Query 006327
Match_columns 650
No_of_seqs 562 out of 3709
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 21:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 1.4E-45 3E-50 368.5 38.7 264 147-421 80-344 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-41 2.3E-46 369.9 35.9 248 149-408 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-42 5.7E-47 367.0 29.8 255 149-408 2-349 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 6.2E-38 1.3E-42 352.9 33.8 253 150-408 88-364 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-37 5.6E-42 347.9 28.2 245 152-405 2-258 (562)
6 KOG0145 RNA-binding protein EL 100.0 1.6E-37 3.4E-42 289.8 21.7 254 149-407 40-357 (360)
7 KOG0127 Nucleolar protein fibr 100.0 2.7E-35 5.8E-40 300.8 23.4 251 150-408 5-378 (678)
8 TIGR01622 SF-CC1 splicing fact 100.0 3.4E-34 7.4E-39 315.3 28.6 248 147-406 86-446 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.6E-34 9.9E-39 313.6 28.6 240 149-408 1-351 (481)
10 KOG0144 RNA-binding protein CU 100.0 2.4E-34 5.2E-39 286.6 20.2 258 149-411 33-507 (510)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-33 4.5E-38 308.4 28.9 239 150-406 96-478 (481)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.6E-33 3.4E-38 314.3 27.9 245 147-405 172-499 (509)
13 KOG0148 Apoptosis-promoting RN 100.0 2.1E-32 4.6E-37 257.6 23.1 227 148-411 4-241 (321)
14 KOG0127 Nucleolar protein fibr 100.0 4E-34 8.6E-39 292.3 11.2 200 145-398 287-565 (678)
15 TIGR01645 half-pint poly-U bin 100.0 1.4E-31 3.1E-36 291.1 30.2 163 145-314 102-281 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 2.2E-30 4.7E-35 269.0 26.3 166 228-405 105-270 (346)
17 KOG0123 Polyadenylate-binding 100.0 5.4E-30 1.2E-34 267.2 20.3 242 153-406 79-347 (369)
18 KOG0123 Polyadenylate-binding 100.0 2.2E-28 4.8E-33 255.2 21.2 239 151-406 2-244 (369)
19 TIGR01659 sex-lethal sex-letha 100.0 3.3E-28 7.1E-33 252.8 19.6 166 147-317 104-275 (346)
20 TIGR01645 half-pint poly-U bin 99.9 1.2E-25 2.6E-30 244.9 20.9 171 230-407 107-283 (612)
21 KOG0124 Polypyrimidine tract-b 99.9 2.4E-25 5.1E-30 217.4 19.4 252 146-404 109-531 (544)
22 KOG0110 RNA-binding protein (R 99.9 1.3E-25 2.9E-30 237.9 17.5 249 148-408 383-693 (725)
23 KOG4212 RNA-binding protein hn 99.9 3.5E-24 7.6E-29 213.9 21.5 145 149-298 43-279 (608)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.3E-24 5E-29 229.2 20.1 166 229-406 2-167 (352)
25 KOG0147 Transcriptional coacti 99.9 4.4E-25 9.6E-30 228.1 12.7 246 148-406 177-526 (549)
26 KOG0148 Apoptosis-promoting RN 99.9 2.8E-24 6.2E-29 202.9 13.9 156 149-317 61-238 (321)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 3.3E-23 7.2E-28 225.8 21.8 190 149-353 137-366 (578)
28 TIGR01622 SF-CC1 splicing fact 99.9 2.7E-23 5.8E-28 228.8 21.0 172 228-407 87-265 (457)
29 KOG0144 RNA-binding protein CU 99.9 5E-24 1.1E-28 213.1 13.2 165 229-402 33-198 (510)
30 KOG0117 Heterogeneous nuclear 99.9 1.5E-21 3.3E-26 196.4 27.1 157 148-319 162-333 (506)
31 KOG4211 Splicing factor hnRNP- 99.9 2.1E-21 4.7E-26 198.3 26.6 243 146-404 6-354 (510)
32 KOG0145 RNA-binding protein EL 99.9 1.9E-22 4.1E-27 189.1 12.9 167 227-405 38-204 (360)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.5E-21 7.5E-26 215.0 20.0 170 226-407 171-374 (509)
34 KOG0110 RNA-binding protein (R 99.9 3.2E-21 6.9E-26 204.8 18.5 163 231-406 386-596 (725)
35 KOG0131 Splicing factor 3b, su 99.9 8.2E-22 1.8E-26 176.2 10.3 164 149-318 8-178 (203)
36 KOG0131 Splicing factor 3b, su 99.9 2.4E-21 5.3E-26 173.2 11.8 169 228-407 7-176 (203)
37 KOG0109 RNA-binding protein LA 99.9 1.6E-21 3.4E-26 186.2 11.2 151 231-411 3-153 (346)
38 KOG0146 RNA-binding protein ET 99.9 2.8E-21 6.2E-26 181.9 12.4 183 220-407 3-364 (371)
39 KOG0109 RNA-binding protein LA 99.8 2.2E-21 4.7E-26 185.2 9.3 158 151-331 3-164 (346)
40 KOG4205 RNA-binding protein mu 99.8 9.5E-20 2E-24 183.6 12.3 230 149-387 5-251 (311)
41 KOG4205 RNA-binding protein mu 99.8 3.2E-18 7E-23 172.5 20.5 171 229-408 5-176 (311)
42 KOG0124 Polypyrimidine tract-b 99.8 2.3E-19 5.1E-24 175.7 11.3 172 231-409 114-291 (544)
43 PLN03134 glycine-rich RNA-bind 99.8 2.3E-17 5E-22 150.3 15.3 83 325-407 31-113 (144)
44 KOG0147 Transcriptional coacti 99.7 1E-17 2.2E-22 174.0 8.2 176 226-409 175-359 (549)
45 KOG0105 Alternative splicing f 99.7 3.7E-16 8E-21 140.0 16.6 164 228-408 4-188 (241)
46 KOG1190 Polypyrimidine tract-b 99.7 4.1E-16 8.8E-21 155.7 17.7 246 148-414 26-379 (492)
47 KOG0120 Splicing factor U2AF, 99.7 3.2E-16 6.8E-21 165.4 14.8 244 147-404 172-488 (500)
48 KOG0146 RNA-binding protein ET 99.7 1.3E-16 2.8E-21 150.7 10.3 164 149-320 18-368 (371)
49 KOG1456 Heterogeneous nuclear 99.6 1.5E-14 3.2E-19 142.9 20.1 243 144-407 25-362 (494)
50 KOG4211 Splicing factor hnRNP- 99.6 1.9E-14 4.1E-19 147.8 20.9 162 231-404 11-178 (510)
51 KOG0105 Alternative splicing f 99.6 2.1E-15 4.5E-20 135.2 11.6 140 148-300 4-175 (241)
52 KOG1190 Polypyrimidine tract-b 99.6 2.8E-14 6E-19 142.7 19.8 236 151-406 151-489 (492)
53 KOG4206 Spliceosomal protein s 99.6 3.3E-14 7.1E-19 133.2 17.7 207 149-405 8-219 (221)
54 KOG1365 RNA-binding protein Fu 99.6 7.3E-15 1.6E-19 145.5 13.3 251 145-404 55-358 (508)
55 PLN03134 glycine-rich RNA-bind 99.6 2.6E-15 5.6E-20 136.9 9.3 81 149-229 33-113 (144)
56 KOG0107 Alternative splicing f 99.6 1.7E-13 3.8E-18 122.4 16.3 74 328-406 10-83 (195)
57 KOG1548 Transcription elongati 99.5 1.1E-13 2.5E-18 136.0 15.8 199 148-405 132-349 (382)
58 KOG0106 Alternative splicing f 99.5 2.2E-14 4.7E-19 136.0 6.5 149 231-402 2-165 (216)
59 KOG0149 Predicted RNA-binding 99.5 6.7E-14 1.4E-18 131.2 8.5 87 327-414 11-97 (247)
60 PF00076 RRM_1: RNA recognitio 99.5 2.1E-13 4.5E-18 108.6 8.8 70 331-401 1-70 (70)
61 KOG4207 Predicted splicing fac 99.5 1.7E-13 3.6E-18 125.4 9.0 81 327-407 12-92 (256)
62 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.2E-18 109.4 7.2 70 153-223 1-70 (70)
63 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.4E-17 126.7 13.2 82 326-407 99-180 (335)
64 KOG4212 RNA-binding protein hn 99.4 2.5E-12 5.3E-17 129.7 15.4 169 228-405 42-291 (608)
65 KOG0149 Predicted RNA-binding 99.4 3E-13 6.5E-18 126.9 8.1 77 150-227 12-88 (247)
66 KOG1457 RNA binding protein (c 99.4 1.8E-12 3.8E-17 120.0 12.4 161 229-396 33-274 (284)
67 KOG0122 Translation initiation 99.4 6.6E-13 1.4E-17 124.9 8.4 80 327-406 188-267 (270)
68 KOG0121 Nuclear cap-binding pr 99.4 5.3E-13 1.1E-17 112.9 6.9 82 146-227 32-113 (153)
69 KOG0121 Nuclear cap-binding pr 99.4 8.3E-13 1.8E-17 111.7 6.8 80 327-406 35-114 (153)
70 KOG0122 Translation initiation 99.4 1.1E-12 2.3E-17 123.5 7.7 82 148-229 187-268 (270)
71 KOG1457 RNA binding protein (c 99.4 5E-12 1.1E-16 117.1 11.9 146 149-301 33-274 (284)
72 PF14259 RRM_6: RNA recognitio 99.4 2.7E-12 5.9E-17 102.3 9.0 70 331-401 1-70 (70)
73 PF14259 RRM_6: RNA recognitio 99.4 1.4E-12 3E-17 104.0 6.9 69 153-222 1-69 (70)
74 KOG0126 Predicted RNA-binding 99.4 6.7E-14 1.5E-18 125.5 -1.1 82 145-226 30-111 (219)
75 KOG0125 Ataxin 2-binding prote 99.3 2.3E-12 5.1E-17 125.9 9.0 83 324-408 92-174 (376)
76 PLN03120 nucleic acid binding 99.3 4.7E-12 1E-16 123.4 10.5 78 328-409 4-81 (260)
77 KOG1456 Heterogeneous nuclear 99.3 7.8E-11 1.7E-15 116.9 19.1 230 150-398 120-475 (494)
78 KOG0113 U1 small nuclear ribon 99.3 2E-12 4.4E-17 124.9 7.5 77 148-224 99-175 (335)
79 KOG4207 Predicted splicing fac 99.3 1.6E-12 3.5E-17 119.0 6.1 83 145-227 8-90 (256)
80 KOG0126 Predicted RNA-binding 99.3 4.5E-13 9.7E-18 120.2 2.0 84 328-411 35-118 (219)
81 PLN03120 nucleic acid binding 99.3 4E-12 8.6E-17 123.9 8.6 76 150-229 4-79 (260)
82 KOG0106 Alternative splicing f 99.3 1.5E-12 3.3E-17 123.5 5.2 138 151-311 2-165 (216)
83 COG0724 RNA-binding proteins ( 99.3 2.1E-11 4.5E-16 124.6 14.2 170 150-389 115-286 (306)
84 KOG0130 RNA-binding protein RB 99.3 7.8E-12 1.7E-16 106.7 8.8 88 321-408 65-152 (170)
85 KOG0107 Alternative splicing f 99.3 4E-12 8.6E-17 113.8 5.9 75 149-228 9-83 (195)
86 PLN03213 repressor of silencin 99.3 1.6E-11 3.5E-16 125.5 9.2 76 327-406 9-86 (759)
87 PLN03121 nucleic acid binding 99.2 1.9E-11 4.2E-16 117.1 8.7 77 149-229 4-80 (243)
88 KOG0114 Predicted RNA-binding 99.2 5.5E-11 1.2E-15 96.9 9.4 76 327-405 17-92 (124)
89 smart00362 RRM_2 RNA recogniti 99.2 4.8E-11 1E-15 94.7 9.0 71 330-402 1-71 (72)
90 PLN03121 nucleic acid binding 99.2 6.2E-11 1.4E-15 113.6 10.5 78 327-408 4-81 (243)
91 KOG0130 RNA-binding protein RB 99.2 1.3E-11 2.7E-16 105.4 5.1 83 145-227 67-149 (170)
92 smart00362 RRM_2 RNA recogniti 99.2 4.7E-11 1E-15 94.7 8.2 71 152-224 1-71 (72)
93 KOG0114 Predicted RNA-binding 99.2 3.4E-11 7.4E-16 98.1 7.2 76 148-226 16-91 (124)
94 smart00360 RRM RNA recognition 99.2 5.9E-11 1.3E-15 93.8 8.7 70 333-402 1-70 (71)
95 PLN03213 repressor of silencin 99.2 3.1E-11 6.7E-16 123.5 8.0 77 149-229 9-87 (759)
96 KOG0111 Cyclophilin-type pepti 99.2 1.6E-11 3.6E-16 113.2 3.9 82 327-408 9-90 (298)
97 smart00360 RRM RNA recognition 99.2 9.7E-11 2.1E-15 92.5 7.9 70 155-224 1-70 (71)
98 KOG0125 Ataxin 2-binding prote 99.1 5.5E-11 1.2E-15 116.5 6.5 78 149-228 95-172 (376)
99 KOG0128 RNA-binding protein SA 99.1 9.7E-12 2.1E-16 135.7 1.3 225 149-404 570-811 (881)
100 cd00590 RRM RRM (RNA recogniti 99.1 5E-10 1.1E-14 89.3 9.7 73 330-403 1-73 (74)
101 smart00361 RRM_1 RNA recogniti 99.1 2.6E-10 5.6E-15 90.7 7.8 61 342-402 2-69 (70)
102 KOG0120 Splicing factor U2AF, 99.1 3E-10 6.6E-15 120.5 9.8 160 147-315 286-490 (500)
103 KOG4210 Nuclear localization s 99.1 3E-10 6.5E-15 114.9 8.8 175 148-404 86-260 (285)
104 KOG0415 Predicted peptidyl pro 99.1 2E-10 4.4E-15 113.2 7.1 86 144-229 233-318 (479)
105 KOG0116 RasGAP SH3 binding pro 99.1 8E-10 1.7E-14 116.1 11.9 78 329-407 289-366 (419)
106 KOG0108 mRNA cleavage and poly 99.1 2.5E-10 5.3E-15 120.7 8.0 81 329-409 19-99 (435)
107 cd00590 RRM RRM (RNA recogniti 99.1 6.6E-10 1.4E-14 88.6 8.2 72 152-224 1-72 (74)
108 COG0724 RNA-binding proteins ( 99.0 5.7E-10 1.2E-14 113.9 9.7 79 328-406 115-193 (306)
109 KOG1365 RNA-binding protein Fu 99.0 7.9E-10 1.7E-14 110.2 9.7 148 149-300 160-349 (508)
110 KOG4307 RNA binding protein RB 99.0 7.1E-09 1.5E-13 110.6 16.9 140 148-293 309-494 (944)
111 PF13893 RRM_5: RNA recognitio 99.0 1.4E-09 3E-14 82.4 8.3 56 345-405 1-56 (56)
112 KOG0111 Cyclophilin-type pepti 99.0 2.3E-10 4.9E-15 105.8 4.4 82 148-229 8-89 (298)
113 KOG0108 mRNA cleavage and poly 99.0 4.8E-10 1E-14 118.5 7.4 79 151-229 19-97 (435)
114 smart00361 RRM_1 RNA recogniti 99.0 1.4E-09 3E-14 86.5 6.7 61 164-224 2-69 (70)
115 KOG4660 Protein Mei2, essentia 98.9 4E-09 8.6E-14 110.9 11.1 71 148-223 73-143 (549)
116 KOG0415 Predicted peptidyl pro 98.9 9.9E-10 2.2E-14 108.4 6.1 86 325-410 236-321 (479)
117 KOG4208 Nucleolar RNA-binding 98.9 3.5E-09 7.5E-14 98.0 8.2 79 327-405 48-127 (214)
118 KOG0129 Predicted RNA-binding 98.9 1.8E-08 3.8E-13 105.2 13.3 144 147-293 256-431 (520)
119 KOG0129 Predicted RNA-binding 98.9 2.9E-08 6.2E-13 103.7 14.1 157 230-389 259-432 (520)
120 KOG4454 RNA binding protein (R 98.8 1.2E-09 2.5E-14 101.4 2.0 140 148-300 7-150 (267)
121 KOG4307 RNA binding protein RB 98.8 1.2E-08 2.7E-13 108.8 9.6 76 329-404 868-943 (944)
122 KOG0132 RNA polymerase II C-te 98.8 4E-09 8.8E-14 114.1 5.1 108 139-252 410-528 (894)
123 PF13893 RRM_5: RNA recognitio 98.8 6.5E-09 1.4E-13 78.7 4.6 55 167-226 1-55 (56)
124 KOG0128 RNA-binding protein SA 98.8 4.4E-10 9.5E-15 123.0 -3.0 150 148-316 665-814 (881)
125 KOG0226 RNA-binding proteins [ 98.7 2.8E-08 6.1E-13 94.5 6.5 165 231-403 97-265 (290)
126 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.9E-08 1.1E-12 101.9 7.7 81 327-407 404-484 (940)
127 KOG4208 Nucleolar RNA-binding 98.7 5.1E-08 1.1E-12 90.3 6.8 78 147-224 46-124 (214)
128 KOG0132 RNA polymerase II C-te 98.6 7.5E-08 1.6E-12 104.5 7.5 75 327-407 420-494 (894)
129 KOG4661 Hsp27-ERE-TATA-binding 98.6 5.7E-08 1.2E-12 101.4 6.3 81 149-229 404-484 (940)
130 KOG0112 Large RNA-binding prot 98.6 3.3E-08 7.1E-13 109.0 4.7 166 142-319 364-533 (975)
131 KOG4206 Spliceosomal protein s 98.6 1.4E-07 3E-12 89.0 7.6 81 327-410 8-92 (221)
132 KOG0153 Predicted RNA-binding 98.6 6.9E-08 1.5E-12 95.9 5.8 80 144-229 222-302 (377)
133 KOG4454 RNA binding protein (R 98.5 4.4E-08 9.5E-13 91.1 3.2 138 227-392 6-147 (267)
134 KOG0153 Predicted RNA-binding 98.5 2.4E-07 5.3E-12 92.0 7.6 75 326-406 226-301 (377)
135 KOG4676 Splicing factor, argin 98.5 2.5E-08 5.5E-13 100.0 0.2 208 150-399 7-217 (479)
136 KOG1995 Conserved Zn-finger pr 98.5 6.4E-06 1.4E-10 82.9 17.1 83 327-409 65-155 (351)
137 KOG0533 RRM motif-containing p 98.5 1.8E-06 4E-11 84.3 12.3 81 328-409 83-163 (243)
138 KOG0112 Large RNA-binding prot 98.4 2.7E-07 5.9E-12 102.0 5.3 155 230-405 372-528 (975)
139 KOG0226 RNA-binding proteins [ 98.4 2.7E-07 6E-12 87.9 4.6 157 151-315 97-268 (290)
140 KOG0533 RRM motif-containing p 98.4 7.6E-07 1.6E-11 86.9 6.9 78 149-227 82-159 (243)
141 KOG4209 Splicing factor RNPS1, 98.3 1.6E-06 3.6E-11 84.9 8.4 81 327-408 100-180 (231)
142 PF04059 RRM_2: RNA recognitio 98.3 2.6E-06 5.6E-11 71.2 7.8 68 151-218 2-71 (97)
143 KOG2193 IGF-II mRNA-binding pr 98.3 2E-07 4.2E-12 94.5 1.3 153 231-405 2-154 (584)
144 KOG4849 mRNA cleavage factor I 98.2 8.9E-05 1.9E-09 73.8 18.3 76 328-403 80-157 (498)
145 KOG4209 Splicing factor RNPS1, 98.2 1.1E-06 2.5E-11 86.1 5.1 82 145-227 96-177 (231)
146 PF04059 RRM_2: RNA recognitio 98.2 8.8E-06 1.9E-10 68.1 9.1 68 329-396 2-71 (97)
147 KOG3152 TBP-binding protein, a 98.2 1.6E-06 3.4E-11 83.0 4.5 74 149-222 73-158 (278)
148 KOG0116 RasGAP SH3 binding pro 98.2 2.1E-06 4.6E-11 90.7 5.5 73 149-222 287-359 (419)
149 KOG4660 Protein Mei2, essentia 98.0 4.5E-06 9.8E-11 88.3 3.3 70 327-401 74-143 (549)
150 KOG1548 Transcription elongati 97.9 2.3E-05 4.9E-10 78.3 7.6 79 328-407 134-220 (382)
151 KOG0151 Predicted splicing reg 97.9 1.8E-05 3.9E-10 85.6 6.8 79 149-227 173-254 (877)
152 PF08777 RRM_3: RNA binding mo 97.8 2.9E-05 6.3E-10 66.6 5.8 70 329-404 2-76 (105)
153 KOG2193 IGF-II mRNA-binding pr 97.8 6.5E-06 1.4E-10 83.7 0.5 147 151-314 2-154 (584)
154 KOG0151 Predicted splicing reg 97.7 4.5E-05 9.8E-10 82.6 6.4 82 327-408 173-257 (877)
155 KOG1995 Conserved Zn-finger pr 97.7 4E-05 8.8E-10 77.3 5.1 85 147-231 63-155 (351)
156 PF11608 Limkain-b1: Limkain b 97.7 0.0001 2.2E-09 58.7 6.2 69 151-229 3-76 (90)
157 PF11608 Limkain-b1: Limkain b 97.7 0.00013 2.7E-09 58.1 6.7 67 329-405 3-74 (90)
158 KOG0921 Dosage compensation co 97.5 0.00046 1E-08 77.2 10.8 16 271-286 898-913 (1282)
159 PF08777 RRM_3: RNA binding mo 97.3 0.00037 8.1E-09 59.7 5.5 59 151-215 2-60 (105)
160 KOG2318 Uncharacterized conser 97.3 0.0025 5.4E-08 68.2 12.2 129 146-313 170-304 (650)
161 COG5175 MOT2 Transcriptional r 97.3 0.00031 6.7E-09 69.8 4.9 102 149-250 113-240 (480)
162 KOG0921 Dosage compensation co 97.2 0.0027 5.8E-08 71.4 11.8 15 477-491 1241-1255(1282)
163 KOG4210 Nuclear localization s 97.2 0.00022 4.8E-09 72.5 3.3 80 149-229 183-263 (285)
164 KOG4849 mRNA cleavage factor I 97.2 0.00031 6.7E-09 70.0 3.8 76 149-224 79-156 (498)
165 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0011 2.4E-08 49.1 5.5 53 150-209 1-53 (53)
166 KOG2416 Acinus (induces apopto 96.9 0.001 2.3E-08 71.0 4.9 66 146-217 440-506 (718)
167 KOG1855 Predicted RNA-binding 96.9 0.036 7.9E-07 57.4 15.6 67 327-393 230-309 (484)
168 KOG0115 RNA-binding protein p5 96.9 0.002 4.3E-08 62.2 6.2 94 287-397 6-99 (275)
169 COG5175 MOT2 Transcriptional r 96.9 0.0025 5.4E-08 63.5 6.8 79 328-406 114-201 (480)
170 KOG1996 mRNA splicing factor [ 96.8 0.0027 5.8E-08 62.2 6.6 63 342-404 300-363 (378)
171 KOG2314 Translation initiation 96.8 0.0025 5.5E-08 67.8 6.8 74 329-403 59-139 (698)
172 KOG1855 Predicted RNA-binding 96.8 0.0012 2.6E-08 68.0 4.3 66 149-214 230-308 (484)
173 KOG0115 RNA-binding protein p5 96.8 0.002 4.3E-08 62.2 5.1 103 204-311 6-108 (275)
174 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.003 6.5E-08 46.8 4.7 52 329-387 2-53 (53)
175 KOG2314 Translation initiation 96.4 0.012 2.6E-07 62.9 8.7 71 148-219 56-132 (698)
176 KOG3152 TBP-binding protein, a 96.4 0.0031 6.7E-08 60.9 3.6 73 327-399 73-157 (278)
177 KOG2202 U2 snRNP splicing fact 96.3 0.0015 3.3E-08 63.2 1.4 61 165-226 83-144 (260)
178 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.022 4.8E-07 48.1 7.3 72 328-401 6-84 (100)
179 KOG2202 U2 snRNP splicing fact 96.1 0.0029 6.3E-08 61.3 1.9 63 343-406 83-146 (260)
180 PF08952 DUF1866: Domain of un 96.1 0.017 3.7E-07 51.8 6.4 56 343-407 51-106 (146)
181 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.028 6E-07 47.5 5.7 71 149-221 5-82 (100)
182 KOG3973 Uncharacterized conser 95.3 0.15 3.3E-06 51.4 10.4 12 236-247 155-166 (465)
183 PRK11634 ATP-dependent RNA hel 95.2 0.18 3.9E-06 57.7 12.5 58 339-405 498-560 (629)
184 KOG1996 mRNA splicing factor [ 95.2 0.044 9.6E-07 53.9 6.2 76 151-226 282-363 (378)
185 KOG4676 Splicing factor, argin 95.2 0.026 5.7E-07 57.7 4.8 77 329-406 8-87 (479)
186 KOG1999 RNA polymerase II tran 95.1 0.081 1.7E-06 60.5 9.0 28 190-217 208-235 (1024)
187 KOG3973 Uncharacterized conser 95.0 0.26 5.7E-06 49.8 11.2 6 344-349 244-249 (465)
188 PF08952 DUF1866: Domain of un 94.8 0.039 8.5E-07 49.5 4.4 69 149-226 26-103 (146)
