BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006327
(650 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 21/270 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++ + +F R G++ E RL FS N+GYAFV + NKE A A+
Sbjct: 62 EVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMMEFS-GENRGYAFVMYTNKEEALLAIRM 120
Query: 212 MKNPVIC-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N IC GK G S DN LF+G+I KE I +++K EGV ++ +
Sbjct: 121 LNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFVM+ H AMA K + P ++GH T+KVA+A P +E D E M VK
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGH---TIKVAWASPEKEVDEETMQKVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + Y G V R+ K +DY F+ F + A+A +
Sbjct: 237 VLYVRNLMMSTTEETIKAEFNRYKPGVVERV--------KKIRDYAFVHFFRRDYAIAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQA 417
+ +N + DG ++ L+ P+ K A
Sbjct: 289 SVMNGR-LIDG---ARIEVTLAKPVNKEAA 314
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSGGFRIGHGSSRTFSRYGRGSGRAG 447
A+N K DG+ + L+ P+ K ++ RY RG+G
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKD-------------------SYVRYTRGTG--- 317
Query: 448 HHFNRANFQRGRGFYQHGRNH---SSRMGPTEYDFDNRYTEFHGRQF-IGRGGRSFRGGY 503
R +G Y G+ + ++ +G + Y F +G S R
Sbjct: 318 ---GRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQAYAAIPSLHFPATKGHLSNRAII 374
Query: 504 NAPS-RAAAGA 513
APS R AAG
Sbjct: 375 RAPSVRGAAGV 385
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 301 MNGKDLEGENIEI 313
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 155 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 214
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 215 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 272
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 273 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 318
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIF+G + RD ++++ +FE+ G + ++RL + T N+GYAFV F KE A+ A+
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
N I GK G S N+ LFVG+I + TKE I ++ EG+ ++ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V +A+P+ +PDPE+MA VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN---VGTVEWADPIEDPDPEVMAKVK 338
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY FI F + AV +
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 390 INNKEFSDGNSKV 402
+N K+ N ++
Sbjct: 391 MNGKDLEGENIEI 403
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210
+F+G + + T+E + + F ++ E + + H+ +N+G+ F+++ + + A +A
Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 211 E-MKNPVICGKRCGTA----PSEDND--------TLFVGNICNTWTKEAIKQKLKDYGVE 257
M V GT P ED D LFV N+ NT T+E +++ +G
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 362
Query: 258 GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP 316
+E + + D +AF+ F A+ A + + D+ +++ FA+P
Sbjct: 363 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL----EGENIEIVFAKP 408
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+RL +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ +FE+ G + ++RL + + +N+GYAF+ F KE A+ A+
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ I GK G S N+ LFVG+I TKE I ++ EG+ ++ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGF F+ + H A A +RL V V+G+ V V +A+P+ EPDPE+MA VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN---VVTVEWADPVEEPDPEVMAKVK 341
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+F+ + E + +G + R+ K KDY F+ F AAV ++
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 390 INNK 393
+N K
Sbjct: 394 MNGK 397
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK+ AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A +RL + ++GHP + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP---IAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
EIFIG L RD ++++ + E+IG++ E+R+ +F+ N N+GYAFV F+NK AK A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LFVG I T +E I ++K EGV ++ +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K L ++GH + V +AEP E D + M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH---GIAVDWAEPEVEVDEDTMSSVK 231
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I + G V R+ K +DY F+ FS E AV +
Sbjct: 232 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAM 283
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419
A+N K DG+ + L+ P+ K V+
Sbjct: 284 KALNGKVL-DGSP---IEVTLAKPVDKDSYVR 311
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 142/267 (53%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRE 132
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 248
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N+
Sbjct: 249 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNS 302
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 303 LNGTEL-EGSC---LEVTLAKPVDKEQ 325
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 23/294 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
+N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I + I +++ EGV N+ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMQTVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + G V R+ K +DY F+ F++ E AV +
Sbjct: 247 ILYVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAM 298
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQ------AVKGGMSGGFRIGHGSSRTFS 437
N +N E +G+ L L+ P+ K Q A KGG + S +S
Sbjct: 299 NNLNGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYS 350
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 21/277 (7%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFER G++ E RL FS N+GYAFV + KE A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS-GENRGYAFVMYTTKEEAQLAIRI 120
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G I KE I ++K EGV ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H AMA K + ++GH T++V +A+P +E D E M VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGH---TIQVDWADPEKEVDEETMQRVK 236
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E I+ + + G V R+ K +DY F+ F E AVA +
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAM 288
Query: 388 NAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGGMSG 424
+ +N K DG S + L+ P+ K + ++G
Sbjct: 289 SVMNGKCI-DGAS---IEVTLAKPVNKENTWRQHLNG 321
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE +G + E+RL +F +N+GYAFV + +K AKRA+ E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I G+ G S DN LF+G I +E I +++ EGV ++ + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 271 EGLSRGFAFVMFSCHVDAMAAYKRLQKPDV-VFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+ +RGFAFV + H A A ++L + ++GH + V +AEP + D ++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---QIAVDWAEPEIDVDEDVMETVK 246
Query: 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389
+++ + E+ I+ K +G + R K +DY F+ F++ E AV +N
Sbjct: 247 ILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNN 300
Query: 390 INNKEFSDGNSKVKLRARLSNPMPKTQ 416
+N E +G+ L L+ P+ K Q
Sbjct: 301 LNGTEL-EGSC---LEVTLAKPVDKEQ 323
