+ F A A +++ E KV + P +
Sbjct: 163 ATDGQ--GNSKGYGFIQFDTEAAAKEAIEKVN-------GMELNDKVVYVGPFQRRAERG 213
Query: 325 MAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
K VF+ + + ++R +G+G V ++++++ K K +GF+ + T E
Sbjct: 214 TTETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKD-EDGKSKGFGFVCYETPED 272
Query: 383 AVACINAINNKEFSDGNSKVKLRAR 407
A + ++ K + V RA+
Sbjct: 273 ASKAVEELDGKHGEEDKKWVVCRAQ 297
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
K + +F+ L + T E++RKVFE G V V + K+ ++KG+ FV + E A +A
Sbjct: 218 KFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKD-EDGKSKGFGFVCYETPEDASKA 276
Query: 209 LTEM--------KNPVIC-----------------GKRCGTAPSEDNDTLFVGNICNTWT 243
+ E+ K V+C +R L++ N+ +
Sbjct: 277 VEELDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGAD 336
Query: 244 KEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
E +++ K++G + + ++ D G+SRG AFV FS +A A L
Sbjct: 337 DETLRELFKEFGT--ITSCRVMRD--ASGVSRGSAFVAFSSPEEATRAVTEL 384
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 57 EEELENVDDKEEPET-VPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDY--GEHDE 113
+EEL V + P T V + K+ED KSK G Y + ED V+ G+H E
Sbjct: 233 DEELRKVFEGFGPVTSVMISKDEDGKSKGFG------FVCYETPEDASKAVEELDGKHGE 286
Query: 114 EE------FADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDV 167
E+ A E A+ E ERRE + K+ + ++I L+ A E +
Sbjct: 287 EDKKWVVCRAQKKAEREAELKAKFEAERRE-----RMEKMAGAN-LYIKNLEDGADDETL 340
Query: 168 RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226
R++F+ G + R+ ++ ++ ++G AFV F++ E A RA+TE+ GK G P
Sbjct: 341 RELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPEEATRAVTELN-----GKMVGAKP 393
>gi|32482147|gb|AAP84419.1| FCA-B2 [Triticum aestivum]
Length = 740
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 123 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 183 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 295
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 205 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 263
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 264 EPALAAMNSLSGTYI 278
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 124 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 183
Query: 391 NNK 393
+N+
Sbjct: 184 HNQ 186
>gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana]
gi|57169178|gb|AAW38964.1| FCA [Arabidopsis thaliana]
Length = 747
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|32482059|gb|AAP84387.1| FCA protein [Triticum aestivum]
Length = 728
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 112 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 171
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 172 LHNQCTLPGAMGPVQVRYADGEKERHGSIEHILFVASLNKQATAKEIEEIFAPFG--HVE 229
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 230 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 284
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 143 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTLPGAMGPVQVRYADGEKERHGSIEH 202
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 203 ILFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 261
Query: 212 MKNPVI 217
+ I
Sbjct: 262 LSGTYI 267
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 113 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 172
Query: 391 NNK 393
+N+
Sbjct: 173 HNQ 175
>gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|32482106|gb|AAP84405.1| FCA protein [Triticum aestivum]
Length = 735
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R P
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADP-RRP 292
Query: 321 DP 322
P
Sbjct: 293 RP 294
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 201 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 259
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 260 EPALAAMNSLSGTYI 274
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N + +RAL ++
Sbjct: 40 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQL 99
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 100 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG--NVLSCKV 157
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G SRG+ FV + A AA + L V GH ER K+
Sbjct: 158 ATD--ENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKID--- 212
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E + VF+ + + + + ++ YG+++ V+ ++ + +GF+
Sbjct: 213 -------EQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKD-EQGNSRGFGFV 264
Query: 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410
++ HE A + ++N E DG RA+ N
Sbjct: 265 NYKNHEEAAKAVESLNEVEV-DGKKIFAARAQKKN 298
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + + N ++GY FV + N E A A+ +
Sbjct: 128 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGN-SRGYGFVHYENGESASAAIQHV 186
Query: 213 KNPVICGKRCGTA--------------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ +F+ N+ + E KQ L+ YG
Sbjct: 187 NGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYG--- 243
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
E ++ V +G SRGF FV + H +A A + L + +V + + A A+
Sbjct: 244 -EILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEV----DGKKIFAARAQKKN 298
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMS 365
E + E+ + + L+ + + N ++ + + +G + + R+
Sbjct: 299 EREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-E 357
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K +GF+ FS+ + A ++ ++ K V L R
Sbjct: 358 KGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQR 399
>gi|334302803|sp|O04425.2|FCA_ARATH RecName: Full=Flowering time control protein FCA
gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana]
gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana]
Length = 747
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|32482079|gb|AAP84395.1| FCA protein [Triticum aestivum]
Length = 734
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 118 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 177
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 178 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 235
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 236 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLVVRFADPKR 290
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 149 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 208
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 209 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 267
Query: 212 MKNPVI 217
+ I
Sbjct: 268 LSGTYI 273
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 119 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 178
Query: 391 NNK 393
+N+
Sbjct: 179 HNQ 181
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 123
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 124 DENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 179
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ ++ +++ +G + + + R+ S K K +GF+ + HE A
Sbjct: 180 EFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKA 238
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 239 VEEMNGKEMS 248
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 149
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N + +K+ +G
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFG--K 207
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 208 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 266 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 323
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 324 KGFGFVCFSSPEEATKAVTEMNGR 347
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+L+VG++ + T+ + +K G V +I + D+ S G+A+V F DA A
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGP--VLSIRVCRDMITR-RSLGYAYVNFQQPADAERA 59
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKENQIRDQIK 350
+ DV+ G P R + + DP + + V VF+ + + D
Sbjct: 60 LDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 111
Query: 351 GYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 AFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 156
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 13/199 (6%)
Query: 23 SSKQKEPALVEVAKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKS 82
S K++E L AK + I + EE D+D +E +T+ V D
Sbjct: 166 SRKEREAELGAKAKEFTNV-YIKNFGEEVDDDNLKELFSQFG-----KTLSVKVMRDPSG 219
Query: 83 KLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIA 142
K G F S Y +ED V+ E + + E + +R+ +
Sbjct: 220 KSKGFGFVS----YEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLK 275
Query: 143 KDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201
++R + + ++I LD E +RK F G + ++ R+KG+ FV F++
Sbjct: 276 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSS 333
Query: 202 KEHAKRALTEMKNPVICGK 220
E A +A+TEM ++ K
Sbjct: 334 PEEATKAVTEMNGRIVGSK 352
>gi|186511879|ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 747
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
>gi|32482371|gb|AAP84378.1| FCA protein [Triticum aestivum]
Length = 736
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ +T +G FVK+A E A+RA+
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRNTGEQQGCCFVKYATSEEAERAIRA 179
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 180 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 237
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 238 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 292
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 151 IRDRNTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 210
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 211 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 269
Query: 212 MKNPVI 217
+ I
Sbjct: 270 LSGTYI 275
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ +T +++ F+ ++T E A I A+
Sbjct: 121 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRNTGEQQGCCFVKYATSEEAERAIRAL 180
Query: 391 NNK 393
+N+
Sbjct: 181 HNQ 183
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 132/282 (46%), Gaps = 25/282 (8%)
Query: 124 PADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
PAD AE E+ E + IA++ +++G L+ + + ++F IG+V +R+
Sbjct: 49 PADSAE----EQGESSGIAENSA-----SLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT--------LFV 235
++ + ++ GYA+V + E ++A+ E+ + G+ C S+ + + +F+
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 236 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
N+ +A+ +G + ++ + +D G S+ F FV + A AA + +
Sbjct: 160 KNLHPAIDNKALHDTFSAFG--KILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 296 QKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKENQIRDQIKGYGD 354
++ E V ++ RE E M A+ +++ + + E + + +G
Sbjct: 216 N--GMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK 273
Query: 355 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+ I L ++ + K K +GF++F HEAA + +N+KE +
Sbjct: 274 ITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEIN 314
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 53/335 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L + + F G+++ V++ + ++K + FV + +E A+ A+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 213 KNPVI------CGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ GK E ++V NI +T++ ++ +G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG--K 273
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ +I L D EG S+GF FV F H A A + L ++ + + V A+ R
Sbjct: 274 ITSIYLEKD--AEGKSKGFGFVNFEEHEAAAKAVEELNDKEI----NGQKIYVGRAQKKR 327
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMS 365
E E+ + V L+ + + N ++ ++ K +G + + +
Sbjct: 328 ERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-D 386
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL-------RARLSNPMP----- 413
K K +GF+ FST E A I +N + + V L R++L +
Sbjct: 387 AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQM 446
Query: 414 --KTQAVKGGMSGGFR--IGHGSSRTFSRYGRGSG 444
+ A GG+ G F + +G F GRG+
Sbjct: 447 RMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNA 481
>gi|32482390|gb|AAP84384.1| FCA protein [Triticum aestivum]
Length = 737
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 262 EPALAAMNSLSGTYI 276
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|32482114|gb|AAP84409.1| FCA protein [Triticum aestivum]
Length = 736
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 180 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 237
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 238 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 292
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 202 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 260
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 261 EPALAAMNSLSGTYI 275
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 121 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 180
Query: 391 NNK 393
+N+
Sbjct: 181 HNQ 183
>gi|32482092|gb|AAP84399.1| FCA protein [Triticum aestivum]
Length = 740
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 242
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 243 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 297
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 156 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 215
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 216 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 274
Query: 212 MKNPVI 217
+ I
Sbjct: 275 LSGTYI 280
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 126 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 185
Query: 391 NNK 393
+N+
Sbjct: 186 HNQ 188
>gi|32482094|gb|AAP84400.1| FCA protein [Triticum aestivum]
Length = 737
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 180 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 237
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 238 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 292
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 202 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 260
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 261 EPALAAMNSLSGTYI 275
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 121 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 180
Query: 391 NNK 393
+N+
Sbjct: 181 HNQ 183
>gi|32482142|gb|AAP84417.1| FCA-A1 [Triticum aestivum]
gi|32482144|gb|AAP84418.1| FCA-A2 [Triticum aestivum]
Length = 741
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 242
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 243 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 297
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 207 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 265
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 266 EPALAAMNSLSGTYI 280
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 126 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 185
Query: 391 NNK 393
+N+
Sbjct: 186 HNQ 188
>gi|32482067|gb|AAP84390.1| FCA protein [Triticum aestivum]
Length = 735
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEYKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R E+++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 201 KERHGSIEYKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 259
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 260 EPALAAMNSLSGTYI 274
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|32482123|gb|AAP84412.1| FCA protein, partial [Triticum aestivum]
Length = 737
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 262 EPALAAMNSLSGTYI 276
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + F+ G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G + + +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG--NILSCKV 121
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA---EPLREPD 321
V DI S+GF FV + A A ++K + + ++ F + +RE
Sbjct: 122 VCDING---SKGFGFVHYESDESAQRA---IEKVNGMLMEDKKVFVARFKSRNDRMREFG 175
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
+ H +F+ +P W + + + + +G+V+ + + +T K +GFI F H+
Sbjct: 176 -DAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 382 AAVACINAINNKEF 395
A A + ++ KE
Sbjct: 235 QAEAAVEIMHEKEI 248
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/358 (18%), Positives = 148/358 (41%), Gaps = 51/358 (14%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L + FQ+ G C D +A + ++PAD L+
Sbjct: 8 DLHPDITEAMLYDKFQAS----GPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 135 RRE--------LNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
+ + +D +++ + +FI LDR + + F G ++ ++
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVC 123
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDND------------- 231
+ N +KG+ FV + + E A+RA+ ++ ++ K+ A + +
Sbjct: 124 DI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 232 -TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
LFV N+ ++W +A+ + + +G V + ++ D + GLS+ F+ F H A A
Sbjct: 182 TNLFVKNLPDSWDTDALLENFEQFG--EVVSHKVICD-ETTGLSKCHGFISFKEHDQAEA 238
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV-------------FLDGVP 337
A + + + ++ + + A+ E E+ A + + ++ +
Sbjct: 239 AVEIMHEKEI----EGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLD 294
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ +R+ K +G++ + +++ + K +GF+ FS+ E A + +N + F
Sbjct: 295 DSIDDEGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIF 351
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEPADEAETL------EDERRELNAIAKDRKIKKEH-------E 152
+ + EHD+ E A + M E E + L + R AK KIK+E
Sbjct: 228 ISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN 287
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD E +R+ F++ G + ++ + + R+KG+ FV F++ E A +A+TEM
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEM 346
Query: 213 KNPVICGK 220
+ GK
Sbjct: 347 NGRIFGGK 354
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ED+R +FE G VIEV L K+ T +++G F+K+A E A +A+
Sbjct: 87 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T + +++ YG VE
Sbjct: 147 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGR--VE 204
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + + SRG FV +S A+AA L + G E+ + V FA+P R
Sbjct: 205 DVYLMRDEKKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGC-EQPLIVRFADPKR 259
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 88 LFVGSVPRTATEEDIRPLFEEHG--NVIEVALIKD-KKTGQHQGCCFIKYATSEEADQAI 144
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + ++ + Y
Sbjct: 145 RALHNQHTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATVKEVEEIFSKY 200
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ R GF+ +S + A+A INA+N
Sbjct: 201 GRVEDVYLMRDEKKQSR-GCGFVKYSHRDMALAAINALN 238
>gi|32482125|gb|AAP84413.1| FCA protein, partial [Triticum aestivum]
Length = 722
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 115 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 174
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 175 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 232
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 233 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 287
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 197 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 255
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 256 EPALAAMNSLSGTYI 270
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 116 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 175
Query: 391 NNK 393
+N+
Sbjct: 176 HNQ 178
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 34/262 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD++ + +F ++G+V+ VR+ ++ +T R+ GY +V F+N + A RAL
Sbjct: 37 LYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVL 96
Query: 210 --TEMKNPVI---------CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
T + N I ++ GTA +F+ N+ +A+ +G+
Sbjct: 97 NFTPLNNRSIRIMYSHRDPSLRKSGTA------NIFIKNLDKAIDHKALHDTFSSFGL-- 148
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + +D GLS+G+ FV F A A +L G +V LR
Sbjct: 149 ILSCKIATD--ASGLSKGYGFVQFDNEEAAQNAIDKLN------GMLINDKQVYVGHFLR 200
Query: 319 EPDPE-IMAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
+ D E ++ K V++ + + ++ YG + ++ R+ + K + +GF+
Sbjct: 201 KQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRD-ADGKSRCFGFV 259
Query: 376 DFSTHEAAVACINAINNKEFSD 397
+F + A + +N K+F D
Sbjct: 260 NFENPDDAAKAVEGLNGKKFDD 281
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 31/278 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + ++ +KGY FV+F N+E A+ A+ ++
Sbjct: 125 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDNEEAAQNAIDKL 183
Query: 213 KNPVICGK------------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+I K R + ++V N+ + T E + +YG +
Sbjct: 184 NGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGT--IT 241
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHP------ERTV 309
+ ++ D +G SR F FV F DA A K+ + G E+ +
Sbjct: 242 SALIMRD--ADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQEL 299
Query: 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
K F + ++E + ++L + + ++++ YG + + R+ T
Sbjct: 300 KGRFEQSIKEAADKYPGL--NLYLKNLDDTISDEKLKEMFADYGTITSCKVMRD-PTGIS 356
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ GF+ FST E A + +N K F+ V L R
Sbjct: 357 RGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQR 394
>gi|32482081|gb|AAP84396.1| FCA protein [Triticum aestivum]
Length = 719
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 117 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 176
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 177 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 234
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 235 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 289
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 199 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 257
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 258 EPALAAMNSLSGTYI 272
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 118 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 177
Query: 391 NNK 393
+N+
Sbjct: 178 HNQ 180
>gi|32482096|gb|AAP84401.1| FCA protein [Triticum aestivum]
Length = 735
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIGHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R H
Sbjct: 150 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIGH 209
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 210 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 268
Query: 212 MKNPVI 217
+ I
Sbjct: 269 LSGTYI 274
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|32482090|gb|AAP84398.1| FCA protein [Triticum aestivum]
Length = 719
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 105 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 164
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 165 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 222
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 223 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 277
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 187 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 245
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 246 EPALAAMNSLSGTYI 260
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 106 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 165