189 PF10309 DUF2414: Protein of u 94.6 0.13 2.8E-06 39.1 6.2 55 328-390 5-62 (62)
190 PF10446 DUF2457: Protein of u 94.0 0.021 4.6E-07 59.7 1.2 11 29-39 25-35 (458)
191 KOG2416 Acinus (induces apopto 94.0 0.052 1.1E-06 58.5 3.9 78 323-406 439-520 (718)
192 PF08675 RNA_bind: RNA binding 93.9 0.18 3.8E-06 40.6 5.8 55 150-213 9-63 (87)
193 PF10309 DUF2414: Protein of u 93.5 0.36 7.7E-06 36.8 6.7 54 150-212 5-62 (62)
194 KOG2591 c-Mpl binding protein, 92.6 0.34 7.4E-06 52.1 7.3 72 327-405 174-249 (684)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 92.5 0.12 2.5E-06 49.0 3.4 73 149-221 6-84 (176)
196 PF15023 DUF4523: Protein of u 92.2 0.38 8.2E-06 42.7 5.9 71 329-407 87-161 (166)
197 KOG2591 c-Mpl binding protein, 92.2 0.5 1.1E-05 50.9 7.8 87 202-296 147-233 (684)
198 PF08675 RNA_bind: RNA binding 91.8 0.75 1.6E-05 37.1 6.6 54 329-391 10-63 (87)
199 KOG2068 MOT2 transcription fac 91.6 0.15 3.3E-06 51.7 3.3 76 150-225 77-158 (327)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 91.5 0.31 6.8E-06 46.0 5.2 71 328-398 7-83 (176)
201 PF04147 Nop14: Nop14-like fam 91.5 0.21 4.5E-06 59.0 4.7 14 162-175 426-439 (840)
202 PF10446 DUF2457: Protein of u 90.8 0.13 2.9E-06 54.0 2.0 7 151-157 122-128 (458)
203 PF15023 DUF4523: Protein of u 90.6 0.79 1.7E-05 40.7 6.2 70 146-223 82-155 (166)
204 PF11767 SET_assoc: Histone ly 90.1 1.1 2.3E-05 34.8 5.9 54 339-401 11-64 (66)
205 PF07576 BRAP2: BRCA1-associat 89.7 3 6.4E-05 36.0 9.0 67 329-397 14-81 (110)
206 KOG0262 RNA polymerase I, larg 89.5 0.9 1.9E-05 53.5 7.2 20 154-173 1445-1464(1640)
207 KOG2135 Proteins containing th 89.1 0.2 4.3E-06 52.9 1.6 76 149-231 371-447 (526)
208 KOG2253 U1 snRNP complex, subu 89.0 0.25 5.5E-06 54.3 2.4 72 325-405 37-108 (668)
209 KOG1999 RNA polymerase II tran 88.9 0.61 1.3E-05 53.7 5.4 24 274-297 209-232 (1024)
210 KOG2253 U1 snRNP complex, subu 88.9 0.3 6.6E-06 53.7 2.9 70 147-225 37-106 (668)
211 PF04847 Calcipressin: Calcipr 88.4 0.88 1.9E-05 43.2 5.4 59 341-405 8-68 (184)
212 PF07576 BRAP2: BRCA1-associat 88.2 2.6 5.7E-05 36.4 7.7 68 149-218 12-80 (110)
213 KOG4483 Uncharacterized conser 87.0 1.5 3.3E-05 45.4 6.3 64 149-220 390-454 (528)
214 KOG2135 Proteins containing th 86.6 0.39 8.5E-06 50.7 2.0 73 328-407 372-445 (526)
215 PF10567 Nab6_mRNP_bdg: RNA-re 84.7 38 0.00083 34.2 14.6 61 149-209 14-81 (309)
216 KOG2068 MOT2 transcription fac 84.4 0.46 1E-05 48.3 1.3 79 328-406 77-161 (327)
217 KOG4285 Mitotic phosphoprotein 84.0 2.7 5.8E-05 42.1 6.3 63 150-220 197-259 (350)
218 PF03880 DbpA: DbpA RNA bindin 82.9 4.7 0.0001 32.0 6.3 58 339-405 12-74 (74)
219 PF07292 NID: Nmi/IFP 35 domai 82.4 1.6 3.5E-05 35.9 3.4 72 278-350 1-74 (88)
220 COG5593 Nucleic-acid-binding p 82.2 1 2.2E-05 48.4 2.8 20 152-171 800-819 (821)
221 KOG4574 RNA-binding protein (c 82.0 0.65 1.4E-05 52.5 1.3 69 153-227 301-371 (1007)
222 KOG0804 Cytoplasmic Zn-finger 81.8 3.6 7.9E-05 43.5 6.6 68 150-219 74-142 (493)
223 PF04847 Calcipressin: Calcipr 80.7 2.3 4.9E-05 40.4 4.4 59 163-227 8-68 (184)
224 KOG0804 Cytoplasmic Zn-finger 80.0 4.8 0.0001 42.7 6.7 68 328-397 74-142 (493)
225 KOG2318 Uncharacterized conser 79.8 8.1 0.00018 42.3 8.5 84 323-406 169-304 (650)
226 KOG0526 Nucleosome-binding fac 79.5 2.8 6.1E-05 45.3 5.0 10 36-45 411-420 (615)
227 KOG4285 Mitotic phosphoprotein 78.6 3.7 7.9E-05 41.2 5.1 63 329-399 198-260 (350)
228 KOG0943 Predicted ubiquitin-pr 77.9 2.3 5E-05 50.0 3.9 11 12-22 1682-1692(3015)
229 KOG4574 RNA-binding protein (c 77.4 1.7 3.6E-05 49.4 2.7 72 331-408 301-374 (1007)
230 PF05285 SDA1: SDA1; InterPro 76.5 1.3 2.8E-05 46.3 1.5 7 162-168 190-196 (324)
231 PF03880 DbpA: DbpA RNA bindin 75.8 5.9 0.00013 31.4 4.8 58 160-226 11-73 (74)
232 PF09073 BUD22: BUD22; InterP 72.5 2.2 4.8E-05 46.5 2.1 22 379-400 408-429 (432)
233 PF07292 NID: Nmi/IFP 35 domai 69.9 2.2 4.9E-05 35.0 1.1 58 195-252 1-74 (88)
234 PF11767 SET_assoc: Histone ly 68.9 13 0.00028 28.8 5.0 52 161-221 11-62 (66)
235 KOG2891 Surface glycoprotein [ 67.5 13 0.00027 36.8 5.8 86 276-361 76-194 (445)
236 KOG0526 Nucleosome-binding fac 67.5 2.6 5.6E-05 45.5 1.2 7 157-163 534-540 (615)
237 COG5638 Uncharacterized conser 67.4 15 0.00033 38.3 6.6 40 146-185 142-186 (622)
238 KOG2295 C2H2 Zn-finger protein 66.6 2 4.3E-05 46.5 0.2 71 148-218 229-299 (648)
239 COG4547 CobT Cobalamin biosynt 66.3 7.4 0.00016 41.4 4.2 19 149-167 315-333 (620)
240 KOG0943 Predicted ubiquitin-pr 62.9 3.7 8.1E-05 48.4 1.4 11 231-241 1930-1940(3015)
241 COG5406 Nucleosome binding fac 61.6 3.2 7E-05 45.6 0.6 6 30-35 896-901 (1001)
242 KOG2141 Protein involved in hi 59.5 3.7 8.1E-05 46.1 0.7 27 372-398 623-649 (822)
243 KOG2141 Protein involved in hi 57.7 11 0.00025 42.4 4.0 13 336-348 552-564 (822)
244 PF05285 SDA1: SDA1; InterPro 56.6 5.1 0.00011 41.9 1.1 10 242-251 231-240 (324)
245 PHA02664 hypothetical protein; 56.3 28 0.00061 35.2 6.1 17 5-21 392-408 (534)
246 KOG2773 Apoptosis antagonizing 53.0 5.4 0.00012 42.4 0.5 9 396-404 445-453 (483)
247 KOG4410 5-formyltetrahydrofola 52.1 30 0.00065 34.5 5.4 48 151-203 331-378 (396)
248 KOG2147 Nucleolar protein invo 51.9 21 0.00046 40.5 4.9 18 158-175 388-409 (823)
249 KOG4213 RNA-binding protein La 51.7 18 0.00039 33.6 3.6 57 150-211 111-169 (205)
250 COG4907 Predicted membrane pro 51.1 27 0.00059 37.3 5.3 43 342-394 488-539 (595)
251 KOG2044 5'-3' exonuclease HKE1 51.1 1.7E+02 0.0038 33.9 11.7 12 276-287 632-643 (931)
252 PRK10590 ATP-dependent RNA hel 51.0 1.8E+02 0.0039 32.0 12.2 14 196-209 223-236 (456)
253 KOG4410 5-formyltetrahydrofola 50.4 28 0.00061 34.7 4.9 47 329-381 331-378 (396)
254 PRK14891 50S ribosomal protein 50.3 3.8 8.2E-05 35.7 -0.9 10 28-37 46-55 (131)
255 PF03468 XS: XS domain; Inter 50.1 17 0.00037 31.7 3.2 51 152-205 10-69 (116)
256 PF03468 XS: XS domain; Inter 49.9 30 0.00065 30.2 4.6 57 329-388 9-75 (116)
257 smart00596 PRE_C2HC PRE_C2HC d 48.7 20 0.00043 27.9 2.9 62 165-229 2-64 (69)
258 KOG3118 Disrupter of silencing 48.6 20 0.00044 38.5 3.9 17 29-45 14-30 (517)
259 PF05918 API5: Apoptosis inhib 47.9 6.1 0.00013 44.0 0.0 10 199-208 236-245 (556)
260 KOG1924 RhoA GTPase effector D 47.2 69 0.0015 36.8 7.8 13 200-212 207-219 (1102)
261 PF11705 RNA_pol_3_Rpc31: DNA- 46.8 12 0.00026 37.1 1.9 7 6-12 96-102 (233)
262 PF02724 CDC45: CDC45-like pro 46.8 10 0.00022 43.4 1.6 11 285-295 401-411 (622)
263 PF14111 DUF4283: Domain of un 46.6 30 0.00065 31.4 4.5 97 161-265 28-138 (153)
264 KOG2891 Surface glycoprotein [ 46.5 5.9 0.00013 39.0 -0.3 69 149-217 148-247 (445)
265 PF04094 DUF390: Protein of un 45.9 5.3E+02 0.011 29.8 15.1 16 336-351 7-22 (828)
266 PF07530 PRE_C2HC: Associated 45.8 22 0.00048 27.7 2.9 63 165-230 2-65 (68)
267 KOG4019 Calcineurin-mediated s 45.3 19 0.00042 33.6 2.8 71 329-405 11-87 (193)
268 COG4547 CobT Cobalamin biosynt 45.2 23 0.0005 37.9 3.7 8 217-224 426-433 (620)
269 KOG2773 Apoptosis antagonizing 43.2 20 0.00043 38.3 2.9 8 8-15 31-38 (483)
270 PF02714 DUF221: Domain of unk 40.3 41 0.00089 35.0 4.9 57 195-253 1-57 (325)
271 PRK11634 ATP-dependent RNA hel 39.7 62 0.0013 37.3 6.5 10 379-388 500-509 (629)
272 PF09073 BUD22: BUD22; InterP 37.6 49 0.0011 36.1 5.0 7 336-342 405-411 (432)
273 PRK14548 50S ribosomal protein 36.5 1E+02 0.0022 25.2 5.4 53 157-212 27-81 (84)
274 KOG4264 Nucleo-cytoplasmic pro 36.2 22 0.00048 38.5 2.0 18 194-211 211-228 (694)
275 PRK10590 ATP-dependent RNA hel 36.0 1E+02 0.0022 33.9 7.3 10 385-394 358-367 (456)
276 COG5129 MAK16 Nuclear protein 35.8 23 0.00049 34.0 1.7 7 29-35 178-184 (303)
277 PF15513 DUF4651: Domain of un 34.3 90 0.0019 23.8 4.4 18 165-182 9-26 (62)
278 KOG3262 H/ACA small nucleolar 34.0 1.6E+02 0.0035 27.6 6.9 18 343-360 89-106 (215)
279 KOG4434 Molecular chaperone SE 33.0 1.1E+02 0.0024 31.9 6.2 19 4-22 259-277 (520)
280 KOG1295 Nonsense-mediated deca 31.6 52 0.0011 34.6 3.7 70 149-218 6-78 (376)
281 COG1512 Beta-propeller domains 31.1 63 0.0014 32.7 4.2 15 237-251 119-133 (271)
282 COG5271 MDN1 AAA ATPase contai 30.2 23 0.00051 44.5 1.1 22 370-391 4408-4429(4600)
283 COG5193 LHP1 La protein, small 28.9 24 0.00051 37.1 0.7 62 149-210 173-244 (438)
284 COG5638 Uncharacterized conser 28.2 1.3E+02 0.0029 31.7 5.9 80 325-404 143-292 (622)
285 KOG2295 C2H2 Zn-finger protein 28.1 13 0.00029 40.5 -1.2 70 327-396 230-299 (648)
286 PF14111 DUF4283: Domain of un 27.9 73 0.0016 28.8 3.8 82 276-362 56-139 (153)
287 PF11823 DUF3343: Protein of u 27.9 1.8E+02 0.0039 22.7 5.6 61 193-255 2-63 (73)
288 TIGR01651 CobT cobaltochelatas 27.6 47 0.001 37.3 2.8 10 150-159 295-304 (600)
289 TIGR01651 CobT cobaltochelatas 26.9 48 0.001 37.2 2.7 9 342-350 542-550 (600)
290 KOG4483 Uncharacterized conser 26.8 1E+02 0.0022 32.5 4.8 55 327-388 390-445 (528)
291 TIGR03636 L23_arch archaeal ri 26.7 2E+02 0.0043 23.1 5.5 56 153-211 16-73 (77)
292 PTZ00415 transmission-blocking 25.9 42 0.00091 41.9 2.1 8 259-266 397-404 (2849)
293 KOG1980 Uncharacterized conser 25.5 21 0.00045 39.8 -0.3 18 165-182 465-482 (754)
294 KOG2044 5'-3' exonuclease HKE1 24.9 4.5E+02 0.0098 30.7 9.7 16 194-209 633-648 (931)
295 KOG4008 rRNA processing protei 24.8 56 0.0012 31.9 2.4 38 145-182 35-72 (261)
296 COG5593 Nucleic-acid-binding p 24.2 54 0.0012 35.9 2.4 12 40-51 690-701 (821)
297 TIGR00927 2A1904 K+-dependent 23.4 51 0.0011 39.0 2.2 9 192-200 931-939 (1096)
298 KOG4019 Calcineurin-mediated s 22.6 38 0.00082 31.7 0.8 67 151-223 11-83 (193)
299 TIGR02542 B_forsyth_147 Bacter 22.1 2.9E+02 0.0063 23.9 5.8 107 158-285 11-129 (145)
300 KOG3241 Uncharacterized conser 22.1 1E+02 0.0022 28.6 3.4 6 17-22 104-109 (227)
301 KOG1060 Vesicle coat complex A 21.8 80 0.0017 36.5 3.2 6 195-200 772-777 (968)
302 KOG4434 Molecular chaperone SE 21.3 30 0.00064 35.9 -0.2 6 150-155 398-403 (520)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=368.51 Aligned_cols=264 Identities=31% Similarity=0.514 Sum_probs=243.7
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc-cCCcCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l-~g~~i~v~ 225 (650)
....+.|||+.||.++.|++|.-+|++.|+|-+++|++++.+|.++|||||.|++++.|++|++.||+..| .||.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999877 59999999
Q ss_pred CCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006327 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (650)
Q Consensus 226 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~ 305 (650)
.+..+++|||+|||+++++++|.+.|++.++ +|+.|.|...+....++||||||+|.++..|..|...|-...+.+ .
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl--w 236 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL--W 236 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee--c
Confidence 9999999999999999999999999999987 699999999998899999999999999999999998877655543 4
Q ss_pred CcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006327 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (650)
Q Consensus 306 ~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~ 385 (650)
+..+.|.||.|........+.+.+.|||+||+.++|++.|+++|++||.|..|+.++| ||||.|.+.++|.+
T Consensus 237 gn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVK 308 (506)
T ss_pred CCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999877 99999999999999
Q ss_pred HHHHhCCCeeCCCeeEEEEeeccCCCCCCccCCCCC
Q 006327 386 CINAINNKEFSDGNSKVKLRARLSNPMPKTQAVKGG 421 (650)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~~~~~~~~~~~~~gg 421 (650)
||+.|||++|.|..|.|.+++...+..-.+..++++
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g 344 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQG 344 (506)
T ss_pred HHHHhcCceecCceEEEEecCChhhhccchhhhhcc
Confidence 999999999999999999988776655554444443
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-41 Score=369.94 Aligned_cols=248 Identities=30% Similarity=0.503 Sum_probs=221.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc-CCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~-g~~i~v~~~ 227 (650)
..++|||+|||+++++++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|++||+.||+..|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 88999999999999999999999999998885 888889989
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
..+++|||+|||.++|+++|.+.|.+++.. +..+.++..+...++++|||||+|.++++|..|++.|+...+.+ .++
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~eg-vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr 212 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEG-VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 212 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCC-ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCc
Confidence 899999999999999999999999998742 45555544444567889999999999999999999887554322 378
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhccc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~ 385 (650)
.|.|.|+.+........+...++|||+||++.+|+++|+++|++| |.|+.|.++ ++||||+|.+.++|.+
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~k 284 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVK 284 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHH
Confidence 999999998877666666677899999999999999999999999 999999876 4599999999999999
Q ss_pred HHHHhCCCeeCCCeeEEEEeecc
Q 006327 386 CINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
||+.||+..|.|+.|+|.++...
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCC
Confidence 99999999999999999988543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.6e-42 Score=366.99 Aligned_cols=255 Identities=22% Similarity=0.386 Sum_probs=224.2
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
+..+|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|..+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeee
Q 006327 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (650)
Q Consensus 229 ------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~ 302 (650)
..++|||+|||..+++++|+.+|..+|. |..+.++.+. .++.++|||||+|.+.++|..|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~- 157 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ--IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS- 157 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC--EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-
Confidence 3568999999999999999999999998 9999998874 47789999999999999999999999997652
Q ss_pred CCCCcceeecccCCCCCCCc------------------------------------------------------------
Q 006327 303 GHPERTVKVAFAEPLREPDP------------------------------------------------------------ 322 (650)
Q Consensus 303 g~~~~~l~v~~a~~~~~~~~------------------------------------------------------------ 322 (650)
+ ....|.|.++........
T Consensus 158 g-~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 158 G-CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred C-CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 1 235667766642220000
Q ss_pred ---------------------------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEE
Q 006327 323 ---------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (650)
Q Consensus 323 ---------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV 375 (650)
.......+|||+|||+.+++++|+++|++||.|..|+|+++..|+.++|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 00011236999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
+|.+.++|.+||..|||..|.|+.|+|.++...
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999987643
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.2e-38 Score=352.89 Aligned_cols=253 Identities=19% Similarity=0.390 Sum_probs=223.7
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC--
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS-- 227 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~-- 227 (650)
..+|||+|||.++++++|+++|++||.|.+|+|+.+ .+++++|||||+|.+.++|.+|++.|++..+.++.|.|...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 357999999999999999999999999999999988 57889999999999999999999999999999998876432
Q ss_pred ---------CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCC
Q 006327 228 ---------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (650)
Q Consensus 228 ---------~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~ 298 (650)
...++|||+||+.++|+++|+++|..||. |..+.++.+. +++++|||||+|.+.++|.+|++.|++.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~--i~~~~i~~~~--~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE--ITSAAVMKDG--SGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC--EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 23467999999999999999999999999 9999999874 7889999999999999999999999999
Q ss_pred CeeeCCCCcceeecccCCCCCCCc-------------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCC
Q 006327 299 DVVFGHPERTVKVAFAEPLREPDP-------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (650)
Q Consensus 299 ~~~~g~~~~~l~v~~a~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 365 (650)
.+.....++.+.|.++..+..... .......+|||+||+..+|+++|+++|++||.|+.|+|+.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 884333377888887765433210 11234578999999999999999999999999999999999 6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 366 ~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
++.++|||||+|.+.++|.+||..|||+.|.|+.|.|.++...