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 17/257 (6%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
E+F+G + RD ++++ VFE+ G + E RL FS N+GYAFV + +E A+RA+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFS-GENRGYAFVMYTTREKAQRAIQL 104
Query: 212 MKNPVI-CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQH 270
+ N I GK G S DN LF+G+I KE I++++ EGV ++ +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 163
Query: 271 EGLSRGFAFVMFSCH-VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK 329
+RGFAFV + H AMA K + ++GH T++V +AEP +E D E M V+
Sbjct: 164 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGH---TIQVDWAEPEKELDEETMQRVR 220
Query: 330 TVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387
+++ + E +R + G V R+ K DY FI F E A+ +
Sbjct: 221 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTAL 272
Query: 388 NAINNKEFSDGNSKVKL 404
++N K +V L
Sbjct: 273 ESMNGKVIDGSPIEVTL 289
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 137 ELNAIAKDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
E+ A+ + H +++G LD T+ + ++F IG+V +R+ ++ T R+ GY
Sbjct: 26 EVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 85
Query: 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEA 246
A+V + + H +RAL E+ +I GK C S+ + L F+ N+ + +A
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 145
Query: 247 IKQKLKDYGVEGVENINLVSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDV 300
+ +G NI Q E G+S+G+ FV + A A K L V
Sbjct: 146 LHDTFAAFG-----NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Query: 301 VFGH----PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
GH +R K E+ A+ +++ + P ++ + R + +G++
Sbjct: 201 FVGHHISKKDRQSKFE----------EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
L+R+ S K + +GF++FSTHE+A A + +N+KE
Sbjct: 251 SATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 29/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 177
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ + F E
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDE- 236
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
+ A+ +++ + P +++ R + YGDV LAR+ T K + +GF++
Sbjct: 237 -------MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVN 289
Query: 377 FSTHEAAVACINAINNKEF 395
F++HE A + +N KEF
Sbjct: 290 FTSHEDASKAVQELNEKEF 308
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-----NILS 171
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLR 318
Q E G S+G+ FV + A A K L V GH A+ R
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH-------HIAKKDR 224
Query: 319 EPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377
+ E+ A+ V++ + E + RD + +G++ LAR+ + K + +GF++F
Sbjct: 225 QSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNF 284
Query: 378 STHEAAVACINAINNKEF 395
++H+ A A + A+N+K+F
Sbjct: 285 TSHDNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 143 KDRKIKKEH------EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
KDR+ K E +++ +D+D T+E+ R +FE+ GE+ L ++ + +++G+ F
Sbjct: 222 KDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGF 281
Query: 197 VKFANKEHAKRALTEMKNPVICGKRC 222
V F + ++A A+ + + G++
Sbjct: 282 VNFTSHDNAAAAVEALNDKDFKGQKL 307
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 22/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + + ++AL E+
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ +A+ +G NI
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-----NILS 181
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP- 322
Q E G S+G+ FV + A A K + +++ E+ V V + P ++
Sbjct: 182 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN--NMLLN--EKKVYVGYHIPKKDRQSK 237
Query: 323 --EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380
E+ A+ +++ + + + RD YGDV LAR+ S K + +GF++F+TH
Sbjct: 238 FEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTH 296
Query: 381 EAAVACINAINNKEF 395
E A + +N KEF
Sbjct: 297 ECAAKAVEELNGKEF 311
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G + ++
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
G SRGFAFV +S A AA K L V GH ER KV
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVE--- 220
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A V++ V + + D +K +G I + L+R+ K +GF+
Sbjct: 221 -------ELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFV 272
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ HE+A ++ +N KE +
Sbjct: 273 NYENHESARKAVDELNEKEVN 293
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD+ + + F G+++ ++ + +++G+AFV ++
Sbjct: 124 RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYS 182
Query: 201 NKEHAKRALTEMKNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A A+ + ++ GK+ + E+ +++ N+ T
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 242
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV------ 300
+ +K +G I++ +G+S+GF FV + H A A L + +V
Sbjct: 243 FEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 301 ---VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
ER ++ + + + E + +++ + W ++++R + + +G +
Sbjct: 299 AGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITS 358
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ S R +GF+ +S+ + A ++ +N K V L R
Sbjct: 359 SKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP--------ADEAETLEDERRELNAIAKDR 145
D+ G + +G V+Y H+ A D++ E A A+T + EL +++
Sbjct: 261 DEKGVSKGFG-FVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+++ E + +++ LD + + +R FE G + ++ ++ + ++G+ FV ++
Sbjct: 320 RLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYS 378
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ + A +A++EM GK GT P
Sbjct: 379 SPDEATKAVSEMN-----GKMIGTKP 399
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 32/261 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V + N +RAL +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + L F+ N+ + +A+ +G + ++
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFAE 315
G SRGFAFV +S A AA K L V GH ER KV
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVE--- 220
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
E+ A V++ V + + D +K +G I + L+R+ K +GF+
Sbjct: 221 -------ELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFV 272
Query: 376 DFSTHEAAVACINAINNKEFS 396
++ HE+A ++ +N KE +
Sbjct: 273 NYENHESARKAVDELNEKEVN 293
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 143 KDRKIKKEHE--IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+D ++K + IFI LD+ + + F G+++ ++ + +++G+AFV ++
Sbjct: 124 RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYS 182
Query: 201 NKEHAKRALTEMKNPVI----------CGKRCGTAPSEDN----DTLFVGNICNTWTKEA 246
E A A+ + ++ GK+ + E+ +++ N+ T
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 242
Query: 247 IKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV------ 300
+ +K +G I++ +G+S+GF FV + H A A L + +V
Sbjct: 243 FEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 301 ---VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR 357