Query: 391 NNK 393
+N+
Sbjct: 166 HNQ 168
>gi|32482369|gb|AAP84377.1| FCA protein [Triticum aestivum]
Length = 727
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 115 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCFVKYATSEEAERAIRA 174
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 175 LHNQCTIPGAMGPVQVRYADGERERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 232
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 233 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 287
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + ++R EH
Sbjct: 146 IRDRKTGEQQGRCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGERERHGSIEH 205
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 206 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 264
Query: 212 MKNPVI 217
+ I
Sbjct: 265 LSGTYI 270
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 116 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCFVKYATSEEAERAIRAL 175
Query: 391 NNK 393
+N+
Sbjct: 176 HNQ 178
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 24/271 (8%)
Query: 137 ELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
E+NA A + +++G L D T+ + + F G V+ +R+ ++ T R+ GYA+
Sbjct: 17 EMNAAASSYPMA---SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAY 73
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIK 248
V F A+RAL M V+ GK S+ + +L F+ N+ + +A+
Sbjct: 74 VNFQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALY 133
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+G NI + E S+G+AFV F AA K ++K + + + +R
Sbjct: 134 DTFSAFG-----NILSCKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRK 184
Query: 309 VKVAFAEPLREPDPEIMAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
V V + +E + E+ A K V++ + +++ +G + + + R+ S
Sbjct: 185 VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-S 243
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+ K K +GF+ + HE A + +N KE S
Sbjct: 244 SGKSKGFGFVSYEKHEDANKAVEEMNGKEMS 274
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 175
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ ++ G S +G +T IK LK+ + + +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KVAFAE 315
++ G S+GF FV + H DA A K + + G ++ V +
Sbjct: 236 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 295
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
+ E ++ + V ++ + + ++R + +G + + + + K +G
Sbjct: 296 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFG 353
Query: 374 FIDFSTHEAAVACINAINNK 393
F+ FS+ E A + +N +
Sbjct: 354 FVCFSSPEEATKAVTEMNGR 373
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 76
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 77 QQPADAERALDTMNF-DVMKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 128
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 129 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 182
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +R+ F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 313 LYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 370
Query: 213 KNPVICGK 220
++ K
Sbjct: 371 NGRIVGSK 378
>gi|32482065|gb|AAP84389.1| FCA protein [Triticum aestivum]
Length = 739
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 183
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 241
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 242 DVYVMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 296
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 206 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYVMKD-GMRQSRGCGFVKFSSK 264
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 265 EPALAAMNSLSGTYI 279
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 125 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 184
Query: 391 NNK 393
+N+
Sbjct: 185 HNQ 187
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 16/255 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ S+ + +L + N + K +I K NI Q
Sbjct: 73 NFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
E G S+G+ FV F AA K ++K + + + ++ V V P +E + E+
Sbjct: 133 DENGTSKGYGFVHFETE---EAANKSIEKVNGMLLNGKK-VYVGRFIPRKEREKELGEKA 188
Query: 329 KT---VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAA 383
K V++ E Q+R + YG +I + MS K K +GF+ F + EAA
Sbjct: 189 KLFTNVYVKNFGEDLTEEQLRTMFEKYG---KITSYKIMSKDDGKSKGFGFVAFESPEAA 245
Query: 384 VACINAINNKEFSDG 398
+ A+N KE DG
Sbjct: 246 ETAVEALNGKEIIDG 260
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 147/358 (41%), Gaps = 55/358 (15%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F + G C D +A + ++PAD L+
Sbjct: 17 DLHTDITEAMLFEKFSTA----GPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 135 RRELNA--------IAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
+L +D ++K +FI LDR + + F G ++ ++ +
Sbjct: 73 NFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA---PSEDND---------- 231
+ +KGY FV F +E A +++ ++ ++ GK+ P ++ +
Sbjct: 133 D-ENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 232 -TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
++V N T+E ++ + YG + + ++S + +G S+GF FV F A
Sbjct: 192 TNVYVKNFGEDLTEEQLRTMFEKYG--KITSYKIMS--KDDGKSKGFGFVAFESPEAAET 247
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD------GVPPHWK--- 341
A + L +++ G P + V A+ E E+ + + ++ GV + K
Sbjct: 248 AVEALNGKEIIDGKP---LYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLD 304
Query: 342 ----ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ ++R + +G + ++++ N S K +GF+ FS+ E A + +N +
Sbjct: 305 DTIDDERLRKEFSPFGTITSAKVMMEDNRS----KGFGFVCFSSPEEATKAVTEMNGR 358
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 127 EAETLEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN 185
+AE ++ +R A+ +R + + +++ LD E +RK F G + ++
Sbjct: 271 KAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVM-- 328
Query: 186 FSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
NR+KG+ FV F++ E A +A+TEM ++ K
Sbjct: 329 MEDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 363
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 9 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 68
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G V + +
Sbjct: 69 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 126
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G S+G+ FV + A A K L V GH ER K+
Sbjct: 127 ATD--EHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIE--- 181
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ +++ V P + + + +G + VL + K + +GF+
Sbjct: 182 -------EMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVD-DEGKSRGFGFV 233
Query: 376 DFSTHEAAVACINAINNKEF 395
+F THE A A + A+++ +
Sbjct: 234 NFDTHEEAHAAVEALHDSDV 253
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 113/282 (40%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R+KGY FV + E A+ A+ +
Sbjct: 97 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAAETAIKAV 155
Query: 213 KNPVICGKRCGTA--------------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ ++V N+ T+E Q + +G
Sbjct: 156 NGMLLNDKKVYVGHHISRKERQSKIEEMKNQFTNIYVKNVDPEVTQEEFVQLFEPFG--- 212
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ V + EG SRGF FV F H +A AA + L DV R + VA A+
Sbjct: 213 -RITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDV----KGRKLFVARAQKKA 267
Query: 319 EPDPEI-----------MAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ M+ + V ++ + + ++R + + +G++ + R+
Sbjct: 268 EREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRGEFEPFGNITSAKVMRD-E 326
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K +GF+ FS+ + A + +NNK V L R
Sbjct: 327 KGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 368
>gi|32482394|gb|AAP84386.1| FCA protein [Triticum aestivum]
Length = 735
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNRQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 150 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 209
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L+R AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 210 KLFVASLNRQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 268
Query: 212 MKNPVI 217
+ I
Sbjct: 269 LSGTYI 274
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|332658328|gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 106 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 161
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 162 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 218
Query: 319 EPDP 322
P P
Sbjct: 219 -PKP 221
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 128 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 186
Query: 203 EHAKRAL 209
E A A+
Sbjct: 187 ETAMAAI 193
>gi|222142946|gb|ACI16484.2| flowering time control protein [Hordeum vulgare]
Length = 743
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 125 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 184
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 185 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 242
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA P R
Sbjct: 243 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFANPKR 297
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 207 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 265
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 266 EPALAAMNSLSGTYI 280
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 126 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 185
Query: 391 NNK 393
+N+
Sbjct: 186 HNQ 188
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 22/253 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + +F ++G+V+ VR+ ++ ++ R+ GY +V ++N A RAL +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 213 K------NP--VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
NP V+ R + + +F+ N+ +A+ +G + + +
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG--SILSCKV 148
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+GF FV F A+ A ++L G +V LR+ + E
Sbjct: 149 ATD--SSGQSKGFGFVQFDTEEAALKAIEKLN------GMLLNDKQVFVGPFLRKQERES 200
Query: 325 MAH---VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
++ VF+ + E +++ +G + +V+ R+ K K +GF++F +
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD-GEGKSKCFGFVNFENAD 259
Query: 382 AAVACINAINNKE 394
A + A+N K+
Sbjct: 260 DAARSVEALNGKK 272
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 22/253 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + +F ++G+V+ VR+ ++ ++ R+ GY +V ++N A RAL +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 213 K------NP--VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
NP V+ R + + +F+ N+ +A+ +G + + +
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG--SILSCKV 148
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+GF FV F A+ A ++L G +V LR+ + E
Sbjct: 149 ATD--SSGQSKGFGFVQFDTEEAALKAIEKLN------GMLLNDKQVFVGPFLRKQERES 200
Query: 325 MAH---VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
++ VF+ + E +++ +G + +V+ R+ K K +GF++F +
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD-GEGKSKCFGFVNFENAD 259
Query: 382 AAVACINAINNKE 394
A + A+N K+
Sbjct: 260 DAARSVEALNGKK 272
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 131/300 (43%), Gaps = 33/300 (11%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K IFI LD+ + + F G ++ ++ + S+ ++KG+ FV+F
Sbjct: 107 RDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFD 165
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP----------SEDN--DTLFVGNICNTWTKEAIK 248
+E A +A+ ++ ++ K+ P SE + +FV N+ T ++E +K
Sbjct: 166 TEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLK 225
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-----VFG 303
++G + ++ ++ D EG S+ F FV F DA + + L V G
Sbjct: 226 NMFGEFG--PITSVVVMRD--GEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVG 281
Query: 304 HPERT------VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
++ +K F + ++E + +++ + ++++++ G+G +
Sbjct: 282 KAQKKSEREVELKSRFEQSVKEAADKYQG--ANLYVKNLDDSIDDDKLKELFTGFGTITS 339
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
+ R+ + R GF+ FS+ E A + +N + V L R + + + QA
Sbjct: 340 CKVMRDPNGISRGS-GFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQA 398
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + + +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL----NDRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
>gi|32482116|gb|AAP84410.1| FCA protein [Triticum aestivum]
Length = 707
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 103 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 162
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 163 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 220
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 221 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 275
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 185 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 243
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 244 EPALAAMNSLSGTYI 258
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 104 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 163
Query: 391 NNK 393
+N+
Sbjct: 164 HNQ 166
>gi|32482074|gb|AAP84393.1| FCA protein [Triticum aestivum]
Length = 724
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 108 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 167
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 168 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 225
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 226 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 280
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 190 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 248
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 249 EPALAAMNSLSGTYI 263
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 109 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 168
Query: 391 NNK 393
+N+
Sbjct: 169 HNQ 171
>gi|32482108|gb|AAP84406.1| FCA protein [Triticum aestivum]
Length = 724
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 108 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 167
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 168 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 225
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 226 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 280
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 190 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 248
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 249 EPALAAMNSLSGTYI 263
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 109 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 168
Query: 391 NNK 393
+N+
Sbjct: 169 HNQ 171
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F R G ++ +R+ ++ T R+ YA+V F + + A+ AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L VGNI ++I K+ V NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + +R V V + +E + E+ A VK
Sbjct: 133 DENGSKGYGFVHFETH---EAAERAIEKMNGTLLN-DRKVFVGRFKSRKEREAELGAKVK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLG-------ENFQSELDDYGS 98
Y + ED ++E L+++ K P +V V +E KSK G E+ Q +D+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGG 157
E G + G ++ E + +R+ + +DR + + +++
Sbjct: 254 KELNGKQIYVGRAQKK-------------VERQTELKRKFEQMKQDRITRYQVVNLYVKN 300
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
LD D E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++
Sbjct: 301 LDDDIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 218 CGK 220
K
Sbjct: 359 ATK 361
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD+ + + G ++ ++ + N +KGY FV F E A+RA+ +M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A ++ +++ N E +K +G
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFG--P 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV---- 309
++ +++D G S+GF FV F H DA A K L + G ++ V
Sbjct: 217 ALSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E +++ D V +++ + + ++R +G + + M
Sbjct: 275 ELKRKF-EQMKQ-DRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVM--MEGG 330
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ E A + +N + + V L R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+ PS +L+VG++ T+ + +K G + +I + D+ S +A+V F
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSRAG--PILSIRVCRDVITRR-SSSYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 HPKDAEHALDTMNF-DVIKGKPVRIM-------WSQRDPSLRRSGVGNIFVKNLDKSINN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D + +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 113 KVLYDTVSAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGTLLND 165
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
K+K+ ++I D E ++ +F + G + V++ + + ++KG+ FV F E A
Sbjct: 186 KVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244
Query: 206 KRALTEMKNPVICGKR--CGTAP----------------SEDNDT------LFVGNICNT 241
++A+ EM + GK+ G A +D T L+V N+ +
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDD 304
Query: 242 WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
E +++ +G I + G S+GF FV FS +A A +
Sbjct: 305 IDDERLRKAFSPFG-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 353
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 26/256 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + ++F +G+V +R+ ++ T ++ GYA+V + E +RAL ++
Sbjct: 53 LYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQL 112
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + + +
Sbjct: 113 NYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFG--RILSCKV 170
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFG-HPERTVKVAFAEPLR 318
+D G S+ F FV + A AA + L +V G H + +VA E
Sbjct: 171 ATD--EHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFE--- 225
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
E+ A+ VF+ + E ++ + YG + + ++ S K K +GFI+F
Sbjct: 226 ----EMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKD-SEGKSKGFGFINFE 280
Query: 379 THEAAVACINAINNKE 394
H+AAV + +N+KE
Sbjct: 281 NHDAAVKAVEELNDKE 296
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 37/268 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L D + + F G ++ ++ + R+K + FV + E A A+ +
Sbjct: 141 IFIKNLHPDIDNKALHDTFSAFGRILSCKVATD-EHGRSKCFGFVHYETAEAADAAIENV 199
Query: 213 KN------PVICGKRCG----TAPSEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEG 258
V GK A E+ +FV N + +T+ + + YG
Sbjct: 200 NGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYG--- 256
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ +L + EG S+GF F+ F H A+ A + L +V + + V A+ R
Sbjct: 257 -KITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEV----NGQKIYVGRAQKKR 311
Query: 319 EPDPEIMAHVKT-------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E E+ +T +F+ + + ++ K +G + + +
Sbjct: 312 ERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVD-E 370
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNK 393
T K K +GF+ FS E A I +N +
Sbjct: 371 TGKSKGFGFVCFSAPEEATKAITEMNQR 398
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD T E + + F+ G + ++ + T ++KG+ FV F+ E A +A+TEM
Sbjct: 337 LFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVD-ETGKSKGFGFVCFSAPEEATKAITEM 395
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 396 NQRMVLGKPLYVALAQRKDV 415
>gi|224097144|ref|XP_002310850.1| predicted protein [Populus trichocarpa]
gi|222853753|gb|EEE91300.1| predicted protein [Populus trichocarpa]
Length = 84
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 571 VKRSFHVMDHEPDYMGPRRFRPRLD-------YNDPVIPFHGSHHHDNVGACSNHYSDDY 623
+KRSF++ D +PDYM P R RPRLD Y DP F G+H+ D GA S+ Y +Y
Sbjct: 1 MKRSFYMTDQDPDYMEPSRLRPRLDFADPRVDYADPAASFRGTHYRDTYGAGSDPYFHEY 60
Query: 624 HVPNYGAHPPYPPYYGDDRLYGGGYFY 650
+Y PYPPYYG D YGGGY Y
Sbjct: 61 RGSDYD---PYPPYYGRDHSYGGGYHY 84
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 27/273 (9%)
Query: 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYA 195
+E+N AK R + +++G L D T++ + K F +G V+ +R+ ++ T R+ GYA
Sbjct: 98 KEMNVAAKYR----QASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYA 153
Query: 196 FVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAI 247
+V F A+RAL M I GK S+ + L F+ N+ + + +
Sbjct: 154 YVNFLKLADAQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTL 213
Query: 248 KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR----LQKPDVVFG 303
+ +G + + ++SD Q SRG+AFV F + A A + L K +F
Sbjct: 214 YEHFSAFG--KILSSKVMSDDQG---SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV 268
Query: 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 363
+ K AE LR E V++ + ++++ YG + + + +
Sbjct: 269 GRFKNRKDREAE-LRNKANEFT----NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD 323
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
S+ K K +GF+ F +HEAA + +N K+ +
Sbjct: 324 -SSGKSKGFGFVSFDSHEAAKKAVEEMNGKDIN 355
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I D E +++VF + G+ + V++ + S+ ++KG+ FV F + E AK+A+ EM
Sbjct: 291 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 349
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
I G+ ++ L++ N+ +T E +
Sbjct: 350 NGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLW 409
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ +G +I+ V ++ EG S+GF + FS +A A +
Sbjct: 410 REFSSFG-----SISRVKIMREEGRSKGFGLICFSSPEEATKAMAEM 451
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVVCDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ D+R +FE G VIEV L K+ T + +G F+K+A E A RA+
Sbjct: 89 KLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIRA 148
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T++ +++ YG VE
Sbjct: 149 LHNQRTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYGR--VE 206
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV +S A+AA L + G E+ + V FA+P R
Sbjct: 207 DVYLMRDEMKQ--SRGCGFVKYSHRDMALAAINGLNGIYTMRGC-EQPLTVRFADPKR 261
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 91 SELDDYGSYEDYGDCVDY--------GEHDEEEFADDDMEEPADEA-ETLEDERRELNAI 141
+E+D +E++G+ ++ G+ F E AD A L ++R +
Sbjct: 100 TEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIRALHNQRTLPGGV 159
Query: 142 A----------KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRN 191
++R E+++F+G L++ AT+++V ++F G V +V L ++ ++
Sbjct: 160 GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYGRVEDVYLMRD-EMKQS 218
Query: 192 KGYAFVKFANKEHAKRALTEM 212
+G FVK+++++ A A+ +
Sbjct: 219 RGCGFVKYSHRDMALAAINGL 239
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVVCDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+G L E ++K FE IG VI R+ T+R++GY +V F NK +A++A+ EM
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 213 K------NPVIC---------------GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL 251
+ P+ C K+ G PSE +DTLF+GN+ ++ I +
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLSFNADRDTIFELF 262
Query: 252 KDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
+G V ++ + + + E +GF +V FS D+ A + LQ
Sbjct: 263 AKHG--EVVSVRIPTHPETE-QPKGFGYVQFSSLEDSKKALESLQ 304
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D ++ + +VF ++G V +R+ ++ +T R+ YA++ + N A+RAL +
Sbjct: 10 LYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDTL 69