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 8999999999999999999999999999999999999987643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-37 Score=347.85 Aligned_cols=245 Identities=23% Similarity=0.436 Sum_probs=221.4
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC--
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED-- 229 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~-- 229 (650)
+|||+|||.++|+++|+++|++||.|++|+|+++..|++++|||||+|.+.++|.+||..|++..|.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999977642
Q ss_pred ------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006327 230 ------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (650)
Q Consensus 230 ------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g 303 (650)
..+|||+||+.++++++|+++|+.||. |..|+|+.+. +++++|||||+|.+.++|.+|+..|++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~--i~~~~i~~~~--~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN--ILSCKVATDE--NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC--cceeEeeecC--CCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 467999999999999999999999998 9999999873 788999999999999999999999999877
Q ss_pred CCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006327 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A 383 (650)
.++.|.|.................++|||+||+.++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|
T Consensus 155 -~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 155 -NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred -cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHH
Confidence 478888876554433322233455789999999999999999999999999999999884 688999999999999999
Q ss_pred HHHHHHhCCCeeC----CCeeEEEEe
Q 006327 384 VACINAINNKEFS----DGNSKVKLR 405 (650)
Q Consensus 384 ~~Ai~~lng~~~~----g~~i~v~~~ 405 (650)
.+|++.||+..|. |+.+.|...
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecc
Confidence 9999999999999 888777654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=289.83 Aligned_cols=254 Identities=22% Similarity=0.405 Sum_probs=226.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
....|.|.-||..+|+++|+.+|...|+|++|+|++|+.+|++.||+||.|.++++|++|+..||+..|..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeee
Q 006327 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (650)
Q Consensus 229 ~------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~ 302 (650)
+ ..+|||.+||+.+|.++|.++|.+||. |..-+|+.| +.++.++|.+||.|....+|+.|++.||+..-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~- 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR--IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS- 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh--hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCC-
Confidence 5 468999999999999999999999998 777777777 468999999999999999999999999997642
Q ss_pred CCCCcceeecccCCCCCC----------------------------------------------------------Cccc
Q 006327 303 GHPERTVKVAFAEPLREP----------------------------------------------------------DPEI 324 (650)
Q Consensus 303 g~~~~~l~v~~a~~~~~~----------------------------------------------------------~~~~ 324 (650)
| ...+|.|.|+...... .+..
T Consensus 196 g-~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 196 G-CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred C-CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 3 2577888887321100 0001
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||-||..++++.-|.++|.+||.|..|+|++|..|.+.+|||||++.+.++|..||..|||..++++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 11247999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 754
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=300.79 Aligned_cols=251 Identities=25% Similarity=0.398 Sum_probs=221.6
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
..||||++||+.++.++|.++|+.+|+|..|.++.++.++.++||+||.|+-.++++.|++.+++..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999888754421
Q ss_pred --------------------------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcce
Q 006327 230 --------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 277 (650)
Q Consensus 230 --------------------------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~ 277 (650)
..+|+|.|||+.+.+.+|+.+|+.||. |.+|.|.+.. .++-.||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~--V~Ei~IP~k~--dgklcGF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK--VVEIVIPRKK--DGKLCGF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce--EEEEEcccCC--CCCccce
Confidence 457999999999999999999999999 9999999763 6666699
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCC--------------------------------------
Q 006327 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE-------------------------------------- 319 (650)
Q Consensus 278 aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~-------------------------------------- 319 (650)
|||.|....+|..|++.+|+..+ .+++|.|.||-++..
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i----~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e 236 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKI----DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGE 236 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCcee----cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccc
Confidence 99999999999999999999999 599999999922110
Q ss_pred ---------------------------------------CC--------ccccccceeeeecCCCCCCCHHHHHHHhccc
Q 006327 320 ---------------------------------------PD--------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352 (650)
Q Consensus 320 ---------------------------------------~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 352 (650)
.. ........+|||+|||+++|+++|.++|++|
T Consensus 237 ~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF 316 (678)
T KOG0127|consen 237 EDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF 316 (678)
T ss_pred ccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh
Confidence 00 0000112689999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-CeeCCCeeEEEEeecc
Q 006327 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-----NN-KEFSDGNSKVKLRARL 408 (650)
Q Consensus 353 G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l-----ng-~~~~g~~i~v~~~~~~ 408 (650)
|.|..+.|+.++.|++++|+|||.|.+..+|..||++. .| ..|.|+.|+|..++..
T Consensus 317 G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 317 GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999999999999999999999999999999876 33 6789999999987654
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.4e-34 Score=315.25 Aligned_cols=248 Identities=23% Similarity=0.405 Sum_probs=212.3
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3467899999999999999999999999999999999999999999999999999999999997 899999999887754
Q ss_pred CC------------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHH
Q 006327 227 SE------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (650)
Q Consensus 227 ~~------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A 288 (650)
+. ..++|||+|||..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~--i~~v~~~~d~-~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD--IEDVQLHRDP-ETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcC-CCCccceEEEEEECCHHHH
Confidence 32 1478999999999999999999999999 9999999885 4679999999999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeecccCCCCC------------------------------------C------------
Q 006327 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLRE------------------------------------P------------ 320 (650)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~------------------------------------~------------ 320 (650)
.+|+..|++..+ .++.|.|.|+..... .
T Consensus 242 ~~A~~~l~g~~i----~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (457)
T TIGR01622 242 KEALEVMNGFEL----AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGS 317 (457)
T ss_pred HHHHHhcCCcEE----CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccc
Confidence 999999999777 478888888421000 0
Q ss_pred --------------C---c--------------------cccccceeeeecCCCCCCC----------HHHHHHHhcccC
Q 006327 321 --------------D---P--------------------EIMAHVKTVFLDGVPPHWK----------ENQIRDQIKGYG 353 (650)
Q Consensus 321 --------------~---~--------------------~~~~~~~~l~V~nLp~~~t----------~~~l~~~F~~~G 353 (650)
. + .......+|+|.||....+ .++|++.|++||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 318 KIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC
Confidence 0 0 0112356788999955433 368999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 354 ~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.|+.|.|... ...|++||+|.++++|.+|++.|||+.|+|+.|.|.+..
T Consensus 398 ~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 398 GVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred CeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999643 367999999999999999999999999999999998754
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.6e-34 Score=313.58 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=201.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc--cCCcccCCcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l--~~~~l~g~~i~v~~ 226 (650)
++++|||+|||+++|+++|+++|++||.|..|.|+++ +++|||+|.+.++|.+|++.| ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999853 689999999999999999874 67889999888765
Q ss_pred CCC------------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHH
Q 006327 227 SED------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (650)
Q Consensus 227 ~~~------------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A 288 (650)
+.. ..+|+|.||+..+|+++|+++|+.||. |..|.|+++. .+++|||+|.+.++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~--V~~v~i~~~~-----~~~~afVef~~~~~A 147 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK--VLRIVTFTKN-----NVFQALVEFESVNSA 147 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC--EEEEEEEecC-----CceEEEEEECCHHHH
Confidence 421 126899999999999999999999999 9999998752 246899999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeecccCCCCCC-------------------------------Cc---------------
Q 006327 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREP-------------------------------DP--------------- 322 (650)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~-------------------------------~~--------------- 322 (650)
.+|++.||+..+.-+ .+.|+|.|+.+.... .+
T Consensus 148 ~~A~~~Lng~~i~~~--~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 225 (481)
T TIGR01649 148 QHAKAALNGADIYNG--CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGY 225 (481)
T ss_pred HHHHHHhcCCcccCC--ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccc
Confidence 999999999988532 245666665431100 00
Q ss_pred --------------------------------------------cccccceeeeecCCCC-CCCHHHHHHHhcccCCeeE
Q 006327 323 --------------------------------------------EIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIR 357 (650)
Q Consensus 323 --------------------------------------------~~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~ 357 (650)
....+.++|||+||++ .+|+++|+++|++||.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~ 305 (481)
T TIGR01649 226 SSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER 305 (481)
T ss_pred ccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE
Confidence 0012456999999998 6999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 358 v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
|+|+++ .+|||||+|.+.++|..||..|||..|.|+.|+|.++...
T Consensus 306 vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 306 VKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 999987 3799999999999999999999999999999999886443
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=286.63 Aligned_cols=258 Identities=27% Similarity=0.485 Sum_probs=226.7
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc-ccC--CcCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICG--KRCGTA 225 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~-l~g--~~i~v~ 225 (650)
+.-+|||+.||..|+|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++.. |-| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34579999999999999999999999999999999999999999999999999999999999998754 444 355565
Q ss_pred CCC-------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCC
Q 006327 226 PSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (650)
Q Consensus 226 ~~~-------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~ 298 (650)
.++ ..++|||+.|++.+|+.+|+++|.+||. |++|.|++++ .+.+||||||+|.+.+.|..|++.||+.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~--Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH--IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc--cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccc
Confidence 554 2678999999999999999999999999 9999999995 7999999999999999999999999999
Q ss_pred CeeeCCCCcceeecccCCCCCCC---------------------------------------------------------
Q 006327 299 DVVFGHPERTVKVAFAEPLREPD--------------------------------------------------------- 321 (650)
Q Consensus 299 ~~~~g~~~~~l~v~~a~~~~~~~--------------------------------------------------------- 321 (650)
..+.|+ ..+|.|.|+++++.+.
T Consensus 189 ~tmeGc-s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 189 QTMEGC-SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred eeeccC-CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 999886 7888999982111000
Q ss_pred --------------------------------------------------------------------------------
Q 006327 322 -------------------------------------------------------------------------------- 321 (650)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (650)
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence
Q ss_pred ----------------------------------------------------------------------ccccccceee
Q 006327 322 ----------------------------------------------------------------------PEIMAHVKTV 331 (650)
Q Consensus 322 ----------------------------------------------------------------------~~~~~~~~~l 331 (650)
.........|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 0000012579
Q ss_pred eecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeeccCCC
Q 006327 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411 (650)
Q Consensus 332 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (650)
||.+||-+.-+.+|-..|..||.|+..+|..|+.|+-+++|+||.|++..+|..||..|||..|+.+.++|.++.....+
T Consensus 428 fiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred eeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765544
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.1e-33 Score=308.41 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=198.2
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC---------
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--------- 220 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~--------- 220 (650)
-.+|||.||++.+|+++|+++|+.||.|+.|.|+++. ..++|||+|.+.++|.+|++.||+..|.+.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 3589999999999999999999999999999998763 246899999999999999999999988642
Q ss_pred ---cCCCC----C-------------------------------------------------------------------
Q 006327 221 ---RCGTA----P------------------------------------------------------------------- 226 (650)
Q Consensus 221 ---~i~v~----~------------------------------------------------------------------- 226 (650)
.|.|. .
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 11110 0
Q ss_pred --------------------CCCCCcceeCCcCC-CccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCH
Q 006327 227 --------------------SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (650)
Q Consensus 227 --------------------~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~ 285 (650)
....++|||+||+. .+|+++|+++|+.||. |..|+|+++ .+|||||+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~--V~~vki~~~------~~g~afV~f~~~ 323 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN--VERVKFMKN------KKETALIEMADP 323 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC--eEEEEEEeC------CCCEEEEEECCH
Confidence 01345899999998 6999999999999999 999999886 269999999999
Q ss_pred HHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCc--------------------------------cccccceeeee
Q 006327 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--------------------------------EIMAHVKTVFL 333 (650)
Q Consensus 286 e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~--------------------------------~~~~~~~~l~V 333 (650)
++|..|+..||+..+ .++.|+|.++.......+ ....++.+|||
T Consensus 324 ~~A~~Ai~~lng~~l----~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 324 YQAQLALTHLNGVKL----FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred HHHHHHHHHhCCCEE----CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 999999999999988 489999988754211000 00124568999
Q ss_pred cCCCCCCCHHHHHHHhcccCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe------eEEEEe
Q 006327 334 DGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN------SKVKLR 405 (650)
Q Consensus 334 ~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~------i~v~~~ 405 (650)
+|||..+|+++|+++|+.||. |+.|++.... + ..+++|||+|.+.++|.+||..||++.|.++. |+|.++
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999998 8888886543 2 25789999999999999999999999999985 777665
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 478 ~ 478 (481)
T TIGR01649 478 T 478 (481)
T ss_pred c
Confidence 3
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.6e-33 Score=314.30 Aligned_cols=245 Identities=21% Similarity=0.360 Sum_probs=202.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhcc------------CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERI------------GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~------------G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
....++|||+|||+.+|+++|+++|.++ +.|..|.+ ++.+|||||+|.+.++|.+||+ |++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4467899999999999999999999985 23444444 4568999999999999999995 999
Q ss_pred CcccCCcCCCCCC-----------------------------------CCCCcceeCCcCCCccHHHHHHHHhhcCCcce
Q 006327 215 PVICGKRCGTAPS-----------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (650)
Q Consensus 215 ~~l~g~~i~v~~~-----------------------------------~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i 259 (650)
..|.|+.|.|... ...++|||+|||..+|+++|+++|+.||. |
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i 322 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD--L 322 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--e
Confidence 9999988876421 12368999999999999999999999998 9
Q ss_pred EEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCc-----------------
Q 006327 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP----------------- 322 (650)
Q Consensus 260 ~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~----------------- 322 (650)
..+.|+.+. .++.++|||||+|.+.++|..|+..|++..+ .++.|.|.++........
T Consensus 323 ~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 323 KAFNLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred eEEEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 999999885 4889999999999999999999999999988 478888888743221100
Q ss_pred ------cccccceeeeecCCCCC--C--------CHHHHHHHhcccCCeeEEEEeecC---CCCCcccEEEEEeCCHHHH
Q 006327 323 ------EIMAHVKTVFLDGVPPH--W--------KENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 323 ------~~~~~~~~l~V~nLp~~--~--------t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~G~afV~F~~~~~A 383 (650)
....++.+|+|.||... + ..++|+++|++||.|+.|.|++.. .++...|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 00124578999999642 1 236899999999999999998753 3456789999999999999
Q ss_pred HHHHHHhCCCeeCCCeeEEEEe
Q 006327 384 VACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
++||..|||..|.|+.|.|.+.
T Consensus 478 ~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHHHHHcCCCEECCeEEEEEEe
Confidence 9999999999999999988874
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-32 Score=257.61 Aligned_cols=227 Identities=20% Similarity=0.392 Sum_probs=187.9
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..-+||||+||..++||+-|..||++.|.|+.|+|+.+- -.+..|..- +.+-+. ..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------~~v~wa~~p-------~nQsk~-t~ 59 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------LKVNWATAP-------GNQSKP-TS 59 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------hccccccCc-------ccCCCC-cc
Confidence 356899999999999999999999999999999998761 000011100 100000 01
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...-.+||+.|...++.+.|++.|.+||+ |.+++|++|+ .++++|||+||.|-..++|+.||..||+.-| ..|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGe--vS~akvirD~-~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl----G~R 132 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGE--VSDAKVIRDM-NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL----GRR 132 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccc--cccceEeecc-cCCcccceeEEeccchHHHHHHHHHhCCeee----ccc
Confidence 11346899999999999999999999999 9999999996 5999999999999999999999999999888 589
Q ss_pred ceeecccCCCCCCCc-----------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEE
Q 006327 308 TVKVAFAEPLREPDP-----------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~-----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~ 376 (650)
.|+..|+..+..... ......++|||+||+..+|+++|++.|++||.|..|+|+++ +||+||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 999999976542111 11224589999999999999999999999999999999987 7899999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCCeeEEEEeeccCCC
Q 006327 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411 (650)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (650)
|++.|+|..||..|||++|.|..|+|.|-+.....
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999999997654433
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=292.27 Aligned_cols=200 Identities=24% Similarity=0.372 Sum_probs=149.9
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc-----cC-Cccc
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-----KN-PVIC 218 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l-----~~-~~l~ 218 (650)
.......||||+|||+++|+++|.++|++||+|..+.|+.++.|++++|+|||.|.+..+|+.||... .+ ..|.
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999976 22 4677
Q ss_pred CCcCCCCCCCC-------------------------------------------------------------------CC
Q 006327 219 GKRCGTAPSED-------------------------------------------------------------------ND 231 (650)
Q Consensus 219 g~~i~v~~~~~-------------------------------------------------------------------~~ 231 (650)
|+.|.|..+.. .+
T Consensus 367 GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrt 446 (678)
T KOG0127|consen 367 GRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRT 446 (678)
T ss_pred ccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehh
Confidence 88877654321 35
Q ss_pred cceeCCcCCCccHHHHHHHHhhcC----CcceEEEEEecccc--ccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006327 232 TLFVGNICNTWTKEAIKQKLKDYG----VEGVENINLVSDIQ--HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (650)
Q Consensus 232 ~l~v~nLp~~~te~~l~~~F~~~G----~~~i~~i~i~~d~~--~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~ 305 (650)
.|.|.|||..++...|..++...- ...+..|+.+.... ..+.+.||+||.|..++.|.+|++.+ |.
T Consensus 447 RL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~-G~------- 518 (678)
T KOG0127|consen 447 RLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL-GV------- 518 (678)
T ss_pred hhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc-cc-------
Confidence 688899999999999998876541 11122333333322 24678899999999999999998754 11
Q ss_pred CcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006327 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (650)
Q Consensus 306 ~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~ 385 (650)
-+...|.++ +.+...++++|++|++|..+.-|..
T Consensus 519 lkq~~Vefe----------------------------------------------v~~~k~~~sk~q~f~q~~~hK~a~~ 552 (678)
T KOG0127|consen 519 LKQAKVEFE----------------------------------------------VDGVKAGRSKGQGFQQFEKHKRALM 552 (678)
T ss_pred cccceEEEE----------------------------------------------eccchhhhhhhhhHHHHHhhhhhhc
Confidence 011111110 0111247789999999999998888
Q ss_pred HHHHhCCCeeCCC
Q 006327 386 CINAINNKEFSDG 398 (650)
Q Consensus 386 Ai~~lng~~~~g~ 398 (650)
++..+|.+.+...
T Consensus 553 e~r~~~pr~~t~~ 565 (678)
T KOG0127|consen 553 ELRWLNPRKETAA 565 (678)
T ss_pred ccccCCCccchHH
Confidence 8888777765543
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.4e-31 Score=291.13 Aligned_cols=163 Identities=16% Similarity=0.365 Sum_probs=147.3
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+.....++|||+|||+++|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC-----------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHH
Q 006327 225 APSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (650)
Q Consensus 225 ~~~~-----------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~ 287 (650)
.... ..++|||+||+..+++++|+++|+.||. |..|+|++++ .+++++|||||+|.+.++
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~--I~svrl~~D~-~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC--eeEEEEEecC-CCCCcCCeEEEEECCHHH
Confidence 5432 2368999999999999999999999999 9999999985 478899999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCcceeeccc
Q 006327 288 AMAAYKRLQKPDVVFGHPERTVKVAFA 314 (650)
Q Consensus 288 A~~A~~~l~~~~~~~g~~~~~l~v~~a 314 (650)
|.+|+..||+..+ .++.|+|.++
T Consensus 259 A~kAI~amNg~el----gGr~LrV~kA 281 (612)
T TIGR01645 259 QSEAIASMNLFDL----GGQYLRVGKC 281 (612)
T ss_pred HHHHHHHhCCCee----CCeEEEEEec
Confidence 9999999998876 3666666554
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.2e-30 Score=269.04 Aligned_cols=166 Identities=23% Similarity=0.411 Sum_probs=149.5
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...++|||+|||+++|+++|+++|+.+|. |+.|+|+.+. .+++++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~--V~~v~i~~d~-~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l----~gr 177 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGP--INTCRIMRDY-KTGYSFGYAFVDFGSEADSQRAIKNLNGITV----RNK 177 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecC-CCCccCcEEEEEEccHHHHHHHHHHcCCCcc----CCc
Confidence 35789999999999999999999999999 9999999985 4899999999999999999999999999888 489
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
.|+|.++.+.... ...++|||.|||..+|+++|+++|++||.|+.|.|+++..+++++|||||+|.+.++|++||
T Consensus 178 ~i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 178 RLKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred eeeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 9999998764322 23468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeeCCCeeEEEEe
Q 006327 388 NAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 388 ~~lng~~~~g~~i~v~~~ 405 (650)
+.||+..|.+..+.|.+.
T Consensus 253 ~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVR 270 (346)
T ss_pred HHhCCCccCCCceeEEEE
Confidence 999999998854444443
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.4e-30 Score=267.24 Aligned_cols=242 Identities=22% Similarity=0.419 Sum_probs=212.6
Q ss_pred EEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC----
Q 006327 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE---- 228 (650)
Q Consensus 153 lfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~---- 228 (650)
|||.||+.+++..+|.++|+.||+|++|++.++. .| ++|| ||+|.+.+.|.+|++.+|+..+.+++|.|....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999984 45 9999 999999999999999999999999998774332
Q ss_pred ----------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCC
Q 006327 229 ----------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (650)
Q Consensus 229 ----------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~ 298 (650)
..+.+++.+++.+++...|..+|..+|. |+.+.++.+. .+++++|+||.|.++++|..|+..|++.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~--i~s~~v~~~~--~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS--ITSVAVMRDS--IGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCc--ceEEEEeecC--CCCCCCccceeecChhHHHHHHHhccCC
Confidence 2567899999999999999999999999 9999999984 7789999999999999999999999998
Q ss_pred CeeeCCCCcceeecccCCCCC-------------CCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCC
Q 006327 299 DVVFGHPERTVKVAFAEPLRE-------------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (650)
Q Consensus 299 ~~~~g~~~~~l~v~~a~~~~~-------------~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 365 (650)
.. .+..+.|..+..+.. ..+........|+|.||+..++.+.|+.+|+.||.|+.++|+.+ .
T Consensus 232 ~~----~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~ 306 (369)
T KOG0123|consen 232 IF----GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-E 306 (369)
T ss_pred cC----CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-c
Confidence 87 355555555544221 11122345678999999999999999999999999999999988 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 366 ~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.++++||+||+|.+.++|..|+..+|+..+.++.+.|.+..
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 68899999999999999999999999999999998887765
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-28 Score=255.16 Aligned_cols=239 Identities=23% Similarity=0.442 Sum_probs=213.5
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC-
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (650)
..|||+ +++|+..|.++|+.+|+|.+|+|+++. | +.|||||.|.++++|.+||.++|...|.|++|+++++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 6 999999999999999999999999999999999999865
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
...|||.||+..++...|.++|+.||. |..|+++.+. .| ++|| ||+|.+.+.|.+|+..+|+..+ .++.|
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~--ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll----~~kki 145 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN--ILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLL----NGKKI 145 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC--eeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCccc----CCCee
Confidence 445899999999999999999999999 9999999984 44 9999 9999999999999999999888 48888
Q ss_pred eecccCCCCCCCc---cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 310 KVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 310 ~v~~a~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
.|........... .....-+.++|.|++.++++..|..+|.++|.|..+.|+.+. .+.++||+||.|.++++|..|
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHH
Confidence 8877765443221 133445789999999999999999999999999999999985 456999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEee
Q 006327 387 INAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (650)
+..||+..+.+..+.|.-+.
T Consensus 225 v~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred HHhccCCcCCccceeecccc
Confidence 99999999998877766443
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.3e-28 Score=252.76 Aligned_cols=166 Identities=24% Similarity=0.396 Sum_probs=151.5
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||+|++|+|++++.|++++|||||+|.+.++|.+||+.|++..|.+++|+|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 227 SE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 227 ~~------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
+. ..++|||+|||..+|+++|+++|++||. |..|+|+++. .++++++||||+|.+.++|++||+.|++..+
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~--V~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ--IVQKNILRDK-LTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCC--EEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 53 3678999999999999999999999999 9999999884 5899999999999999999999999999876
Q ss_pred eeCCCCcceeecccCCC
Q 006327 301 VFGHPERTVKVAFAEPL 317 (650)
Q Consensus 301 ~~g~~~~~l~v~~a~~~ 317 (650)
.. ..+.|+|.++...