ER ++ + + + E + +++ + W ++++R + + +G +
Sbjct: 299 AGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITS 358
Query: 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ R+ S R +GF+ +S+ + A ++ +N K V L R
Sbjct: 359 SKVMRDDSGVSR-GFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEP--------ADEAETLEDERRELNAIAKDR 145
D+ G + +G V+Y H+ A D++ E A A+T + EL +++
Sbjct: 261 DEKGVSKGFG-FVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+++ E + +++ LD + + +R FE G + ++ ++ + ++G+ FV ++
Sbjct: 320 RLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYS 378
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAP 226
+ + A +A++EM GK GT P
Sbjct: 379 SPDEATKAVSEMN-----GKMIGTKP 399
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 165
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L V GH ++ + F
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 223
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ V++ + E + R+ + +G++ L+R+ K + +GF++
Sbjct: 224 ------EMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVN 276
Query: 377 FSTHEAAVACINAINNKEF 395
FSTHE+A A ++ +N KE
Sbjct: 277 FSTHESAQAAVDEMNEKEI 295
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 170
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 228
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + +++ R + +G++ L+R+ K + +GF
Sbjct: 229 --------EMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 279
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTHE+A A + +N+KE
Sbjct: 280 VNFSTHESAQAAVEEMNDKEI 300
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F +IG V +R+ ++ T R+ GYA+V + ++AL E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 213 KNPVICGKRCGTAPSEDNDTL---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269
+I G+ C S+ + L GNI AI K NI Q
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 181
Query: 270 HE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEPLREPD 321
E G S+G+ FV + A A K L + V GH P++ + F
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE------- 234
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
E+ A+ V++ + + + R+ +G+V LAR+ K + +GF++F+THE
Sbjct: 235 -EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHE 292
Query: 382 AAVACINAINNKEF 395
AA ++ +N K+F
Sbjct: 293 AAAQAVDELNGKDF 306
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 113 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-----NILS 167
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 168 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD-- 225
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ +++ + P E + R + +G++ L+R+ K + +GF
Sbjct: 226 --------EMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRD-PEGKSRGFGF 276
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++STHE+A A ++ +++KE
Sbjct: 277 VNYSTHESAQAAVDEMHDKEV 297
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 224 TAPSEDND----TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAF 279
T+P+ +N +L+VG + + T+ + + G V +I + D S G+A+
Sbjct: 40 TSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQ--VASIRVCRDAVTR-RSLGYAY 96
Query: 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVK-TVFLDGVPP 338
V ++ D A + L ++ G P R + + DP + + VF+ +
Sbjct: 97 VNYNNTADGERALEDLNY-TLIKGKPCRIM-------WSQRDPALRKTGQGNVFIKNLDS 148
Query: 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ +A++ K YGF+ + T EAA I +N +D
Sbjct: 149 AIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 206
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 222
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + E + R + +G++ L+R+ K + +GF
Sbjct: 223 --------EMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGF 273
Query: 375 IDFSTHEAAVACINAINNKEF 395
+++STH++A A ++ +N+KE
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEV 294
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 168
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 226
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + + + R + +G++ L+R+ K + +GF
Sbjct: 227 --------EMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 277
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTH++A A ++ +N+KE
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEI 298
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 34/261 (13%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + N +RAL ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I GK C S+ + L F+ N+ +A+ +G NI
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-----NILS 168
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH----PERTVKVAFA 314
Q E G S+G+ FV + A A K L V GH +R K
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE-- 226
Query: 315 EPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGF 374
E+ A+ V++ + + + R + +G++ L+R+ K + +GF
Sbjct: 227 --------EMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGF 277
Query: 375 IDFSTHEAAVACINAINNKEF 395
++FSTH++A A ++ +N+KE
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEI 298
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 30/259 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG+V +R+ ++ T R+ GYA+V + + E ++AL E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK C S+ + L F+ N+ + +A+ +G NI
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-----NILS 164
Query: 265 VSDIQHE-GLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGH--PERTVKVAFAEP 316
Q E G S+G+ FV + A A K L + V GH P++ F
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 317 LREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376
E+ A+ +++ + + R+ + +GD+ +AR+ K + +GF++
Sbjct: 222 -----EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVN 275
Query: 377 FSTHEAAVACINAINNKEF 395
+ HEAA ++ +N+ EF
Sbjct: 276 YIRHEAAAVAVDHLNDIEF 294
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 173 RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
+ G+ + ++ K ++KG+ FV F+N + A +A+TEM +I GK A ++ D
Sbjct: 407 KAGDKVTIKGEKKI-LGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDV 465
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 132/289 (45%), Gaps = 19/289 (6%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHE---IFIGGLDRDATQEDVRKVFERIG 175
D ++ A++ E L+ E + + K E +++G L+ ++ + +F IG
Sbjct: 3 DITDKTAEQLEQLKIEEQTAPTTTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIG 62
Query: 176 EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL-- 233
V +R+ ++ TN + GYA+V F + E +A+ ++ +I GK C S+ + +L
Sbjct: 63 SVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRK 122
Query: 234 ------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
++ N+ +++ + +G + + + +D G+SRGF FV F D
Sbjct: 123 KGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKVATD--ENGVSRGFGFVHFENESD 178
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIR 346
A A + + ++ E V + ++ R+ E+ A V++ + + +
Sbjct: 179 ARDAIEAVD--GMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFE 236