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
N I GK C S+ + +L F+ N+ T +A+ +G + + +
Sbjct: 70 NNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG--NILSCKV 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV----VFGHPERTVKVAFAEPLREP 320
V+D S+GF FV + A A ++ + VF P ++ K R
Sbjct: 128 VTD--ETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKE------RGA 179
Query: 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ VF+ + E Q+ D ++ +G + + + + K K +GF +F
Sbjct: 180 TQEV--KYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTD-EKGKSKGFGFANFEHA 236
Query: 381 EAAVACINAINNKEFS 396
+AA + N K FS
Sbjct: 237 DAAKGAVENENGKMFS 252
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 112/252 (44%), Gaps = 26/252 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + TN +KG+ FV + ++E A++A+ ++
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 213 KNPVICGKRCGTAPSEDN-----------DTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261
+I ++ P + + +F+ N+ +++ + L+ +G + N
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG--KITN 214
Query: 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
+ +++D +G S+GF F F H DA + + G + + V A+ E +
Sbjct: 215 LCIMTD--EKGKSKGFGFANFE-HADAAKGAVENENGKMFSG---KVIYVGRAQKKLERE 268
Query: 322 PEIMAHVKT------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ +T +++ + +++R YG + + R+ + K +GF+
Sbjct: 269 AELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFV 328
Query: 376 DFSTHEAAVACI 387
+ST + A +
Sbjct: 329 CYSTPDEASKAV 340
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ S K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|330794338|ref|XP_003285236.1| hypothetical protein DICPUDRAFT_86618 [Dictyostelium purpureum]
gi|325084778|gb|EGC38198.1| hypothetical protein DICPUDRAFT_86618 [Dictyostelium purpureum]
Length = 1002
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 154/351 (43%), Gaps = 33/351 (9%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEI 153
+D S + D V+ + E+ ++ M + ++L+ + + + KK+ I
Sbjct: 278 EDLNSADVDADIVNKAIQEAEKAVNEKMSSEKKKEDSLDKNKIQQAITDMEESFKKKPSI 337
Query: 154 FIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--TE 211
+ GL+ T+++++ G+V H + K A V+ N + AK L T+
Sbjct: 338 RVAGLNDSLTEKELKDALAEHGKV-----HTFTYESPKKDSAIVQMENYQQAKEKLSGTK 392
Query: 212 MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271
+KN C P D LFVGN+ TKE +K+ + YG V+ I ++ +
Sbjct: 393 LKN---CTLTITEIPLAD-SLLFVGNLGFEITKEQLKKIFEKYG--DVDRI-IIMKSKRS 445
Query: 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV 331
G ++G+AF+ + + A +A L F RT++V +AE + H KT+
Sbjct: 446 GENKGYAFIDYRTKLQANSAKTSLGS----FSFNRRTIRVDWAENCNSLES---LHSKTI 498
Query: 332 FLDGVPPHWKENQIRDQI-KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
F+D +P + + I ++ +G + + N +++ + FID++T + A +
Sbjct: 499 FVDRLPRSFADIPILKKLFSPFGKIKDCNVVPNQ-YGQQRGFAFIDYTTVDEAEKAQRLM 557
Query: 391 NNKEFSDGNSKVKLRARLSNP------MPKTQAVKGGMSGGFRIGHGSSRT 435
N+K+ K+R +NP + K QA G + GS+ T
Sbjct: 558 NDKDLRG----YKIRVNFANPAKAGHILIKPQAQSRNEHKGVQSNRGSAPT 604
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 29/299 (9%)
Query: 39 DIIEAIFQYKEET--DEDPEEEELENVDDKEEPETVPVDKEEDLKSK----LLGEN---F 89
DI+ Q E+ ++ E++ E+ DK + + D EE K K + G N
Sbjct: 288 DIVNKAIQEAEKAVNEKMSSEKKKEDSLDKNKIQQAITDMEESFKKKPSIRVAGLNDSLT 347
Query: 90 QSELDDYGSYEDYGDCVDYG-EHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIK 148
+ EL D + ++G + E +++ A ME E L + + +
Sbjct: 348 EKELKD--ALAEHGKVHTFTYESPKKDSAIVQMENYQQAKEKLSGTKLKNCTLTITEIPL 405
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
+ +F+G L + T+E ++K+FE+ G+V + + K+ + NKGYAF+ + K A A
Sbjct: 406 ADSLLFVGNLGFEITKEQLKKIFEKYGDVDRIIIMKSKRSGENKGYAFIDYRTKLQANSA 465
Query: 209 LTEMKN--------PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKL-KDYGVEGV 259
T + + V + C + S + T+FV + ++ I +KL +G +
Sbjct: 466 KTSLGSFSFNRRTIRVDWAENCNSLESLHSKTIFVDRLPRSFADIPILKKLFSPFG--KI 523
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ N+V + G RGFAF+ ++ VD +RL + G+ ++V FA P +
Sbjct: 524 KDCNVVPN--QYGQQRGFAFIDYTT-VDEAEKAQRLMNDKDLRGY---KIRVNFANPAK 576
>gi|32482381|gb|AAP84380.1| FCA protein [Triticum aestivum]
Length = 721
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 105 KLFVGSVPRTANEDDVRPLFEGHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 164
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 165 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 222
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 223 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMDSLSGTYIMRGC-EQPLIVRFADPKR 277
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 187 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 245
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 246 EPALAAMDSLSGTYI 260
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R +G+GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 106 LFVGSVPRTANEDDVRPLFEGHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 165
Query: 391 NNK 393
+N+
Sbjct: 166 HNQ 168
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVVCDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 31/288 (10%)
Query: 122 EEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR 181
EE D +E+ ++ + N ++IG LD T+ + ++F IG V +R
Sbjct: 45 EETKDSSESASNKTKSENG-----NTSTSASLYIGELDPMVTEAMLFELFNSIGPVASIR 99
Query: 182 LHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL-------- 233
+ ++ T R+ GYA+V F N E ++AL E+ +I G+ C S+ + +L
Sbjct: 100 VCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNV 159
Query: 234 FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293
F+ N+ +A+ +G + ++ + G S+G+ FV F A AA +
Sbjct: 160 FIKNLDPAIDNKALHDTFSAFG----KILSCKVAVDELGNSKGYGFVHFDSVDSANAAIE 215
Query: 294 -----RLQKPDVVFG-HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRD 347
L V G H R + + E L+ A+ V++ + E +
Sbjct: 216 HVNGMLLNDKKVYVGHHISRRDRQSKFEALK-------ANFTNVYVKNLDLDTTEEEFTK 268
Query: 348 QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ YG + + LA++ + K + + F++F+TH++A ++ +N+ E+
Sbjct: 269 LFEKYGKITSLSLAKD-NAGKFRGFAFVNFATHDSAQQAVDELNDFEY 315
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD D T+E+ K+FE+ G++ + L K+ + + +G+AFV FA + A++A+ E+
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKD-NAGKFRGFAFVNFATHDSAQQAVDEL 310
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
+ GK+ ++ LFV N+ + E +K
Sbjct: 311 NDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLK 370
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ +G + + +++D ++ S+GF FV +S +A A + + ++ G P
Sbjct: 371 SEFSAFGT--ITSAKVMTDENNK--SKGFGFVCYSNPEEATKAIAEMNQ-RMLAGKP--- 422
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 423 LYVALAQ 429
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL-----------EDERRELNAIA 142
D+ G + + V++ HD + A D++ + + + L ++E R+
Sbjct: 284 DNAGKFRGFA-FVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQM 342
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K KI K +F+ L + E ++ F G + ++ + N++KG+ FV ++
Sbjct: 343 KLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTD-ENNKSKGFGFVCYS 401
Query: 201 NKEHAKRALTEMKNPVICGK 220
N E A +A+ EM ++ GK
Sbjct: 402 NPEEATKAIAEMNQRMLAGK 421
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 120/255 (47%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F+ A+RAL M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
V+ GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA + ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQD---AADRAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ ++ Q+++ + YG + + + + S+ K + +GF+ F HE
Sbjct: 184 GAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + IN E +
Sbjct: 243 DANKAVEEINGTELN 257
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 39/268 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F ++ A RA+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N + E +K+ + YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ +++D G SRGF FV F H DA A + + ++ +TV V A+
Sbjct: 217 TLSVKVMTD--SSGKSRGFGFVSFEKHEDANKAVEEINGTEL----NGKTVFVGRAQKKM 270
Query: 319 EPDPEI------MAHVKTVFLDGVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMS 365
E E+ + + GV + K + ++R + +G + + +
Sbjct: 271 ERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LE 328
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNK 393
+ K +GF+ FS+ E A + +N +
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +F G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 128 KLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 187
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 188 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFSPFG--HVE 245
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L V+ G E+ + V FA+P R
Sbjct: 246 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYVMRGC-EQPLIVRFADPKR 300
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 159 IRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 218
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 219 KLFVASLNKQATAKEIEEIFSPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 277
Query: 212 M 212
+
Sbjct: 278 L 278
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 129 LFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 188
Query: 391 NNK 393
+N+
Sbjct: 189 HNQ 191
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 118 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG--NVLSCKV 175
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G SRGF FV + A A K L V GH ER +
Sbjct: 176 ATD--ENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHID--- 230
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E + +++ + +++ D +G+V V+ ++ K K +GF+
Sbjct: 231 -------EQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKD-EEGKSKGFGFV 282
Query: 376 DFSTHEAAVACINAINNKEFS 396
+F HE+A A ++A+++ E +
Sbjct: 283 NFKDHESAQAAVDALHDTELN 303
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 74 VDKEEDLKSKLLG-ENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLE 132
V K+E+ KSK G NF+ D+ S + D + HD E A + E
Sbjct: 268 VQKDEEGKSKGFGFVNFK----DHESAQAAVDAL----HDTELNGKKLFVTRAQKKAERE 319
Query: 133 DERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
+E R+ AK K+ K ++I L+ D + +R FE G + ++ ++
Sbjct: 320 EELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGT 378
Query: 191 NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228
+KG+ FV +++ E A +A+ EM N ++ K +P++
Sbjct: 379 SKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 100/266 (37%), Gaps = 29/266 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R++G+ FV + E A A+ +
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 213 KNPVICGKRCGT----------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
++ K+ A ++ + F E + D + E
Sbjct: 205 NGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVT 264
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
+ V EG S+GF FV F H A AA L ++ + + V A+ E +
Sbjct: 265 SAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELN----GKKLFVTRAQKKAEREE 320
Query: 323 EIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMSTAKR 369
E+ + ++ + + N ++R + + +G + + R+
Sbjct: 321 ELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTS 379
Query: 370 KDYGFIDFSTHEAAVACINAINNKEF 395
K +GF+ +S+ E A + +NNK
Sbjct: 380 KGFGFVCYSSPEEATKAVAEMNNKML 405
>gi|32482112|gb|AAP84408.1| FCA protein [Triticum aestivum]
Length = 741
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 183
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 241
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G + ++ V FA+P R
Sbjct: 242 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPSI-VRFADPKR 296
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 206 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 264
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 265 EPALAAMNSLSGTYI 279
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 125 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 184
Query: 391 NNK 393
+N+
Sbjct: 185 HNQ 187
>gi|32482110|gb|AAP84407.1| FCA protein [Triticum aestivum]
Length = 736
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+ A L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALVAMNSLSGTYIMRGC-EQPLIVQFADPKR 291
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 201 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 259
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 260 EPALVAMNSLSGTYI 274
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 118/261 (45%), Gaps = 28/261 (10%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+++G + D T+ + ++F +G V +R+ ++ T R+ GYA+V F N A+RAL
Sbjct: 77 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERALDT 136
Query: 212 MKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
M I G C S+ + +L FV N+ + +A+ +G + +
Sbjct: 137 MNFTCIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFG--NILSCK 194
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ-----KPDVVFGHPERTVKVAFAEPLR 318
+ +D G S+G+ +V + A A ++ +V GH ++ R
Sbjct: 195 VAND--PTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQK----------R 242
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
+ P+I ++ +P W + +R + + +G V V+ ++ ++A + +GF+++
Sbjct: 243 QERPDI-EDWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYE 301
Query: 379 THEAAVACINAINNKEFSDGN 399
+ A A + ++ K F N
Sbjct: 302 DADGAHAAVEGLSGKTFKGVN 322
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 28/267 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD + + F G ++ ++ N T ++KGY +V + E A A+ ++
Sbjct: 166 IFVKNLDPSIDNKALYDTFSLFGNILSCKV-ANDPTGQSKGYGYVHYETAEAATEAINKI 224
Query: 213 KNPVICG---------KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+I G KR ED +V N+ WT ++++ + +G N
Sbjct: 225 NGMLIAGTEVFVGHFQKRQERPDIEDWTNCYVKNLPTQWTDADLRREFEPFGQV---NSA 281
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDP 322
+V + +RGF FV + A AA + L K + + V A+ E +
Sbjct: 282 VVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERER 341
Query: 323 EIMAHVKTVFLDGVPPH-------------WKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E+ + L+ + + ++ ++R+ YG + + R+ ST
Sbjct: 342 ELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRD-STGNS 400
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFS 396
+ +GF+ FST E A + +N K +
Sbjct: 401 RGFGFVCFSTPEEAATAVAEMNGKLIT 427
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD + T + +F ++G+V+ VR+ ++ ++ R+ GY +V F+N + A RAL
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 89
Query: 210 --TEMKN---PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
T + N ++ R + +F+ N+ +A+ +G + + +
Sbjct: 90 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG--NILSCKV 147
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+G+ FV F A A ++L G +V LR+ + E
Sbjct: 148 ATD--SSGQSKGYGFVQFDNEESAQKAIEKLN------GMLLNDKQVYVGPFLRKQERES 199
Query: 325 M---AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A VF+ + ++++++ +G + V+ R+ K K +GF++F +
Sbjct: 200 TADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRD-GDGKSKCFGFVNFENAD 258
Query: 382 AAVACINAINNKEFSD 397
A + A+N K+F D
Sbjct: 259 DAARAVEALNGKKFDD 274
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F + +V+ VR+ ++ +TN + GY +V ++N E A++A+ ++
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 213 KNPVICGKRC--------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK +A LFV N+ + + + + G + + +
Sbjct: 103 NYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGT--IVSCKV 160
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D H G SRG+ FV F A A ++L G ++ LR+ + E
Sbjct: 161 AAD--HMGQSRGYGFVQFDTEDSAKNAIEKLN------GKVLNDKQIFVGPFLRKEERES 212
Query: 325 MA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A V++ + +++++ YG + V+ R+ K + +GF++F E
Sbjct: 213 AADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPE 271
Query: 382 AAVACINAINNKEFSD 397
A + A+N K+F D
Sbjct: 272 DAARAVEALNGKKFDD 287
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 31/302 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD+ + + + F G ++ ++ + +++GY FV+F ++ AK A+ ++
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADH-MGQSRGYGFVQFDTEDSAKNAIEKL 189
Query: 213 KNPVICGKRCGTAP---SEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
V+ K+ P E+ ++ ++V N+ T + +K YG +
Sbjct: 190 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYG--SIS 247
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
+ ++ D +G SR F FV F DA A + L F E V A + RE
Sbjct: 248 SAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKK--FDDKEWYVGKAQKKSEREL 303
Query: 321 DP----EIMAHVKTVFLDGVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E + DG+ + K + ++R+ +G + + R+ S
Sbjct: 304 ELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTS 362
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIG 429
K GF+ FS A +N +N K V L R K QA M F G
Sbjct: 363 KGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPG 422
Query: 430 HG 431
G
Sbjct: 423 VG 424
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 48 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 107
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 108 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G S+G+ FV + A A K L V GH ER K+
Sbjct: 166 ATD--EHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKI---- 219
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A +++ + P + + + G+V V+ R+ + + +GF+
Sbjct: 220 ------DEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRD-EEGRSRGFGFV 272
Query: 376 DFSTHEAAVACINAINNKEF 395
++ THE A ++ +N+K+F
Sbjct: 273 NYETHEEAQKAVDNLNDKDF 292
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEP-----------ADEAETLEDERRELNAIAKDRKIKKEH--E 152
V+Y H+E + A D++ + A + E+E R+ + A+ K+ K
Sbjct: 272 VNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLN 331
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD D E +R FE G + ++ ++ +KG+ FV +++ E A +A+ EM
Sbjct: 332 LYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRD-DKGVSKGFGFVCYSSPEEASKAVAEM 390
Query: 213 KNPVICGK 220
N +I K
Sbjct: 391 NNKMIGSK 398
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 43/271 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + N +KGY FV + E A+ A+ +
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKNV 194
Query: 213 KNPVICGKRCGTA--------------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ L++ NI T E + ++ G
Sbjct: 195 NGMLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQG--- 251
Query: 259 VENINLVSDIQH---EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
N+ S + EG SRGF FV + H +A A L D H R + V+ A+
Sbjct: 252 ----NVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDF---HG-RKLFVSRAQ 303
Query: 316 PLREPDPEI-MAHVKT------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
E + E+ AH + +++ + + ++R + + +G + + R
Sbjct: 304 KKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMR 363
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ K +GF+ +S+ E A + +NNK
Sbjct: 364 D-DKGVSKGFGFVCYSSPEEASKAVAEMNNK 393
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ T K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 28/259 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD + T + +F ++G+V+ VR+ ++ +T R+ GY +V ++N + A RAL
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 210 --TEMKN---PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
T + N ++ R + +F+ N+ +A+ +G N+
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG-------NI 148
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
+S + G S+G+ FV F A A ++L G +V LR+ +
Sbjct: 149 LSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLN------GMLLNDKQVYVGPFLRKQE 202
Query: 322 PEIM---AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
E A VF+ + +++++ +G + V+ R+ K K +GF++F
Sbjct: 203 RESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFE 261
Query: 379 THEAAVACINAINNKEFSD 397
+ + A + A+N K+ D
Sbjct: 262 STDDAARAVEALNGKKIDD 280
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 33/290 (11%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K + IFI LD+ + + F G ++ ++ + + ++KGY FV+F
Sbjct: 112 RDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFD 170
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP----SEDNDT--------LFVGNICNTWTKEAIK 248
+E A++A+ ++ ++ K+ P E T +FV N+ + T + +K
Sbjct: 171 TEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELK 230
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFG 303
+ ++G + + ++ D +G S+ F FV F DA A K++ + G
Sbjct: 231 KTFGEFGT--ITSAVVMRD--GDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVG 286
Query: 304 HPERT------VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
++ +K+ F + ++E + +++ + + ++++ YG +
Sbjct: 287 KAQKKSEREHELKIKFEQSMKEAADKYQG--ANLYVKNLDDSIADEKLKELFSSYGTITS 344
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ + R GF+ FST E A + +N K + V L R
Sbjct: 345 CKVMRDPNGVSRGS-GFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQR 393
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V VR+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I GK C S+ + L F+ N+ +A+ +G V + +
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGT--VLSCKV 193
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D GLS+G+ FV + + A AA K L V G ER K+
Sbjct: 194 ATD--DSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKID--- 248
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ +H +++ + E + +G + V+ ++ K +GF+
Sbjct: 249 -------EMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKD-EEGNSKGFGFV 300
Query: 376 DFSTHEAAVACINAINNKEF 395
+F HE A + ++NKE
Sbjct: 301 NFENHEDAQRAVEELDNKEI 320
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD + +E+ +F + G + + K+ N +KG+ FV F N E A+RA+ E+
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGN-SKGFGFVNFENHEDAQRAVEEL 315
Query: 213 KN------PVICGKRCGTAPSED------------------NDTLFVGNICNTWTKEAIK 248
N PV G+ + E+ L++ N+ + E ++
Sbjct: 316 DNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLR 375
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
+ + +G + + ++ D +G S+GF FV FS +A A +
Sbjct: 376 AEFEPFGT--ITSCKVMRD--EKGTSKGFGFVCFSSPDEATRAMSEM 418
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 110/264 (41%), Gaps = 29/264 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G V+ ++ + + +KGY FV + + E A+ A+ +
Sbjct: 164 IFIKNLDQGIDNKALHDTFAAFGTVLSCKVATD-DSGLSKGYGFVHYDSNEAAEAAIKAV 222
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI-------- 262
++ K+ G S + + + +T +K + G E E +
Sbjct: 223 NGMLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPIT 282
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
+ V EG S+GF FV F H DA A + L + + G P V V A+ E +
Sbjct: 283 SAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKE-IHGKP---VFVGRAQKKSEREE 338
Query: 323 EIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E+ + +++ + + ++R + + +G + + R+
Sbjct: 339 ELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-EKGTS 397
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ + A ++ +NNK
Sbjct: 398 KGFGFVCFSSPDEATRAMSEMNNK 421
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 47 YKEETDEDPEEEELENVDDKEEPETVPV-DKEEDLKSKLLG-------ENFQSELDDYGS 98