T Consensus 261 ~g--~~~~l~V~~a~~~ 275 (346)
T TIGR01659 261 EG--GSQPLTVRLAEEH 275 (346)
T ss_pred CC--CceeEEEEECCcc
Confidence 32 2478888888764
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.2e-25 Score=244.92 Aligned_cols=171 Identities=21% Similarity=0.410 Sum_probs=151.8
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
.++|||+||++.+++++|+++|..||. |..|.|+.+. .+++++|||||+|.+.++|.+|++.||+..+ .++.|
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~--I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i----~GR~I 179 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNI 179 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC--EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE----eccee
Confidence 568999999999999999999999999 9999999985 4889999999999999999999999999887 48999
Q ss_pred eecccCCCCCCC------ccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006327 310 KVAFAEPLREPD------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 310 ~v~~a~~~~~~~------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A 383 (650)
+|.+........ .......++|||+||+..+++++|+++|++||.|+.|+|+++..+++++|||||+|.+.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 998654322111 11122357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeCCCeeEEEEeec
Q 006327 384 VACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.+||..||+..|+|+.|+|.+++.
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999887654
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.4e-25 Score=217.42 Aligned_cols=252 Identities=16% Similarity=0.347 Sum_probs=205.7
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
...--|+|||+.|.+++.++-|+..|..||+|++|.+..|+.|++++|||||+|+-.|.|+.|++.||+.++.|+.|+|.
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC-----------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHH
Q 006327 226 PSED-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (650)
Q Consensus 226 ~~~~-----------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A 288 (650)
...+ -++|||..+.++.++++|+.+|+.||+ |..|++.+.+ ..+.++||+||+|.+....
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~--I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc--eeeEEeeccC-CCCCccceeeEEeccccch
Confidence 5432 578999999999999999999999999 9999999996 4678899999999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeeccc------------------------------------------------------
Q 006327 289 MAAYKRLQKPDVVFGHPERTVKVAFA------------------------------------------------------ 314 (650)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a------------------------------------------------------ 314 (650)
..|+..||--++ .+.-|+|..+
T Consensus 266 ~eAiasMNlFDL----GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSp 341 (544)
T KOG0124|consen 266 SEAIASMNLFDL----GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSP 341 (544)
T ss_pred HHHhhhcchhhc----ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCc
Confidence 999998886554 2444444333
Q ss_pred ---------------------------CC------------------------------CCCC-----Cc----------
Q 006327 315 ---------------------------EP------------------------------LREP-----DP---------- 322 (650)
Q Consensus 315 ---------------------------~~------------------------------~~~~-----~~---------- 322 (650)
.| ++.+ .+
T Consensus 342 A~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~ 421 (544)
T KOG0124|consen 342 APRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSE 421 (544)
T ss_pred cccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhh
Confidence 00 0000 00
Q ss_pred -------------------cccccceeeeecCC--CCCCC---HHHHHHHhcccCCeeEEEEeecCCCCCc----ccEEE
Q 006327 323 -------------------EIMAHVKTVFLDGV--PPHWK---ENQIRDQIKGYGDVIRIVLARNMSTAKR----KDYGF 374 (650)
Q Consensus 323 -------------------~~~~~~~~l~V~nL--p~~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~G~af 374 (650)
.....++.|.++|+ |.+++ +.+|.+.|.+||.|..|.|...+.++.. --.-|
T Consensus 422 QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIF 501 (544)
T KOG0124|consen 422 QEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIF 501 (544)
T ss_pred hhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheee
Confidence 00012356778887 44554 4689999999999999999876554421 22479
Q ss_pred EEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 375 IDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 375 V~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
|+|....++.+|+.+|+|+.|.|+.+..++
T Consensus 502 VefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 502 VEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eeechhhHHHHHHHhhccceecCceeehhh
Confidence 999999999999999999999999876553
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=237.85 Aligned_cols=249 Identities=20% Similarity=0.296 Sum_probs=203.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...+.|+|+|||..+..++|..+|..||.|..|.|... | -.|+|+|....+|.+|+..|....+...++.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 35588999999999999999999999999999965321 1 24999999999999999998765443332211100
Q ss_pred --------------------------------------------------------CCCCcceeCCcCCCccHHHHHHHH
Q 006327 228 --------------------------------------------------------EDNDTLFVGNICNTWTKEAIKQKL 251 (650)
Q Consensus 228 --------------------------------------------------------~~~~~l~v~nLp~~~te~~l~~~F 251 (650)
...++|||.||++.+|.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 012349999999999999999999
Q ss_pred hhcCCcceEEEEEeccc--cccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCC----Ccccc
Q 006327 252 KDYGVEGVENINLVSDI--QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP----DPEIM 325 (650)
Q Consensus 252 ~~~G~~~i~~i~i~~d~--~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~----~~~~~ 325 (650)
...|. |..|.|...+ ...-.|.|||||+|.+.++|+.|++.|+++.+ .++.|.|.++...... .....
T Consensus 537 ~k~G~--VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl----dGH~l~lk~S~~k~~~~~gK~~~~k 610 (725)
T KOG0110|consen 537 SKQGT--VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL----DGHKLELKISENKPASTVGKKKSKK 610 (725)
T ss_pred HhcCe--EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee----cCceEEEEeccCccccccccccccc
Confidence 99998 8877765543 22345779999999999999999999999988 6999999998722111 11112
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|.|+|||+.++..+|+.+|..||.|..|+|+.....+.++|||||+|-++.+|.+|+.+|..+.+.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 23679999999999999999999999999999999988666778999999999999999999999999999999999997
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 643
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=3.5e-24 Score=213.86 Aligned_cols=145 Identities=26% Similarity=0.447 Sum_probs=128.6
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~-~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..+.|||.|||+++.+++|+++|.. .|+|+.|.|..| .+|+++|||.|+|+++|.+++|++.||...+.|++|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4567999999999999999999975 889999999998 67999999999999999999999999999999998875432
Q ss_pred CC------------------------------------------------------------------------------
Q 006327 228 ED------------------------------------------------------------------------------ 229 (650)
Q Consensus 228 ~~------------------------------------------------------------------------------ 229 (650)
.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 11
Q ss_pred -------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhC
Q 006327 230 -------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (650)
Q Consensus 230 -------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~ 296 (650)
..++||.||...+..+.|++.|.-.|. |+.|.+-.+. .+.++||+.++|..+-.|..|+..|+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk--v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK--VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee--eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhc
Confidence 357889999999999999999999998 9988887774 78999999999999999999999888
Q ss_pred CC
Q 006327 297 KP 298 (650)
Q Consensus 297 ~~ 298 (650)
..
T Consensus 278 ~~ 279 (608)
T KOG4212|consen 278 RQ 279 (608)
T ss_pred cC
Confidence 53
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=2.3e-24 Score=229.24 Aligned_cols=166 Identities=23% Similarity=0.400 Sum_probs=149.7
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
..++|||+|||..+|+++|+++|+.||. |..|+|+++. .+++++|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~d~-~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l----~g~~ 74 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE--IESCKLVRDK-VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL----QNKT 74 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC--EEEEEEEEcC-CCCccceEEEEEECcHHHHHHHHhhcccEEE----CCee
Confidence 3679999999999999999999999999 9999999984 4789999999999999999999999999887 5899
Q ss_pred eeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
|+|.++.+.... ...++|||+|||..+++++|+.+|++||.|..+.|+.+..++.++|||||+|.+.++|..||.
T Consensus 75 i~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~ 149 (352)
T TIGR01661 75 IKVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIK 149 (352)
T ss_pred EEEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 999998775432 134689999999999999999999999999999999998889999999999999999999999
Q ss_pred HhCCCeeCCCeeEEEEee
Q 006327 389 AINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 389 ~lng~~~~g~~i~v~~~~ 406 (650)
.|||..+.|....|.+..
T Consensus 150 ~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 150 TLNGTTPSGCTEPITVKF 167 (352)
T ss_pred HhCCCccCCCceeEEEEE
Confidence 999999998665555443
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=4.4e-25 Score=228.12 Aligned_cols=246 Identities=22% Similarity=0.366 Sum_probs=203.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
+..+|||+-.|+..++.-+|.+||+.+|+|.+|+|+.++.+++++|.|||+|.+.+.+..||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 356899999999999999999999999999999999999999999999999999999999995 8999999999887654
Q ss_pred CC--------------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHH
Q 006327 228 ED--------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (650)
Q Consensus 228 ~~--------------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~ 287 (650)
.. -..|||+||.+++|++.|+..|+.||. |+.|.++.+. .+|+++||+||+|.+.++
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~-~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDS-ETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc--ceeeeecccc-ccccccCcceEEEecHHH
Confidence 32 123899999999999999999999999 9999999984 499999999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCcceeecccCCCCC------------------------------------------------
Q 006327 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE------------------------------------------------ 319 (650)
Q Consensus 288 A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~------------------------------------------------ 319 (650)
|.+|+..||+.++ .++.|+|....-...
T Consensus 333 ar~a~e~lngfel----AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~ 408 (549)
T KOG0147|consen 333 ARKALEQLNGFEL----AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISA 408 (549)
T ss_pred HHHHHHHhcccee----cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhH
Confidence 9999999999665 467666643200000
Q ss_pred -------------------CCcccc-------ccceeeeecCCCC--CCC--------HHHHHHHhcccCCeeEEEEeec
Q 006327 320 -------------------PDPEIM-------AHVKTVFLDGVPP--HWK--------ENQIRDQIKGYGDVIRIVLARN 363 (650)
Q Consensus 320 -------------------~~~~~~-------~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~ 363 (650)
....+. .++.++.+.|+=. ..| .++|.+.|.+||.|..|.|..+
T Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n 488 (549)
T KOG0147|consen 409 LLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN 488 (549)
T ss_pred HHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC
Confidence 000001 2234566666622 222 2788899999999999988654
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 364 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 364 ~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
+-|+.||.|.+.++|..|+.+|||.+|.|+.|++.+-.
T Consensus 489 -----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 489 -----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred -----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 45999999999999999999999999999999988743
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.8e-24 Score=202.90 Aligned_cols=156 Identities=26% Similarity=0.554 Sum_probs=145.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
...-|||+-|..+++.++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..||+..|.+|.|+..++.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999876552
Q ss_pred ----------------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHH
Q 006327 229 ----------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (650)
Q Consensus 229 ----------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e 286 (650)
++++|||+||+.-+|++.|+++|..||. |.+|++.++ +||+||.|.+++
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvFk~-------qGYaFVrF~tkE 211 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVFKD-------QGYAFVRFETKE 211 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEecc-------cceEEEEecchh
Confidence 4789999999999999999999999999 999999998 499999999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeecccCCC
Q 006327 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (650)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~ 317 (650)
.|..||..+|++++ .+..+++.|.+..
T Consensus 212 aAahAIv~mNntei----~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEI----GGQLVRCSWGKEG 238 (321)
T ss_pred hHHHHHHHhcCcee----CceEEEEeccccC
Confidence 99999999999999 5888998887653
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=3.3e-23 Score=225.80 Aligned_cols=190 Identities=21% Similarity=0.362 Sum_probs=154.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEEe-cCCCCCCcceEEEEEeCHHHHHHHHHhccC--CcccCCcCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHK-NFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~~-d~~tg~~~G~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~v 224 (650)
..++|||+|||+++|+++|.++|++++. |+.+.++. ...+++++|||||+|.+.++|.+|++.|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999863 55555443 234568899999999999999999998764 3577888887
Q ss_pred CCCCC-----------CCcceeCCcCCCccHHHHHHHHhhc--CCcceEEEEEeccccccCCCcceEEEEecCHHHHHHH
Q 006327 225 APSED-----------NDTLFVGNICNTWTKEAIKQKLKDY--GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (650)
Q Consensus 225 ~~~~~-----------~~~l~v~nLp~~~te~~l~~~F~~~--G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A 291 (650)
.++.. .++|||+||+.++|+++|+++|++| |. |+.|++++ +||||+|.+.++|.+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~--I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK--VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc--eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 65543 4679999999999999999999999 87 99988754 5999999999999999
Q ss_pred HHHhCCCCeeeCCCCcceeecccCCCCCCCc-----------------------cccccceeeeecCCCCCCCHHHHHHH
Q 006327 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP-----------------------EIMAHVKTVFLDGVPPHWKENQIRDQ 348 (650)
Q Consensus 292 ~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~-----------------------~~~~~~~~l~V~nLp~~~t~~~l~~~ 348 (650)
++.||+..+ .++.|+|.|+.+...... .......++++.||++.++++.|.++
T Consensus 286 i~~lnG~~i----~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 286 MDELNGKEL----EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred HHHhCCCEE----CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 999999988 599999999987533200 01113567888888888888877777
Q ss_pred hcccC
Q 006327 349 IKGYG 353 (650)
Q Consensus 349 F~~~G 353 (650)
|..+|
T Consensus 362 f~~~g 366 (578)
T TIGR01648 362 PRMPG 366 (578)
T ss_pred cccCc
Confidence 77665
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.7e-23 Score=228.79 Aligned_cols=172 Identities=20% Similarity=0.320 Sum_probs=150.8
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...++|||+|||..+++++|+++|+++|. |..|.|+.+. .+++++|||||+|.+.++|.+||. |++..+ .++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~d~-~~~~skg~afVeF~~~e~A~~Al~-l~g~~~----~g~ 158 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK--VRDVQCIKDR-NSRRSKGVAYVEFYDVESVIKALA-LTGQML----LGR 158 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeecC-CCCCcceEEEEEECCHHHHHHHHH-hCCCEE----CCe
Confidence 45679999999999999999999999998 9999999984 578999999999999999999996 888877 478
Q ss_pred ceeecccCCCCCCCc-------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 006327 308 TVKVAFAEPLREPDP-------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~ 380 (650)
.|.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.
T Consensus 159 ~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred eeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 888877643322111 1112257999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 381 EAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 381 ~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
++|.+||..|||..|.|+.|.|.++..
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999998763
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5e-24 Score=213.12 Aligned_cols=165 Identities=27% Similarity=0.446 Sum_probs=147.6
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
..-+|||+-||+.|+|.+|+++|++||. |.+|.|++| +.++.++|||||.|.+.++|.+|+.+|++...+.| ...+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~--V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG-~~~p 108 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGN--VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG-MHHP 108 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCc--eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCC-CCcc
Confidence 3568999999999999999999999999 999999999 46899999999999999999999999999988777 3788
Q ss_pred eeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
|.|.+++..+.... ...+|||+-|+..+|+.+|+++|++||.|++|.|+++. .+.+||||||+|.+.+.|..||+
T Consensus 109 vqvk~Ad~E~er~~----~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 109 VQVKYADGERERIV----EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eeecccchhhhccc----cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHH
Confidence 99999987665542 34799999999999999999999999999999999994 68899999999999999999999
Q ss_pred HhCCCe-eCCCeeEE
Q 006327 389 AINNKE-FSDGNSKV 402 (650)
Q Consensus 389 ~lng~~-~~g~~i~v 402 (650)
.|||.. +.|....+
T Consensus 184 a~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPL 198 (510)
T ss_pred hhccceeeccCCCce
Confidence 999875 55654333
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.5e-21 Score=196.44 Aligned_cols=157 Identities=24% Similarity=0.442 Sum_probs=140.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEEecCCC-CCCcceEEEEEeCHHHHHHHHHhccC--CcccCCcCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCG 223 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~~d~~t-g~~~G~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~ 223 (650)
...++|||+|||.++++++|.+.|++.++ |++|.|...+.+ .+++|||||+|.+...|..|..+|-. ..|.|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 37789999999999999999999999985 888888877543 68999999999999999999988643 357799999
Q ss_pred CCCCCC-----------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHH
Q 006327 224 TAPSED-----------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292 (650)
Q Consensus 224 v~~~~~-----------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~ 292 (650)
|.|+++ -..|||+||+.++|++.|+++|++||. |+.|+.++| ||||.|...++|.+||
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~--veRVkk~rD---------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK--VERVKKPRD---------YAFVHFAEREDAVKAM 310 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc--eEEeecccc---------eeEEeecchHHHHHHH
Confidence 998875 367999999999999999999999998 999998865 9999999999999999
Q ss_pred HHhCCCCeeeCCCCcceeecccCCCCC
Q 006327 293 KRLQKPDVVFGHPERTVKVAFAEPLRE 319 (650)
Q Consensus 293 ~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (650)
+.+|+.++ .+..|.|.+|+|..+
T Consensus 311 ~~~ngkel----dG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 311 KETNGKEL----DGSPIEVTLAKPVDK 333 (506)
T ss_pred HHhcCcee----cCceEEEEecCChhh
Confidence 99999999 699999999998644
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=2.1e-21 Score=198.34 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=176.9
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
+......|.+++|||.+|+++|.+||+.|+ |+.+.+.+ .+|+..|-|||+|.+.+++++||++ +...+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 344567899999999999999999999995 77766654 5799999999999999999999985 5556666666553
Q ss_pred CC-----------------CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEE-EEEeccccccCCCcceEEEEecCHHH
Q 006327 226 PS-----------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVD 287 (650)
Q Consensus 226 ~~-----------------~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~-i~i~~d~~~~g~srG~aFV~F~~~e~ 287 (650)
.+ .....|.|.+||+.||+++|.++|...-. +.. |.++.+ ..+++.|-|||+|++.+.
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~gi~l~~d--~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPDGILLPMD--QRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc--cccceeeecc--CCCCcccceEEEecCHHH
Confidence 32 13456889999999999999999998764 444 455555 378899999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCcceeeccc-----------------------------------CCCC--------------
Q 006327 288 AMAAYKRLQKPDVVFGHPERTVKVAFA-----------------------------------EPLR-------------- 318 (650)
Q Consensus 288 A~~A~~~l~~~~~~~g~~~~~l~v~~a-----------------------------------~~~~-------------- 318 (650)
|++||.......- .+-|.|..+ ....
T Consensus 158 ae~Al~rhre~iG-----hRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g 232 (510)
T KOG4211|consen 158 AEIALGRHRENIG-----HRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEG 232 (510)
T ss_pred HHHHHHHHHHhhc-----cceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCC
Confidence 9999975332110 011111000 0000
Q ss_pred ---------------------------CCC--c---------cccc-cceeeeecCCCCCCCHHHHHHHhcccCCeeEEE
Q 006327 319 ---------------------------EPD--P---------EIMA-HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359 (650)
Q Consensus 319 ---------------------------~~~--~---------~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~ 359 (650)
... + .... ....+..++||+..++.+|.++|+..-.+ .|.
T Consensus 233 ~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~ 311 (510)
T KOG4211|consen 233 YYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVH 311 (510)
T ss_pred ccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEE
Confidence 000 0 0000 12678999999999999999999986444 555
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 360 i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
|-.. .+++..|-|+|+|.|+++|..|+. -++..+..+-|.+.+
T Consensus 312 i~ig-~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 312 IEIG-PDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFL 354 (510)
T ss_pred EEeC-CCCccCCcceeecccchhhHhhhc-cCCcccCcceeeecc
Confidence 5544 468899999999999999999986 467777777655543
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.9e-22 Score=189.07 Aligned_cols=167 Identities=22% Similarity=0.396 Sum_probs=152.2
Q ss_pred CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 227 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
...+++|.|.-||..+|+++|+.+|...|+ |+.|++++| +.+|++-||+||.|.++++|++|+..||+..+ +.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGe--iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL----Q~ 110 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGE--IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL----QN 110 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccc--eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee----cc
Confidence 345788999999999999999999999999 999999999 47999999999999999999999999999998 68
Q ss_pred cceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
++|+|+++.|....- ....|||.+||..+|..+|.++|++||.|+.-+|+.|..|+.++|.|||.|....+|+.|
T Consensus 111 KTIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 111 KTIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred ceEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 999999999865432 347899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEe
Q 006327 387 INAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~ 405 (650)
|..|||..-.|..-.|.++
T Consensus 186 Ik~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred HHhccCCCCCCCCCCeEEE
Confidence 9999999988865444443
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=3.5e-21 Score=215.04 Aligned_cols=170 Identities=20% Similarity=0.365 Sum_probs=137.0
Q ss_pred CCCCCCcceeCCcCCCccHHHHHHHHhhcCC----------cceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHh
Q 006327 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGV----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (650)
Q Consensus 226 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~----------~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l 295 (650)
.....++|||+|||+.+|+++|+++|.+++. ..|..+.+ .+.+|||||+|.+.++|..|| +|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 3445789999999999999999999998621 01333333 345799999999999999999 48
Q ss_pred CCCCeeeCCCCcceeecccCCCCC----------CC--------------ccccccceeeeecCCCCCCCHHHHHHHhcc
Q 006327 296 QKPDVVFGHPERTVKVAFAEPLRE----------PD--------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (650)
Q Consensus 296 ~~~~~~~g~~~~~l~v~~a~~~~~----------~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 351 (650)
++..+ .++.|+|........ .. .......++|||+|||..+|+++|+++|++
T Consensus 243 ~g~~~----~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 243 DSIIY----SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred CCeEe----eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 98776 367777764321110 00 001223578999999999999999999999
Q ss_pred cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 352 ~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 319 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 319 FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 99999999999999999999999999999999999999999999999998887654
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=3.2e-21 Score=204.78 Aligned_cols=163 Identities=17% Similarity=0.290 Sum_probs=125.8
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
+.|+|+|||..+..++|..+|..||. |..+.+... | .-++|.|....+|.+|+..|..+.+. ..++.
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~--i~rvllp~~----G---~~aiv~fl~p~eAr~Afrklaysr~k----~~ply 452 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGE--IGRVLLPPG----G---TGAIVEFLNPLEARKAFRKLAYSRFK----SAPLY 452 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccc--cceeecCcc----c---ceeeeeecCccchHHHHHHhchhhhc----cCccc
Confidence 56889999999999999999999998 888854321 1 23899999999999999998876652 33333
Q ss_pred ecccCC-------C----------C-------C-----------CC-----c-----cccccceeeeecCCCCCCCHHHH
Q 006327 311 VAFAEP-------L----------R-------E-----------PD-----P-----EIMAHVKTVFLDGVPPHWKENQI 345 (650)
Q Consensus 311 v~~a~~-------~----------~-------~-----------~~-----~-----~~~~~~~~l~V~nLp~~~t~~~l 345 (650)
+.|+.. . . . .. + ......++|||.||++.+|.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 333310 0 0 0 00 0 00011234999999999999999
Q ss_pred HHHhcccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 346 RDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 346 ~~~F~~~G~i~~v~i~~~~~~---~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..+|.+.|.|..|.|...+.. -.+.|||||+|.+.++|++|++.|+|+.|.|+.|.|.+..