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+ YG + VL ++ S K + +GF++F H AA ++ +N EF
Sbjct: 237 ELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEF 284
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 23 SSKQKEPALVEV-AKHNDIIEAIFQYKEETDEDPEEEELENVDDKEEPETVPVDKEEDLK 81
S K ++ L EV AK ++ Y + D++ +EE E + K T V E+D +
Sbjct: 203 SKKDRQSKLEEVKAKFTNV------YVKNIDQETSQEEFEELFGKYGKITSAV-LEKDSE 255
Query: 82 SKLLGENFQSELDDYGSYEDYGDCVD-YGEHDEEEFADDDM--EEPADEAETLEDERREL 138
KL G F + +ED+ E +E EF + + E L++ +++
Sbjct: 256 GKLRGFGFVN-------FEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
Query: 139 NAIAKDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
A A+ K+ K +F+ LD E +++ F G + ++ ++ T ++G+ F
Sbjct: 309 EA-ARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGF 366
Query: 197 VKFANKEHAKRALTEMKNPVICGK 220
V F+ E A +A+TE ++ GK
Sbjct: 367 VCFSTPEEATKAITEKNQQIVAGK 390
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 16/286 (5%)
Query: 119 DDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI 178
D E+ A++ E L + ++ +++ +++G LD ++ + +F IG V
Sbjct: 3 DITEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVS 62
Query: 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL----- 233
+R+ ++ T + GYA+V F + + AK A+ ++ I GK C S+ + +L
Sbjct: 63 SIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGA 122
Query: 234 ---FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290
F+ N+ +A+ +G + + + +D G S+GF +V F A
Sbjct: 123 GNIFIKNLHPDIDNKALYDTFSVFG--NILSSKVATD--ETGKSKGFGYVHFEEDESASE 178
Query: 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKENQIRDQI 349
A L ++ E V ++ RE E M A+ V++ + + + + +
Sbjct: 179 AIDALN--GMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV 236
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395
+G +VL R + K +GF++F HE AV C+ +NN EF
Sbjct: 237 AKFGKTDSVVLERT-PEGENKGFGFVNFVNHEDAVKCVEELNNTEF 281
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 41/270 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L D + + F G ++ ++ + T ++KG+ +V F E A A+ +
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 213 KNPVICGKRCGTAP--------------SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ G+ P + +++ NI T + ++ + +G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFG--- 240
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ ++V + EG ++GF FV F H DA+ + L + G P + V A+
Sbjct: 241 -KTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFK-GQP---LYVNRAQKKY 295
Query: 319 EPDPEI-----------MAHVK--TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365
E E+ MA + +F+ + + ++ ++ YG I A+ M+
Sbjct: 296 ERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGT---ITSAKVMT 352
Query: 366 T--AKRKDYGFIDFSTHEAAVACINAINNK 393
T K K +GF+ FST E A I N +
Sbjct: 353 TENGKSKGFGFVCFSTPEEATKAITEKNQQ 382
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 86 GENFQSELDDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDR 145
GEN ++ ++ED CV+ E + EF + + A+ + ++EL +
Sbjct: 253 GENKGFGFVNFVNHEDAVKCVE--ELNNTEFKGQPLY--VNRAQKKYERQQELKKQYEAT 308
Query: 146 KIKKEHE-----IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
+++K + +FI LD + + + F G + ++ ++KG+ FV F+
Sbjct: 309 RMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFS 367
Query: 201 NKEHAKRALTEMKNPVICGKRCGTAPSEDNDT 232
E A +A+TE ++ GK A ++ D
Sbjct: 368 TPEEATKAITEKNQQIVAGKPLYVAIAQRKDV 399
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N E ++AL E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 197
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYK-----RLQKPDVVFGH----PERTVKVAFAE 315
+ G ++G+ FV F A AA + L V GH ER KV E
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV---E 254
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375
L+ A+ V++ + E + D +G++ + L ++ + K + +GF+
Sbjct: 255 ALK-------ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFV 306
Query: 376 DFSTHEAAVACINAINNKEF 395
+++ HE A ++ +N+KE+
Sbjct: 307 NYANHECAQKAVDELNDKEY 326
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD + T+++ +F + GE+ + L K+ ++ +G+ FV +AN E A++A+ E+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
+ GK+ ++ LF+ N+ + E +K
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
+ +G + + +++D +G S+GF FV ++ +A A + + ++ G P
Sbjct: 382 AEFSAFGT--ITSAKIMTD--EQGKSKGFGFVCYTTPEEANKAVTEMNQ-RMLAGKP--- 433
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 434 LYVALAQ 440
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
GTAP+ + +L+VG + + T+ + + G V +I + D S G+A+V F
Sbjct: 74 GTAPT--SASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTR-RSLGYAYVNF 128
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKE 342
D A L ++ G P R + +++ R+P M VF+ + P
Sbjct: 129 HNMEDGEKALDELNY-TLIKGRPCR---IMWSQ--RDPSLRKMG-TGNVFIKNLDPAIDN 181
Query: 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G ++ +A + K YGF+ F + E+A A I +N +D
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLND 235
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEPADEAETL-----------EDERRELNAIAKDRKIKKEH--E 152
V+Y H+ + A D++ + + + L E+E R+ K K+ K
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN 365
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI L + E ++ F G + ++ + ++KG+ FV + E A +A+TEM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 213 KNPVICGK 220
++ GK
Sbjct: 425 NQRMLAGK 432
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 24/256 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T+ + VF +G + +R+ ++ T + GYA+V + + E K+A+ E+
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 213 KNPVICGKRCGTAPSE--------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
I G+ C SE + +F+ N+ +A+ + +G E ++
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG----EVLSC 167
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--- 321
+ G SRGF FV F DA A + V G ++V A + + D
Sbjct: 168 KVALDENGNSRGFGFVHFKEESDAKDAI------EAVNGMLMNGLEVYVAMHVPKKDRIS 221
Query: 322 --PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
E A+ +++ + + + YG+++ L ++ + K K +GF++F
Sbjct: 222 KLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVD 280
Query: 380 HEAAVACINAINNKEF 395
H AA + +N KEF
Sbjct: 281 HNAAAKAVEELNGKEF 296
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
I++ +D + T E+ ++F + GE++ L K+ + + KG+ FV F + A +A+ E+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEEL 291
Query: 213 ------KNPVICGK------------------RCGTAPSEDNDTLFVGNICNTWTKEAIK 248
+ G+ R LF+ N+ ++ E +K
Sbjct: 292 NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLK 351
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
++ YG + + ++ D EG S+GF FV FS +A A + +V G P
Sbjct: 352 EEFAPYGT--ITSARVMRD--QEGNSKGFGFVCFSSPEEATKAMTE-KNQQIVAGKP--- 403
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 404 LYVAIAQ 410
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD E +++ F G + R+ ++ N +KG+ FV F++ E A +A+TE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKAMTEK 394