Y + D + EEE E + + P T V K+E+ SK G E+ Q +++ +
Sbjct: 258 YVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDN 317
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH--EIFIG 156
E +G V G A + E+E R+ AK K K ++I
Sbjct: 318 KEIHGKPVFVGR--------------AQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIK 363
Query: 157 GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216
L+ D E +R FE G + ++ ++ +KG+ FV F++ + A RA++EM N +
Sbjct: 364 NLEDDVDDEKLRAEFEPFGTITSCKVMRD-EKGTSKGFGFVCFSSPDEATRAMSEMNNKI 422
Query: 217 ICGKRCGTAPSEDNDT 232
+ K A ++ D
Sbjct: 423 VGTKPLYVALAQRKDV 438
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
V+ GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ ++ G S +G +T IK LK+ + + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KVAFAE 315
++ G S+GF FV + H DA A K + + G ++ V +
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
+ E ++ + V ++ + + ++R + +G + + + + K +G
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFG 336
Query: 374 FIDFSTHEAAVACINAINNK 393
F+ FS+ E A + +N +
Sbjct: 337 FVCFSSPEEATKAVTEMNGR 356
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +R+ F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+++G L DA++ + ++F +G V +R+ ++ T R+ GYA+V F N A+RAL
Sbjct: 13 SLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDT 72
Query: 212 MKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
M +I K C S+ + TL FV N+ + +A+ +G + +
Sbjct: 73 MNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFG--NILSCK 130
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
+ +D G S+G+ +V + A A ++ + ++ V V +R +
Sbjct: 131 VATD--EAGRSQGYGYVHYESEDAATDAINKINSMTIC----DKEVYVGHF--VRRTERS 182
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
+ +++ P W E +R + +G I + + A +G+++F H+AA
Sbjct: 183 GQSDWTNLYVKNFPADWDEETLRKAFETFGA---ITSCKAAAAADGSAFGWVNFEAHDAA 239
Query: 384 VACINAIN 391
VA ++A+N
Sbjct: 240 VAAMDALN 247
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 38/271 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD + + F G ++ ++ + R++GY +V + +++ A A+ ++
Sbjct: 102 VFVKNLDASIDHKALFDTFSLFGNILSCKVATD-EAGRSQGYGYVHYESEDAATDAINKI 160
Query: 213 KNPVICGK---------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ IC K R + D L+V N W +E +++ + +G
Sbjct: 161 NSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAA 220
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL----QKPDVVFGHPERTVK----VAFAE 315
+D F +V F H A+AA L + P G P T+K V A+
Sbjct: 221 AAAD------GSAFGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPT-TLKAPLFVGRAQ 273
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQI-------------RDQIKGYGDVIRIVLAR 362
E + E+ A ++ + + N R+ YG + + R
Sbjct: 274 KKIERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMR 333
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+T + +GF+ FS+ E A + +NNK
Sbjct: 334 EPATGTSRGFGFVCFSSPEEAAKAVTEMNNK 364
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 133 DERRELNA---IAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS 187
+ REL A AK +IKK +F+ LD + +R+ F G + R+ + +
Sbjct: 277 ERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPA 336
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
T ++G+ FV F++ E A +A+TEM N ++ GK
Sbjct: 337 TGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGK 369
>gi|30690648|ref|NP_850472.1| flowering time control protein-like protein [Arabidopsis thaliana]
gi|50897178|gb|AAT85728.1| At2g47310 [Arabidopsis thaliana]
gi|53793649|gb|AAU93571.1| At2g47310 [Arabidopsis thaliana]
gi|110738579|dbj|BAF01215.1| putative FCA-related protein [Arabidopsis thaliana]
gi|330255732|gb|AEC10826.1| flowering time control protein-like protein [Arabidopsis thaliana]
Length = 512
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH---AKRA 208
++++ + + AT+ D+R+VFE+ G V E+ L K+ T Y F+K+ E A A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 209 LTEMKN------PVIC------GKRCGTAPSE--DNDTLFVGNICNTWTKEAIKQKLKDY 254
LTE PV +R G AP + DN L+V + TK + + Y
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRY 230
Query: 255 GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314
G+ +E+I + D + RG+AFV FSC A+AA K L + G ++ + V FA
Sbjct: 231 GI--IEDIYMALD--DMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGS-DQPLIVRFA 285
Query: 315 EP 316
+P
Sbjct: 286 DP 287
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ S + L F+ N+ N+ +A+ +G +I
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG-----SILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +E SRGF FV F H A A + + +R V V + ++ + E+
Sbjct: 128 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + E ++D +G + + R+ S + + +GFI+F HE
Sbjct: 184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 74/366 (20%), Positives = 136/366 (37%), Gaps = 73/366 (19%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 17 DLHPDVTEAMLYEMF----SPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 135 RRELNAIAKDRKIKKEHE-----------IFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
E+ + +I H IFI L+ + + F G ++ ++
Sbjct: 73 NFEMIK-GQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT 243
N +R G+ FV F E A++A+ M ++ ++ +FVG+ +
Sbjct: 132 YNEHGSR--GFGFVHFETHEAAQKAINTMNGMLL-----------NDRKVFVGHFKSRQK 178
Query: 244 KEAIKQKLKDYGVEGVENINLVSDIQHEGL----------------------SRGFAFVM 281
+EA + + G + NL D+ +GL SRGF F+
Sbjct: 179 REA-ELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFIN 237
Query: 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI------MAHVKTVFLDG 335
F H +A A + +V + + V A+ E E+ M + G
Sbjct: 238 FEKHEEAQKAVDHMNGKEV----SGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQG 293
Query: 336 VPPHWK-------ENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACI 387
V + K ++++++ YG I A+ M+ ++ K +GF+ FS+ E A +
Sbjct: 294 VNLYVKNLDDSINDDRLKEVFSTYGV---ITSAKVMTESSHSKGFGFVCFSSPEEATKAV 350
Query: 388 NAINNK 393
+N +
Sbjct: 351 TEMNGR 356
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL--- 209
+++G LD + T + +F ++G+V+ VR+ ++ ++ R+ GY +V F+N + A RAL
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 92
Query: 210 --TEMKN---PVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
T + N ++ R + +F+ N+ +A+ +G + + +
Sbjct: 93 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG--NILSCKV 150
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G S+G+ FV F A A ++L G +V LR+ + E
Sbjct: 151 ATD--SSGQSKGYGFVQFDNEESAQKAIEKLN------GMLLNDKQVYVGPFLRKQERES 202
Query: 325 M---AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A VF+ + ++++++ +G + V+ R+ K K +GF++F +
Sbjct: 203 AADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRD-GDGKSKCFGFVNFENAD 261
Query: 382 AAVACINAINNKEFSD 397
A + A+N K F D
Sbjct: 262 DAARAVEALNGKNFDD 277
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 33/290 (11%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K + IFI LDR + + F G ++ ++ + S+ ++KGY FV+F
Sbjct: 109 RDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFD 167
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP---------SEDN---DTLFVGNICNTWTKEAIK 248
N+E A++A+ ++ ++ K+ P + D + +FV N+ + T + +K
Sbjct: 168 NEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELK 227
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-----VFG 303
++G + + ++ D +G S+ F FV F DA A + L + G
Sbjct: 228 NTFGEFGT--ITSAVVMRD--GDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVG 283
Query: 304 HPERT------VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
++ +K F + ++E + +++ + + ++++ +G +
Sbjct: 284 KAQKKSERENELKQRFEQSMKEAADKYQG--ANLYVKNLDDSIGDEKLKELFSPFGTITS 341
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ + R GF+ FST E A + +N K V L R
Sbjct: 342 CKVMRDPNGLSRGS-GFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQR 390
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + +VF IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 166
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D G S+G+ FV + A A K L V GH ER K+
Sbjct: 167 ATD--EHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKI---- 220
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A +++ + P + + +G++ L+++ K + +GF+
Sbjct: 221 ------DEMKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKD-EEGKSRGFGFV 273
Query: 376 DFSTHEAAVACINAINNKEFS 396
+F +HE A A + +++ E +
Sbjct: 274 NFESHEQAAAAVETLHDTEIN 294
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 31/279 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + N +KGY FV + E A+ A+ +
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKSV 195
Query: 213 KNPVICGKRCGTA---PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI-----NL 264
++ K+ P ++ + + + +T +K + G EG E + N+
Sbjct: 196 NGMLLNDKKVFVGHHIPRKERQSK-IDEMKAQYTNIYVKNLDPELGQEGFEELFGKFGNI 254
Query: 265 VSDI---QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
S EG SRGF FV F H A AA + L ++ R + VA A+ E +
Sbjct: 255 TSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEI----NGRKLYVARAQKKSERE 310
Query: 322 PEIMAHVKT-------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
E+ + +++ + + ++R + + +G + + R+
Sbjct: 311 DELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTS 370
Query: 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K +GF+ FS+ + A ++ +NNK V L R
Sbjct: 371 -KGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQR 408
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 132 EDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
EDE R+ AK K+ K ++I L+ D E +R FE G + ++ ++ N
Sbjct: 310 EDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRD-EKN 368
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
+KG+ FV F++ + A +A++EM N +I K
Sbjct: 369 TSKGFGFVCFSSPDEATKAVSEMNNKMIGSK 399
>gi|32482383|gb|AAP84381.1| FCA protein [Triticum aestivum]
Length = 737
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I + +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIGEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAATNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIGEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A + I
Sbjct: 262 EPALAATNSLSGTYI 276
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 149
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 150 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 205
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ ++ +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 206 GAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 264
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 265 DANKAVEEMNGKEMS 279
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 180
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N + +K+ +G
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFG--K 238
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 239 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 297 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 354
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 355 KGFGFVCFSSPEEATKAVTEMNGR 378
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 318 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 375
Query: 213 KNPVICGK 220
++ K
Sbjct: 376 NGRIVGSK 383
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+L+VG++ + T+ + +K G V +I + D+ S G+A+V F DA A
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNFQQPADAERA 90
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKENQIRDQIK 350
+ DV+ G P R + + DP + + V VF+ + + D
Sbjct: 91 LDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 142
Query: 351 GYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 143 AFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 187
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
V+ GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ ++ G S +G +T IK LK+ + + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KVAFAE 315
++ G S+GF FV + H DA A K + + G ++ V +
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
+ E ++ + V ++ + + ++R + +G + + + + K +G
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFG 336
Query: 374 FIDFSTHEAAVACINAINNK 393
F+ FS+ E A + +N +
Sbjct: 337 FVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + F+ G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G + + +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG--NILSCKV 121
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA---EPLREPD 321
V DI S+GF FV + A A ++K + + ++ F + +RE
Sbjct: 122 VCDING---SKGFGFVHYESDESAQRA---IEKVNGMLMEDKKVFVARFKSRNDRMREFG 175
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
+ H +F+ +P W + + + +G+V+ + + +T K +GFI F H+
Sbjct: 176 -DAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 382 AAVACINAINNKEF 395
A A + ++ KE
Sbjct: 235 QAEAAVEIMHEKEI 248
>gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica napus]
Length = 384
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E+VR FE+ G V+EV K+ T + +G FVK+A E A RA+
Sbjct: 106 KLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRAIRA 165
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N + G D LFVG++ T+ +++ +G VE
Sbjct: 166 LHNQITLPGGTGLVQVRYADGERERIGAVEFKLFVGSLNKQATENEVEELFLQFGR--VE 223
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ L+ D + SRG FV +S AMAA L + G + + V FA+P R P
Sbjct: 224 DVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFADPKR-P 279
Query: 321 DP 322
P
Sbjct: 280 KP 281
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+ +V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 188 RERIGAVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRD-EYRQSRGCGFVKYSSK 246
Query: 203 EHAKRAL 209
E A A+
Sbjct: 247 ETAMAAI 253
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 26/257 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 44 LYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I + C S+ + L F+ N+ +A+ +G V + +
Sbjct: 104 NYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 161
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ------KPDVVFGHPERTVKVAFAEPLR 318
+D G S+G+ FV + A A K + K V H R + + + +R
Sbjct: 162 ATD--EHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDEMR 219
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
AH +++ + P + + + K YG V +L R+ + +GF++F
Sbjct: 220 -------AHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRD-DQGRNLGFGFVNFE 271
Query: 379 THEAAVACINAINNKEF 395
THE A ++A++ +F
Sbjct: 272 THEEAQKAVDALHESDF 288
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 109/282 (38%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + N +KGY FV + E A+ A+ +
Sbjct: 132 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKSV 190
Query: 213 KNPVICGKRCGTAPSEDN--------------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ P L+V NI T E + K YG
Sbjct: 191 NGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYG--Q 248
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
V++ L D Q G + GF FV F H +A A L + D H R + VA A+
Sbjct: 249 VQSSLLKRDDQ--GRNLGFGFVNFETHEEAQKAVDALHESDF---H-GRKLYVARAQKKA 302
Query: 319 EPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ +++ + + ++R + + +G + + R+
Sbjct: 303 EREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRD-E 361
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K K +GF+ +S + A + +NNK V L R
Sbjct: 362 RGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQR 403
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 89 FQSEL---DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP-----------ADEAETLEDE 134
QS L DD G +G V++ H+E + A D + E A + E E
Sbjct: 249 VQSSLLKRDDQGRNLGFG-FVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREAE 307
Query: 135 RRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
R+ A+ ++ K ++I L+ D E +R FE G + R+ ++ ++K
Sbjct: 308 LRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRD-ERGKSK 366
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICGK 220
G+ FV ++ + A +A+ EM N +I K
Sbjct: 367 GFGFVCYSAPDEATKAVAEMNNKMIGSK 394
>gi|32482085|gb|AAP84397.1| FCA protein [Triticum aestivum]
Length = 740
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+ E A+RA+
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYTTSEEAERAIRA 183
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 241
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 242 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVLFADPKR 296
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 206 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 264
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 265 EPALAAMNSLSGTYI 279
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 125 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYTTSEEAERAIRAL 184
Query: 391 NNK 393
+N+
Sbjct: 185 HNQ 187
>gi|32482130|gb|AAP84415.1| FCA protein, partial [Triticum aestivum]
Length = 743
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 127 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 186
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I + +G VE
Sbjct: 187 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIGEIFAPFG--HVE 244
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 245 DVYIMKDGMRQ--SRGSGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 299
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 209 KERHGSIEHKLFVASLNKQATAKEIGEIFAPFGHVEDVYIMKD-GMRQSRGSGFVKFSSK 267
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 268 EPALAAMNSLSGTYI 282
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 128 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 187
Query: 391 NNK 393
+N+
Sbjct: 188 HNQ 190
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E SRGF FV F + A A + ++ +R V V + RE E+
Sbjct: 128 CKVVCDEHGSRGFGFVHFETYEAAQQAINTMN--GMLLN--DRKVFVGHFKSRRERAAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S+ + + +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRCFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
>gi|32482367|gb|AAP84376.1| FCA protein [Triticum aestivum]
Length = 735
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 119 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCRFVKYATSEEAERAIRA 178
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 179 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 236
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 237 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 291
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 201 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 259
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 260 EPALAAMNSLSGTYI 274
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 120 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCRFVKYATSEEAERAIRAL 179
Query: 391 NNK 393
+N+
Sbjct: 180 HNQ 182
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
V+ GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEMS 257
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ ++ G S +G +T IK LK+ + + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KVAFAE 315
++ G S+GF FV + H DA A K + + G ++ V +
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYG 373
+ E ++ + V ++ + + ++R + +G + + + + K +G
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFG 336
Query: 374 FIDFSTHEAAVACINAINNK 393
F+ FS+ E A + +N +
Sbjct: 337 FVCFSSPEEATKAVTEMNGR 356
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +R+ F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|32482392|gb|AAP84385.1| FCA protein [Triticum aestivum]
Length = 738
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++D R +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 123 KLFVGSVPRTANEDDARPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRT 182
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 183 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNRQATAKEIEEIFAPFG--HVE 240
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L + G E+ + V FA+P R
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSG-TYIMGGCEQPLIVRFADPKR 295
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 99 YEDYGDCVDY--------GEHDEEEFADDDMEEPADEA-ETLEDERRELNAIA------- 142
+ED+GD ++ GE F E A+ A TL ++ A+
Sbjct: 142 FEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRTLHNQCTIPGAMGPVQVRYA 201
Query: 143 ---KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF 199
K+R EH++F+ L+R AT +++ ++F G V +V + K+ +++G FVKF
Sbjct: 202 DGEKERHGSIEHKLFVASLNRQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKF 260
Query: 200 ANKEHAKRALTEMKNPVICG 219
++KE A A+ + I G
Sbjct: 261 SSKEPALAAMNSLSGTYIMG 280
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 34/285 (11%)
Query: 149 KEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+EH + I L +R + G ++E+ T + A V+F++ A
Sbjct: 781 REHCSVLISSLPPTTDAASIRTLLRGCGRIVELSGPITLGT---ESAALVEFSDPASAAS 837
Query: 208 ALTEMKNP---------VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
ALT P + G +C TLFV N W +I+ YG+
Sbjct: 838 ALTRHSKPLPTSSSPVSIFIGWKC---------TLFVTNFPEEWDDSSIRSTFSPYGL-- 886
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ N+ S + SR F +V F+ A AA + L +V G RT+ VA ++P R
Sbjct: 887 IFNVRWPS--KRFSSSRRFCYVQFTTPSSASAAIEALNGKEVAEG---RTLNVALSDPSR 941
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ + K +F+ G+P + + +++ + YG V + L RN R GF+DF
Sbjct: 942 RKQRSDANENAKELFVSGLPRNITDEELKTYFEAYGKVTGVRLLRNAEGGLR-GIGFVDF 1000
Query: 378 STHEAAVACINAINNKEFSDGNSKVKLR-ARLSNPMPKTQAVKGG 421
A + +N+ ++ V L +R SN K V GG
Sbjct: 1001 ENALDATRAMKELNSTKWRAKTISVTLADSRSSN--SKQSGVGGG 1043
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 134 ERRELNAIAKDRKIKKEH--------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN 185
E R LN D +K+ E+F+ GL R+ T E+++ FE G+V VRL +N
Sbjct: 928 EGRTLNVALSDPSRRKQRSDANENAKELFVSGLPRNITDEELKTYFEAYGKVTGVRLLRN 987
Query: 186 FSTNRNKGYAFVKFANKEHAKRALTEMKN 214
+ +G FV F N A RA+ E+ +
Sbjct: 988 -AEGGLRGIGFVDFENALDATRAMKELNS 1015
>gi|452981460|gb|EME81220.1| hypothetical protein MYCFIDRAFT_211785, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 353
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 131 LEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR 190
+++E R+ A K IK++ ++FIGGL+ + T E +++ F + GEV+E + ++ +T R
Sbjct: 83 VQNEFRDTPADEKPIGIKEDGKMFIGGLNWETTDESLKQYFSQFGEVVECTVMRDGATGR 142
Query: 191 NKGYAFVKFANKEHAKRALTE---MKNPVICGKRCGTAPSEDND---TLFVGNICNTWTK 244
++G+ F+ F + ++ + + + +I KR P ++ + +FVG + T+
Sbjct: 143 SRGFGFLTFKDPKNVNTVMVKEHSLDGKLIDPKRA--IPRDEQERTAKIFVGGVSQEATE 200
Query: 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304
K +G V + L+ D + G RGF FV F +A + L+ P + G
Sbjct: 201 ADFKDFFMKFGR--VLDATLMMD-KDTGRPRGFGFVTFDSE---LAVERTLEGPLAILGK 254
Query: 305 PERTVKVAFAEP 316
P ++V A+P
Sbjct: 255 P---IEVKRAQP 263
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 135/280 (48%), Gaps = 26/280 (9%)
Query: 128 AETLEDER-RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF 186
AET+ R RE+N AK R +++G L D T++ + K F +G V+ +R+ ++
Sbjct: 183 AETVHAGRAREMNVAAKYRM----ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDL 238
Query: 187 STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNI 238
T R+ GYA+V F + A++AL M VI GK S+ + L F+ N+
Sbjct: 239 VTRRSLGYAYVNFLHVADAQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNL 298