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999999999988765422 1255999999999999999999999999999999998875
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=8.2e-22 Score=176.22 Aligned_cols=164 Identities=21% Similarity=0.412 Sum_probs=148.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
...||||+||+..+|++-|.++|-+.|+|+.++|.+++.+...+|||||+|.+.|+|+=|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999889999999986654
Q ss_pred -------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCee
Q 006327 229 -------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301 (650)
Q Consensus 229 -------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~ 301 (650)
...+|||+||.+.+++..|...|+.||. .+..-++++++ .++.+++|+||.|.+.+.+.+|+..+++.-+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd~-~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRDP-DTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCcccccc-cCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2568999999999999999999999996 23445788885 4899999999999999999999999999887
Q ss_pred eCCCCcceeecccCCCC
Q 006327 302 FGHPERTVKVAFAEPLR 318 (650)
Q Consensus 302 ~g~~~~~l~v~~a~~~~ 318 (650)
..++++|.++..+.
T Consensus 165 ---~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 ---CNRPITVSYAFKKD 178 (203)
T ss_pred ---cCCceEEEEEEecC
Confidence 58889998886543
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=2.4e-21 Score=173.21 Aligned_cols=169 Identities=23% Similarity=0.376 Sum_probs=151.0
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
....+|||+||+..++++.|+++|-+.|. |.++.+.++. .+...+|||||+|.+.++|.-|++-||...+. ++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDr-v~~~~qGygF~Ef~~eedadYAikiln~VkLY----gr 79 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDR-VTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GR 79 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhh-hcccccceeEEEEechhhhHHHHHHHHHHHhc----Cc
Confidence 45679999999999999999999999999 9999999984 57789999999999999999999999977774 89
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
+|+|..+...+.. ...+.+|||+||.+.+++..|.+.|+.||.|.. -.|+++..||.++|||||.|.+.+.+.+|
T Consensus 80 pIrv~kas~~~~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 80 PIRVNKASAHQKN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred eeEEEeccccccc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 9999988733222 224489999999999999999999999998865 47899999999999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEeec
Q 006327 387 INAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~ 407 (650)
|..|||..+..+.++|.++..
T Consensus 156 i~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHhccchhcCCceEEEEEEe
Confidence 999999999999999998754
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=186.18 Aligned_cols=151 Identities=22% Similarity=0.422 Sum_probs=138.6
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
-+|||+|||..+++.+|+.+|++||. |.+|.|+++ |+||..++...|+.|+..|++-.+ .+..|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk--VlECDIvKN---------YgFVHiEdktaaedairNLhgYtL----hg~nIn 67 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK--VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTL----HGVNIN 67 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc--eEeeeeecc---------cceEEeecccccHHHHhhccccee----cceEEE
Confidence 37999999999999999999999999 999999985 999999999999999999999998 588899
Q ss_pred ecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006327 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (650)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (650)
|.-++.+. ..+++|+|+||.+.|+.++|+..|++||.|++|+|+++ ++||.|.-.++|..||+.|
T Consensus 68 VeaSksKs-------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 68 VEASKSKS-------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred EEeccccC-------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 88877652 24589999999999999999999999999999999866 9999999999999999999
Q ss_pred CCCeeCCCeeEEEEeeccCCC
Q 006327 391 NNKEFSDGNSKVKLRARLSNP 411 (650)
Q Consensus 391 ng~~~~g~~i~v~~~~~~~~~ 411 (650)
||++|.|+.++|.+.....++
T Consensus 133 ~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccccceeeeeeecccccc
Confidence 999999999999998765443
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.8e-21 Score=181.85 Aligned_cols=183 Identities=23% Similarity=0.421 Sum_probs=156.4
Q ss_pred CcCCCCCCC------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHH
Q 006327 220 KRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (650)
Q Consensus 220 ~~i~v~~~~------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~ 293 (650)
+.|.|+++. +.++|||+.|.+.-.+++++.+|..||. |++|.+++.+ .+.+|||+||.|.++.+|..||.
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~--~~e~tvlrg~--dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGN--IEECTVLRGP--DGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCC--cceeEEecCC--CCCCCCceEEEeccchHHHHHHH
Confidence 455665553 4689999999999999999999999999 9999999985 89999999999999999999999
Q ss_pred HhCCCCeeeCCCCcceeecccCCCCC------------------------------------------------------
Q 006327 294 RLQKPDVVFGHPERTVKVAFAEPLRE------------------------------------------------------ 319 (650)
Q Consensus 294 ~l~~~~~~~g~~~~~l~v~~a~~~~~------------------------------------------------------ 319 (650)
.|+++..+-|. ...|.|+|++..++
T Consensus 79 aLHgSqTmpGA-SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 79 ALHGSQTMPGA-SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HhcccccCCCC-ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 99999988775 56677777600000
Q ss_pred -----------------------------------------------------------------------------C--
Q 006327 320 -----------------------------------------------------------------------------P-- 320 (650)
Q Consensus 320 -----------------------------------------------------------------------------~-- 320 (650)
.
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 0
Q ss_pred ----------------------------------------CccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEE
Q 006327 321 ----------------------------------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (650)
Q Consensus 321 ----------------------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 360 (650)
........++|||-.||.+..+.+|.+.|-.||.|+..+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 0000112489999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 361 ~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
+.|+.|+.+++|+||.|.++.+|+.||.+|||..|+-++|+|.++..
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 99999999999999999999999999999999999999998887643
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=2.2e-21 Score=185.22 Aligned_cols=158 Identities=29% Similarity=0.523 Sum_probs=143.9
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC-
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (650)
..|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..+++..|..|+..|++-.|.|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999977 999999999999999999999999999999977654
Q ss_pred ---CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 230 ---NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 230 ---~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
.++|+|+||.+.+|.++|+..|+++|. |.+|.|+++ |+||.|...++|..|++.|++.++ ++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp--viecdivkd---------y~fvh~d~~eda~~air~l~~~~~----~g 139 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP--VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNTEF----QG 139 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC--ceeeeeecc---------eeEEEEeeccchHHHHhccccccc----cc
Confidence 589999999999999999999999999 999999885 999999999999999999999999 69
Q ss_pred cceeecccCCCCCCCccccccceee
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTV 331 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l 331 (650)
+.+.|+++.......+....+..+.
T Consensus 140 k~m~vq~stsrlrtapgmgDq~~cy 164 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAPGMGDQSGCY 164 (346)
T ss_pred ceeeeeeeccccccCCCCCCHHHhe
Confidence 9999999988776666554444333
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=9.5e-20 Score=183.56 Aligned_cols=230 Identities=22% Similarity=0.333 Sum_probs=177.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
+.++|||++|++++|++.|+++|.+||+|.+|.+++++.+++++||+||+|.+.+.+.++|.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 689999999999999999999999999999999999999999999999999999999999974 5667888888776553
Q ss_pred C------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhC
Q 006327 229 D------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (650)
Q Consensus 229 ~------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~ 296 (650)
. ..+|||++||..+++++++++|+++|. |..+.++.+. .+.+++||+||.|.+.+.+.+++. +.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~--v~~~~~~~d~-~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK--VADVVIMYDK-TTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce--eEeeEEeecc-cccccccceeeEeccccccceecc-cc
Confidence 3 348999999999999999999999997 9999999984 588999999999999999999875 23
Q ss_pred CCCeeeCCCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEe-ecCC--CC--Cccc
Q 006327 297 KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNMS--TA--KRKD 371 (650)
Q Consensus 297 ~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~~~~--~~--~~~G 371 (650)
-+.+ .++.+.|..|.|+....+............++....+--.|..+|.-|+.+.....- .... -+ ...|
T Consensus 160 f~~~----~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 235 (311)
T KOG4205|consen 160 FHDF----NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGG 235 (311)
T ss_pred eeee----cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccCCC
Confidence 3444 488999999988776655443333444444566666666677788877766411110 0000 00 2355
Q ss_pred EEEEEeCCHHHHHHHH
Q 006327 372 YGFIDFSTHEAAVACI 387 (650)
Q Consensus 372 ~afV~F~~~~~A~~Ai 387 (650)
.+|..|.+......+.
T Consensus 236 ~g~~~~~~~~~~~~~~ 251 (311)
T KOG4205|consen 236 SGYPEFGNSGLGFGYG 251 (311)
T ss_pred ccccccCccccccccc
Confidence 6666666555444443
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=3.2e-18 Score=172.49 Aligned_cols=171 Identities=22% Similarity=0.412 Sum_probs=144.4
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
..++|||++|++.++++.|+.+|.++|+ |.+|.+|+++. ++++++|+||+|++.+...+++..... .+ .++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge--v~d~~vm~d~~-t~rsrgFgfv~f~~~~~v~~vl~~~~h-~~----dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE--VTDCVVMRDPS-TGRSRGFGFVTFATPEGVDAVLNARTH-KL----DGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc--eeeEEEeccCC-CCCcccccceecCCCcchheeeccccc-cc----CCcc
Confidence 5689999999999999999999999999 99999999975 799999999999999998888764322 22 3677
Q ss_pred eeecccCCCCCCCc-cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 309 VKVAFAEPLREPDP-EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 309 l~v~~a~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
|.+..+.+...... ......++|||++||..+++++|+++|.+||.|..+.++.|..+.+++||+||+|.+.+.+.+++
T Consensus 77 ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 77777666543222 22235789999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhCCCeeCCCeeEEEEeecc
Q 006327 388 NAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 388 ~~lng~~~~g~~i~v~~~~~~ 408 (650)
. ..-+.|+++.+.|..++..
T Consensus 157 ~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 157 L-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred c-cceeeecCceeeEeeccch
Confidence 5 6778899988766655443
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.3e-19 Score=175.67 Aligned_cols=172 Identities=22% Similarity=0.423 Sum_probs=151.6
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
++|||+.|.+++.++.|+..|..||. |+.|.+-.|+ -+++++|||||+|+-.+.|..|++.||+..+ .++.|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP--IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml----GGRNiK 186 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNIK 186 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC--cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccccc----cCcccc
Confidence 58999999999999999999999999 9999999996 5999999999999999999999999999887 589999
Q ss_pred ecccCCCCCCCc------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006327 311 VAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (650)
Q Consensus 311 v~~a~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 384 (650)
|.......+..+ +....-++|||..+..+++++||+.+|+.||.|..|.+.+...++..+||+||+|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 885443322222 11224579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeCCCeeEEEEeeccC
Q 006327 385 ACINAINNKEFSDGNSKVKLRARLS 409 (650)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~~~~~~~ 409 (650)
.||..||-..++|..|+|--.+...
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred HHhhhcchhhcccceEecccccCCC
Confidence 9999999999999988876555443
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=2.3e-17 Score=150.33 Aligned_cols=83 Identities=22% Similarity=0.438 Sum_probs=78.0
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 653
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=1e-17 Score=173.98 Aligned_cols=176 Identities=18% Similarity=0.328 Sum_probs=149.5
Q ss_pred CCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006327 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (650)
Q Consensus 226 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~ 305 (650)
.....+++|+-.|...++..+|.++|+.+|. |..|.|+.+ +.+++++|.+||+|.+.+....|+ .|.|..++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gk--VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---- 246 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGK--VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---- 246 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcC--cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc----
Confidence 3345788999999999999999999999999 999999999 468899999999999999999998 58888775
Q ss_pred CcceeecccCCCCCCCc---------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEE
Q 006327 306 ERTVKVAFAEPLREPDP---------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (650)
Q Consensus 306 ~~~l~v~~a~~~~~~~~---------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~ 376 (650)
+.+|.|+.....+.... ....+..+|+|+||.+++++++|+.+|+.||.|..|.++++..||.++|||||+
T Consensus 247 g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 247 GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred CceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 77887776543222110 111123349999999999999999999999999999999999899999999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCCeeEEEEeeccC
Q 006327 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARLS 409 (650)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~ 409 (650)
|.+.++|.+|++.|||.+|.|+.|+|.+.....
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999999999999999999999988765543
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.7e-16 Score=139.96 Aligned_cols=164 Identities=21% Similarity=0.342 Sum_probs=136.5
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...++|||+|||.++.+.+|+.+|-+||. |..|.|... ...-.||||+|++..+|+.||..-++..+ .+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdy----dg~ 73 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDY----DGC 73 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccC----CCCCCeeEEEecCccchhhhhhccccccc----Ccc
Confidence 35689999999999999999999999999 999998654 23458999999999999999999999888 699
Q ss_pred ceeecccCCCCCC---------------------CccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC
Q 006327 308 TVKVAFAEPLREP---------------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (650)
Q Consensus 308 ~l~v~~a~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 366 (650)
.|+|.|+...... .+.......+|.|.+||.+.+|+||+++..+.|.|-...|.+|
T Consensus 74 rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--- 150 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--- 150 (241)
T ss_pred eEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---
Confidence 9999998644211 1122234578999999999999999999999999999999776
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 367 ~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
|.+.|+|...++.+-||.+|+.+.+..-...+-+.+..
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 48999999999999999999988887655555444443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=4.1e-16 Score=155.71 Aligned_cols=246 Identities=19% Similarity=0.284 Sum_probs=184.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc--CCcccCCcCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTA 225 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~v~ 225 (650)
..++.|.|+|||+++||++|.+++..||.|+.+.+.+. +.-|||+|.+.++|...+.... ...|.+..|-|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 37899999999999999999999999999999988655 3379999999999987221100 001111111110
Q ss_pred ------------------------------------C-------C-CCC--CcceeCCcCCCccHHHHHHHHhhcCCcce
Q 006327 226 ------------------------------------P-------S-EDN--DTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (650)
Q Consensus 226 ------------------------------------~-------~-~~~--~~l~v~nLp~~~te~~l~~~F~~~G~~~i 259 (650)
. . .++ -.++|.++-..++-+-|.++|+.||. |
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~--V 177 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF--V 177 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce--e
Confidence 0 0 001 13567899999999999999999998 8
Q ss_pred EEEEEeccccccCCCcce-EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCC------------------CC
Q 006327 260 ENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR------------------EP 320 (650)
Q Consensus 260 ~~i~i~~d~~~~g~srG~-aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~------------------~~ 320 (650)
..|.-+.. +.+| |+|+|.+...|..|...|.+..+..| -++|++.|++-.. ..
T Consensus 178 lKIiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyng--cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 178 LKIITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNG--CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred EEEEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCc--eeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 77765543 2233 88999999999999999999998766 4677776662100 00
Q ss_pred C--------------------------------------cccccc--ceeeeecCCCC-CCCHHHHHHHhcccCCeeEEE
Q 006327 321 D--------------------------------------PEIMAH--VKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIV 359 (650)
Q Consensus 321 ~--------------------------------------~~~~~~--~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~ 359 (650)
. ...... ...|.|.||.. .+|.+-|..+|.-||.|.+|+
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 000011 36788999977 599999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeeccCCCCCC
Q 006327 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414 (650)
Q Consensus 360 i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~~~~ 414 (650)
|++++. --|.|++.+...|+-|+..|+|..+.|+.|+|.+.+-..-..++
T Consensus 330 il~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 330 ILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred eeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 999853 36999999999999999999999999999999987665544444
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.2e-16 Score=165.44 Aligned_cols=244 Identities=18% Similarity=0.332 Sum_probs=186.1
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhcc-----------C-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERI-----------G-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~-----------G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
......++|++||+.++++.+..+|..- | .|..|.|. ..+.||||+|.+.+.|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccc
Confidence 3356789999999999999999999764 2 35666663 457899999999999999997 566
Q ss_pred CcccCCcCCCCC-----------------------------CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEe
Q 006327 215 PVICGKRCGTAP-----------------------------SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265 (650)
Q Consensus 215 ~~l~g~~i~v~~-----------------------------~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~ 265 (650)
..+.|..+.+.. .....++||++||..+++.++++++..+|. +....++
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~--lk~f~lv 322 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP--LKAFRLV 322 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc--chhheee
Confidence 666665443211 112568999999999999999999999999 9999999
Q ss_pred ccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCc-------------------cccc
Q 006327 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-------------------EIMA 326 (650)
Q Consensus 266 ~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~-------------------~~~~ 326 (650)
.+. .++.++||||.+|.+.-....|+..||+..+. .+.|.|+.+-+...... ....
T Consensus 323 ~d~-~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~ 397 (500)
T KOG0120|consen 323 KDS-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGI 397 (500)
T ss_pred ccc-ccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhhccchhccccCCccccccccchhhhcccCCC
Confidence 985 46899999999999999999999999999883 67777776643221110 0111
Q ss_pred cceeeeecCCCC--CCC--------HHHHHHHhcccCCeeEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 006327 327 HVKTVFLDGVPP--HWK--------ENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNK 393 (650)
Q Consensus 327 ~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~G~afV~F~~~~~A~~Ai~~lng~ 393 (650)
.+..|.+.|+=. ++. -++|+..|.+||.|..|.|++.. .-....|..||+|.+.+++++|+++|+|+
T Consensus 398 ~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 398 PTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred cchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 223344444311 111 15677788999999999998772 22345788999999999999999999999
Q ss_pred eeCCCeeEEEE
Q 006327 394 EFSDGNSKVKL 404 (650)
Q Consensus 394 ~~~g~~i~v~~ 404 (650)
.|.++.|.+.+
T Consensus 478 KF~nRtVvtsY 488 (500)
T KOG0120|consen 478 KFANRTVVASY 488 (500)
T ss_pred eeCCcEEEEEe
Confidence 99999987765
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.3e-16 Score=150.68 Aligned_cols=164 Identities=21% Similarity=0.406 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc-ccCC--cCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGK--RCGTA 225 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~-l~g~--~i~v~ 225 (650)
+.++|||+-|...-.|+|++.+|..||.|.+|.+.+. ..|.+||||||.|.+.-+|..||..|++.. +-|- .+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5689999999999999999999999999999999887 569999999999999999999999998642 1111 00000
Q ss_pred CC------------------------------------------------------------------------------
Q 006327 226 PS------------------------------------------------------------------------------ 227 (650)
Q Consensus 226 ~~------------------------------------------------------------------------------ 227 (650)
.+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 006327 228 -------------------------------------------------------------------------------- 227 (650)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (650)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------------------------CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEE
Q 006327 228 --------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281 (650)
Q Consensus 228 --------------------------~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~ 281 (650)
.+.++|||-.||.+.+..+|.+.|..||. |...+++.|. -++.+|.|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGh--ivSaKVFvDR-ATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGH--IVSAKVFVDR-ATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccc--eeeeeeeehh-ccccccceeeEe
Confidence 00578999999999999999999999999 9999998884 589999999999
Q ss_pred ecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCC
Q 006327 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (650)
Q Consensus 282 F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~ 320 (650)
|.+..+|..||..||+-.| .-+.|+|.+..|+...
T Consensus 334 fDNp~SaQaAIqAMNGFQI----GMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQI----GMKRLKVQLKRPKDAN 368 (371)
T ss_pred cCCchhHHHHHHHhcchhh----hhhhhhhhhcCccccC
Confidence 9999999999999999988 4788999888876543
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.64 E-value=1.5e-14 Score=142.86 Aligned_cols=243 Identities=20% Similarity=0.227 Sum_probs=192.9
Q ss_pred hhccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc--cCCcccCCc
Q 006327 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKR 221 (650)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l--~~~~l~g~~ 221 (650)
..+...+-.|.|++|-..+++.+|.+.++.||+|..|.++.. +..|.|+|++.+.|..|+.-. +...+.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCch
Confidence 345567889999999999999999999999999999988644 567999999999999998632 333444544
Q ss_pred CCCCC-------------CCCCCccee--CCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHH
Q 006327 222 CGTAP-------------SEDNDTLFV--GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (650)
Q Consensus 222 i~v~~-------------~~~~~~l~v--~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e 286 (650)
..+.. +..+..|.+ -|--..+|.+-|.++...+|. |..|.|++. ++ -.|.|+|.+.+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk--VlRIvIfkk---ng---VQAmVEFdsv~ 170 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK--VLRIVIFKK---NG---VQAMVEFDSVE 170 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc--eEEEEEEec---cc---eeeEEeechhH
Confidence 33221 222333443 455566999999999999998 999999875 22 35899999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeecccCCCCC-----------------------------------------------
Q 006327 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE----------------------------------------------- 319 (650)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~----------------------------------------------- 319 (650)
.|++|..+||+.+|..| -.+|+|.+|+|.+.
T Consensus 171 ~AqrAk~alNGADIYsG--CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~ 248 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSG--CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGG 248 (494)
T ss_pred HHHHHHhhccccccccc--ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCC
Confidence 99999999999999887 47888888854321
Q ss_pred ------------------------------CCccccccceeeeecCCCC-CCCHHHHHHHhcccCCeeEEEEeecCCCCC
Q 006327 320 ------------------------------PDPEIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (650)
Q Consensus 320 ------------------------------~~~~~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 368 (650)
..+....+...+.|-+|.. .+.-+.|..+|..||.|..|++++.+
T Consensus 249 h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---- 324 (494)
T KOG1456|consen 249 HSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---- 324 (494)
T ss_pred CCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----
Confidence 0001122346889999987 57789999999999999999999874
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 369 ~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.|.|.|++.+..+.++||.-||+..+.|..|.|.+.+.
T Consensus 325 -~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 325 -PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred -cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 57899999999999999999999999999988887654
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=1.9e-14 Score=147.85 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=124.3
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
-.|.+.+|||++|+++|.++|+.++ |+++.+.+. +|+..|-|||+|.+.+++++|++.-... + ..+-|.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~-m----g~RYIE 79 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRES-M----GHRYIE 79 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHH-h----CCceEE
Confidence 3466899999999999999999998 888888775 7999999999999999999999843322 1 245555
Q ss_pred ecccCCCC------CCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006327 311 VAFAEPLR------EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (650)
Q Consensus 311 v~~a~~~~------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 384 (650)
|-.+.... ...+........|.+++||+.||++||.+||+..-.|....++.....+++.|-|||+|++.+.|+
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 55443221 111112235578999999999999999999999866666343333356779999999999999999
Q ss_pred HHHHHhCCCeeCCCeeEEEE
Q 006327 385 ACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~~ 404 (650)
.||.. |...|+.+-|.|.-
T Consensus 160 ~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 160 IALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred HHHHH-HHHhhccceEEeeh
Confidence 99974 66678887777754
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=135.17 Aligned_cols=140 Identities=19% Similarity=0.314 Sum_probs=123.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..+++|||+|||.++.+.+|.++|-+||.|..|.|..- -..-.||||+|++..+|+.||..-++-.+.|..|+|..+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46799999999999999999999999999999999432 345689999999999999999988888899998888655
Q ss_pred CC--------------------------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCc
Q 006327 228 ED--------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 275 (650)
Q Consensus 228 ~~--------------------------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~sr 275 (650)
.. ...|.|.+||.+.++++|+.+..+.|. |--..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd--vCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD--VCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC--eeeeeeecc--------
Confidence 32 346899999999999999999999998 777778777
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 276 GFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 276 G~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
|.+.|+|...++.+-|+..|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 6899999999999999998887655
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.62 E-value=2.8e-14 Score=142.75 Aligned_cols=236 Identities=17% Similarity=0.271 Sum_probs=184.2
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC--C----
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG--T---- 224 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~--v---- 224 (650)
-.++|.|+-+.+|-+=|..+|++||.|..|.-+.. .+.=-|.|+|.+.+.|..|..+|++.-|-.-.|. +
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 46789999999999999999999999987766532 2233499999999999999999988766432221 0
Q ss_pred ------C--------------CCC---------------------------------------------CCCcceeCCcC
Q 006327 225 ------A--------------PSE---------------------------------------------DNDTLFVGNIC 239 (650)
Q Consensus 225 ------~--------------~~~---------------------------------------------~~~~l~v~nLp 239 (650)
+ +.. .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 000 03556777876
Q ss_pred CC-ccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCC
Q 006327 240 NT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (650)
Q Consensus 240 ~~-~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~ 318 (650)
.. +|.+.|..+|.-||. |..|+|+.+. +-.|+|++.+...|.-|+..|++..+. ++.|+|.+++...