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 395 NQQIVAGKPLYVAIAQRKDV 414
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVK 198
N K+ + ++ IF+G L E ++K FE IG VI R+ T+R++GY +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 199 FANKEHAKRALTEMKN------PVIC-------------GKRCGTAPSEDNDTLFVGNIC 239
F NK +A++A+ EM+ P+ C K+ G PSE +DTLF+GN+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299
++AI + +G V ++ + + + E +GF +V FS DA A LQ
Sbjct: 276 FNADRDAIFELFAKHGE--VVSVRIPTHPETE-QPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 300 VVFGHPERTVKVAFAEP 316
+ R V++ F+ P
Sbjct: 333 I----DNRPVRLDFSSP 345
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286
+E+ T+FVG + + E +K++ + G GV ++ + + SRG+ +V F
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIG--GVIGARVIYE-RGTDRSRGYGYVDFENKS 220
Query: 287 DAMAAYKRLQKPDV-------------VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFL 333
A A + +Q ++ G+ +R K F + EP T+FL
Sbjct: 221 YAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKK--FGDTPSEPS-------DTLFL 271
Query: 334 DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ + + I + +G+V+ + + + T + K +G++ FS E A ++A+
Sbjct: 272 GNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG- 330
Query: 394 EFSDGNSKVKLRARLSNPMP 413
E+ D +R S+P P
Sbjct: 331 EYIDNRP---VRLDFSSPRP 347
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211
++F+G + R AT+E++R FE+ G V+EV L K+ T + +G FVK+A + A RA+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 212 MKNPVICGKRCGTAPSE----DND---------TLFVGNICNTWTKEAIKQKLKDYGVEG 258
+ N + GT P + D + LFVG++ T++ +++ +G
Sbjct: 181 LHNQITL--PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG--H 236
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
VE++ L+ D + SRG FV +S AMAA L + G + + V FAEP R
Sbjct: 237 VEDVYLMRDEYRQ--SRGCGFVKYSSKETAMAAIDGLNGTYTMRGC-NQPLIVRFAEPKR 293
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK 202
++R E ++F+G L++ AT+++V ++F + G V +V L ++ +++G FVK+++K
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSK 261
Query: 203 EHAKRAL 209
E A A+
Sbjct: 262 ETAMAAI 268
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390
+F+ VP E +IR + +G+V+ + L ++ T +++ F+ ++T + A I A+
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 391 NNK-EFSDGNSKVKLR 405
+N+ G V++R
Sbjct: 182 HNQITLPGGTGPVQVR 197
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 132/282 (46%), Gaps = 25/282 (8%)
Query: 124 PADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLH 183
PAD AE E+ E + IA++ +++G L+ + + ++F IG+V +R+
Sbjct: 49 PADSAE----EQGESSGIAENSA-----SLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 184 KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDT--------LFV 235
++ + ++ GYA+V + E ++A+ E+ + G+ C S+ + + +F+
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 236 GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295
N+ +A+ +G + ++ + +D G S+ F FV + A AA + +
Sbjct: 160 KNLHPAIDNKALHDTFSAFG--KILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 296 QKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVPPHWKENQIRDQIKGYGD 354
++ E V ++ RE E M A+ +++ + + E + + +G
Sbjct: 216 N--GMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK 273
Query: 355 VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+ I L ++ + K K +GF++F HEAA + +N+KE +
Sbjct: 274 ITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEIN 314
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 53/335 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI L + + F G+++ V++ + ++K + FV + +E A+ A+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 213 KNPVI------CGKRCGTAPSEDN--------DTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ GK E ++V NI +T++ ++ +G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG--K 273
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318
+ +I L D EG S+GF FV F H A A + L ++ + + V A+ R
Sbjct: 274 ITSIYLEKD--AEGKSKGFGFVNFEEHEAAAKAVEELNDKEI----NGQKIYVGRAQKKR 327
Query: 319 EPDPEIMAHVKTVFLDGVPPHWKEN-------------QIRDQIKGYGDVIRIVLARNMS 365
E E+ + V L+ + + N ++ ++ K +G + + +
Sbjct: 328 ERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-D 386
Query: 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL-------RARLSNPMP----- 413
K K +GF+ FST E A I +N + + V L R++L +
Sbjct: 387 AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQM 446
Query: 414 --KTQAVKGGMSGGFR--IGHGSSRTFSRYGRGSG 444
+ A GG+ G F + +G F GRG+
Sbjct: 447 RMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNA 481
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 219 GKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFA 278
G+ G A E++ +L+VG + + + + + G V +I + D + S G+A
Sbjct: 57 GESSGIA--ENSASLYVGELNPSVNEATLFEIFSPIG--QVASIRVCRDAVSKK-SLGYA 111
Query: 279 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIM-AHVKTVFLDGVP 337
+V + D A + L V G P R + + DP + +F+ +
Sbjct: 112 YVNYHKLEDGEKAIEELNYTPVE-GRPCRIM-------WSQRDPSARRSGDGNIFIKNLH 163
Query: 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
P + D +G ++ + +A + + K +GF+ + T EAA A I ++N +D
Sbjct: 164 PAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLND 222
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G V+ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+AFV F AA K ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYAFVHFETQ---EAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++ +G + + + R+ K K +GF+ + HE
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 DANKAVEEMNGKEIS 257
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD+ + + F G ++ ++ + N +KGYAFV F +E A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ ++ A +++ +++ N E++K+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV--KV 311
++ ++ D G S+GF FV + H DA A K + + G ++ V +
Sbjct: 217 TLSVKVMRD--PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 312 AFAEPLREPDPEIMAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
+ E ++ + V ++ + + ++R + +G + + + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 370 KDYGFIDFSTHEAAVACINAINNK 393
K +GF+ FS+ E A + +N +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGK 220
++ K
Sbjct: 354 NGRIVGSK 361
Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282
A S +L+VG++ + T+ + +K G V +I + D+ S G+A+V F
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAG--PVLSIRVCRDMITR-RSLGYAYVNF 59
Query: 283 SCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWK 341
DA A + DV+ G P R + + DP + + V VF+ +
Sbjct: 60 QQPADAERALDTMNF-DVIKGKPIRIM-------WSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 342 ENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K Y F+ F T EAA I +N +D
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS----KGYAFVHFETQEAADKAIEKMNGMLLND 165
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ +T R+ GYA++ F A+RAL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ G+ S+ + L F+ N+ ++ +A+ +G NI