Query: 239 CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298
+ + + + +G + + ++SD Q S+G+AFV F + AA + +++
Sbjct: 299 DKSIDNKTLYEHFSTFG--KILSSKVMSDDQG---SKGYAFVHFQ---NQSAADRAIEEM 350
Query: 299 DVVFGHPERTVKVAFAEPLREPDPEI---MAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355
+ R V V+ + ++ + E+ + V++ + ++++ YG
Sbjct: 351 NGTLLKNCR-VFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTT 409
Query: 356 IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ + + + S+ K K +GF+ F++HEAA + +N K+
Sbjct: 410 LSVKVMTD-SSGKSKGFGFVSFASHEAAKNAVEEMNGKDI 448
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 120/280 (42%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + + F G+++ ++ + +KGYAFV F N+ A RA+ EM
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 350
Query: 213 KNPVICGKRCGTA--------------PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ R + + + +++ N + +K+ YG
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGT-- 408
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV----VF-GHPERTV---- 309
++ +++D G S+GF FV F+ H A A + + D+ +F G ++ +
Sbjct: 409 TLSVKVMTD--SSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQA 466
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E LR+ VK +++ + + ++R + +G + R+ + +
Sbjct: 467 ELKQMF-EQLRQERFRRCRGVK-LYIKNLDDTIDDEKLRKEFASFGSISRVKVMQE--EG 522
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +G I FS+HE A+ + +N + + L R
Sbjct: 523 RSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQR 562
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 117 ADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGE 176
A +E A+ + E R+E + R +K ++I LD E +RK F G
Sbjct: 458 AQKKIERQAELKQMFEQLRQE--RFRRCRGVK----LYIKNLDDTIDDEKLRKEFASFGS 511
Query: 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDND 231
+ V++ + R+KG+ + F++ E A +A+TEM ++ K A ++ N+
Sbjct: 512 ISRVKVMQE--EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNE 564
>gi|32482069|gb|AAP84391.1| FCA protein [Triticum aestivum]
Length = 732
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+ F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 116 KFFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 175
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 176 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 233
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 234 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 288
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 198 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 256
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 257 EPALAAMNSLSGTYI 271
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A++
Sbjct: 118 FVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRALH 177
Query: 392 NK 393
N+
Sbjct: 178 NQ 179
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 38/263 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D + + + F G + +R+ ++ T R+ GYA+V F A+RAL +
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK C S+ + +L F+ N+ +AI +G N+
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFG-------NI 133
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVA 312
+S + G S+G+AFV F A A ++ L V GH ER K+
Sbjct: 134 LSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIG 193
Query: 313 FAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY 372
+ A +++ +++ RD + G ++ V+ R+ + K + +
Sbjct: 194 ----------NLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGF 242
Query: 373 GFIDFSTHEAAVACINAINNKEF 395
GF+ + THEAA + +N KEF
Sbjct: 243 GFVSYETHEAAQKAVETLNEKEF 265
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 25/262 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L++D + + F G ++ ++ + + N +KGYAFV F +E A RA+ ++
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGN-SKGYAFVHFETQEAANRAIEKV 167
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIKQ--------KLKDYGVEGVENI 262
++ GK+ G S +GN+ +T +K + +D + + +
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIV 227
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD-------VVFGHPERTVKVAFAE 315
+ V G SRGF FV + H A A + L + + V +
Sbjct: 228 SCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRR 287
Query: 316 PLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKD 371
+ E+M + V ++ + + ++R + +G I A+ MS K +
Sbjct: 288 QYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGT---ITSAKVMSDEKGISRG 344
Query: 372 YGFIDFSTHEAAVACINAINNK 393
+GF+ FS+ E A + +N +
Sbjct: 345 FGFVCFSSPEEATKAVTEMNGR 366
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + ++ + +F +IG+V+ +R+ ++ T R+ GYA+V + N + A RAL +
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 213 KNPVICGK--------------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ GK + GTA +F+ N+ +A+ +G
Sbjct: 66 NFTPVNGKAVRIMFSHRDPSIRKSGTA------NIFIKNLDRAIDNKALHDTFVSFG--N 117
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + +D G S+G+ FV F A A D V G +V +R
Sbjct: 118 ILSCKVATD--SNGQSKGYGFVQFEQEESAQVAI------DKVNGMLVAEKQVFVGPFVR 169
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
+ E VF+ + ++++++ +G + V+ R+ S K K +GF++F
Sbjct: 170 RQEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRD-SDGKSKCFGFVNFE 228
Query: 379 THEAAVACINAINNKEFSD 397
+ A + +N K+ D
Sbjct: 229 NPDEAAKAVVGLNGKKIED 247
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N +RA+ ++
Sbjct: 47 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 106
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G NI
Sbjct: 107 NYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG-----NILS 161
Query: 265 VSDIQHEGLSRGFAFVMFSC---------HVDAMAAYKRLQKPDVVFGH----PERTVKV 311
++ S G+ FV + HV+ M L V GH ER K+
Sbjct: 162 CKVATNDTGSLGYGFVHYETAEAAEAAIKHVNGML----LNDKKVYVGHHIPRKERQAKI 217
Query: 312 AFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371
E A V+ V P + Q YG + VL R+ K K
Sbjct: 218 E----------ESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRD-DDGKSKG 266
Query: 372 YGFIDFSTHEAAVACINAINNKEF 395
+GF++F HE A ++ +++ +F
Sbjct: 267 FGFVNFEDHEEAQKAVDELHDSDF 290
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 109/278 (39%), Gaps = 30/278 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ N + + GY FV + E A+ A+ +
Sbjct: 135 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTGSL--GYGFVHYETAEAAEAAIKHV 192
Query: 213 KNPVICGKRCGT----------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENI 262
++ K+ A E++ F C E ++ + +
Sbjct: 193 NGMLLNDKKVYVGHHIPRKERQAKIEESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKIT 252
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
+ V +G S+GF FV F H +A A L D H ++ VA A+ E +
Sbjct: 253 SCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDF---HGQKLF-VARAQKKSEREE 308
Query: 323 EI-----------MAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E+ +A + V +L +P + + ++R++ +G + + R S R
Sbjct: 309 ELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVSR 368
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+GF+ +S E A ++ +N K + V L R
Sbjct: 369 -GFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQR 405
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 143 KDRKIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
K+R+ K E ++ +D + T E K+F G++ L ++ ++KG+ F
Sbjct: 211 KERQAKIEESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRD-DDGKSKGFGF 269
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDND------------------------T 232
V F + E A++A+ E+ + G++ A ++
Sbjct: 270 VNFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 329
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
L++ NI ++ E ++++ +G + + ++ G+SRGF FV +S +A A
Sbjct: 330 LYLKNIPESYDDERLREEFAPFGT--ITSCKIMR--APSGVSRGFGFVCYSVPEEANKAV 385
Query: 293 KRL 295
+
Sbjct: 386 SEM 388
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ ++ + ++F ++G+V+ +R+ ++ T R+ GYA+V + N + A RAL +
Sbjct: 26 LYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELL 85
Query: 213 KNPVICGK--------------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ GK + GTA +F+ N+ + +A+ +G
Sbjct: 86 NFNAVNGKPIRIMFSHRDPSIRKSGTA------NIFIKNLDKSIDNKALHDTFAAFGT-- 137
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + +D G S+G+ FV F A A ++K + + + ++ F
Sbjct: 138 ILSCKVATD--PSGQSKGYGFVQFEQEESAQTA---IEKVNGMLLNDKQVFVGPFVRRQE 192
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
+++ V++ + +++++ + YG + V+ R+ + K K +GF++F
Sbjct: 193 RDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRD-NEGKSKCFGFVNFE 251
Query: 379 THEAAVACINAINNKEFSD 397
+ A + A+N K+F +
Sbjct: 252 HADDAAKAVEALNGKKFDE 270
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 143 KDRKIKKE--HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K IFI LD+ + + F G ++ ++ + + ++KGY FV+F
Sbjct: 102 RDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATD-PSGQSKGYGFVQFE 160
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP------------SEDNDTLFVGNICNTWTKEAIK 248
+E A+ A+ ++ ++ K+ P + ++V N+ ++ T + +K
Sbjct: 161 QEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELK 220
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPE 306
+ + YG + + ++ D +EG S+ F FV F DA A + L +K D E
Sbjct: 221 KVFEAYG--PISSAVVMRD--NEGKSKCFGFVNFEHADDAAKAVEALNGKKFD------E 270
Query: 307 RTVKVAFAEPLREPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYG 353
+ V A+ E + E+ A + ++L + + ++R+ YG
Sbjct: 271 KEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYG 330
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
++ + R+ + + GF+ FS+ + A + +N K V L R
Sbjct: 331 TIVSCKVMRD-PQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQR 383
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+ED+R +FE G V+EV L K+ T +++G F+K+A E A +A+
Sbjct: 158 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 217
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ + + +++ YG +E
Sbjct: 218 LHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGR--IE 275
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D Q + SRG FV +S A+AA L + G E+ + V FA+P R
Sbjct: 276 DVYLMRDDQKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGC-EQPLIVRFADPKR 330
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 20/133 (15%)
Query: 99 YEDYGDCVDY--------GEHDEEEFADDDMEEPADEAETLEDERRELNAIA-------- 142
+E++G+ V+ G+H F E AD+A R L
Sbjct: 177 FEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYA 236
Query: 143 ---KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF 199
++R E+++F+G L++ A+ ++V +VF + G + +V L ++ +++G FVK+
Sbjct: 237 DGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKY 295
Query: 200 ANKEHAKRALTEM 212
++++ A A+ +
Sbjct: 296 SHRDMALAAINAL 308
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 159 LFVGSVPRTATEEDIRPLFEEHG--NVVEVALIKD-RKTGQHQGCCFIKYATSEEADQAI 215
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + ++ + Y
Sbjct: 216 RALHNRHTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQASVKEVEEVFSKY 271
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G + + L R+ + + GF+ +S + A+A INA+N
Sbjct: 272 GRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALN 309
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 21/254 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + ++D +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEF 395
A + +N KE
Sbjct: 243 DANKAVEEMNGKEI 256
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E SRGF FV F H A A + + +R V V + RE + E+
Sbjct: 128 CKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLL----NDRKVFVGHFKSRREREVEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + E +++D +G ++ + + R++S R +GF++F HE
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSR-GFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N +E S
Sbjct: 243 EAQKAVVNMNGREVS 257
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E +R +FE G VIEV L K+ T + +G FVK+ E A RA+
Sbjct: 53 KLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRN 112
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ +++ +K+ YGV VE
Sbjct: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGV--VE 170
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
++ L+ D + SRG FV +S A+AA L + G ++ + V FA+P ++P
Sbjct: 171 DVYLMRDEMKQ--SRGCGFVKYSHRDMALAAINALNGIFTMRGC-DQPLSVRFADP-KKP 226
Query: 321 DP 322
P
Sbjct: 227 RP 228
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T T+E I+ +++G V + L+ D + G +G FV ++ +A A
Sbjct: 54 LFVGSVPRTATEEIIRPLFEEHG--NVIEVALIKD-KRTGQQQGCCFVKYTTSEEADRAI 110
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + E ++++ Y
Sbjct: 111 RNLHNQHTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQASEKEVKEIFSPY 166
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ + + GF+ +S + A+A INA+N
Sbjct: 167 GVVEDVYLMRD-EMKQSRGCGFVKYSHRDMALAAINALN 204
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|32482061|gb|AAP84388.1| FCA protein [Triticum aestivum]
Length = 737
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIKA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG F FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFAKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V Y +E E A + + + K+R EH
Sbjct: 152 IRDRKTGEQQGCCFVKYATSEEAERAIKALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 211
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G F KF++KE A A+
Sbjct: 212 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFAKFSSKEPALAAMNS 270
Query: 212 MKNPVI 217
+ I
Sbjct: 271 LSGTYI 276
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIKAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + + +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL----NDRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A++ED+R +FE G VIEV L K+ T +++G F+K+A E A +A+
Sbjct: 87 KLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFVG++ T + +++ YG VE
Sbjct: 147 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGR--VE 204
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + + SRG FV +S A+AA L + G E+ + V FA+P R
Sbjct: 205 DVYLMRDEKKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGC-EQPLIVRFADPKR 259
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LFVG++ T ++E I+ +++G V + L+ D + G +G F+ ++ +A A
Sbjct: 88 LFVGSVPRTASEEDIRPLFEEHG--NVIEVALIKD-KKTGQHQGCCFIKYATSEEADQAI 144
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
+ L + G ++V +A+ RE + A +F+ + ++ + Y
Sbjct: 145 RALHNQHTLPGG-VGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATVKEVEEIFSKY 200
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391
G V + L R+ R GF+ +S + A+A INA+N
Sbjct: 201 GRVEDVYLMRDEKKQSR-GCGFVKYSHRDMALAAINALN 238
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|324501271|gb|ADY40568.1| RNA-binding protein squid [Ascaris suum]
Length = 303
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 141 IAKDR-KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF 199
+AKD K ++ +IF+GG+ D T ED+ F + GEV + ++ + +T R++G+AFV+F
Sbjct: 27 VAKDSGKGNEDKKIFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKFDRNTGRSRGFAFVEF 86
Query: 200 ANKEHAKRAL----TEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG 255
A E K AL +KN I A S +N +FVG + + +E ++ YG
Sbjct: 87 ATGEACKAALGTREQTLKNKQI---EVKPAKSRENKKVFVGGLPADFPEEDLRAHFAQYG 143
Query: 256 VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 312
VE+I D Q + R FAF++F + +A + P FG E VK A
Sbjct: 144 K--VEDIEWPFDKQTK-ARRNFAFIVFE---EEESADRASSTPKQTFGSRECDVKKA 194
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
+FVG I T E + +G + ++ G SRGFAFV F+ AA
Sbjct: 40 IFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKF---DRNTGRSRGFAFVEFATGEACKAA- 95
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352
G E+T+K E P K VF+ G+P + E +R Y
Sbjct: 96 ---------LGTREQTLK----NKQIEVKPAKSRENKKVFVGGLPADFPEEDLRAHFAQY 142
Query: 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
G V I + T R+++ FI F E+A
Sbjct: 143 GKVEDIEWPFDKQTKARRNFAFIVFEEEESA 173
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 129 ETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST 188
+TL++++ E+ AK R+ KK +F+GGL D +ED+R F + G+V ++ + T
Sbjct: 101 QTLKNKQIEVKP-AKSRENKK---VFVGGLPADFPEEDLRAHFAQYGKVEDIEWPFDKQT 156
Query: 189 NRNKGYAFVKFANKEHAKRALTEMK 213
+ +AF+ F +E A RA + K
Sbjct: 157 KARRNFAFIVFEEEESADRASSTPK 181
>gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus]
Length = 715
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E+VR FE+ G V+EV K+ T + +G FVK+A E A RA+
Sbjct: 103 KLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRAIRA 162
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N + G D LFVG++ T+ +++ +G VE
Sbjct: 163 LHNQITLPGGTGLVQVRYADGERERIGAVEFKLFVGSLNKQATENEVEELFLQFGR--VE 220
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ L+ D + SRG FV +S AMAA L + G + + V FA+P R
Sbjct: 221 DVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFADPKR 275
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+ +V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 185 RERIGAVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRD-EYRQSRGCGFVKYSSK 243
Query: 203 EHAKRAL 209
E A A+
Sbjct: 244 ETAMAAI 250
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K +FI LD + + F G V+ ++ + S+ ++KGY FV+F
Sbjct: 113 RDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFD 171
Query: 201 NKEHAKRALTEMKNPVICGK------------RCGTAPSEDNDTLFVGNICNTWTKEAIK 248
N+E A+ A+ + +I K R T S ++V N+ T+T E +K
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLK 231
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ YG + + ++ D+ G SR F FV F A AA +RL + + +R
Sbjct: 232 KLFGPYGT--ITSATVMKDV--NGKSRCFGFVNFQNPDSAAAAVERLNGTTI---NNDRV 284
Query: 309 VKVAFAEPLREPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDV 355
+ V A+ E + E+ A ++ ++L + + + +++D +G +
Sbjct: 285 LYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTI 344
Query: 356 IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ + S + K GF+ FST E A +N +N K
Sbjct: 345 TSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGK 381
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/253 (18%), Positives = 110/253 (43%), Gaps = 16/253 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + +E + +F ++ ++ +R+ ++ + + GYA+V FAN + A A+ +
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK S+ + ++ F+ N+ + +A+ +G + L
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAL 156
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
S G S+G+ FV F A A KRL ++ + V + RE
Sbjct: 157 DSS----GQSKGYGFVQFDNEEAAQNAIKRLN--GMLINDKQVYVGLFIRRQERE-QTNG 209
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
V++ + + + ++ YG + + ++++ K + +GF++F ++A
Sbjct: 210 SPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVN-GKSRCFGFVNFQNPDSAA 268
Query: 385 ACINAINNKEFSD 397
A + +N ++
Sbjct: 269 AAVERLNGTTINN 281
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 207 RALTEMKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
+++ PVI G G P N +L+VG++ +E + V + +I +
Sbjct: 11 QSVAAAATPVIAPGVALGGGPFA-NASLYVGDLEGNVNEEQLYDLFSQ--VAQIASIRVC 67
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ-KPDVVFGHPERTVKVAFAEPLREPDPEI 324
D Q + S G+A+V F+ DA A + L P + G P +++ F++ R+P
Sbjct: 68 RD-QTKRSSLGYAYVNFANAQDASNAMELLNFTP--LNGKP---IRIMFSQ--RDPSIRK 119
Query: 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384
H VF+ + + D +G V+ +A + S+ + K YGF+ F EAA
Sbjct: 120 SGH-GNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQ 177
Query: 385 ACINAINNKEFSDGNSKVKLRAR 407
I +N +D V L R
Sbjct: 178 NAIKRLNGMLINDKQVYVGLFIR 200
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F +G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F + A A + + +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETNEAAQQAIGTMNGMLL----NDRKVFVGHFKSQREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ + E ++D +G+++ + + R+ S R +GF++F HE
Sbjct: 184 GAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSR-GFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE S
Sbjct: 243 EAQKAVDHMNGKEVS 257
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDME------------EPADEAETLEDERRELNAI 141
D+ G +G V++ +H+E + A D M AE + +R +
Sbjct: 225 DNSGHSRGFG-FVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQL 283
Query: 142 AKDRKIK-KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+DR+ + + +++ LD + E +R VF G + ++ + +KG+ FV F+
Sbjct: 284 KQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFS 341
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ E A +A+TEM ++ GT P
Sbjct: 342 SPEEATKAVTEMNGCIV-----GTKP 362
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|297800520|ref|XP_002868144.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313980|gb|EFH44403.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
Length = 547
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A +E+VR FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 128 KLFVGSVPRTAIEEEVRPFFEKHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 187
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 188 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGR-- 243
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FA+P R
Sbjct: 244 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFADPKR 300
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 210 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGRVEDVYLMRD-EYRQSRGCGFVKYSSK 268
Query: 203 EHAKRAL 209
E A A+
Sbjct: 269 ETAMAAI 275
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|32482373|gb|AAP84379.1| FCA protein [Triticum aestivum]
Length = 737
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+R +
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 181 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 293
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 262 EPALAAMNSLSGTYI 276
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 122 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRAL 181
Query: 391 NNK 393
+N+
Sbjct: 182 HNQ 184
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|32482118|gb|AAP84411.1| FCA protein, partial [Triticum aestivum]
Length = 736
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L + T +G FVK+A E A+RA+
Sbjct: 121 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRGRKTGEQQGCCFVKYATSEEAERAIRA 180
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
N G D LFV ++ T + I++ +G VE
Sbjct: 181 QHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 238
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 239 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGAYIMRGC-EQPLIVRFADPKR 293
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 203 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 261
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 262 EPALAAMNSLSGAYI 276
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 35/297 (11%)
Query: 119 DDMEEPADEAETLEDERRELNA-----IAKDRKIKKEHEIFIGGLDRDATQEDVRKVFER 173
DD+ P + A + +D R L+A + + +++G LD T+ + ++F
Sbjct: 35 DDIASPTEAAGSADDPSR-LSAGANSGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNN 93
Query: 174 IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA-----KRALTEMKNPVICGKRCGTAPSE 228
IG V +R+ ++ T R+ GYA+V F N +RAL E+ +I GK C S+
Sbjct: 94 IGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQ 153