T Consensus 307 ~~~VT~d~LftlFgvYGd--VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD--VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKHTN 374 (492)
T ss_pred hhccchhHHHHHHhhhcc--eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec----CceEEEeeccCcc
Confidence 54 899999999999999 9999999873 357999999999999999999999985 7999998885321
Q ss_pred CCC------------------------------ccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCC
Q 006327 319 EPD------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (650)
Q Consensus 319 ~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 368 (650)
... .....++.+|.+.|+|..+++++|+..|...|-........ ++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~k 450 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QK 450 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CC
Confidence 100 01223467899999999999999999999988665544432 23
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeeCCC-eeEEEEee
Q 006327 369 RKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRA 406 (650)
Q Consensus 369 ~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~v~~~~ 406 (650)
.+-+|.+.+++.++|..|+..++++.++.. .++|.|.+
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 455899999999999999999999998866 77787764
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.61 E-value=3.3e-14 Score=133.16 Aligned_cols=207 Identities=17% Similarity=0.321 Sum_probs=145.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHH----HHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRK----VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~----~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...||||.||+..+..++|+. +|++||.|.+|..++ |.+.+|-|||.|.+.+.|..|+.+|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455999999999999999888 999999999998864 5789999999999999999999999999999999999
Q ss_pred CCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006327 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (650)
Q Consensus 225 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~ 304 (650)
..+.....++..--+.-+..+ -. +....+....+ .....|..+. ++...+
T Consensus 85 qyA~s~sdii~~~~~~~v~~~---------~k--~~~~~~~~~~~-~~~~ng~~~~--------------~~~~~~---- 134 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKE---------KK--INGEILARIKQ-PLDTNGHFYN--------------MNRMNL---- 134 (221)
T ss_pred ecccCccchhhccCceecccc---------Cc--cccccccccCC-cccccccccc--------------cccccC----
Confidence 998876665433111000000 00 00000100000 0000000000 111110
Q ss_pred CCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006327 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (650)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 384 (650)
.. +. . .....+...||+.|||..++.+.|..+|.+|.-...|+++.. ..+.|||+|.+...|.
T Consensus 135 -----p~----p~--~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~ 197 (221)
T KOG4206|consen 135 -----PP----PF--L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQAS 197 (221)
T ss_pred -----CC----Cc--c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhH
Confidence 00 00 0 112335689999999999999999999999999999998876 3679999999999999
Q ss_pred HHHHHhCCCeeC-CCeeEEEEe
Q 006327 385 ACINAINNKEFS-DGNSKVKLR 405 (650)
Q Consensus 385 ~Ai~~lng~~~~-g~~i~v~~~ 405 (650)
.|...|.+..|. .+.+.|.++
T Consensus 198 ~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 198 AAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHhhhhccceeccCceEEeccc
Confidence 999999998887 666655543
No 54
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=7.3e-15 Score=145.46 Aligned_cols=251 Identities=18% Similarity=0.218 Sum_probs=180.3
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...+....|..++||+..++.+|..+|+..-.+.-.+.+.....++..|.|.|.|.+.|.-..|++. +...+.++.|.|
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryiev 133 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEV 133 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceee
Confidence 3445667888999999999999999998764443333333345688889999999999999999986 555666666654
Q ss_pred CCCC----------------------CCCcceeCCcCCCccHHHHHHHHhhcCC--cceEEEEEeccccccCCCcceEEE
Q 006327 225 APSE----------------------DNDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAFV 280 (650)
Q Consensus 225 ~~~~----------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~--~~i~~i~i~~d~~~~g~srG~aFV 280 (650)
-.+. +.-.|.+.+||+++|..+|.++|...-. ...+.|.++..+ +|+..|-|||
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp--dgrpTGdAFv 211 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP--DGRPTGDAFV 211 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC--CCCcccceEE
Confidence 2221 1234557899999999999999973321 125566666654 7899999999
Q ss_pred EecCHHHHHHHHHHhCCCCeeeCCCCcceeeccc----------------------CCCCCCCc----cccccceeeeec
Q 006327 281 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA----------------------EPLREPDP----EIMAHVKTVFLD 334 (650)
Q Consensus 281 ~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a----------------------~~~~~~~~----~~~~~~~~l~V~ 334 (650)
.|.+.++|..|+..-.... | .|-|.+-.+ .+.....+ .......+|.++
T Consensus 212 lfa~ee~aq~aL~khrq~i---G--qRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLR 286 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQNI---G--QRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLR 286 (508)
T ss_pred EecCHHHHHHHHHHHHHHH---h--HHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEec
Confidence 9999999999997533211 0 122222111 11111001 111225689999
Q ss_pred CCCCCCCHHHHHHHhcccCC-eeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 335 GVPPHWKENQIRDQIKGYGD-VIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 335 nLp~~~t~~~l~~~F~~~G~-i~~--v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
+||+..+.++|-+||..|.. |.. |.++.+ ..|++.|-|||+|.+.+.|.+|..+.+++.+..+.|.|.-
T Consensus 287 GLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 287 GLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 99999999999999998864 333 666666 4588999999999999999999999999888888877653
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=2.6e-15 Score=136.89 Aligned_cols=81 Identities=27% Similarity=0.604 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+++|+++|+++|++||.|+.|.|+.++.|++++|||||+|.+.++|++||+.|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 3
No 56
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.7e-13 Score=122.39 Aligned_cols=74 Identities=16% Similarity=0.392 Sum_probs=69.7
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.++|||+||+..+++.+|..+|..||.|..|+|.++ +.|||||+|+++.+|..|+..|+|+.|.|..|.|++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 479999999999999999999999999999999886 57899999999999999999999999999999998763
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=1.1e-13 Score=135.99 Aligned_cols=199 Identities=19% Similarity=0.319 Sum_probs=140.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~--------~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
.-...|||.|||.++|-+++.++|++||.|. .|+|.++ ..|+.+|-|.|+|-..+++..|++.|+...|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999873 3888888 459999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCC
Q 006327 220 KRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (650)
Q Consensus 220 ~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~ 299 (650)
+.|+|..+. |+.-|.-.+ +++.++- ...-.+.. .++...
T Consensus 211 ~~~rVerAk----------------------fq~Kge~~~-----------~~k~k~k-------~~~~kk~~-k~q~k~ 249 (382)
T KOG1548|consen 211 KKLRVERAK----------------------FQMKGEYDA-----------SKKEKGK-------CKDKKKLK-KQQQKL 249 (382)
T ss_pred cEEEEehhh----------------------hhhccCcCc-----------ccccccc-------cccHHHHH-HHHHhh
Confidence 999887764 333332000 0000000 00111111 111111
Q ss_pred eeeCCCCcceeecccCCCCCCCccccccceeeeecCCCC----CCC-------HHHHHHHhcccCCeeEEEEeecCCCCC
Q 006327 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP----HWK-------ENQIRDQIKGYGDVIRIVLARNMSTAK 368 (650)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~l~~~F~~~G~i~~v~i~~~~~~~~ 368 (650)
+- -+ +.. ..+......++|.|+||=. ..+ .++|++-+.+||.|..|.|.-. .
T Consensus 250 ~d----w~--------pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----h 312 (382)
T KOG1548|consen 250 LD----WR--------PDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----H 312 (382)
T ss_pred cc----cC--------CCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----C
Confidence 10 00 000 1111222346888888732 222 3678888999999999988643 4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 369 ~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
+.|.+-|.|.+.++|..||+.|+|+.|.|+.|...+.
T Consensus 313 PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 313 PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 6889999999999999999999999999999887763
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.2e-14 Score=135.99 Aligned_cols=149 Identities=18% Similarity=0.337 Sum_probs=125.6
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
..+||++|+..+.+.+|..+|..+|. |..|.++. +|+||+|.+..+|..|+..|++.++. +..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~mk~---------gf~fv~fed~rda~Dav~~l~~~~l~----~e~~v 66 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDADMKN---------GFGFVEFEDPRDADDAVHDLDGKELC----GERLV 66 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccceeec---------ccceeccCchhhhhcccchhcCceec----ceeee
Confidence 36899999999999999999999998 77777754 79999999999999999999999884 44478
Q ss_pred ecccCCCCCCC---------------ccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEE
Q 006327 311 VAFAEPLREPD---------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (650)
Q Consensus 311 v~~a~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV 375 (650)
|.++...+... .....+.++|+|.+|+..+.|++|.++|.++|.++...+ .++++||
T Consensus 67 ve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v 138 (216)
T KOG0106|consen 67 VEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFV 138 (216)
T ss_pred eecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccce
Confidence 88876421110 111234578999999999999999999999999866555 3568999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 376 DFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+|++.++|.+||..|++..+.++.|.+
T Consensus 139 ~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 139 EFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999999888
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.7e-14 Score=131.19 Aligned_cols=87 Identities=21% Similarity=0.415 Sum_probs=78.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.-++|||++|+|.++.+.|+++|++||+|+++.|+.|+.|++++|||||+|.+.++|.+|++.. +-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3479999999999999999999999999999999999999999999999999999999998754 458999999999986
Q ss_pred ccCCCCCC
Q 006327 407 RLSNPMPK 414 (650)
Q Consensus 407 ~~~~~~~~ 414 (650)
.-.++++.
T Consensus 90 lg~~pR~~ 97 (247)
T KOG0149|consen 90 LGGKPRPV 97 (247)
T ss_pred hcCccCCC
Confidence 64555443
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.1e-13 Score=108.58 Aligned_cols=70 Identities=27% Similarity=0.604 Sum_probs=66.7
Q ss_pred eeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 331 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
|||+|||..+|+++|+++|++||.|..+.++.+ .++..+++|||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6788999999999999999999999999999998764
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.7e-13 Score=125.36 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=77.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
-...|.|.||.+.+|.++|+.+|++||.|-.|.|++|+.|..++|||||.|....+|+.|+++|+|.+|+|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.5e-13 Score=109.44 Aligned_cols=70 Identities=34% Similarity=0.743 Sum_probs=66.5
Q ss_pred EEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 153 lfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
|||+|||.++|+++|+++|++||.|..+.++.+ .++..+++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7789999999999999999999999999999988763
No 63
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-12 Score=126.71 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=78.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.+.++|||.-|+.++++..|+..|+.||.|+.|.|+++..||+++|||||+|++..+..+|.+..+|..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888875
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.43 E-value=2.5e-12 Score=129.66 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=137.6
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHh-hcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~-~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
...+.+||.|||+++.|++|+.+|. +.|+ |+.|.|+.| ..++++|||.|+|++.+.+++|++.||+.++ .+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGe--v~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~----~G 113 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGE--VEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV----NG 113 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCc--eEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc----cC
Confidence 3456699999999999999999996 4577 999999998 4899999999999999999999999999888 57
Q ss_pred cceeecccCCC----------------------------------------------------CCCCc------------
Q 006327 307 RTVKVAFAEPL----------------------------------------------------REPDP------------ 322 (650)
Q Consensus 307 ~~l~v~~a~~~----------------------------------------------------~~~~~------------ 322 (650)
++|.|.-..-. ....-
T Consensus 114 R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~ 193 (608)
T KOG4212|consen 114 RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSN 193 (608)
T ss_pred ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchh
Confidence 77777533000 00000
Q ss_pred ---------------c-ccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 323 ---------------E-IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 323 ---------------~-~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
. ......++||.||.+.+....|++.|.-.|.|..|.+-.++. +.++||+.|+|..+-.|..|
T Consensus 194 ~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqa 272 (608)
T KOG4212|consen 194 YNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQA 272 (608)
T ss_pred hhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHH
Confidence 0 001135889999999999999999999999999999988865 58999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEe
Q 006327 387 INAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~ 405 (650)
|..|++.-+..++..+.+.
T Consensus 273 Isml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 273 ISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred HHhhccCCCccccceeecc
Confidence 9999987777766666553
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3e-13 Score=126.85 Aligned_cols=77 Identities=36% Similarity=0.684 Sum_probs=70.6
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
-++|||++|+|.++.+.|+.+|++||+|+++.|+.|+.|+++|||+||+|.+.++|.+|++. -+.+|.||+..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999986 457899998765543
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.42 E-value=1.8e-12 Score=120.01 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=119.9
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
.-+||||.+||.++...+|..+|..|-- .+.+.|....+.....+-+|||+|.++..|.+|++.||+..+-.. ....
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~G--YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE-~~st 109 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHG--YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE-TGST 109 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCC--ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc-cCce
Confidence 4689999999999999999999998854 666666654333445668999999999999999999999876332 2455
Q ss_pred eeecccCCCC--CCC-----------------------------------------------------------------
Q 006327 309 VKVAFAEPLR--EPD----------------------------------------------------------------- 321 (650)
Q Consensus 309 l~v~~a~~~~--~~~----------------------------------------------------------------- 321 (650)
|.+.+++... ...
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 5555552110 000
Q ss_pred -c-------------cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 322 -P-------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 322 -~-------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
+ .......+|||-||..+|++++|+.+|+.|--...++|... ..-..|||+|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHH
Confidence 0 00001258999999999999999999999977666666321 23457999999999999999
Q ss_pred HHhCCCeeC
Q 006327 388 NAINNKEFS 396 (650)
Q Consensus 388 ~~lng~~~~ 396 (650)
..|.|..|.
T Consensus 266 ~~lqg~~~s 274 (284)
T KOG1457|consen 266 NHLQGNLLS 274 (284)
T ss_pred HHhhcceec
Confidence 999887665
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.6e-13 Score=124.87 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=76.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
-.++|.|.||+.++++.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||.-++.-.|.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999888888864
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.3e-13 Score=112.89 Aligned_cols=82 Identities=16% Similarity=0.348 Sum_probs=76.9
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
....++||||+||++-+||++|.++|+++|+|..|.+=.|+.+...-|||||+|.+.++|..||+-++++.|..+.|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 006327 226 PS 227 (650)
Q Consensus 226 ~~ 227 (650)
+.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 64
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.3e-13 Score=111.71 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=76.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+++|||+||++.++++.|.++|+++|.|..|.+-.|+.+..+-|||||+|-+.++|..||+.+||+.+..+.|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999874
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-12 Score=123.53 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..+.+|-|.||+.++++.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..||+.-+..--|.|.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 37889999999999999999999999999999999999999999999999999999999999999998777777777776
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
.+
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 54
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.37 E-value=5e-12 Score=117.05 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=112.2
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEe-cCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc---CCcCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK-NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCGT 224 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~-d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~---g~~i~v 224 (650)
.-+||||.+||.++...+|..+|..|--.+.+.|.. ++.....+-+|||.|.+...|..|+.+||+..+. +..+++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 468999999999999999999999987666666643 2333446689999999999999999999987653 222211
Q ss_pred CCCC----------------------------------------------------------------------------
Q 006327 225 APSE---------------------------------------------------------------------------- 228 (650)
Q Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (650)
..++
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 1000
Q ss_pred ----------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHH
Q 006327 229 ----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292 (650)
Q Consensus 229 ----------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~ 292 (650)
.-.+|||.||..++|+++|+.+|+.|-- ...++|... .....|||+|+..+.|..||
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g--f~~l~~~~~-----~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG--FHILKIRAR-----GGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC--ceEEEEecC-----CCcceEeecHHHHHHHHHHH
Confidence 0258999999999999999999999964 555555322 22357999999999999999
Q ss_pred HHhCCCCee
Q 006327 293 KRLQKPDVV 301 (650)
Q Consensus 293 ~~l~~~~~~ 301 (650)
..|++..+.
T Consensus 266 ~~lqg~~~s 274 (284)
T KOG1457|consen 266 NHLQGNLLS 274 (284)
T ss_pred HHhhcceec
Confidence 999987763
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.7e-12 Score=102.31 Aligned_cols=70 Identities=24% Similarity=0.566 Sum_probs=64.4
Q ss_pred eeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 331 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
|+|+|||+.+++++|+++|+.||.|..|.+..++. +..+|+|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999998763
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=1.4e-12 Score=103.97 Aligned_cols=69 Identities=41% Similarity=0.693 Sum_probs=63.6
Q ss_pred EEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 153 lfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
|||+|||+.+|+++|+++|+.||.|..|.+..++. +..+++|||+|.+.++|.+|++.+++..+.|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999876 8999999999999999999999988899998876
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=6.7e-14 Score=125.45 Aligned_cols=82 Identities=26% Similarity=0.502 Sum_probs=77.5
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
++-+.+..|||+|||+++||.||..+|++||+|++|.|++|+.||+++||||++|++..+...|+..||+..|.|+.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 006327 225 AP 226 (650)
Q Consensus 225 ~~ 226 (650)
..
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 54
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.3e-12 Score=125.91 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=75.8
Q ss_pred ccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 324 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
.....++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+. ..+||||||+|++.++|++|-++|||+.|.||.|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34456899999999999999999999999999999999885 4589999999999999999999999999999999998
Q ss_pred Eeecc
Q 006327 404 LRARL 408 (650)
Q Consensus 404 ~~~~~ 408 (650)
.+...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 77654
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4.7e-12 Score=123.39 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=71.2
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998853 57999999999999999995 999999999999998755
Q ss_pred cC
Q 006327 408 LS 409 (650)
Q Consensus 408 ~~ 409 (650)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.34 E-value=7.8e-11 Score=116.87 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=173.4
Q ss_pred CCEEEE--cCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc--CCCC
Q 006327 150 EHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR--CGTA 225 (650)
Q Consensus 150 ~~tlfV--~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~--i~v~ 225 (650)
...|.+ -|--+.+|-+-|..++...|+|..|.|++. + ---|.|+|.+.+.|++|.++||+..|..-- |+|.
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 344444 444468899999999999999999999864 2 337999999999999999999987764211 1111
Q ss_pred CCC-----------------------------------------------------------------------------
Q 006327 226 PSE----------------------------------------------------------------------------- 228 (650)
Q Consensus 226 ~~~----------------------------------------------------------------------------- 228 (650)
.++
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 000
Q ss_pred -----------CCCcceeCCcCCC-ccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhC
Q 006327 229 -----------DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (650)
Q Consensus 229 -----------~~~~l~v~nLp~~-~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~ 296 (650)
+.+.+.|-+|... +.-+.|-.+|=.||. |+.|++|+.. .|.|.|++.+....++|+..||
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN--V~rvkFmkTk------~gtamVemgd~~aver~v~hLn 346 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN--VERVKFMKTK------PGTAMVEMGDAYAVERAVTHLN 346 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc--eeeEEEeecc------cceeEEEcCcHHHHHHHHHHhc
Confidence 0234666777644 677889999999998 9999999874 3789999999999999999999
Q ss_pred CCCeeeCCCCcceeecccCCC--------------------------------CCCCccccccceeeeecCCCCCCCHHH
Q 006327 297 KPDVVFGHPERTVKVAFAEPL--------------------------------REPDPEIMAHVKTVFLDGVPPHWKENQ 344 (650)
Q Consensus 297 ~~~~~~g~~~~~l~v~~a~~~--------------------------------~~~~~~~~~~~~~l~V~nLp~~~t~~~ 344 (650)
+..++ +.+|.|.+++.. +........++++|..-|.|..+||+.
T Consensus 347 n~~lf----G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~ 422 (494)
T KOG1456|consen 347 NIPLF----GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQ 422 (494)
T ss_pred cCccc----cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHH
Confidence 99884 666766655321 111122334578999999999999999
Q ss_pred HHHHhcccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 345 IRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 345 l~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
|..+|...+. .+.|+|+.-+. . ..--+.++|++.++|..||..||...|.+.
T Consensus 423 l~~i~nek~v~~~svkvFp~ks-e-rSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 423 LIGICNEKDVPPTSVKVFPLKS-E-RSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred HHHHhhhcCCCcceEEeecccc-c-ccccceeeeehHHHHHHHHHHhccccccCC
Confidence 9999987654 35677765542 2 233589999999999999999999998875
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2e-12 Score=124.85 Aligned_cols=77 Identities=26% Similarity=0.520 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
.+-+||||.-|+++++|..|+..|+.||+|+.|+|+.++.||+++|||||+|.+..+...|.+..++.+|.|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999998743
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=1.6e-12 Score=118.99 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=77.7
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
.++....+|.|-||.+-+|.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|..+.+|+.||++|++.+|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 006327 225 APS 227 (650)
Q Consensus 225 ~~~ 227 (650)
+.+
T Consensus 88 q~a 90 (256)
T KOG4207|consen 88 QMA 90 (256)
T ss_pred hhh
Confidence 554
No 80
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=4.5e-13 Score=120.22 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=79.2
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
+.-|||+|||+.+|+.||.-+|++||+|+.|.+++|..||+++||||++|++..+..-|+..|||..|.|+.|+|.-...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred cCCC
Q 006327 408 LSNP 411 (650)
Q Consensus 408 ~~~~ 411 (650)
+..|
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 6555
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=4e-12 Score=123.87 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=70.2
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+.+|+++|+++|+.||.|++|.|+.+. .++|||||+|.+.++|..||. |++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999874 357999999999999999996 999999999999987653
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.5e-12 Score=123.54 Aligned_cols=138 Identities=26% Similarity=0.481 Sum_probs=118.0
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC--
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (650)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++..|.+..+.|..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 4589999999999999999999999988875544332
Q ss_pred ------------------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecC
Q 006327 229 ------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284 (650)
Q Consensus 229 ------------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~ 284 (650)
..+.|+|.++...+.+++|..+|..+|. ++...+ ..+++||+|++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~---------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA---------RRNFAFVEFSE 142 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh---------hccccceeehh
Confidence 2456888999999999999999999997 544433 24799999999
Q ss_pred HHHHHHHHHHhCCCCeeeCCCCcceee
Q 006327 285 HVDAMAAYKRLQKPDVVFGHPERTVKV 311 (650)
Q Consensus 285 ~e~A~~A~~~l~~~~~~~g~~~~~l~v 311 (650)
.++|..|+..|++..+. ++.|++
T Consensus 143 ~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred hhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999883 666665
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=2.1e-11 Score=124.55 Aligned_cols=170 Identities=24% Similarity=0.440 Sum_probs=123.4
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+++|+++|.++|.+||.|..|.|..++.+++++|||||+|.+.++|..|+..+++..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999998877542
Q ss_pred --CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 230 --NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 230 --~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
.......++ . . +.. .. .
T Consensus 195 ~~~~~~~~~~~-------------------------~--~--------------------~~~-----~~---------~ 213 (306)
T COG0724 195 ASQPRSELSNN-------------------------L--D--------------------ASF-----AK---------K 213 (306)
T ss_pred ccccccccccc-------------------------c--c--------------------hhh-----hc---------c
Confidence 000000000 0 0 000 00 0
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
. .............+++.+++..++...+...|..+|.+..+.+...........+.++.+.....+..++
T Consensus 214 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 214 L---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred c---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 0 0001111223478899999999999999999999999977777666544444445555555555555544
Q ss_pred HH
Q 006327 388 NA 389 (650)
Q Consensus 388 ~~ 389 (650)
..