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
E SRGF FV F H A A + ++ +R V V + RE + E+
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMN--GMLLN--DRKVFVGHFKSRREREAEL 183
Query: 325 MAHV---KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A +++ +P E ++D +G ++ + + R+ S R +GF++F HE
Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSR-CFGFVNFEKHE 242
Query: 382 AAVACINAINNKEFS 396
A + +N KE S
Sbjct: 243 EAQKAVVHMNGKEVS 257
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 232 TLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
+L+VG++ T+ + +K G + +I + D+ S G+A++ F DA A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRDVATRR-SLGYAYINFQQPADAERA 68
Query: 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351
+ +++ G P R + LR+ + V +F+ + + D
Sbjct: 69 LDTMNF-EMLKGQPIRIMWSQRDPGLRK------SGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G+++ +A + ++ +GF+ F THEAA IN +N +D
Sbjct: 122 FGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLND 165
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ LD + +RK F G + ++ +KG+ FV F++ E A +A+TEM
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 213 KNPVICGKRCGTAP 226
G+ GT P
Sbjct: 354 N-----GRIVGTKP 362
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 25/252 (9%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + + +F ++ V +R+ ++ T+R+ GYA+V FAN E A RA+ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 213 KNP--------VICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
++ R + +F+ N+ + +A+ + +G + + +
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT--ILSCKV 177
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKR-----LQKPDVVFGHPERTVKVAFAEPLRE 319
D+ G S+G+ FV F A AA + L V GH R A +E
Sbjct: 178 AMDV--VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV 235
Query: 320 PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379
P V++ +P +++++ YGD+ V+ ++ S R +GF++F +
Sbjct: 236 PS------FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR-SFGFVNFVS 288
Query: 380 HEAAVACINAIN 391
EAA + +N
Sbjct: 289 PEAAAVAVEKMN 300
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 41/277 (14%)
Query: 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205
++ + +FI LD + + + F G ++ ++ + R+KGY FV+F +E A
Sbjct: 141 RLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETA 199
Query: 206 KRALTEMKNPVICGKRC----------------GTAPSEDNDTLFVGNICNTWTKEAIKQ 249
+ A+ ++ ++ K+ G PS N ++V N+ T + +K+
Sbjct: 200 QAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN--VYVKNLPKEITDDELKK 257
Query: 250 KLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309
YG + + ++ D G SR F FV F A A +++ + G E +
Sbjct: 258 TFGKYG--DISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKMN--GISLG--EDVL 309
Query: 310 KVAFAEPLREPDPEI-------------MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356
V A+ + + E+ ++L + + ++++ YG+V
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 369
Query: 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK 393
+ N S + +GF+ +S E A+ + +N K
Sbjct: 370 SCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGK 405
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY 194
RR+ A ++ + +++ L ++ T ++++K F + G++ + K+ S N ++ +
Sbjct: 223 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSF 281
Query: 195 AFVKFANKEHAKRALTEMKNPVICGK-------------------------RCGTAPSED 229
FV F + E A A+ +M N + G+ R
Sbjct: 282 GFVNFVSPEAAAVAVEKM-NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQ 340
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
L++ N+ ++ E +K+ +YG V + ++ + Q GLSRGF FV +S +A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYG--NVTSCKVMMNSQ--GLSRGFGFVAYSNPEEAL 396
Query: 290 AAYKRL 295
A K +
Sbjct: 397 LAMKEM 402
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAM 289
N +L+VG++ + + + V V N+ + D+ H L G+A+V F+ DA
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQ--VAPVHNLRVCRDLTHRSL--GYAYVNFANPEDAS 113
Query: 290 AAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 349
A + L + +R +++ + R+P + VF+ + + +
Sbjct: 114 RAMESLNYAPIR----DRPIRIMLSN--RDPSTRLSGK-GNVFIKNLDASIDNKALYETF 166
Query: 350 KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+G ++ +A ++ + K YGF+ F E A A I+ +N +D
Sbjct: 167 SSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLND 213
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 121/253 (47%), Gaps = 16/253 (6%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L+ + + ++F IG+V +R+ ++ T ++ GYA+V F E ++A+ ++
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I G+ C S+ + +L F+ N+ +A+ +G + + +
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFG--KILSCKV 170
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+D G+S+ F FV + A AA + + ++ E V ++ RE E
Sbjct: 171 ATD--DMGISKCFGFVHYETAEAAEAAIENVN--GMLLNDREVYVGKHISKKDRESKFEE 226
Query: 325 M-AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383
M A+ V+ + + E + + + YG + I L ++ K K +GF++F HE+A
Sbjct: 227 MKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESA 285
Query: 384 VACINAINNKEFS 396
V ++ +N+KE +
Sbjct: 286 VKAVDELNDKEIN 298
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+FI LD E + + F+ G + R+ + T ++KG+ FV F++ E A +A+TEM
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEM 395
Query: 213 KNPVICGKRCGTAPSEDNDT 232
+I GK A ++ D
Sbjct: 396 NQRMIYGKPLYVALAQRKDV 415
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
++ NI +++E K+ + YG + +I L D HEG S+GF FV F H A+ A
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYG--KITSIYLEKD--HEGKSKGFGFVNFENHESAVKAV 289
Query: 293 KRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKEN--------- 343
L ++ + + V A+ RE E+ + L+ + + N
Sbjct: 290 DELNDKEI----NGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345
Query: 344 ----QIRDQIKGYGDVIRIVLARNM--STAKRKDYGFIDFSTHEAAVACINAINNK 393
++ ++ K +G I AR M T K K +GF+ FS+ E A I +N +
Sbjct: 346 IDSEKLEEEFKPFGS---ITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQR 398
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 41/264 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD T+ + ++F IG V +R+ ++ T R+ GYA+V F N +RA+ ++
Sbjct: 49 LYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+I + C S+ + L F+ N+ +A+ +G NI
Sbjct: 109 NYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG-----NILS 163
Query: 265 VSDIQHEGLSRGFAFVMFSC---------HVDAMAAYKRLQKPDVVFGH----PERTVKV 311
+E S G+ FV + HV+ M L V GH ER K+
Sbjct: 164 CKVATNETGSLGYGFVHYETAEAAEAAIKHVNGML----LNDKKVYVGHHIPRKERQAKI 219
Query: 312 AFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371
E A+ V+ V P +++ +G + VL R+ K K
Sbjct: 220 E----------ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDGKSKG 268
Query: 372 YGFIDFSTHEAAVACINAINNKEF 395
+GF++F H A ++ +++ +F
Sbjct: 269 FGFVNFEDHNEAQKAVDELHDSDF 292
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/183 (19%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 143 KDRKIKKEHE------IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAF 196