Query: 229 DNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280
+ +L F+ N+ + +A+ +G ++ + G S+G+ FV
Sbjct: 154 RDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAFG----SILSCKVAVDELGNSKGYGFV 209
Query: 281 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW 340
+ A AA K V GH V+ + + D ++ V++ + P
Sbjct: 210 HYKTSESAEAAIKH-----VYVGH-----HVSKKDRQSKFD-DMKLKFTNVYVKNIDPEI 258
Query: 341 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
E + + K +G+V + L+ + K + +GF+++ HE A + +++ E+ D
Sbjct: 259 SEAEFEELFKKFGNVTSLSLSVD-ENGKSRGFGFVNYENHEDAARAVEELHDTEYKD 314
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 31/274 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD + + F G ++ ++ + N +KGY FV + E A+ A+ +
Sbjct: 166 VFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGN-SKGYGFVHYKTSESAEAAIKHV 224
Query: 213 KNPVICGKRCGTAPSEDN----DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268
K+ + +D ++V NI ++ ++ K +G V +++L D
Sbjct: 225 YVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFG--NVTSLSLSVD- 281
Query: 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
G SRGF FV + H DA A + L + + +R + V A+ E + E+
Sbjct: 282 -ENGKSRGFGFVNYENHEDAARAVEELHDTE----YKDRKLYVCRAQKKHEREEELRKQY 336
Query: 329 KTVFLDGVPPHWKEN-------------QIRDQIKGYGDVI--RIVLARNMSTAKRKDYG 373
+ LD + + N ++R + YG + +I++ N K K +G
Sbjct: 337 EQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDN---GKSKGFG 393
Query: 374 FIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
F+ FS+ + A I +N + S V L R
Sbjct: 394 FVCFSSPDEATKAITEMNQRMVSGKPLYVALAQR 427
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 132 EDERRELNAIAKDRKIKKEHEI--FIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
E+E R+ AK K+ K + I F+ LD D E +R+ F G + ++ +
Sbjct: 329 EEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVD-DNG 387
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
++KG+ FV F++ + A +A+TEM ++ GK A ++ D
Sbjct: 388 KSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDV 430
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + F+ G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G + + +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG--NILSCKV 121
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA---EPLREPD 321
V DI S+GF FV + A A ++K + + ++ F + +RE
Sbjct: 122 VCDING---SKGFGFVHYESDESAQRA---IEKVNGMLMEDKKVFVARFKSRNDRMREFG 175
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
+ H +F+ +P W + + + +G+V+ + + +T K +GFI F H+
Sbjct: 176 -DAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 382 AAVACINAINNKEF 395
A A + ++ KE
Sbjct: 235 QAEAAVEIMHEKEI 248
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/358 (18%), Positives = 148/358 (41%), Gaps = 51/358 (14%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L + FQ+ G C D +A + ++PAD L+
Sbjct: 8 DLHPDITEAMLYDKFQAS----GPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 135 RRE--------LNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
+ + +D +++ + +FI LDR + + F G ++ ++
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVC 123
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDND------------- 231
+ N +KG+ FV + + E A+RA+ ++ ++ K+ A + +
Sbjct: 124 DI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 232 -TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
LFV N+ ++W +A+ + + +G V + ++ D + GLS+ F+ F H A A
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFG--EVVSHKVICD-ETTGLSKCHGFISFKEHDQAEA 238
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV-------------FLDGVP 337
A + + + ++ + + A+ E E+ A + + ++ +
Sbjct: 239 AVEIMHEKEI----EGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLD 294
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ +R+ K +G++ + +++ + K +GF+ FS+ E A + +N + F
Sbjct: 295 DSIDDEGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIF 351
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEPADEAETL------EDERRELNAIAKDRKIKKEH-------E 152
+ + EHD+ E A + M E E + L + R AK KIK+E
Sbjct: 228 ISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN 287
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD E +R+ F++ G + ++ + + R+KG+ FV F++ E A +A+TEM
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEM 346
Query: 213 KNPVICGK 220
+ GK
Sbjct: 347 NGRIFGGK 354
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 27/269 (10%)
Query: 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
+N AK R +++G L D T++ + K F R+G V+ +R+ ++ T R+ GYA+V
Sbjct: 1 MNVAAKYRM----ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYV 56
Query: 198 KFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQ 249
F A++AL M V+ GK S+ + L F+ N+ + +++ +
Sbjct: 57 NFLQLADAQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYE 116
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ----KPDVVFGHP 305
+G + + ++SD + S+G+AFV F A A + + K VF
Sbjct: 117 CFSAFG--KILSSKVMSDDRG---SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGR 171
Query: 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
++ K AE LR E V++ + ++R+ YG ++ + + N S
Sbjct: 172 FKSRKDREAE-LRNKASEF----TNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-S 225
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKE 394
K + +GF+ F +HEAA + +N KE
Sbjct: 226 CGKSRGFGFVSFDSHEAARKAVEEMNGKE 254
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 115/265 (43%), Gaps = 33/265 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTE 211
+FI LD+ + + + F G+++ K S +R +KGYAFV F ++ A RA+ E
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILS---SKVMSDDRGSKGYAFVHFQSQSAADRAIEE 156
Query: 212 MKNPVI--CGKRCGTAPSEDN------------DTLFVGNICNTWTKEAIKQKLKDYGVE 257
M + C G S + +++ N + E +++ YG
Sbjct: 157 MNGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYG-- 214
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV----VF-GHPERTV--K 310
+ ++ ++++ G SRGF FV F H A A + + +V +F G ++ V +
Sbjct: 215 RILSVKVMTN--SCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQ 272
Query: 311 VAFAEPLREPDPEIMAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
+ + E + + +++ + + + ++R + +G + R+ + + +
Sbjct: 273 AELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQE--EGQ 330
Query: 369 RKDYGFIDFSTHEAAVACINAINNK 393
K +G I FS+ E A + +N +
Sbjct: 331 SKGFGLICFSSSEDAARAMTVMNGR 355
>gi|124513886|ref|XP_001350299.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615716|emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 509
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + ++ ++ +R +FE G V EV + ++ TN +K AFVK A+ A A+
Sbjct: 86 KLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADNAIRL 145
Query: 212 MKNPVICGKRCGTAPSE-------------------DNDTLFVGNICNTWTKEAIKQKLK 252
+ N + G+ + D LF+G++ T++ IK+
Sbjct: 146 LNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIKEMFS 205
Query: 253 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 312
YG VE + ++ D GL +G +FV FS A+ A K L + G R V+V
Sbjct: 206 PYGT--VEEVFIMKD-NSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGC-TRPVEVR 261
Query: 313 FAEPLREPDPEIMAHVKTVFLDGVPPH 339
FAEP P+I ++ + PPH
Sbjct: 262 FAEPKSSKQPQIPLTLQPM---QNPPH 285
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 137 ELNAIAKDRKIKK---EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG 193
ELN + + I+ + ++FIG L ++ T+++++++F G V EV + K+ ST KG
Sbjct: 167 ELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKG 226
Query: 194 YAFVKFANKEHAKRALTEM 212
+FVKF+ KE A A+ +
Sbjct: 227 CSFVKFSYKEQALYAIKSL 245
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI + + Q D+ + F GE++ R+ +T RN+G+AFV + + E A A+++M
Sbjct: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430
Query: 213 KNPVICGKRC 222
+ K+
Sbjct: 431 NGFMALNKKL 440
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K +FI LD + + F G V+ ++ + S+ ++KGY FV+F
Sbjct: 113 RDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFD 171
Query: 201 NKEHAKRALTEMKNPVICGK------------RCGTAPSEDNDTLFVGNICNTWTKEAIK 248
N+E A+ A+ + +I K R T S ++V N+ T+T E +K
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLK 231
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ YG + + ++ D+ G SR F FV F A AA +RL + + +R
Sbjct: 232 KLFGPYGT--ITSATVMKDV--NGKSRCFGFVNFQNPDSAAAAVERLNGTTI---NNDRV 284
Query: 309 VKVAFAEPLREPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDV 355
+ V A+ E + E+ A ++ ++L + + + +++D +G +
Sbjct: 285 LYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTI 344
Query: 356 IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ + S + K GF+ FST E A +N +N K
Sbjct: 345 TSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGK 381
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/254 (18%), Positives = 110/254 (43%), Gaps = 16/254 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+++G L+ + +E + +F ++ ++ +R+ ++ + + GYA+V FAN + A A+
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 212 MKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
+ + GK S+ + ++ F+ N+ + +A+ +G +
Sbjct: 96 LNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVA 155
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE 323
L S G S+G+ FV F A A KRL ++ + V + RE
Sbjct: 156 LDSS----GQSKGYGFVQFDNEEAAQNAIKRLN--GMLINDKQVYVGLFIRRQERE-QTN 208
Query: 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
V++ + + + ++ YG + + ++++ K + +GF++F ++A
Sbjct: 209 GSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVN-GKSRCFGFVNFQNPDSA 267
Query: 384 VACINAINNKEFSD 397
A + +N ++
Sbjct: 268 AAAVERLNGTTINN 281
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 207 RALTEMKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
+++ PVI G G P N +L+VG++ +E + V + +I +
Sbjct: 11 QSVAAAATPVIAPGVALGGGPFA-NASLYVGDLEGNVNEEQLYDLFSQ--VAQIASIRVC 67
Query: 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM 325
D Q + S G+A+V F+ DA A + L + G P +++ F++ R+P
Sbjct: 68 RD-QTKRSSLGYAYVNFANAQDASNAMELLNFTPL-NGKP---IRIMFSQ--RDPSIRKS 120
Query: 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385
H VF+ + + D +G V+ +A + S+ + K YGF+ F EAA
Sbjct: 121 GH-GNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQN 178
Query: 386 CINAINNKEFSDGNSKVKLRAR 407
I +N +D V L R
Sbjct: 179 AIKRLNGMLINDKQVYVGLFIR 200
>gi|32482102|gb|AAP84403.1| FCA protein [Triticum aestivum]
Length = 730
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+R +
Sbjct: 114 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRA 173
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 174 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 231
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 232 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 286
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++K
Sbjct: 196 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSK 254
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 255 EPALAAMNSLSGTYI 269
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 115 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIRAL 174
Query: 391 NNK 393
+N+
Sbjct: 175 HNQ 177
>gi|224136798|ref|XP_002322418.1| predicted protein [Populus trichocarpa]
gi|222869414|gb|EEF06545.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382
++ HV TV + G+ W ++++ K YG++I ++L RN AK KD+GFI FS+H++
Sbjct: 350 QLEIHVTTVHVKGLVKSWNVKKLKELCKQYGEIINVLLPRNFG-AKHKDFGFIAFSSHKS 408
Query: 383 AVACINAINNKEFSDGNSKVKLRARLS 409
AVAC+ IN + + ++ K++A L+
Sbjct: 409 AVACVEGINKTQLGE-ETQTKVKADLA 434
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 104 DCVDYGEH-DEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKE-HEIFIGGLDRD 161
DC D E DEE DD+E+ D +T E E L + K R+++ + + GL +
Sbjct: 307 DCTDVQEGCDEEGDIADDVEDNEDSDDTEEVEDPSLTSSGKQRQLEIHVTTVHVKGLVKS 366
Query: 162 ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221
+ ++++ ++ GE+I V L +NF ++K + F+ F++ + A A E N G+
Sbjct: 367 WNVKKLKELCKQYGEIINVLLPRNFGA-KHKDFGFIAFSSHKSA-VACVEGINKTQLGEE 424
Query: 222 CGTAPSED 229
T D
Sbjct: 425 TQTKVKAD 432
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 16/255 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ S+ + +L + N + K +I K NI Q
Sbjct: 73 NFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHV 328
E G S+G+ FV F AA K ++K + + + ++ V V P +E + E+
Sbjct: 133 DENGTSKGYGFVHFETEE---AANKSIEKVNGMLLNGKK-VYVGRFIPRKEREKELGEKA 188
Query: 329 KT---VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAA 383
K V++ E Q+R+ + +G +I + MS K K +GF+ F + EAA
Sbjct: 189 KLFTNVYVKNFGEDLSEEQLRNMFEKFG---KITSYKVMSKDDGKSKGFGFVAFESPEAA 245
Query: 384 VACINAINNKEFSDG 398
++A+N KE +G
Sbjct: 246 ETAVDALNGKELVEG 260
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/362 (19%), Positives = 148/362 (40%), Gaps = 55/362 (15%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L + F S G C D +A + ++PAD L+
Sbjct: 17 DLHSDITEAMLFDKFSSA----GPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 135 RREL--------NAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
+L +D ++K +FI LDR + + F G ++ ++ +
Sbjct: 73 NFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA---PSEDND---------- 231
+ +KGY FV F +E A +++ ++ ++ GK+ P ++ +
Sbjct: 133 D-ENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 232 -TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
++V N ++E ++ + +G + + ++S + +G S+GF FV F A
Sbjct: 192 TNVYVKNFGEDLSEEQLRNMFEKFG--KITSYKVMS--KDDGKSKGFGFVAFESPEAAET 247
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLD------GVPPHWK--- 341
A L ++V G P + V A+ E E+ + + ++ GV + K
Sbjct: 248 AVDALNGKELVEGKP---LYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLD 304
Query: 342 ----ENQIRDQIKGYGDVI--RIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAIN 391
+ ++R + +G + ++++ N + T + K +GF+ FS+ E A + +N
Sbjct: 305 DTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 392 NK 393
+
Sbjct: 365 GR 366
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 127 EAETLEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIGEVIEVRLH-- 183
+AE ++ +R A+ +R + + +++ LD E +RK F G + ++
Sbjct: 271 KAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIE 330
Query: 184 ----KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
++F T R+KG+ FV F++ E A +A+TEM ++ K
Sbjct: 331 ENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 371
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F R G ++ +R+ ++ T R YA+V F + + A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L VGNI ++I K+ NI +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETH---EAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++D +G + + + + S K K +GF+ F HE A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKELN 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLG-------ENFQSELDDYGS 98
Y + ED ++E L+++ K P +V V +E KSK G E+ Q +D+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGG 157
E G + G ++ E + +R+ + +DR + + +++
Sbjct: 254 KELNGKQIYVGRAQKK-------------VERQTELKRKFEQMKQDRITRYQVVNLYVKN 300
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
LD D E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++
Sbjct: 301 LDDDIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 218 CGK 220
K
Sbjct: 359 ATK 361
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD+ + + G ++ ++ + N +KGY FV F E A+RA+ +M
Sbjct: 101 IFVKNLDKSINNKVLYDTASAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG--P 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV---- 309
++ +++D G S+GF FV F H DA A K L + G ++ V
Sbjct: 217 ALSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E +++ D V +++ + + ++R +G + + M
Sbjct: 275 ELKRKF-EQMKQ-DRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVM--MEGG 330
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ E A + +N + + V L R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+ PS +L+VG++ T+ + +K G + +I + D+ S +A+V F
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSRAG--PILSIRVCRDVITRRYS-SYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 HPKDAERALDTMNF-DVIKGKPVRIM-------WSQRDPSLRRSGVGNIFVKNLDKSINN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 113 KVLYDTASAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGMLLND 165
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD ++ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G V + +
Sbjct: 111 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG--NVLSCKV 168
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
+D +G S+G+ FV + A A K L V GH ER K+
Sbjct: 169 ATD--EQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLD--- 223
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
EI A +++ + P + + +G+V V+ + K +GF+
Sbjct: 224 -------EIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTD-EEGNSKGFGFV 275
Query: 376 DFSTHEAAVACINAINNKEFS 396
+F HE A ++ +++ E++
Sbjct: 276 NFEFHEEAQNAVDGLHDTEYN 296
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 37/282 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R+KGY FV + E A+ A+ +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATD-EQGRSKGYGFVHYETAEAAETAIKAV 197
Query: 213 KNPVICGKRCGT----APSEDNDTL----------FVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ + E L +V N+ + E Q + +G
Sbjct: 198 NGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFG--- 254
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ V EG S+GF FV F H +A A L + + R + V+ A+
Sbjct: 255 -NVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTE----YNGRKLFVSRAQKKA 309
Query: 319 EPDPEIMA---HVKT----------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ H K +++ + + ++R + + +G + + R+
Sbjct: 310 EREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRD-E 368
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K +GF+ FS+ + A + +NNK V L R
Sbjct: 369 KGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQR 410
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH--EIFIG 156
+E+ + VD G HD E A + E+E R+ AK K+ K ++I
Sbjct: 280 HEEAQNAVD-GLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIK 338
Query: 157 GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216
LD + E +R FE G + ++ ++ +KG+ FV F++ + A +A+ EM N +
Sbjct: 339 NLDDEIDDERLRAEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSPDEATKAVAEMNNKM 397
Query: 217 ICGK 220
I K
Sbjct: 398 IGAK 401
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 112/269 (41%), Gaps = 39/269 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+ + GL + + ++F +G V+ ++ K+ T + Y F++F + A+ A M
Sbjct: 41 VHVAGLHESVDETLLSRIFSIVGHVVSCKIMKD-KTGTHARYGFIEFIDHTTAEFAKENM 99
Query: 213 KNPVICGKRCGTAPSEDNDT-------LFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265
++ GK + D+ + LFVG + T E + Q +G V
Sbjct: 100 NGRLVYGKELKVNWTHDSQSDAKGSFKLFVGGLHTEVTNEILYQNFAKFG--------RV 151
Query: 266 SDIQ-----HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
SD + G S+G+ FV F DA A + + + RTVKV + ++P
Sbjct: 152 SDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKI----QGRTVKVNWGTATQKP 207
Query: 321 DP-----------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E V++ G+P +E+ +R K +GD I+ + M T
Sbjct: 208 TETVKRGFDEISRETSNTNNNVYVGGIPKETEESTMR---KLFGDFGEIIDLKIMRTDAE 264
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDG 398
K YGF+ F +H+ A I +N + + G
Sbjct: 265 KAYGFVRFVSHDNATKAIMMLNGYQLNGG 293
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 35/225 (15%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRK-IKKEHE 152
D G++ YG +++ +H EFA ++M + + ++N + K +
Sbjct: 73 DKTGTHARYG-FIEFIDHTTAEFAKENMN-----GRLVYGKELKVNWTHDSQSDAKGSFK 126
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+GGL + T E + + F + G V + R+ + + +++GY FV F KE A+ A+ M
Sbjct: 127 LFVGGLHTEVTNEILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMM 186
Query: 213 KNPVICGKRC----GTA------------------PSEDNDTLFVGNICNTWTKEAIKQK 250
I G+ GTA S N+ ++VG I + +++
Sbjct: 187 NGEKIQGRTVKVNWGTATQKPTETVKRGFDEISRETSNTNNNVYVGGIPKETEESTMRKL 246
Query: 251 LKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
D+G E I+L I + + FV F H +A A L
Sbjct: 247 FGDFG----EIIDL--KIMRTDAEKAYGFVRFVSHDNATKAIMML 285
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 9/205 (4%)
Query: 118 DDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEV 177
D EE +ET+ + K ++ +IF+GG+ D T ED+ + F + GEV
Sbjct: 5 DSHQEEQTQNSETVNGGTVSEGGLKDLGKGNEDKKIFVGGIAYDVTNEDLSQYFSQYGEV 64
Query: 178 IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP--SEDNDTLFV 235
+ ++ + +T R++G+AFV+F E A RA + + GK P S +N +FV
Sbjct: 65 AQAQVKYDRNTGRSRGFAFVEFTTGE-ACRAALNAREQSLKGKTVEVKPAKSRENKKVFV 123
Query: 236 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
G + +E ++ + YG VE+I D Q + R FAF++F + AA +
Sbjct: 124 GGLPADHPEEELRAHFEQYGK--VEDIEWPFDKQTK-ARRNFAFIVFE---EEEAAERAS 177
Query: 296 QKPDVVFGHPERTVKVAFAEPLREP 320
P +FG E VK A + R P
Sbjct: 178 ATPKQMFGSRECDVKKAVPQGKRFP 202
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288
++ +FVG I T E + Q YG V + D ++ G SRGFAFV F+
Sbjct: 36 EDKKIFVGGIAYDVTNEDLSQYFSQYGE--VAQAQVKYD-RNTGRSRGFAFVEFTTGEAC 92
Query: 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 348
AA ++ +TV+V P K VF+ G+P E ++R
Sbjct: 93 RAALNAREQS-----LKGKTVEV---------KPAKSRENKKVFVGGLPADHPEEELRAH 138
Query: 349 IKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ YG V I + T R+++ FI F
Sbjct: 139 FEQYGKVEDIEWPFDKQTKARRNFAFIVF 167
>gi|32482149|gb|AAP84420.1| FCA-D1 [Triticum aestivum]
Length = 659
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FV++A E A+RA+
Sbjct: 40 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVEYATSEEAERAIRA 99
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 100 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 157
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG FV FS A+AA L ++ G E+ + V FA+P R
Sbjct: 158 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 212
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 93 LDDYGSYEDYGDC-VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH 151
+ D + E G C V+Y +E E A + + + K+R EH
Sbjct: 71 IRDRKTGEQQGCCFVEYATSEEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEH 130
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+ L++ AT +++ ++F G V +V + K+ +++G FVKF++KE A A+
Sbjct: 131 KLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKD-GMRQSRGCGFVKFSSKEPALAAMNS 189
Query: 212 M 212
+
Sbjct: 190 L 190
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F++++T E A I A+
Sbjct: 41 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVEYATSEEAERAIRAL 100
Query: 391 NNK 393
+N+
Sbjct: 101 HNQ 103
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + + +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL----NDRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E +++ +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 117/255 (45%), Gaps = 23/255 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF---ANKEHAKRAL 209
+++G L++D T+ + ++F +G V +R+ ++ T R+ GYA+V + + + A RA+
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 210 TEMKNPVICGK--------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261
+ V+ GK R +A +F+ N+ T +A+ +G + +
Sbjct: 85 ETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG--KILS 142
Query: 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
+ +D G+S+G+ FV F D AA + +Q E K+ + P ++