T Consensus 285 ~~ 286 (306)
T COG0724 285 SR 286 (306)
T ss_pred cc
Confidence 43
No 84
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=7.8e-12 Score=106.70 Aligned_cols=88 Identities=26% Similarity=0.378 Sum_probs=81.4
Q ss_pred CccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 321 DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 321 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
.|+.....+.|||.++...+|+++|.+.|..||.|++|.+-.|+.||-.+|||+|+|++.++|++||.+|||..|.|..|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecc
Q 006327 401 KVKLRARL 408 (650)
Q Consensus 401 ~v~~~~~~ 408 (650)
.|.|....
T Consensus 145 ~VDw~Fv~ 152 (170)
T KOG0130|consen 145 SVDWCFVK 152 (170)
T ss_pred eEEEEEec
Confidence 99987654
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4e-12 Score=113.80 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
-.++|||+||+..+|+.+|..+|..||+|..|+|-++ ..|||||+|++..+|..|+..|++..|+|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999999765 47999999999999999999999999999988765543
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=1.6e-11 Score=125.50 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=70.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH--EAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~--~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
...+|||+||++.+++++|+.+|..||.|..|.|+ +.|| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35799999999999999999999999999999999 4466 99999999987 789999999999999999999987
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 54
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=1.9e-11 Score=117.06 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
...||||+||++.+|+++|++||+.||+|.+|.|+++ +..++||||+|.+.++|..||. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999988 4556899999999999999996 99999999999887765
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=5.5e-11 Score=96.95 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=69.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
-...|||+|||+.+|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|++.|+|..+.++.+.|-+-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578999999999999999999999999999999776554 899999999999999999999999999999888764
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=4.8e-11 Score=94.69 Aligned_cols=71 Identities=23% Similarity=0.559 Sum_probs=66.2
Q ss_pred eeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 330 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|..|+..+++..|.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 678899999999999999999999999999988765
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=6.2e-11 Score=113.59 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=69.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
...+|||+||++.+|+++|++||+.||.|..|.|+++. ..++||||+|.+.++|..|| .|||..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999884 45689999999999999999 599999999998887654
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
.+
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=105.44 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=77.6
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+...+...|||.++...+|+++|.+.|..||+|+.|+|..++.||-.+|||+|+|.+.+.|++|+.+||+..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006327 225 APS 227 (650)
Q Consensus 225 ~~~ 227 (650)
.++
T Consensus 147 Dw~ 149 (170)
T KOG0130|consen 147 DWC 149 (170)
T ss_pred EEE
Confidence 663
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=4.7e-11 Score=94.74 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=65.8
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+|+|+|||..++.++|+++|.+||.|..+.++.+. +.++++|||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 778999999999999999999999998888887754
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.4e-11 Score=98.14 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...+.|||+|||+++|.+++.++|.+||.|..|+|- .+...+|+|||.|++..+|.+|+..|++..+.++.+.|..
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG---~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG---NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEec---CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 356899999999999999999999999999999994 4466799999999999999999999999988888776543
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=5.9e-11 Score=93.80 Aligned_cols=70 Identities=29% Similarity=0.579 Sum_probs=66.1
Q ss_pred ecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 333 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
|+|||..+++++|+++|++||.|..|.+..+..++.++|+|||+|.+.++|..|+..|++..|.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999998878899999999999999999999999999999988766
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3.1e-11 Score=123.50 Aligned_cols=77 Identities=18% Similarity=0.418 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCH--HHHHHHHHhccCCcccCCcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK--EHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~--e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..-+|||+||++++|+++|..+|..||.|..|.|++ .|| +|||||+|.+. .++.+||..||+..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 457999999999999999999999999999999994 466 99999999987 789999999999999999999987
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
++.
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 754
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-11 Score=113.25 Aligned_cols=82 Identities=22% Similarity=0.459 Sum_probs=78.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||++|...+++.-|...|-+||.|+.|.++.|..+++.||||||+|.-.++|.+||..||+.++.|+.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 43
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=9.7e-11 Score=92.54 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=65.4
Q ss_pred EcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 155 V~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
|+|||..+++++|+++|++||.|..|.+..++.++.++++|||+|.+.++|.+|+..|++..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998878999999999999999999999999988888887754
No 98
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=5.5e-11 Score=116.46 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
.-++|+|.||||..-+-||+.+|.+||.|.+|.|+-+- --||||+||+|.+.++|++|.++||+++|.|++|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 56899999999999999999999999999999999762 3589999999999999999999999999999999987664
No 99
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.7e-12 Score=135.70 Aligned_cols=225 Identities=17% Similarity=0.179 Sum_probs=178.9
Q ss_pred CCCEEEEcCCCcCCCHH-HHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQE-DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~tee-dL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
....+.+.|+.+..... .++..|+.+|.|+.|++.......+...+.++.+....+++.|+. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44566778887776665 578889999999999997633333344489999999999999887 4566677776666544
Q ss_pred CC----------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHH
Q 006327 228 ED----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (650)
Q Consensus 228 ~~----------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A 291 (650)
.. ..++||.||+..+.+.+|...|..+|. +..+.+... ...++.+|.|+|.|...+.+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT--IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch--hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 32 357899999999999999999999997 555544422 24788999999999999999999
Q ss_pred HHHhCCCCeeeCCCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCccc
Q 006327 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371 (650)
Q Consensus 292 ~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G 371 (650)
+.-..+..+ + ...|+|.|+|+..|.+.|+.+|.++|.++.+.++..+ .|+++|
T Consensus 726 V~f~d~~~~-----g---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg 778 (881)
T KOG0128|consen 726 VAFRDSCFF-----G---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKG 778 (881)
T ss_pred hhhhhhhhh-----h---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cccccc
Confidence 975444333 1 2579999999999999999999999999999977764 589999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 372 ~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
.|||.|.+..+|.+++..++...+.-..+.|.+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999988888777776666655
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5e-10 Score=89.28 Aligned_cols=73 Identities=29% Similarity=0.592 Sum_probs=67.5
Q ss_pred eeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 330 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987654 678999999999999999999999999999988775
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.6e-10 Score=90.72 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=54.8
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 342 ENQIRDQIK----GYGDVIRIV-LARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 342 ~~~l~~~F~----~~G~i~~v~-i~~~~~~--~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+++|+++|+ +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..|||+.|.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999995 7776666 899999999999999999999999999999998776
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=3e-10 Score=120.54 Aligned_cols=160 Identities=21% Similarity=0.377 Sum_probs=127.7
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
......+||++||...++.++++++..||.+....++.+..+|.++||||.+|.+.-....|++.||+..+.++++.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999988877654
Q ss_pred CCC------------------------------CCcceeCCcCCCccH-------------HHHHHHHhhcCCcceEEEE
Q 006327 227 SED------------------------------NDTLFVGNICNTWTK-------------EAIKQKLKDYGVEGVENIN 263 (650)
Q Consensus 227 ~~~------------------------------~~~l~v~nLp~~~te-------------~~l~~~F~~~G~~~i~~i~ 263 (650)
+.. ...|.+.|+ +|+ ++|+.-+.+||. |..|.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~--v~~v~ 440 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGA--VRSVE 440 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCc--eeEEe
Confidence 421 111222222 222 344566678888 99998
Q ss_pred Eecc-cc-ccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccC
Q 006327 264 LVSD-IQ-HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315 (650)
Q Consensus 264 i~~d-~~-~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~ 315 (650)
|.+. .. ......|..||+|++.+++++|+++|+|..+ .+++|...|-.
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF----~nRtVvtsYyd 490 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF----ANRTVVASYYD 490 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee----CCcEEEEEecC
Confidence 8776 22 1234467799999999999999999999998 57887766654
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.08 E-value=3e-10 Score=114.91 Aligned_cols=175 Identities=14% Similarity=0.225 Sum_probs=131.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
....++|++++.+.+.+.++..++...|.+..+.+........++++++|.|..++.+..||.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46889999999999999999999999998888888877778899999999999999999999853322332222110000
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
.....+. .+.. .
T Consensus 166 ---------------------------------~~~~~~~---------------------------~n~~--------~ 177 (285)
T KOG4210|consen 166 ---------------------------------TRRGLRP---------------------------KNKL--------S 177 (285)
T ss_pred ---------------------------------ccccccc---------------------------cchh--------c
Confidence 0000000 0000 0
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
.+ ......+.++|.+|+..++.++|+.+|..+|.|..++++.+..++..+|||+|.|.+...+..|+
T Consensus 178 ~~-------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 178 RL-------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cc-------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 00 00001234459999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCCeeCCCeeEEEE
Q 006327 388 NAINNKEFSDGNSKVKL 404 (650)
Q Consensus 388 ~~lng~~~~g~~i~v~~ 404 (650)
.. +...+.++.+.+..
T Consensus 245 ~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEE 260 (285)
T ss_pred hc-ccCcccCccccccc
Confidence 76 78888887766654
No 104
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2e-10 Score=113.19 Aligned_cols=86 Identities=27% Similarity=0.437 Sum_probs=80.6
Q ss_pred hhccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
.....+.+.|||..|.+-+|.++|.-+|+.||+|.+|.|+++..||.+..||||+|.+++++++|.-+|++..|..+.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 006327 224 TAPSED 229 (650)
Q Consensus 224 v~~~~~ 229 (650)
|..++.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 877653
No 105
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.07 E-value=8e-10 Score=116.14 Aligned_cols=78 Identities=18% Similarity=0.332 Sum_probs=66.6
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
..|||+|||.+++...|+++|++||.|+...|......++..+||||+|.+.++++.||.+- -..|+++.|.|+.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 45999999999999999999999999999888665444555599999999999999999864 7788898888887644
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.07 E-value=2.5e-10 Score=120.74 Aligned_cols=81 Identities=27% Similarity=0.467 Sum_probs=77.9
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
..|||+|||+++++++|..+|+..|.|..++++.|+.||+++||||++|.+.++|..|++.|||.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 006327 409 S 409 (650)
Q Consensus 409 ~ 409 (650)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.05 E-value=6.6e-10 Score=88.55 Aligned_cols=72 Identities=35% Similarity=0.694 Sum_probs=66.1
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.++.+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5899999999999999999999999999999987554 77899999999999999999999999888887765
No 108
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=5.7e-10 Score=113.86 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=76.1
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..+|||+|||..+|+++|.++|.+||.|..|.|..++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999999899999999999999999999999999999999999998764
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=7.9e-10 Score=110.19 Aligned_cols=148 Identities=26% Similarity=0.270 Sum_probs=111.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhcc----CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc---
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR--- 221 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~----G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~--- 221 (650)
+.-.|.+++||+++|+.++.+||..- |-++.|.+++. .+|+..|-|||.|..+++|+.||.+- ...|.-+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~kh-rq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKH-RQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHH-HHHHhHHHHHH
Confidence 45678899999999999999999742 23456666554 56899999999999999999999762 11111111
Q ss_pred ----------------------------------CCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcc-eEEEEEec
Q 006327 222 ----------------------------------CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEG-VENINLVS 266 (650)
Q Consensus 222 ----------------------------------i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~-i~~i~i~~ 266 (650)
..+.....+.+|.+.+||.++|.++|..+|..|-... ...|.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 1123334477899999999999999999999986411 22355555
Q ss_pred cccccCCCcceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 267 d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
+ ..|+..|-|||+|.+.+.|.+|+...+++..
T Consensus 318 N--~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 318 N--GQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred c--CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 5 5899999999999999999999987766543
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.03 E-value=7.1e-09 Score=110.58 Aligned_cols=140 Identities=20% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.+.+.+-++++++.+...++++||... .|..+.|..+...+.-.|-++|.|....++++|++. +......+.+.+.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 466778889999999999999998764 356666666655555578999999999999999986 444444444433221
Q ss_pred ---------------------------------------------CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEE-
Q 006327 228 ---------------------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN- 261 (650)
Q Consensus 228 ---------------------------------------------~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~- 261 (650)
....+|||..||..+++..+.++|...-. |++
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~--Ved~ 464 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA--VEDF 464 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh--hhhe
Confidence 11468999999999999999999988776 777
Q ss_pred EEEeccccccCCCcceEEEEecCHHHHHHHHH
Q 006327 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (650)
Q Consensus 262 i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~ 293 (650)
|.|.+.+ +++.++.|||.|...+++.+|+.
T Consensus 465 I~lt~~P--~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 465 IELTRLP--TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred eEeccCC--cccccchhhheeccccccchhhh
Confidence 6666654 77888999999998776666654
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.02 E-value=1.4e-09 Score=82.44 Aligned_cols=56 Identities=21% Similarity=0.492 Sum_probs=50.7
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 345 l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
|+++|++||.|..|.+..+. +++|||+|.+.++|..|++.|||..|.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997763 589999999999999999999999999999999874
No 112
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.3e-10 Score=105.83 Aligned_cols=82 Identities=18% Similarity=0.538 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...+||||++|..++|+.-|...|-.||.|++|.+..|..+++++|||||+|.-.|+|.+||..||...|.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
.+
T Consensus 88 kP 89 (298)
T KOG0111|consen 88 KP 89 (298)
T ss_pred CC
Confidence 65
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.01 E-value=4.8e-10 Score=118.54 Aligned_cols=79 Identities=23% Similarity=0.540 Sum_probs=76.5
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
++|||+|||+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.++|..|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887653
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.96 E-value=1.4e-09 Score=86.46 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=54.6
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEecCCC--CCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 164 QEDVRKVFE----RIGEVIEVR-LHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 164 eedL~~~F~----~~G~V~~v~-l~~d~~t--g~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+++|+++|+ +||.|..|. |+.++.+ ++++|+|||+|.+.++|.+|++.||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 7777666 899999999999999999999999999999998754
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=4e-09 Score=110.91 Aligned_cols=71 Identities=27% Similarity=0.485 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
-..++|+|-|||..+++++|..+|+.||+|..|+.- -..++.+||+|-+..+|+.||++|+...|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 367999999999999999999999999999997653 34689999999999999999999999999998887
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.9e-10 Score=108.40 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=81.3
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
..+.+.|||-.|.+-+|+++|.-+|+.||.|..|.|+++..||.+..||||+|++.+++++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 006327 405 RARLSN 410 (650)
Q Consensus 405 ~~~~~~ 410 (650)
....++
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 877665
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=97.96 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=74.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhccc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
....++|..+|.-+.+..|..+|.+| |.|+.+++.+++.||.++|||||+|++.+.|.-|.+.||++.|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45689999999999999999999998 78888899999999999999999999999999999999999999999999875
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.8e-08 Score=105.20 Aligned_cols=144 Identities=24% Similarity=0.346 Sum_probs=110.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCC--CCCCcc---eEEEEEeCHHHHHHHHHhccC----C--
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS--TNRNKG---YAFVKFANKEHAKRALTEMKN----P-- 215 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~--tg~~~G---~afV~F~~~e~A~~Al~~l~~----~-- 215 (650)
..-++.|||++||++++|+.|...|..||.|.--.-.+... --..+| |+|+.|+++.++...|.++.. -
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 44678999999999999999999999999874322211111 123556 999999999999988877532 1
Q ss_pred -----cccCCcCCC---------------CCCCCCCcceeCCcCCCccHHHHHHHHh-hcCCcceEEEEEeccccccCCC
Q 006327 216 -----VICGKRCGT---------------APSEDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGLS 274 (650)
Q Consensus 216 -----~l~g~~i~v---------------~~~~~~~~l~v~nLp~~~te~~l~~~F~-~~G~~~i~~i~i~~d~~~~g~s 274 (650)
.+..+.|.| ...+..+||||++||.-+|.++|..+|+ -||. |.-+-|-.|++ -.-+
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~k-~KYP 412 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDPK-LKYP 412 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCcc-cCCC
Confidence 112222222 1234589999999999999999999998 7897 88888888753 5678
Q ss_pred cceEEEEecCHHHHHHHHH
Q 006327 275 RGFAFVMFSCHVDAMAAYK 293 (650)
Q Consensus 275 rG~aFV~F~~~e~A~~A~~ 293 (650)
+|.|=|+|.+..+-.+||.
T Consensus 413 kGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCcceeeecccHHHHHHHh
Confidence 9999999999999999986
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.9e-08 Score=103.68 Aligned_cols=157 Identities=17% Similarity=0.318 Sum_probs=113.6
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEecccc--ccCCCcc---eEEEEecCHHHHHHHHHHhCC--CCeee
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRG---FAFVMFSCHVDAMAAYKRLQK--PDVVF 302 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~--~~g~srG---~aFV~F~~~e~A~~A~~~l~~--~~~~~ 302 (650)
+++|||++||+.++++.|...|..||. ..|....... ..-.++| |+|+.|++...+..-+.+... ..+++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 689999999999999999999999995 3444432111 1224566 999999999888877765432 11211
Q ss_pred --CC---CCcceeec---ccCCC-CCCCccccccceeeeecCCCCCCCHHHHHHHhc-ccCCeeEEEEeecCCCCCcccE
Q 006327 303 --GH---PERTVKVA---FAEPL-REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRKDY 372 (650)
Q Consensus 303 --g~---~~~~l~v~---~a~~~-~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~G~ 372 (650)
.. ..+.+.|. +++.. .........+.++|||++||.-++.++|..+|. -||.|..+-|-.|..-.-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 00 01111111 11110 011234456779999999999999999999999 5999999999999888889999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 006327 373 GFIDFSTHEAAVACINA 389 (650)
Q Consensus 373 afV~F~~~~~A~~Ai~~ 389 (650)
|-|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999974
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.2e-09 Score=101.35 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=116.8
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...+||||.||...++++-|.++|-+.|+|..|.|...+. +..+ ||||.|.++-++.-|++.+|+..|.+..+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT-- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc--
Confidence 3568999999999999999999999999999999977643 4445 99999999999999999999999999888654
Q ss_pred CCCCcceeCC----cCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 228 EDNDTLFVGN----ICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 228 ~~~~~l~v~n----Lp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
++.++ |...++.+.+...|+..+. +..+++..+. .++++.++|+++......-.++.......+
T Consensus 83 -----~r~G~shapld~r~~~ei~~~v~s~a~p--~~~~R~~~~~--d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 83 -----LRCGNSHAPLDERVTEEILYEVFSQAGP--IEGVRIPTDN--DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred -----cccCCCcchhhhhcchhhheeeecccCC--CCCccccccc--cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 44555 6777899999999999998 8888888874 588999999988776666666665554443
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=108.78 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=67.1
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
+.|-+.|+|++++-+||.+||..|-.+..-.+++-...|...|-|.|-|++.++|.+|...|+++.|..+.|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4889999999999999999999997775544555456799999999999999999999999999999999988764
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.80 E-value=4e-09 Score=114.11 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=86.0
Q ss_pred hHhhhhhccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 139 NAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 139 ~~~~~~~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
..+.....+--++||||+.|+..+++.+|.++|+.||+|.+|.|+ .+++||||++....+|.+||.+|++..+.
T Consensus 410 P~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 410 PTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred CCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 334444555678999999999999999999999999999999996 45899999999999999999999999999
Q ss_pred CCcCCCCCCCCC------C-----cceeCCcCCCccHHHHHHHHh
Q 006327 219 GKRCGTAPSEDN------D-----TLFVGNICNTWTKEAIKQKLK 252 (650)
Q Consensus 219 g~~i~v~~~~~~------~-----~l~v~nLp~~~te~~l~~~F~ 252 (650)
.+.|+|.|+... + .|=|.-||+..-..+|+.+++
T Consensus 484 ~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 484 DKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 999998887541 1 223455666644444555554
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.79 E-value=6.5e-09 Score=78.71 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=48.7
Q ss_pred HHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 167 L~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
|.++|++||+|..|.+..+. +++|||+|.+.++|.+|++.||+..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999997652 68999999999999999999999999999887754
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=4.4e-10 Score=122.98 Aligned_cols=150 Identities=23% Similarity=0.301 Sum_probs=126.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
....++||.||+..+.+.+|...|..+|.|..|.|....++++.+|+|||.|...+++.+|+.-...+ +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh--------
Confidence 35678999999999999999999999998888877766778999999999999999999999854443 444
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
+..|+|.|+|+..|.+.++.++..+|. ++.+.++.. ..|+++|.|+|.|.+..++.+++.......+. ..
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn--~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r----E~ 805 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN--VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVAGKR----EN 805 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC--ccccchhhh--hccccccceeccCCCcchhhhhcccchhhhhh----hc
Confidence 457999999999999999999999998 888887776 48999999999999999999998776665552 45
Q ss_pred ceeecccCC
Q 006327 308 TVKVAFAEP 316 (650)
Q Consensus 308 ~l~v~~a~~ 316 (650)
.+.|..+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 555555444
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.69 E-value=2.8e-08 Score=94.46 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=117.6
Q ss_pred CcceeCCcCCCccHHH-H--HHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 231 DTLFVGNICNTWTKEA-I--KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~-l--~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
-.+++.++-..+..+- | ...|..+-. +...+++++ ..+.-++++|+.|.....-.++-..-++..+ ...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~--L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki----~~~ 168 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPS--LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKI----GKP 168 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchh--hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccccc----cCc
Confidence 3455555555544443 2 455655544 555566665 3567789999999877766666554444444 122
Q ss_pred ceeecccCCCC-CCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 308 TVKVAFAEPLR-EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 308 ~l~v~~a~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
.|++.-...-. ....+......+||.+.|..+++++-|...|.+|-.....+++++..|++++||+||.|.+..++..|
T Consensus 169 ~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 169 PVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 23332221111 11122333457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEE
Q 006327 387 INAINNKEFSDGNSKVK 403 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~ 403 (650)
+..|||+.++.+.|++.
T Consensus 249 mrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHhhcccccccchhHhh
Confidence 99999999999987654
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=4.9e-08 Score=101.94 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=75.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
...+|||.+|...+-..+|+.+|++||.|+-.+|+.+..+..-++|+||++.+.++|.+||..|+.++|.|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999998887789999999999999999999999999999998887654
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=5.1e-08 Score=90.32 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=71.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~-G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|..||.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+.+.|.-|.+.||+-.|.++.|.+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 3466789999999999999999999998 78999999999999999999999999999999999999998888876543
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=7.5e-08 Score=104.54 Aligned_cols=75 Identities=17% Similarity=0.417 Sum_probs=70.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+++|||++|+..+++.+|.++|+.||.|..|.++.. +|||||++....+|.+||.+|++..|..+.|+|.|++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4689999999999999999999999999999999654 8999999999999999999999999999999999976
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=5.7e-08 Score=101.42 Aligned_cols=81 Identities=15% Similarity=0.427 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
-.+.|||.+|+..+...+|+++|++||.|+-++|+.+..+--.+.|+||++.+.++|.+||..|+.+.|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999998777788999999999999999999999999999999987765
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
+
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=3.3e-08 Score=109.00 Aligned_cols=166 Identities=22% Similarity=0.379 Sum_probs=136.6
Q ss_pred hhhhccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 142 ~~~~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
.+..+....+|||++||...+++.+|+-.|..+|.|..|.|.+- .-+.-.-||||.|.+...+-.|+..+.+..|..-.