K+R+ K E ++ +D + T ++ K+F + G++ L ++ ++KG+ F
Sbjct: 213 KERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDGKSKGFGF 271
Query: 197 VKFANKEHAKRALTEMKNPVICGKRCGTAPSEDND------------------------T 232
V F + A++A+ E+ + G++ A ++
Sbjct: 272 VNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 331
Query: 233 LFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292
L++ NI ++ E ++++ +G + + ++ G+SRGF FV +S +A A
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGA--ITSCKIMR--APSGVSRGFGFVCYSAPEEANKAV 387
Query: 293 KRL 295
+
Sbjct: 388 SEM 390
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 30/278 (10%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ N + + GY FV + E A+ A+ +
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL--GYGFVHYETAEAAEAAIKHV 194
Query: 213 KNPVICGKRCGTA---PSEDNDTLF---VGNICNTWTK----EAIKQKLKDYGVEGVENI 262
++ K+ P ++ N N + K E + + + +
Sbjct: 195 NGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKIT 254
Query: 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP 322
+ V +G S+GF FV F H +A A L D + + VA A+ E +
Sbjct: 255 SCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFK----GQKLFVARAQKKSEREE 310
Query: 323 EI-----------MAHVKTV--FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369
E+ +A + V +L +P + + ++R++ +G + + R S R
Sbjct: 311 ELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSR 370
Query: 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+GF+ +S E A ++ +N K + V L R
Sbjct: 371 -GFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 94 DDYGSYEDYGDCVDYGEHDEEEFADDDMEEPADEAETL-----------EDERRELNAIA 142
D+ G + +G V++ +H+E + A D++ + + + L E+E R A
Sbjct: 261 DEDGKSKGFG-FVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAA 319
Query: 143 KDRKIKKEH--EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFA 200
K+ K+ K +++ + E +R+ F G + ++ + S ++G+ FV ++
Sbjct: 320 KNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPS-GVSRGFGFVCYS 378
Query: 201 NKEHAKRALTEMKNPVI 217
E A +A++EM ++
Sbjct: 379 APEEANKAVSEMNGKML 395
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 133/290 (45%), Gaps = 19/290 (6%)
Query: 119 DDMEEPADEAETL--EDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQEDVRKVFERIG 175
D ++ A++ E L +D++++ ++ + ++ +++G L+ ++ + +F IG
Sbjct: 3 DITDKTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIG 62
Query: 176 EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL-- 233
V +R+ ++ T + GYA+V F + E ++A+ ++ I G+ C S+ + +L
Sbjct: 63 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 122
Query: 234 ------FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287
F+ N+ +A+ +G + + + +D G S+GF FV F
Sbjct: 123 KGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKIATD--ENGKSKGFGFVHFEEEGA 178
Query: 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIR 346
A A L ++ E V + R+ E AH +++ + + Q +
Sbjct: 179 AKEAIDALN--GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 347 DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396
+ +G ++ L ++ + K K +GF+++ HE AV + A+N+ E +
Sbjct: 237 ELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELN 285
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++ ++ + T E +++F + G ++ L K+ + + KG+ FV + E A +A+ +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 213 KNPVICGKRCGTAPSEDND------------------------TLFVGNICNTWTKEAIK 248
+ + G++ ++ + LFV N+ ++ E ++
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 249 QKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308
++ YG + + G S+GF FV FS +A A + +V G P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITE-KNQQIVAGKP--- 391
Query: 309 VKVAFAE 315
+ VA A+
Sbjct: 392 LYVAIAQ 398
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+F+ LD E + + F G + ++ + ++KG+ FV F+ E A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 213 KNPVICGKRCGTAPSEDNDT 232
++ GK A ++ D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 30/260 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G LD + T + F ++G V+ VR+ ++ T R+ GY +V F N + A RA+ E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 213 KNPVICGKRCGTAPSEDNDT--------LFVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
+ GK S + + +F+ N+ + +A+ +G N+
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-------NI 150
Query: 265 VS---DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD 321
VS + G S+G+ FV ++ A A ++L G +V LR +
Sbjct: 151 VSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN------GMLLNDKQVYVGPFLRRQE 204
Query: 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKG----YGDVIRIVLARNMSTAKRKDYGFIDF 377
+ A+ KT F + + E+ D +K YG + V+ ++ K K +GF++F
Sbjct: 205 RDSTAN-KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNF 262
Query: 378 STHEAAVACINAINNKEFSD 397
+ A + ++N +F D
Sbjct: 263 ENADDAARAVESLNGHKFDD 282
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD + + F G ++ ++ + S+ ++KGY FV++AN+E A++A+ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 213 KNPVICGKRCGTAP--------SEDNDT----LFVGNICNTWTKEAIKQKLKDYGVEGVE 260
++ K+ P S N T ++V N+ + T + +K +YG +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG--KIT 242
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP--------------- 305
+ ++ D EG S+GF FV F DA A + L GH
Sbjct: 243 SAVVMKD--GEGKSKGFGFVNFENADDAARAVESLN------GHKFDDKEWYVGRAQKKS 294
Query: 306 --ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN 363
E ++V + + L+E + + +++ + P + ++++ +G V + R+
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSS--NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 352
Query: 364 MSTAKRKDYGFIDFSTHEAAVACINAINNK 393
K GF+ F+T E A ++ ++ K
Sbjct: 353 -PNGTSKGSGFVAFATPEEATEAMSQLSGK 381
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L DAT+ + + F G ++ +R+ ++ T R+ GYA+V F A+RAL M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L F+ N+ + +A+ +G NI
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-----NILS 127
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
+ E S+G+ FV F AA + ++K + + + +R V V + +E + E+
Sbjct: 128 CKVVCDENGSKGYGFVHFETQ---EAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++D +G + + + + S K K +GF+ F HE
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHE 242
Query: 382 AAVACINAINNKEFS 396
A ++ +N KE +
Sbjct: 243 DAQKAVDEMNGKELN 257
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 33/279 (11%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IFI LD+ + + F G ++ ++ + N +KGY FV F +E A+RA+ +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 213 KNPVICGKRC--GTAPSEDNDTLFVGNICNTWTKEAIK--------QKLKD-YGVEG-VE 260
++ ++ G S +G +T IK ++LKD +G G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTVKVAFAE 315
++ +++D G S+GF FV F H DA A K L + G ++ KV
Sbjct: 219 SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK--KVERQT 274
Query: 316 PLREPDPEIMAHVKTVFLDGVPPHWK-------ENQIRDQIKGYGDVIRIVLARNMSTAK 368