Sbjct: 143 CKVATDAN--GVSKGYGFVHFE---DQAAADRAIQ----TVNQKEIEGKIVYVGPFQKRA 193
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
VF+ +P ++++ +G++ V+ ++ K +GFI+F E
Sbjct: 194 DRPQDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKDAE 252
Query: 382 AAVACINAINNKEFS 396
+A C+ +N +E S
Sbjct: 253 SAAKCVEYLNEREMS 267
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 37/265 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G+++ ++ + + +KGY FV F ++ A RA+ +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 213 KNPVICGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I GK P + +FV N+ + + + ++G E +
Sbjct: 175 NQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHG----EITSA 230
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA-EPLREPDPE 323
V +G S+GF F+ F DA +A K ++ E + K +A ++ + E
Sbjct: 231 VVMKDDKGGSKGFGFINFK---DAESAAKCVE----YLNEREMSGKTLYAGRAQKKTERE 283
Query: 324 IMAHVKT---------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
M K +++ + ++ +R+ G + + ++ + K
Sbjct: 284 AMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKD-GSGK 342
Query: 369 RKDYGFIDFSTHEAAVACINAINNK 393
K +GF+ F++H+ A + +N K
Sbjct: 343 SKGFGFVCFTSHDEATRAVTEMNGK 367
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ L + + +R++F G + ++ K+ S ++KG+ FV F + + A RA+TEM
Sbjct: 306 LYVKNLSDEVDDDALRELFANSGTITSCKVMKDGS-GKSKGFGFVCFTSHDEATRAVTEM 364
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 365 NGKMVKGKPLYVALAQRKDV 384
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F + +V+ VR+ ++ +TN + GY +V ++N + A++A+ ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 213 KNPVICGKRC--------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK +A LFV N+ + + + + G + + +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT--IVSCKV 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D H G SRG+ FV F A A ++L G ++ LR+ + E
Sbjct: 166 ATD--HMGQSRGYGFVQFDTEDSAKNAIEKLN------GKVLNDKQIFVGPFLRKEERES 217
Query: 325 MA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A V++ + +++++ YG + V+ R+ K + +GF++F E
Sbjct: 218 AADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPE 276
Query: 382 AAVACINAINNKEFSD 397
A + A+N K+F D
Sbjct: 277 DAARAVEALNGKKFDD 292
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 122/306 (39%), Gaps = 39/306 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD+ + + + F G ++ ++ + +++GY FV+F ++ AK A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 213 KNPVICGKRCGTAP---SEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
V+ K+ P E+ ++ ++V N+ T + +K YG +
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG--SIS 252
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAEPLR 318
+ ++ D +G SR F FV F DA A + L +K D ++ V A+
Sbjct: 253 SAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKKFD------DKEWYVGKAQKKS 304
Query: 319 EPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ + +++ + + ++R+ +G + + R+ S
Sbjct: 305 ERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS 364
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG 425
K GF+ FS A +N +N K V L R K QA M
Sbjct: 365 -GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPA 423
Query: 426 FRIGHG 431
F G G
Sbjct: 424 FIPGVG 429
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTK---EAIKQKLKDYGVEGVENINLVSDIQ 269
VI GK S+ + +L + N + K ++I K+ NI +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+AFV F AA K ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + +++ +G + + + R+ K K +GF+ + HE A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKA 247
Query: 387 INAINNKEFS 396
+ +N KE S
Sbjct: 248 VEEMNGKEIS 257
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKVLYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 33/185 (17%)
Query: 142 AKDRKIKKEHE---------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNK 192
+KD K +K+H+ IF+G L E ++ FE IG VI R+ T R++
Sbjct: 193 SKDEKSQKKHKKDSPTEPATIFVGRLSWSIDDEWLKTEFEHIGGVISARVIYERGTERSR 252
Query: 193 GYAFVKFANKEHAKRALTEMKNPVICG---------------------KRCGTAPSEDND 231
GY +V F +K +A++A+ EM+ I G K+ G PS+ +D
Sbjct: 253 GYGYVDFEDKSYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDRAKKFGDVPSQPSD 312
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
TLF+GN+ ++ I + KDYG + ++ + + + +GF +V ++ +A A
Sbjct: 313 TLFLGNLSFNADRDNIFELFKDYG--SIISVRIPTHPETN-QPKGFGYVQYASIEEAQKA 369
Query: 292 YKRLQ 296
+LQ
Sbjct: 370 LDKLQ 374
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+G L E ++K FE IG V+ R+ T+R++GY +V F +K +A++A+ EM
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEM 223
Query: 213 KNPVICG--------------------KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLK 252
+ I G K+ G PSE ++TLF+GN+ ++AI +
Sbjct: 224 QGKEIDGREINVDMSTSKPAAGNNDRAKKFGDVPSEPSETLFLGNLSFNADRDAISELFS 283
Query: 253 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296
YG + ++ + + + E +GF +V ++ DA A + LQ
Sbjct: 284 KYGE--IISVRIPTHPETE-QPKGFGYVQYTNVEDAKKALEGLQ 324
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+G L +A ++ + ++F + GE+I VR+ + T + KG+ +V++ N E AK+AL +
Sbjct: 264 LFLGNLSFNADRDAISELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGL 323
Query: 213 KNPVI 217
+ I
Sbjct: 324 QGEYI 328
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 117/257 (45%), Gaps = 25/257 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKF---ANKEHAKRAL 209
+++G L++D T+ + ++F +G V +R+ ++ T R+ GYA+V + + + A RA+
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 210 TEMKNPVICGK--------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261
+ V+ GK R +A +F+ N+ T +A+ +G + +
Sbjct: 85 ETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG--KILS 142
Query: 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL--RE 319
+ +D G+S+G+ FV F D AA + +Q + K+ + P R
Sbjct: 143 CKVATD--ANGVSKGYGFVHFE---DQAAADRAIQ----TVNQKKIEGKIVYVAPFQKRA 193
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P VF+ +P ++++ +G++ V+ ++ K +GFI+F
Sbjct: 194 DRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKD 252
Query: 380 HEAAVACINAINNKEFS 396
E+A C+ +N +E S
Sbjct: 253 AESAAKCVEYLNEREMS 269
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 120/256 (46%), Gaps = 28/256 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + ++ + ++F ++G+V+ +R+ ++ T R+ GYA+V + + + A RAL +
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 213 KNPVICG--------------KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
V+ G ++ GTA +F+ N+ T +A+ +G G
Sbjct: 90 NFSVLNGNPIRIMFSHRDPSIRKSGTA------NIFIKNLDKTIDNKALHDTFSAFG--G 141
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + D G S+G+ FV F A+ A ++K + + + ++ F
Sbjct: 142 ILSCKVAVD--GSGQSKGYGFVQFEQEESALTA---IEKVNGMLLNDKQVFVGPFVRRQE 196
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
++ V++ + + E+ +++ YG + V+ R+ S K K +GF++F
Sbjct: 197 RDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRD-SDGKSKCFGFVNFE 255
Query: 379 THEAAVACINAINNKE 394
+ A + A+N K+
Sbjct: 256 HPDNAAKAVEALNGKK 271
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 119/294 (40%), Gaps = 41/294 (13%)
Query: 143 KDRKIKKE--HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D I+K IFI LD+ + + F G ++ ++ + S ++KGY FV+F
Sbjct: 106 RDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGS-GQSKGYGFVQFE 164
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP------------SEDNDTLFVGNICNTWTKEAIK 248
+E A A+ ++ ++ K+ P + ++V N+ T++ +K
Sbjct: 165 QEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTEDDLK 224
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPE 306
YG + + ++ D +G S+ F FV F +A A + L +K D E
Sbjct: 225 NVFGAYGT--ISSAVVMRD--SDGKSKCFGFVNFEHPDNAAKAVEALNGKKRD------E 274
Query: 307 RTVKVAFAEPLREPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYG 353
+ V A+ E + E+ A + ++L + + ++R+ YG
Sbjct: 275 KEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYG 334
Query: 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ + R+ + + GF+ FS+ E A + +N K V L R
Sbjct: 335 TITSCKVMRD-PQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQR 387
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + +VF +G V +R+ ++ T R+ GYA+V F N A+RAL +
Sbjct: 36 LYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTL 95
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I GK+C S + TL FV N+ T +A+ +G + + +
Sbjct: 96 NYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFG--NILSCKV 153
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D +G SRG+ FV F A A +L ++ G K + P ++
Sbjct: 154 ATD--DDGKSRGYGFVHFENDESAHKAITKLN--GMMIGE-----KAVYVGPFQKHAERA 204
Query: 325 MAH------VKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
H V++ +P W E ++ + +G + + + + K + + F+++
Sbjct: 205 EQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQ---TDRKGRRFAFVNY 261
Query: 378 STHEAAVACINAINNKEF 395
++A + A+N K+
Sbjct: 262 EDFDSAAKAVEAMNGKDM 279
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ L D E +R++FE+ GE+ ++ + +T ++G+ FV FAN+ ++A+ M
Sbjct: 341 LYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAM 400
Query: 213 KNPVICGKRCGTAPSEDNDT 232
+ GK A +E D
Sbjct: 401 HLKLYGGKPLFVAVAEKRDA 420
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F + +V+ VR+ ++ +TN + GY +V ++N + A++A+ ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 213 KNPVICGKRC--------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK +A LFV N+ + + + + G + + +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT--IVSCKV 165
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D H G SRG+ FV F A A ++L G ++ LR+ + E
Sbjct: 166 ATD--HMGQSRGYGFVQFDTEDSAKNAIEKLN------GKVLNDKQIFVGPFLRKEERES 217
Query: 325 MA---HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A V++ + +++++ YG + V+ R+ K + +GF++F E
Sbjct: 218 AADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPE 276
Query: 382 AAVACINAINNKEFSD 397
A + A+N K+F D
Sbjct: 277 DAARAVEALNGKKFDD 292
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 122/306 (39%), Gaps = 39/306 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD+ + + + F G ++ ++ + +++GY FV+F ++ AK A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 213 KNPVICGKRCGTAP---SEDNDT---------LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
V+ K+ P E+ ++ ++V N+ T + +K YG +
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG--SIS 252
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL--QKPDVVFGHPERTVKVAFAEPLR 318
+ ++ D +G SR F FV F DA A + L +K D ++ V A+
Sbjct: 253 SAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKKFD------DKEWYVGKAQKKS 304
Query: 319 EPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E + E+ + +++ + + ++R+ +G + + R+ S
Sbjct: 305 ERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS 364
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGG 425
K GF+ FS A +N +N K V L R K QA M
Sbjct: 365 -GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPA 423
Query: 426 FRIGHG 431
F G G
Sbjct: 424 FIPGVG 429
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 115/258 (44%), Gaps = 26/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G V + +
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG--NVLSCKV 167
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ------KPDVVFGHPERTVKVAFAEPLR 318
+D G S+G+ FV + A A K + K V H R + + E
Sbjct: 168 ATD--EHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIE--- 222
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
E+ A V++ + + + R + +G+V V+ R+ + K +GF++F
Sbjct: 223 ----EMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRD-EEGRSKGFGFVNFE 277
Query: 379 THEAAVACINAINNKEFS 396
HE A + ++++ E +
Sbjct: 278 KHEEAQKGVESLHDFELN 295
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 107/285 (37%), Gaps = 43/285 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G V+ ++ + R+KGY FV + E A A+ +
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAADTAIKAV 196
Query: 213 KNPVICGKRCGTAP--------------SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ K+ P ++V NI T E +Q + +G
Sbjct: 197 NGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFG--- 253
Query: 259 VENINLVSDIQH---EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315
N+ S + EG S+GF FV F H +A + L F + + V A+
Sbjct: 254 ----NVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHD----FELNGKKLFVTRAQ 305
Query: 316 PLREPDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR 362
E + E+ + +++ + + ++R + + +G + + R
Sbjct: 306 KKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMR 365
Query: 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ + A + +NNK V L R
Sbjct: 366 D-EKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 132 EDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN 189
E+E R+ AK+ K+ K ++I L+ + E +R+ FE G + ++ ++
Sbjct: 311 EEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRD-EKG 369
Query: 190 RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
+KG+ FV F++ + A +A+ EM N +I K
Sbjct: 370 SSKGFGFVCFSSPDEATKAVAEMNNKMIGTK 400
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 113/256 (44%), Gaps = 24/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD ++ + +F IG V +R+ ++ T + GYA+V F + E K A+ ++
Sbjct: 45 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 104
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C S+ + ++ F+ N+ + + + +G + + +
Sbjct: 105 NYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG--NILSCKI 162
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--- 321
+D G S+GF FV F A A D + G +V A + + D
Sbjct: 163 AND--ETGKSKGFGFVHFENEEAAREAI------DAINGMLLNGQEVYVAPHVSKKDRQS 214
Query: 322 --PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
E A+ V++ + E + K YG + + L ++ + K + +GF+DF
Sbjct: 215 KLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKD-AEGKSRGFGFVDFEN 273
Query: 380 HEAAVACINAINNKEF 395
HE AV + A+N+ E+
Sbjct: 274 HEDAVKAVEALNDTEY 289
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 41/270 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L D + + + F G ++ ++ N T ++KG+ FV F N+E A+ A+ +
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIA-NDETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 213 KNPVICGKRCGTAP-------------SEDNDT-LFVGNICNTWTKEAIKQKLKDYGVEG 258
++ G+ AP + N T ++V N+ T+E + K YG
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGT-- 249
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ ++ L D EG SRGF FV F H DA+ A + L + + +T+ V A+
Sbjct: 250 ITSVALEKD--AEGKSRGFGFVDFENHEDAVKAVEALNDTE----YKGQTLYVGRAQKKY 303
Query: 319 EPDPEIMAHVKT-------------VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E E+ + +F+ + + +++++ +G I AR M
Sbjct: 304 ERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGT---ITSARVMR 360
Query: 366 T--AKRKDYGFIDFSTHEAAVACINAINNK 393
T K K +GF+ FST E A I N +
Sbjct: 361 TENGKSKGFGFVCFSTPEEATRAITEKNQQ 390
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 129 ETLEDERRELNAIAKDRKIKKEHEI--FIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF 186
E L++ +++ A +K K+ K I FI LD E +++ F G + R+ +
Sbjct: 304 ERLQELKKQYQA-SKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT- 361
Query: 187 STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
++KG+ FV F+ E A RA+TE ++ GK A ++ D
Sbjct: 362 ENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDV 407
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|237838769|ref|XP_002368682.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211966346|gb|EEB01542.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|221481488|gb|EEE19874.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
gi|221505448|gb|EEE31093.1| hypothetical protein TGVEG_080800 [Toxoplasma gondii VEG]
Length = 492
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 25/270 (9%)
Query: 31 LVEVAKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLKSKLLGENFQ 90
+ E A ++E F K E EN D E T V+ L + + G +
Sbjct: 1 MAETAPEQQVVEQSFAEKPEAASP-----AENFADAIEEPTTSVEAP-PLAAHVAGVEGE 54
Query: 91 SELDDYGSYEDYG-DCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKK 149
D G E+ G + V+ E EE +D E + ET ED N K
Sbjct: 55 ---DARGCEEENGREDVEKPEESNEE-KGEDAERTEENEETKEDG---TNGAGKPEDPDA 107
Query: 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209
+ F+GG+ AT+ +R FER G+V V L + T RN+G+ FV ++E AK A+
Sbjct: 108 ALKFFVGGIIPQATELQIRSYFERFGKVKAVELKMDKMTGRNRGFCFVTMGSEE-AKEAI 166
Query: 210 TEMKNPVICGKRCGTAPSEDNDT------LFVGNICNTWTKEAIKQKLKDYGVEGVENIN 263
++ I GK+ P D+ +FVG + + ++ +++ +G V+ ++
Sbjct: 167 FNAQH-AIGGKKVEVRPLHDDGNVSLKRKIFVGGVNPSLSESDVEKCFSKFGT--VDKVS 223
Query: 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293
++ D G SRGF FV+F+ A K
Sbjct: 224 IIRDAAT-GKSRGFGFVVFASEESAKEVLK 252
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 25/270 (9%)
Query: 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFV 197
+NA AK R +++G L +AT++ + + F G V+ +R+ ++ +T + GYA+V
Sbjct: 1 MNAAAKYRL----ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYV 56
Query: 198 KFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQ 249
F A+RAL M VI G+ S+ + L FV N+ + + + +
Sbjct: 57 NFLQLADAQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYE 116
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
+G + + ++SD Q S+G+AFV F A A +++ + +R V
Sbjct: 117 HFSGFG--KILSSKVMSDDQG---SKGYAFVHFQSQSAANCAIEQMNGKVI----NDRPV 167
Query: 310 KVAFAEPLREPDPEIMAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366
VA +P ++ + E+ + V++ + +++ YG + + + + S+
Sbjct: 168 FVAPFKPRKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTD-SS 226
Query: 367 AKRKDYGFIDFSTHEAAVACINAINNKEFS 396
K K +GF+ F +HEAA + +N K+ +
Sbjct: 227 GKSKGFGFVSFESHEAAKRAVEEMNGKDMN 256
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I D E ++ VF R G+ + V++ + S+ ++KG+ FV F + E AKRA+ EM
Sbjct: 192 VYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTD-SSGKSKGFGFVSFESHEAAKRAVEEM 250
Query: 213 KNPVICGKRCGTAPSE------------------------DNDTLFVGNICNTWTKEAIK 248
+ G+ ++ L+V N+ +T E ++
Sbjct: 251 NGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLR 310
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
++ +G +I V ++ EG SRGF + FS +A A + V G +
Sbjct: 311 KEFSSFG-----SITRVKVMKEEGYSRGFGLICFSSPEEAAKALTEMNGR--VLGSKALS 363
Query: 309 VKVA 312
+ +A
Sbjct: 364 IALA 367
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++++ LD E +RK F G + V++ K +R G+ + F++ E A +ALTE
Sbjct: 294 KLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMKEEGYSR--GFGLICFSSPEEAAKALTE 351
Query: 212 MKNPVICGKRCGTAPSE 228
M V+ K A ++
Sbjct: 352 MNGRVLGSKALSIALAQ 368
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRA 208
++ +++G L D T++ + K F +G V+ +R+ ++ T R+ GYA+V F A++A
Sbjct: 8 RQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKA 67
Query: 209 LTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVE 260
L M +I GK S+ + L F+ N+ + + + + +G +
Sbjct: 68 LDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG--KIL 125
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
+ ++SD Q SRG+AFV F + A A + + G + ++
Sbjct: 126 SSKVMSDDQG---SRGYAFVHFQNQIAADRAIEEMN------GALLKDCRLFVGRFKNRK 176
Query: 321 DPEIMAHVKT-----VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
D E K V++ + ++++ YG + + + R+ S+ K K +GF+
Sbjct: 177 DREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKGFGFV 235
Query: 376 DFSTHEAAVACINAINNKEFS 396
F +HEAA + +N K+ +
Sbjct: 236 SFDSHEAAKKAVEEMNGKDIN 256
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I D E +++VF + G+ + V++ ++ S+ ++KG+ FV F + E AK+A+ EM
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
I G+ ++ L++ N+ T E ++
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLR 310
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ +G +I+ V +Q EG S+GF + FS +A A +
Sbjct: 311 REFSSFG-----SISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEM 352
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
+++I LD E +R+ F G + V++ + R+KG+ + F++ E A +A+TE
Sbjct: 294 KLYIKNLDETIDDEKLRREFSSFGSISRVKVMQE--EGRSKGFGLICFSSPEEATKAMTE 351
Query: 212 MKNPVICGKRCGTAPSE 228
M ++ K A ++
Sbjct: 352 MNGRILGSKPLNIALAQ 368
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 23/280 (8%)
Query: 170 VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPSE 228
+ E++G ++E+RL +FS + +GYAF + A+RA + + + + G R G S
Sbjct: 3 LLEKVGRLLELRLMLDFSGS-TRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSM 61
Query: 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288
DN LF G + + TKE +L ++G+ ++ L L+RGF FV F H A
Sbjct: 62 DNCRLFFGGVPKSKTKEEFLSELTKI-LDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAA 120
Query: 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQ 348
A ++L V+ E V A EP D +IM V +F+ + + ++R+
Sbjct: 121 AMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREV 180
Query: 349 IKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI------NAINNKEFSD----- 397
+ +V + K + FI + AA A + N++ KE +
Sbjct: 181 FHRHTNV------PILKLKKINHFAFIHYENRGAAQAVMDIMQKSNSVVEKEGWEIRWAK 234
Query: 398 --GNSKVKLRARLSNPMPKTQAVKGGMSGGF-RIGHGSSR 434
G SK R R V+ GG+ + HG R
Sbjct: 235 PIGASKFIERQRYIREAVANSGVRTASKGGYPKQAHGKRR 274
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 17/251 (6%)
Query: 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+++G L D + + + F + G V+ +R+ ++ T R+ GYA+V F A+RAL
Sbjct: 15 QSLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALD 74
Query: 211 EMKNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267
M I G+ C S+ + +L VGNI ++I K NI L
Sbjct: 75 TMNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNI-LSCK 133
Query: 268 IQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE-- 323
+ +G S+GF FV F A A ++ V G +KV + + D
Sbjct: 134 VATDGNRHSKGFGFVHFDEQEAADLAIEK------VNGKLLNDMKVYVGKFIPRKDRSHT 187
Query: 324 --IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
H VF+ + + + D + YG ++ V+ ++ K +GF+ F +HE
Sbjct: 188 NGFNQHYTNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKD-GEGLSKGFGFVSFESHE 246
Query: 382 AAVACINAINN 392
AA A + A++N
Sbjct: 247 AASAAVQAVHN 257
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI D T + VFE+ G ++ + K+ +KG+ FV F + E A A+ +
Sbjct: 197 VFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKD-GEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 213 KNPVICGKR--CGTAPSEDNDT----------------------LFVGNICNTWTKEAIK 248
N ++ G++ CG A ++ + L++ N+ +T +E +K
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ +G + + +++D G S+GF FV FS +A A + VV +
Sbjct: 316 SEFSKFG--SITSAKIMTD--EFGHSKGFGFVCFSSPEEATKAVTEMNGRIVV----SKP 367
Query: 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVP 337
+ VA A+ E + A G+P
Sbjct: 368 LYVALAQRKEERQAHLAAQRMQRIARGIP 396
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 40/269 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + +KG+ FV F +E A A+ ++
Sbjct: 105 IFIKNLDKSIDHKALYDTFSAFGNILSCKVATD-GNRHSKGFGFVHFDEQEAADLAIEKV 163
Query: 213 KNPVICGKRCGTA---PSEDND----------TLFVGNICNTWTKEAIKQKLKDYGVEGV 259
++ + P +D +F+ N +T + + YG
Sbjct: 164 NGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYTNVFIKNFGEDFTDTMLYDVFEKYG---- 219
Query: 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319
++ V EGLS+GF FV F H A AA + + +V G R V A+ E
Sbjct: 220 SIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHN-SIVNG---RQVYCGRAQKKNE 275