L+ E M + GV + K + ++R + +G + + M +
Sbjct: 275 ELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGR 331
Query: 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
K +GF+ FS+ E A + +N + + V L R
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283
+APS +L+VG++ T+ + +K G + +I + D+ S G+A+V F
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAG--PILSIRVCRDMITRR-SLGYAYVNFQ 60
Query: 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI-MAHVKTVFLDGVPPHWKE 342
DA A + DV+ G P R + + DP + + V +F+ +
Sbjct: 61 QPADAERALDTMNF-DVIKGKPVRIM-------WSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Query: 343 NQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397
+ D +G+++ ++V N S K YGF+ F T EAA I +N +D
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGS----KGYGFVHFETQEAAERAIEKMNGMLLND 165
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLG-------ENFQSELDDYGS 98
Y + ED ++E L+++ K P +V V +E KSK G E+ Q +D+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 99 YEDYGDCVDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGG 157
E G + G ++ E + +R+ + +DR + + +++
Sbjct: 254 KELNGKQIYVGRAQKK-------------VERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217
LD E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++
Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 218 CGK 220
K
Sbjct: 359 ATK 361
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 29/302 (9%)
Query: 122 EEPADEAETLEDERRELNAIAKDRKIKK--EHEIFIGGLDRDATQEDVRKVFERIGEVIE 179
EE EA E E + ++ K K + +++G LD T+ + ++F IG V
Sbjct: 15 EETTTEAAPAEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTS 74
Query: 180 VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTL------ 233
VR+ ++ T R+ GYA+V F N+ RAL E+ I + C S+ + L
Sbjct: 75 VRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAG 134
Query: 234 --FVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291
++ N+ +A+ +G + + + +D G SRGF FV + A +A
Sbjct: 135 NIYIKNLDPAIDNKALHDTFSAFGQ--ILSCKIATD--EFGNSRGFGFVHYESAESAESA 190
Query: 292 YKRLQ------KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQI 345
+ + K V H ++ ++ E E VF+ + E +
Sbjct: 191 IQHVNGMLLNDKKVFVGPHVPKSDRMQSFE-------EQKNSFTNVFIKNLGTEITEAEF 243
Query: 346 RDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405
+ + +G+ + L+ N K +GF+D+ H+ AV I+ ++ EF GN R
Sbjct: 244 EELVNKFGETSSVHLSTN-DEGKPTGFGFVDYKEHDVAVKAIDGLSETEFK-GNKLFAGR 301
Query: 406 AR 407
A+
Sbjct: 302 AK 303
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 106 VDYGEHDEEEFADDDMEEPADEAETL-----------EDERRELNAIAKDRKIKKEH--E 152
VDY EHD A D + E + L DE R+ ++ K+ K
Sbjct: 272 VDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVN 331
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
++I LD + +R F G + ++ + ++KG+ FV +++ E A +A+TEM
Sbjct: 332 LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEM 390
Query: 213 KNPVICGK 220
+ ++ GK
Sbjct: 391 NHRLVAGK 398
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 21/254 (8%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
+++G L D T+ + + F G ++ +R+ ++ T+ + YA+V F + + A+ AL M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 213 KNPVICGKRCGTAPSEDNDTL--------FVGNICNTWTKEAIKQKLKDYGVEGVENINL 264
VI GK S+ + +L FV N+ + +A+ + +G + + N+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG--NILSCNV 130
Query: 265 VSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEI 324
V D E S+G+ FV F H A A K++ ++ G R V V + +E + E+
Sbjct: 131 VCD---ENGSKGYGFVHFETHEAAERAIKKMNG-MLLNG---RKVFVGQFKSRKEREAEL 183
Query: 325 MAHVK---TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381
A K V++ + +++D +G + + + + S K K +GF+ F HE
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHE 242
Query: 382 AAVACINAINNKEF 395
A ++ +N KE
Sbjct: 243 DAQKAVDEMNGKEL 256
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 35/280 (12%)
Query: 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212
IF+ LD+ + + G ++ + + N +KGY FV F E A+RA+ +M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKM 158
Query: 213 KNPVICGKRCGT--------------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258
++ G++ A +++ +++ N E +K +G
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG--P 216
Query: 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY-----KRLQKPDVVFGHPERTV---- 309
++ +++D G S+GF FV F H DA A K L + G ++ V
Sbjct: 217 ALSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 310 --KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367
K F E +++ D V +++ + + ++R +G + + M
Sbjct: 275 ELKRTF-EQMKQ-DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGG 330
Query: 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407
+ K +GF+ FS+ E A + +N + + V L R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 47 YKEETDEDPEEEELENVDDKEEPE-TVPVDKEEDLKSKLLGENFQSELDDYGSYEDYGDC 105
Y + ED ++E L+++ K P +V V +E KSK G + +ED
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG------FVSFERHEDAQKA 247
Query: 106 VDYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEH-EIFIGGLDRDATQ 164
VD E + + E + +R + +DR + + +++ LD
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDD 307
Query: 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220
E +RK F G + ++ R+KG+ FV F++ E A +A+TEM ++ K
Sbjct: 308 ERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 144/345 (41%), Gaps = 53/345 (15%)
Query: 107 DYGEHDEEEFADDDMEEPADEAETLEDERRELNAIAKDRKIKKEHEIFIGGLDRDATQED 166
DY +DE + D + E+ E ++D + ++ +++G L+ T+
Sbjct: 49 DYKSNDEPVQSQDPISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAF 108
Query: 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI--------- 217
+++V+ +G+ ++V+L +N T N GY FV+FA+ A A++ P+
Sbjct: 109 IQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLN 168
Query: 218 ----CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGL 273
G R + ++FVG++ E L ++ +++D Q +
Sbjct: 169 WASGGGLREKSISKASEYSIFVGDLSPN-VNEFDVYSLFASRYNSCKSAKIMTDPQ-TNV 226
Query: 274 SRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP----------------- 316
SRG+ FV F+ D +A +Q + G +R ++V A P
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQ--GQICG--DRPIRVGLATPKSKAHVFSPVNVVPVSM 282
Query: 317 -------LREPDPEIMAHV-KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368
+P P+ TVF+ G+ E +++ + +G+++ + +
Sbjct: 283 PPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPG----- 337
Query: 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR-ARLSNPM 412
K GF+ F ++A IN + + + GNS+++L R NP+
Sbjct: 338 -KGCGFVQFVNRQSAEIAINQL--QGYPLGNSRIRLSWGRNQNPI 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,948,802
Number of Sequences: 539616
Number of extensions: 14184235
Number of successful extensions: 73552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 1152
Number of HSP's that attempted gapping in prelim test: 57967
Number of HSP's gapped (non-prelim): 8665
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)