Query: 320 PDPEIMAHVK-------------TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366
E+M + +++ + E +++ + +G I A+ M+
Sbjct: 276 RSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLKSEFSKFGS---ITSAKIMTD 332
Query: 367 --AKRKDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 EFGHSKGFGFVCFSSPEEATKAVTEMNGR 361
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+GGL + + ++K FE+ GEVI R+ T R+KG+ +V FA+ E A++A+ M
Sbjct: 403 LFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAM 462
Query: 213 KNPVICGKRCG---TAP-----------------SEDNDTLFVGNICNTWTKEAIKQKLK 252
I G+ +AP S TLF+GN+ + T++++ +
Sbjct: 463 AGTEIDGRTINVDFSAPKPERPPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEAFS 522
Query: 253 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+YG + ++ L +D + E + +GF +V F+ A AA
Sbjct: 523 EYG--DINSVRLPTDPETERI-KGFGYVEFATQEAATAA 558
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286
S D LFVG + + +K++ + +G V + ++++ E S+GF +V F+
Sbjct: 397 SGDIKNLFVGGLSWNVDDDWLKKEFEKFG--EVISARVITERGTE-RSKGFGYVDFASPE 453
Query: 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---------EIMAHVKTVFLDGVP 337
DA A + + ++ RT+ V F+ P E P E+ A T+F+ +P
Sbjct: 454 DARKAVEAMAGTEID----GRTINVDFSAPKPERPPQEKRSFGQEELSAPTTTLFIGNLP 509
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388
++ + + YGD+ + L + T + K +G+++F+T EAA A +N
Sbjct: 510 FSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVN 560
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 95 DYGSYEDYGDCVDY-------GEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKI 147
D+ S ED V+ G +F+ E P E + E EL+A
Sbjct: 448 DFASPEDARKAVEAMAGTEIDGRTINVDFSAPKPERPPQEKRSFGQE--ELSA------- 498
Query: 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207
+FIG L ATQ+ V + F G++ VRL + T R KG+ +V+FA +E A
Sbjct: 499 -PTTTLFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATA 557
Query: 208 AL 209
A+
Sbjct: 558 AV 559
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 21/253 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + ++F IG ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ S + L F+ N+ N+ +A+ +G +I
Sbjct: 136 NFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-----SILS 190
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ +E SRGF FV F H A A + + +R V V + ++ + E+
Sbjct: 191 SKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAEL 246
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A V++ + E ++D +G + + + R+ S + + +GF++F HE
Sbjct: 247 GARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRGFGFVNFEKHE 305
Query: 382 AAVACINAINNKE 394
A ++ +N KE
Sbjct: 306 EAQKAVDHMNGKE 318
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL----EDERRELNAIAKDR--KI 147
D G +G V++ +H+E + A D M + L +R E + K R ++
Sbjct: 288 DSNGQSRGFG-FVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQV 346
Query: 148 KKEHE-------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K+E + +++ LD E +++VF G + ++ ++ +KG+ FV F+
Sbjct: 347 KQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTE--SSHSKGFGFVCFS 404
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ E A +A+TEM G+ GT P
Sbjct: 405 SPEEATKAVTEMN-----GRIVGTKP 425
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 73/366 (19%), Positives = 134/366 (36%), Gaps = 73/366 (19%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDE 134
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 80 DLHPDVTEAMLYEMF----SPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 135 RRELNAIAKDRKIKKEHE-----------IFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
E+ + +I H IFI L+ + + F G ++ ++
Sbjct: 136 NFEMIK-GQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 194
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWT 243
N +R G+ FV F E A++A+ M ++ ++ +FVG+ +
Sbjct: 195 YNEHGSR--GFGFVHFETHEAAQKAINTMNGMLL-----------NDRKVFVGHFKSRQK 241
Query: 244 KEAIKQKLKDYGVEGVENINLVSDIQHEGL----------------------SRGFAFVM 281
+EA + + G V NL D+ +GL SRGF FV
Sbjct: 242 REA-ELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVN 300
Query: 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTV---------- 331
F H +A A + +V + + V A+ E E+ + V
Sbjct: 301 FEKHEEAQKAVDHMNGKEV----RGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQG 356
Query: 332 ---FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTHEAAVACI 387
++ + + ++++ YG I A+ M+ ++ K +GF+ FS+ E A +
Sbjct: 357 VNLYVKNLDDSINDERLKEVFSAYG---VITSAKVMTESSHSKGFGFVCFSSPEEATKAV 413
Query: 388 NAINNK 393
+N +
Sbjct: 414 TEMNGR 419
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ L D ++ ++ +F + G+++ V++ ++ ++ ++ + FV F E A++A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 213 KNPVICGK-----RCGTAPSEDNDT-------------------LFVGNICNTWTKEAIK 248
+ G+ R N+ L+V N+ ++ + ++
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
++ YGV I + G S+GF FV FS +A A +
Sbjct: 312 KEFSPYGV-----ITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM 353
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 25/252 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + + +F ++ V +R+ ++ T+R+ GYA+V FAN E A RA+ +
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 105
Query: 213 KNP--------VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ R + +F+ N+ + +A+ + +G + + +
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT--ILSCKV 163
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLRE 319
D+ G S+G+ FV F A AA + L V GH R A +E
Sbjct: 164 AMDV--VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV 221
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P V++ +P +++++ YGD+ V+ ++ S R +GF++F +
Sbjct: 222 PS------FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR-SFGFVNFVS 274
Query: 380 HEAAVACINAIN 391
EAA + +N
Sbjct: 275 PEAAAVAVEKMN 286
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 41/277 (14%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
++ + +FI LD + + + F G ++ ++ + R+KGY FV+F +E A
Sbjct: 127 RLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETA 185
Query: 206 KRALTEMKNPVICGKRC----------------GTAPSEDNDTLFVGNICNTWTKEAIKQ 249
+ A+ ++ ++ K+ G PS N ++V N+ T + +K+
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN--VYVKNLPKEITDDELKK 243
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
YG + + ++ D G SR F FV F A A +++ + G E +
Sbjct: 244 TFGKYG--DISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKMN--GISLG--EDVL 295
Query: 310 KVAFAEPLREPDPEI-------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
V A+ + + E+ ++L + + ++++ YG+V
Sbjct: 296 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 355
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ N S + +GF+ +S E A+ + +N K
Sbjct: 356 SCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGK 391
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
RR+ A ++ + +++ L ++ T ++++K F + G++ + K+ S N ++ +
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSF 267
Query: 195 AFVKFANKEHAKRALTEMKNPVICGK-------------------------RCGTAPSED 229
FV F + E A A+ +M N + G+ R
Sbjct: 268 GFVNFVSPEAAAVAVEKM-NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQ 326
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
L++ N+ ++ E +K+ +YG V + ++ + Q GLSRGF FV +S +A+
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYG--NVTSCKVMMNSQ--GLSRGFGFVAYSNPEEAL 382
Query: 290 AAYKRL 295
A K +
Sbjct: 383 LAMKEM 388
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
N +L+VG++ + + + V V N+ + D+ H L G+A+V F+ DA
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQ--VAPVHNLRVCRDLTHRSL--GYAYVNFANPEDAS 99
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 349
A + L + +R +++ + R+P + VF+ + + +
Sbjct: 100 RAMESLNYAPIR----DRPIRIMLSN--RDPSTRLSGK-GNVFIKNLDASIDNKALYETF 152
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G ++ +A ++ + K YGF+ F E A A I+ +N +D
Sbjct: 153 SSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLND 199
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 26/257 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F A+RAL +
Sbjct: 30 LYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALETL 89
Query: 213 KNPVICGKRCGTAPSEDNDTLFVGNICNTWTKE---AIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + +L GN N + K +I K NI L I
Sbjct: 90 NYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNI-LSCKIA 148
Query: 270 H--EGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAEPLR 318
H +G S+G+ FV + A +A K L V GH ER K+
Sbjct: 149 HDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLG------ 202
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378
E +++ +P + ++ YG + V+ R+ K +GF++F
Sbjct: 203 ----ESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRD-DDGTSKGFGFVNFE 257
Query: 379 THEAAVACINAINNKEF 395
H+ A ++ ++ K+F
Sbjct: 258 KHQDAQNAVDDLHKKDF 274
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 36/268 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + N +KGY FV + E A+ A+ +
Sbjct: 118 IFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGN-SKGYGFVHYETLEAAESAIKSV 176
Query: 213 K------NPVICGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
V G E ++V NI T E + Q YG
Sbjct: 177 NGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGT-- 234
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ + + D +G S+GF FV F H DA A L K D + + V+ A+
Sbjct: 235 ITSCVITRD--DDGTSKGFGFVNFEKHQDAQNAVDDLHKKD----FRGQDLYVSRAQKKN 288
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMS 365
E + E+ + L+ + + N ++RD+ YG + + R+
Sbjct: 289 EREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEK 348
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNK 393
T + +GF+ F++ E A + +N +
Sbjct: 349 TNISRGFGFVCFTSPEDATRAVTEMNGR 376
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 72 VPVDKEEDLKSKLLGE--NFQSEL---DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP-- 124
+P D ++ S+L G+ S + DD G+ + +G V++ +H + + A DD+ +
Sbjct: 216 IPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFG-FVNFEKHQDAQNAVDDLHKKDF 274
Query: 125 ---------ADEAETLEDERRELNAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFER 173
A + E+E R AK K+ K +++ LD D + +R F
Sbjct: 275 RGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSV 334
Query: 174 IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
G + ++ ++ TN ++G+ FV F + E A RA+TEM +I K
Sbjct: 335 YGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSK 381
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 11/250 (4%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTLF---VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
VI G+ S+ + +L VGNI ++I K NI +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
E S+G+ FV F H AA + ++K + + + +R V V + +E + E+ A K
Sbjct: 133 DENGSKGYGFVHFETHE---AAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAEMGARAK 188
Query: 330 ---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386
V++ + ++++ YG + I + + + K K +GF+ F HE A
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 387 INAINNKEFS 396
++ +N KE +
Sbjct: 248 VDEMNGKEMN 257
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+APS +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRDMMTRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 QPADAERALDTMN-FDVIKGRPVRIM-------WSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F THEAA I +N +D
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETHEAAERAIEKMNGMLLND 165
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE +
Sbjct: 243 DANKAVEEMNGKEIT 257
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE +
Sbjct: 243 DANKAVEEMNGKEIT 257
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|32482072|gb|AAP84392.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R A ++DVR +FE G+V+EV L ++ T +G FVK+A E A+RA+
Sbjct: 120 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 179
Query: 212 MKNPVICGKRCGTAPSEDND-----------TLFVGNICNTWTKEAIKQKLKDYGVEGVE 260
+ N G D LFV ++ T + I++ +G VE
Sbjct: 180 LHNQCTIPGAMGPVQVRYVDGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFG--HVE 237
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
++ ++ D + SRG V FS A+AA L ++ G E+ + V FA+P R
Sbjct: 238 DVYIMRDGMRQ--SRGCGLVKFSSKEPALAAMNSLSGTYIMRGC-EQPLIVRFADPKR 292
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
K+R EH++F+ L++ AT +++ ++F G V +V + ++ +++G VKF++K
Sbjct: 202 KERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMRD-GMRQSRGCGLVKFSSK 260
Query: 203 EHAKRALTEMKNPVI 217
E A A+ + I
Sbjct: 261 EPALAAMNSLSGTYI 275
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E+ +R + +GDV+ + L R+ T +++ F+ ++T E A I A+
Sbjct: 121 LFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRAL 180
Query: 391 NNK 393
+N+
Sbjct: 181 HNQ 183
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ S K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE +
Sbjct: 243 DANKAVEEMNGKEIT 257
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E +K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD----VVF-GHPERTV--KV 311
++ ++ D G S+GF FV + H DA A + + + V+F G ++ V +
Sbjct: 217 TLSVKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 188 TNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEA 246
+ +N+GYAF+ F KE A+ A+ + I GK G S N+ LFVG+I TKE
Sbjct: 6 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 65
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHP 305
I ++ EG+ ++ L + +RGF F+ + H A A +RL V V+G+
Sbjct: 66 ILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN- 123
Query: 306 ERTVKVAFAEPLREPDPEIMA 326
V V +A+P+ EPDPE+MA
Sbjct: 124 --VVTVEWADPVEEPDPEVMA 142
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 25/252 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + + +F ++ V +R+ ++ T+R+ GYA+V FAN E A RA+ +
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 105
Query: 213 KNP--------VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ R + +F+ N+ + +A+ + +G + + +
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT--ILSCKV 163
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLRE 319
D+ G S+G+ FV F A AA + L V GH R A +E
Sbjct: 164 AMDV--VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV 221
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P V++ +P +++++ YGD+ V+ ++ S R +GF++F +
Sbjct: 222 PS------FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR-SFGFVNFVS 274
Query: 380 HEAAVACINAIN 391
EAA + +N
Sbjct: 275 PEAAAVAVEKMN 286
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 41/277 (14%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
++ + +FI LD + + + F G ++ ++ + R+KGY FV+F +E A
Sbjct: 127 RLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETA 185
Query: 206 KRALTEMKNPVICGKRC----------------GTAPSEDNDTLFVGNICNTWTKEAIKQ 249
+ A+ ++ ++ K+ G PS N ++V N+ T + +K+
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN--VYVKNLPKEITDDELKK 243
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
YG + + ++ D G SR F FV F A A +++ + G E +
Sbjct: 244 TFGKYG--DISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKMN--GISLG--EDVL 295
Query: 310 KVAFAEPLREPDPEI-------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
V A+ + + E+ ++L + + ++++ YG+V
Sbjct: 296 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 355
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ N S + +GF+ +S E A+ + +N K
Sbjct: 356 SCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGK 391
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
RR+ A ++ + +++ L ++ T ++++K F + G++ + K+ S N ++ +
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSF 267
Query: 195 AFVKFANKEHAKRALTEMKNPVICGK-------------------------RCGTAPSED 229
FV F + E A A+ +M N + G+ R
Sbjct: 268 GFVNFVSPEAAAVAVEKM-NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQ 326
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
L++ N+ ++ E +K+ +YG V + ++ + Q GLSRGF FV +S +A+
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYG--NVTSCKVMMNSQ--GLSRGFGFVAYSNPEEAL 382
Query: 290 AAYKRL 295
A K +
Sbjct: 383 LAMKEM 388
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
N +L+VG++ + + + V V N+ + D+ H L G+A+V F+ DA
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQ--VAPVHNLRVCRDLTHRSL--GYAYVNFANPEDAS 99
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 349
A + L + +R +++ + R+P + VF+ + + +
Sbjct: 100 RAMESLNYAPIR----DRPIRIMLSN--RDPSTRLSGK-GNVFIKNLDASIDNKALYETF 152
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G ++ +A ++ + K YGF+ F E A A I+ +N +D
Sbjct: 153 SSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLND 199
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 119/257 (46%), Gaps = 25/257 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI G+ S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+ FV F AA + ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYGFVHFETQ---EAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS--TAKRKDYGFIDFST 379
A + V++ E ++RD YG+ + I R M+ + K + +GF+ F
Sbjct: 184 GARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSI---RVMTDDSGKSRGFGFVSFER 240
Query: 380 HEAAVACINAINNKEFS 396
HE A ++ +N KE +
Sbjct: 241 HEDAQKAVDEMNGKEMN 257
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/370 (20%), Positives = 144/370 (38%), Gaps = 53/370 (14%)
Query: 75 DKEEDLKSKLLGENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLED- 133
D D+ +L E F G+ C D +A + ++PAD L+
Sbjct: 17 DLHTDVTEAMLYEKF----SPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 134 -----ERRELNAI--AKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK 184
+ R + + +D ++K IFI LD+ + + F G ++ ++
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 185 NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT--------------APSEDN 230
+ N +KGY FV F +E A+RA+ +M ++ ++ A + +
Sbjct: 133 D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
+++ N + +E ++ YG +I +++D G SRGF FV F H DA
Sbjct: 191 TNVYIKNFGDDMDEEKLRDVFNKYG--NAMSIRVMTD--DSGKSRGFGFVSFERHEDAQK 246
Query: 291 AY-----KRLQKPDVVFGHPERTV--KVAFAEPLREPDPEIMAHVKTVFL------DGVP 337
A K + + G ++ V + + + M + V L DG+
Sbjct: 247 AVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGI- 305
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ ++R + +G + + + + K +GF+ FS+ E A + +N + +
Sbjct: 306 ---DDERLRKEFSPFGTITSAKVM--LEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 398 GNSKVKLRAR 407
V L R
Sbjct: 361 KPLYVALAQR 370
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+A S +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAASYPMASLYVGDLHTDVTEAMLYEKFSPAG--AILSIRVCRDMITRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 QPADAERALDTMNF-DVIKGRPVRIM-------WSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F T EAA I +N +D
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETQEAAERAIEKMNGMLLND 165
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 119/256 (46%), Gaps = 22/256 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L + VF ++G V+ VR+ ++ ++ ++ GYA+V + N+ A RAL +
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 213 KNPVICGK--------RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I GK R ++ +F+ N+ + +A+ +G + + +
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG--NILSCKI 154
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPE- 323
+D G SRG+ FV F A +A +L G KV +R+ D E
Sbjct: 155 ATD--PSGESRGYGFVQFEKDESAQSAIDKLN------GMLINDKKVFVGPFVRKQDREN 206
Query: 324 IMAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
+ +++K V++ + ++++++ YG + V+ R+ S K + +GF++F +
Sbjct: 207 VSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRD-SDGKSRCFGFVNFENAD 265
Query: 382 AAVACINAINNKEFSD 397
AA + +N K F+D
Sbjct: 266 AAAQAVQELNGKIFND 281
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 119/288 (41%), Gaps = 31/288 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + + ++GY FV+F E A+ A+ ++
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATD-PSGESRGYGFVQFEKDESAQSAIDKL 183
Query: 213 KNPVICGKRCGTAP---SEDNDTL---------FVGNICNTWTKEAIKQKLKDYGVEGVE 260
+I K+ P +D + + +V N+ +T T + +K+ YG +
Sbjct: 184 NGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT--IT 241
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320
+ ++ D +G SR F FV F A A + L +F E V A + RE
Sbjct: 242 SAVVMRD--SDGKSRCFGFVNFENADAAAQAVQELN--GKIFNDKELYVGRAQKKSEREM 297
Query: 321 D---------PEIMAHVKT--VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E+ + ++L + + + ++R+ YG++ + R+ S
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVS 356
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
+ GF+ F + E A + +N K V L R + K QA
Sbjct: 357 RGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQA 404
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITRR-SLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
>gi|221057576|ref|XP_002261296.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247301|emb|CAQ40701.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 512
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 23/199 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++FIG + ++ +E VR +FE G V EV + ++ TN +K AFVK A+ A A+
Sbjct: 88 KLFIGRVPKNMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 147
Query: 212 MKN-----PVICGKRCGTAPSE--------------DNDTLFVGNICNTWTKEAIKQKLK 252
+ N P + + A E D LF+G++ + ++E++K+
Sbjct: 148 LNNQRTLDPQLGSLQVKYASGEIMKLGFPQNIESGVDQAKLFIGSLPKSISEESVKEMFS 207
Query: 253 DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVA 312
YG VE + ++ D GL +G +FV F+ A+ A L + G R V+V
Sbjct: 208 PYG--SVEEVFIMKD-NSTGLGKGCSFVKFAYKEQALYAINSLNGKKTLEGC-ARPVEVR 263
Query: 313 FAEPLREPDPEIMAHVKTV 331
FAEP +I +++++
Sbjct: 264 FAEPKSAKQAQIPMNMQSM 282
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 13/208 (6%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
LF+G + +E ++ +++G+ V+ + ++ D + + + AFV + +A A
Sbjct: 89 LFIGRVPKNMEEEQVRPIFEEFGI--VKEVVIIRD-KITNIHKSSAFVKMASISEADNAI 145
Query: 293 KRLQKP---DVVFGHPERTVKVAFAEPLREPDPE-IMAHV--KTVFLDGVPPHWKENQIR 346
+ L D G + VK A E ++ P+ I + V +F+ +P E ++
Sbjct: 146 RSLNNQRTLDPQLGSLQ--VKYASGEIMKLGFPQNIESGVDQAKLFIGSLPKSISEESVK 203
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406
+ YG V + + ++ ST K F+ F+ E A+ IN++N K+ +G ++ +
Sbjct: 204 EMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAINSLNGKKTLEGCAR-PVEV 262
Query: 407 RLSNPMPKTQA-VKGGMSGGFRIGHGSS 433
R + P QA + M HG S
Sbjct: 263 RFAEPKSAKQAQIPMNMQSMQNSAHGIS 290
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI + + Q D+ + F GE++ R+ ST RN+G+AFV + N E A A+++M
Sbjct: 373 LFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAFVSYENIESAAAAISQM 432
Query: 213 KNPVICGKRC 222
+ K+
Sbjct: 433 NGFMALNKKL 442
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,943,782,250
Number of Sequences: 23463169
Number of extensions: 583875626
Number of successful extensions: 2718751
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13376
Number of HSP's successfully gapped in prelim test: 15093
Number of HSP's that attempted gapping in prelim test: 2430228
Number of HSP's gapped (non-prelim): 155612
length of query: 650
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 501
effective length of database: 8,863,183,186
effective search space: 4440454776186
effective search space used: 4440454776186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)