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 33444557899999999999999999999999999999998543 23566779999999999999999988887775444
Q ss_pred CCCC----CCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCC
Q 006327 222 CGTA----PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (650)
Q Consensus 222 i~v~----~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~ 297 (650)
+++. .+...+.|++++|..-+....|...|..||. |..|.+-.. .-|++|.|.+...|+.|+..|.+
T Consensus 443 ~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 443 HRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ccccccccccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC-------CcceeeecccCccchhhHHHHhc
Confidence 4432 4456789999999999999999999999999 888777443 25899999999999999999988
Q ss_pred CCeeeCCCCcceeecccCCCCC
Q 006327 298 PDVVFGHPERTVKVAFAEPLRE 319 (650)
Q Consensus 298 ~~~~~g~~~~~l~v~~a~~~~~ 319 (650)
..+ |...+.++|.|+.+...
T Consensus 514 ap~--G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 514 APL--GGPPRRLRVDLASPPGA 533 (975)
T ss_pred CcC--CCCCcccccccccCCCC
Confidence 765 55678899999876443
No 131
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=1.4e-07 Score=88.99 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=72.6
Q ss_pred cceeeeecCCCCCCCHHHHHH----HhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRD----QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+..+|||.||+..+..++|+. +|++||.|..|.... |.+.+|-|||.|.+.+.|..|+.+|+|..|-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999888 999999999998864 4678999999999999999999999999999999999
Q ss_pred EEeeccCC
Q 006327 403 KLRARLSN 410 (650)
Q Consensus 403 ~~~~~~~~ 410 (650)
.++...+.
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 98766544
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=6.9e-08 Score=95.88 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=69.4
Q ss_pred hhccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHh-ccCCcccCCcC
Q 006327 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE-MKNPVICGKRC 222 (650)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~-l~~~~l~g~~i 222 (650)
..+.....||||++|-..+++.+|+++|-+||+|..|.++.. +++|||+|.+.++|++|..+ ++..+|.|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 444557789999999999999999999999999999999754 66999999999999999877 56677889999
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8887664
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=4.4e-08 Score=91.06 Aligned_cols=138 Identities=15% Similarity=0.244 Sum_probs=112.1
Q ss_pred CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 227 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
+...++|||.|+...++++.|.++|-+.|. |..+.|.... .+..+ ||||.|.+.-...-|++.+|+..+. +
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~----~ 76 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDLE----E 76 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchhc----c
Confidence 445689999999999999999999999999 9999988763 55666 9999999999999999999998884 5
Q ss_pred cceeecccCCCCCCCccccccceeeeecC----CCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHH
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDG----VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~ 382 (650)
..+.+. ++.++ |...++.+.+...|+.-|.|..+++..+.. ++.+.++||++--..+
T Consensus 77 ~e~q~~------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 77 DEEQRT------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCA 137 (267)
T ss_pred chhhcc------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhc
Confidence 555443 33344 566788899999999999999999988865 7888899998876666
Q ss_pred HHHHHHHhCC
Q 006327 383 AVACINAINN 392 (650)
Q Consensus 383 A~~Ai~~lng 392 (650)
.-.++....+
T Consensus 138 ~P~~~~~y~~ 147 (267)
T KOG4454|consen 138 VPFALDLYQG 147 (267)
T ss_pred CcHHhhhhcc
Confidence 6666654443
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.4e-07 Score=92.05 Aligned_cols=75 Identities=27% Similarity=0.410 Sum_probs=65.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeeCCCeeEEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKL 404 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~~ 404 (650)
...++|||++|...+++.+|+++|.+||.|..|.++.. +++|||+|.+.++|+.|.+++ |...|+|..|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34689999999999999999999999999999999765 569999999999999888754 66778999999987
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
..
T Consensus 300 g~ 301 (377)
T KOG0153|consen 300 GR 301 (377)
T ss_pred CC
Confidence 63
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.49 E-value=2.5e-08 Score=99.99 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=126.0
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCC---CCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~---tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...|.|.||.+.+|.++|+.+|.-.|.|.++.|+.+.. ......+|||.|.+...+..|.. |.++++.++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 45899999999999999999999999999999986432 24566899999999999988876 677776666544433
Q ss_pred CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 227 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
.. ..+..... +|..++...+.--.+..+ | |.|.+. .+. .+++..
T Consensus 86 ~~-----------~~~~p~r~--af~~l~~~navprll~pd--------g---~Lp~~~-----~lt-------~~nh~p 129 (479)
T KOG4676|consen 86 YG-----------DEVIPDRF--AFVELADQNAVPRLLPPD--------G---VLPGDR-----PLT-------KINHSP 129 (479)
T ss_pred cC-----------CCCCccHH--HHHhcCcccccccccCCC--------C---ccCCCC-----ccc-------cccCCc
Confidence 22 11222221 444444311211112111 0 111110 000 001000
Q ss_pred cceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
..|-...+.+.......+..-..+|+|.+|+..+...++-+.|..+|.|....+.-. ...-+|.|+|........|
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHH
Confidence 111001111111111111222368999999999999999999999999988776432 2344677999998888888
Q ss_pred HHHhCCCeeCCCe
Q 006327 387 INAINNKEFSDGN 399 (650)
Q Consensus 387 i~~lng~~~~g~~ 399 (650)
+. ++|..+.-..
T Consensus 206 lr-~~gre~k~qh 217 (479)
T KOG4676|consen 206 LR-SHGRERKRQH 217 (479)
T ss_pred HH-hcchhhhhhh
Confidence 86 6777776433
No 136
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.49 E-value=6.4e-06 Score=82.92 Aligned_cols=83 Identities=25% Similarity=0.301 Sum_probs=74.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
...+|||.+||..+++++|.++|.++|.|. .|.|-+++.|++++|-|.|.|++...|+.||..++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999999883 477788899999999999999999999999999999999998
Q ss_pred eeEEEEeeccC
Q 006327 399 NSKVKLRARLS 409 (650)
Q Consensus 399 ~i~v~~~~~~~ 409 (650)
.|+|.++...+
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 88887665443
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.46 E-value=1.8e-06 Score=84.27 Aligned_cols=81 Identities=11% Similarity=0.245 Sum_probs=74.6
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
..+|.|.||+..|+.+||+++|..||.++.+.|.++ .+|.+.|.|-|.|...++|.+||+.+||..++|+.+++.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 478999999999999999999999999999999888 4689999999999999999999999999999999999888655
Q ss_pred cC
Q 006327 408 LS 409 (650)
Q Consensus 408 ~~ 409 (650)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=2.7e-07 Score=101.96 Aligned_cols=155 Identities=19% Similarity=0.301 Sum_probs=125.7
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
+++||++||+..+++.+|+..|..+|. |..|.|.... .++-.-|+||.|.+...+-.|...+.+..|..+ .+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk--ve~VDiKtP~--~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----~~ 443 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK--VEEVDIKTPH--IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG----TH 443 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc--ccccccccCC--CCcccchhhhhhhccccCcccchhhcCCccccC----cc
Confidence 789999999999999999999999998 8899887653 445557899999999999999888888776422 33
Q ss_pred eecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 006327 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (650)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ 389 (650)
++.+..+ .....+.|+|++|+.++....|...|..||.|..|.+-.. --||+|.|++...|+.|+..
T Consensus 444 r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 444 RIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 3333332 1234589999999999999999999999999999887332 34899999999999999999
Q ss_pred hCCCeeCCCe--eEEEEe
Q 006327 390 INNKEFSDGN--SKVKLR 405 (650)
Q Consensus 390 lng~~~~g~~--i~v~~~ 405 (650)
|-|..|++-. +.|.++
T Consensus 511 ~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HhcCcCCCCCcccccccc
Confidence 9999999854 444443
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.39 E-value=2.7e-07 Score=87.87 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=119.3
Q ss_pred CEEEEcCCCcCCCHHH-H--HHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC---
Q 006327 151 HEIFIGGLDRDATQED-V--RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT--- 224 (650)
Q Consensus 151 ~tlfV~nLp~~~teed-L--~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v--- 224 (650)
..+|+.|+-.++..+- | -..|..+-.+....++++ .-+..++++|+.|.....-.++-..-+++.+.-..|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566677666665554 3 566777666666666665 34677899999999877777666655555555444442
Q ss_pred ---------CCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHh
Q 006327 225 ---------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (650)
Q Consensus 225 ---------~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l 295 (650)
.+..+.-+||.+.|..+++.+.|...|.+|-. ....+++++ .++++++||+||.|.+..++..|++.|
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps--f~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS--FQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccc--hhhcccccc-ccccccccceeeeecCHHHHHHHHHhh
Confidence 34455678999999999999999999999987 778888888 469999999999999999999999999
Q ss_pred CCCCeeeCCCCcceeecccC
Q 006327 296 QKPDVVFGHPERTVKVAFAE 315 (650)
Q Consensus 296 ~~~~~~~g~~~~~l~v~~a~ 315 (650)
++.-+ ..+.|++..+.
T Consensus 253 ~gkyV----gsrpiklRkS~ 268 (290)
T KOG0226|consen 253 NGKYV----GSRPIKLRKSE 268 (290)
T ss_pred ccccc----ccchhHhhhhh
Confidence 99887 46676665443
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=7.6e-07 Score=86.94 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...+|.|.|||+.++++||+++|..||.++.+.|..+ .+|++.|+|-|.|...++|.+|++.+++..|.|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 4588999999999999999999999999999988887 56999999999999999999999999999999998765443
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=1.6e-06 Score=84.94 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=75.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
....+||+|+.+.+|.+.|..+|+.||.|..|.|+.+..++.++||+||+|.+.+.+..|+. ||+..|.++.+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45799999999999999999999999999999999999999999999999999999999998 99999999999998764
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 43
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=2.6e-06 Score=71.21 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=60.7
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhc--cCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 151 HEIFIGGLDRDATQEDVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~--~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
+||+|+|||...|.++|.+++.. .|...-+.|..|..++.+.|||||.|.+.+.|.+..+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 69999999999999999998876 357777888899999999999999999999999999998877653
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.30 E-value=2e-07 Score=94.46 Aligned_cols=153 Identities=17% Similarity=0.253 Sum_probs=120.9
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
++||++||.+.++..+|..+|...-. ....-.++. .||+||.+.+...|.+|++.+++..-+ .++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVEL---QGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhh---cCceee
Confidence 47999999999999999999987532 112222333 389999999999999999999987655 467777
Q ss_pred ecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006327 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (650)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (650)
+..+-+++. .++++.|+|+|....|+-|..+..+||.|..|..+... .-.-..-|+|.+.+.+..||..|
T Consensus 70 ~~~sv~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 70 VEHSVPKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred ccchhhHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhh
Confidence 777766544 34569999999999999999999999999998774321 12223457889999999999999
Q ss_pred CCCeeCCCeeEEEEe
Q 006327 391 NNKEFSDGNSKVKLR 405 (650)
Q Consensus 391 ng~~~~g~~i~v~~~ 405 (650)
||..|....+++.+-
T Consensus 140 ~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 140 NGPQLENQHLKVGYI 154 (584)
T ss_pred cchHhhhhhhhcccC
Confidence 999999988777664
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.25 E-value=8.9e-05 Score=73.79 Aligned_cols=76 Identities=9% Similarity=0.184 Sum_probs=67.1
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++||+||-|++|++||.+.....| .|..++++.++.+|.++|||+|...+..+.++.++.|-.++|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 36899999999999999999988876 45677888899999999999999999999999999999999999865443
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=86.07 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=75.0
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+.......|||+|+.+.+|.++|..+|+.||.|..|.|..++.+++++|||||+|.+.+.+..||+ |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 444577899999999999999999999999999999999999999999999999999999999999 9999999998876
Q ss_pred CCC
Q 006327 225 APS 227 (650)
Q Consensus 225 ~~~ 227 (650)
...
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 543
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=8.8e-06 Score=68.06 Aligned_cols=68 Identities=19% Similarity=0.396 Sum_probs=62.5
Q ss_pred eeeeecCCCCCCCHHHHHHHhcc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (650)
++|.|+|||...|.++|.+++.. .|....+.++.|..+..+.|||||.|.+++.|.+-.+.++|+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999988866 367788899999999999999999999999999999999999876
No 147
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.18 E-value=1.6e-06 Score=82.95 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=64.1
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCC--------CCCc----ceEEEEEeCHHHHHHHHHhccCCc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST--------NRNK----GYAFVKFANKEHAKRALTEMKNPV 216 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~t--------g~~~----G~afV~F~~~e~A~~Al~~l~~~~ 216 (650)
....|||.|||+.+....|+++|++||.|-.|.|.....+ +.+. --+||+|.++..|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999999999999999999999766444 2222 238899999999999999999999
Q ss_pred ccCCcC
Q 006327 217 ICGKRC 222 (650)
Q Consensus 217 l~g~~i 222 (650)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999864
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=2.1e-06 Score=90.66 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
...+|||+|||+++|..+|+++|++||+|+...|......+++..||||+|.+.+++..||.+ +...|.++++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl 359 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKL 359 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeE
Confidence 446799999999999999999999999999998876543345559999999999999999986 3444444443
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=4.5e-06 Score=88.33 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=64.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
...+|+|-|||..++.++|..+|+.||+|+.|+.-+ ..+|..||+|-+..+|++|+++||+.+|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 457999999999999999999999999999976543 4688999999999999999999999999999877
No 150
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.94 E-value=2.3e-05 Score=78.27 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=70.5
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (650)
.+.|||.|||.++|.+++.++|++||.|. .|+|-++. .|..+|=|.++|-..+++.-|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45799999999999999999999999884 47777774 4999999999999999999999999999999999
Q ss_pred eEEEEeec
Q 006327 400 SKVKLRAR 407 (650)
Q Consensus 400 i~v~~~~~ 407 (650)
|+|+.+.-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99986643
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.8e-05 Score=85.57 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCC---CCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~---tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
..+.|||+||+..++++.|...|..||+|..|+|+.-+. ..+-+.|+||.|-+..+|++|++.|++..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 457899999999999999999999999999999986432 23567899999999999999999999999988888776
Q ss_pred CC
Q 006327 226 PS 227 (650)
Q Consensus 226 ~~ 227 (650)
|.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 66
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=2.9e-05 Score=66.55 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=45.0
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----eeCCCeeEEE
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK-----EFSDGNSKVK 403 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~-----~~~g~~i~v~ 403 (650)
..|+|.+++..++.++|+++|++||.|..|.+.... -.|+|.|.+.++|+.|+.++.-. .|.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468999999999999999999999999999997653 36999999999999999877544 5666665555
Q ss_pred E
Q 006327 404 L 404 (650)
Q Consensus 404 ~ 404 (650)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.76 E-value=6.5e-06 Score=83.68 Aligned_cols=147 Identities=24% Similarity=0.372 Sum_probs=112.6
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC-cccCCcCCCCCCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGKRCGTAPSE 228 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~-~l~g~~i~v~~~~ 228 (650)
..|||+||...++..+|..+|...- .+..-.|+ -.|||||.+.+...|.+|++.+++. .+.|+++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997641 11111121 2579999999999999999999876 4778888776543
Q ss_pred ----CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006327 229 ----DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (650)
Q Consensus 229 ----~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~ 304 (650)
.++++-|.|+|....++.|..++.++|. ++.|..+.... -.-..-|+|.+.+.+..|+..|++..+.
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~--ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g~Q~e--- 145 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT--VENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNGPQLE--- 145 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC--HhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcchHhh---
Confidence 4678999999999999999999999998 88887643211 1112336888999999999999998874
Q ss_pred CCcceeeccc
Q 006327 305 PERTVKVAFA 314 (650)
Q Consensus 305 ~~~~l~v~~a 314 (650)
...+++.+.
T Consensus 146 -n~~~k~~Yi 154 (584)
T KOG2193|consen 146 -NQHLKVGYI 154 (584)
T ss_pred -hhhhhcccC
Confidence 555555544
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.74 E-value=4.5e-05 Score=82.57 Aligned_cols=82 Identities=11% Similarity=0.267 Sum_probs=73.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
.+++|||+||++.++++.|...|..||.|..|+|+.-+ ...+.+-||||-|-+..+|++|++.|+|..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46899999999999999999999999999999998654 235567899999999999999999999999999999988
Q ss_pred Eeecc
Q 006327 404 LRARL 408 (650)
Q Consensus 404 ~~~~~ 408 (650)
|....
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 87543
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.71 E-value=4e-05 Score=77.29 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=75.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~--------~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
+....||||-+||..+++.+|.++|.+||.|. .|+|.+++.|+..|+-|.|.|.+...|+.|+.-+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567999999999999999999999999883 4778899999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCC
Q 006327 219 GKRCGTAPSEDND 231 (650)
Q Consensus 219 g~~i~v~~~~~~~ 231 (650)
+..|+|..+...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9888887765433
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.71 E-value=0.0001 Score=58.72 Aligned_cols=69 Identities=22% Similarity=0.439 Sum_probs=47.1
Q ss_pred CEEEEcCCCcCCCHHHHH----HHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 151 HEIFIGGLDRDATQEDVR----KVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~----~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
..|+|.|||.+.....|+ .++..|| .|..|. .+.|.|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999998887654 5566776 676651 3689999999999999999999999999999887
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 7643
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.71 E-value=0.00013 Score=58.14 Aligned_cols=67 Identities=12% Similarity=0.298 Sum_probs=47.1
Q ss_pred eeeeecCCCCCCCHH----HHHHHhcccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 329 KTVFLDGVPPHWKEN----QIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~----~l~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..|+|.|||...+.. -|++++..|| .|..| ..+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988765 5667777886 45544 24679999999999999999999999999999888
Q ss_pred Ee
Q 006327 404 LR 405 (650)
Q Consensus 404 ~~ 405 (650)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 75
No 158
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.55 E-value=0.00046 Score=77.22 Aligned_cols=16 Identities=50% Similarity=0.528 Sum_probs=8.6
Q ss_pred cCCCcceEEEEecCHH
Q 006327 271 EGLSRGFAFVMFSCHV 286 (650)
Q Consensus 271 ~g~srG~aFV~F~~~e 286 (650)
.|+.++|+--.|.++-
T Consensus 898 ~g~q~~~~g~kfsdhv 913 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSDHV 913 (1282)
T ss_pred ccchhhccccccccch
Confidence 4555555555555543
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.33 E-value=0.00037 Score=59.73 Aligned_cols=59 Identities=27% Similarity=0.527 Sum_probs=39.7
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP 215 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~ 215 (650)
+.|+|.++...++-++|+++|++||.|..|.+.+. ...|||.|.+.+.|++|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999988544 347999999999999999987543
No 160
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0025 Score=68.16 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=76.0
Q ss_pred ccCCCCEEEEcCCCcC-CCHHHHHHHHhcc----CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 146 KIKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~-~teedL~~~F~~~----G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
.....++|-|-||.|+ +..++|.-+|+.| |.|.+|.|+..- | -...|....+.|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------F--------GkeRM~eEeV~GP 229 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------F--------GKERMKEEEVHGP 229 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------h--------hHHHhhhhcccCC
Confidence 3457889999999996 6778999998877 589999997541 1 1222333444454
Q ss_pred cCCCCCC-CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCC
Q 006327 221 RCGTAPS-EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (650)
Q Consensus 221 ~i~v~~~-~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~ 299 (650)
.+.+... .....- -......++-.++.+.+|+ +..++ --||.|+|.+.+.|.++...+.|.+
T Consensus 230 ~~el~~~~e~~~~s---~sD~ee~~~~~~~kLR~Yq---~~rLk-----------YYyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 230 PKELFKPVEEYKES---ESDDEEEEDVDREKLRQYQ---LNRLK-----------YYYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred hhhhccccccCccc---ccchhhhhhHHHHHHHHHH---hhhhe-----------eEEEEEEecCchHHHHHHHhcCcce
Confidence 3322111 000000 0111222233456666665 22222 2479999999999999999999987
Q ss_pred eeeCCCCcceeecc
Q 006327 300 VVFGHPERTVKVAF 313 (650)
Q Consensus 300 ~~~g~~~~~l~v~~ 313 (650)
+- ..+..+-+.|
T Consensus 293 fE--sS~~~~DLRF 304 (650)
T KOG2318|consen 293 FE--SSANKLDLRF 304 (650)
T ss_pred ec--cccceeeeee
Confidence 63 2234444444
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.28 E-value=0.00031 Score=69.76 Aligned_cols=102 Identities=18% Similarity=0.408 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCcCCCHHHH------HHHHhccCCeEEEEEEecCCC-CCCcceE--EEEEeCHHHHHHHHHhccCCcccC
Q 006327 149 KEHEIFIGGLDRDATQEDV------RKVFERIGEVIEVRLHKNFST-NRNKGYA--FVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL------~~~F~~~G~V~~v~l~~d~~t-g~~~G~a--fV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
...-|||-+||..+..+++ .++|.+||.|..|.|-+...+ ....+.+ ||+|.++++|..||.+.++..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4467899999998877763 479999999998888654311 2222334 999999999999999999999999
Q ss_pred CcCCCCC--------------CCCCCcceeCCcC---CCccHHHHHHH
Q 006327 220 KRCGTAP--------------SEDNDTLFVGNIC---NTWTKEAIKQK 250 (650)
Q Consensus 220 ~~i~v~~--------------~~~~~~l~v~nLp---~~~te~~l~~~ 250 (650)
+.|+... ..+..++|+.--- -..|+++|-..
T Consensus 193 r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 9887543 2334455553322 23567776543
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.22 E-value=0.0027 Score=71.40 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=5.7
Q ss_pred CCCCCCcccCCCCcc
Q 006327 477 YDFDNRYTEFHGRQF 491 (650)
Q Consensus 477 ~~~~~~~~~~~~r~~ 491 (650)
.+|.+.-+.|+++++
T Consensus 1241 GdyrnpgggyrgsGG 1255 (1282)
T KOG0921|consen 1241 GDYRNPGGGYRGSGG 1255 (1282)
T ss_pred CCCCCCCCCccCCCC
Confidence 334333333444333
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.21 E-value=0.00022 Score=72.49 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=71.9
Q ss_pred CCCEEE-EcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIF-IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlf-V~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++| |.||++.++.++|+.+|..+|.|+.|++..+..++..+|||||+|.+...+.+|+.. +...+.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999999999999999999999999999999999987 788888888877665
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 43
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.18 E-value=0.00031 Score=70.03 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccC--CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G--~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
....+||+||-|.+|++||.+.+...| .|.+++++.++.+|.++|||+|...+..++++.++.|-.+.|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345799999999999999999998877 6788999999999999999999999999999999999888888875443
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.14 E-value=0.0011 Score=49.13 Aligned_cols=53 Identities=21% Similarity=0.523 Sum_probs=43.7
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHH
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al 209 (650)
+++|-|.+.+.+..+ .|..+|.+||+|+.+.+- ....+.||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 367889999877765 566699999999998884 33568999999999999986
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.90 E-value=0.001 Score=70.99 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=55.5
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHh-ccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~-~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
....++.|+|.||=--.|.-+|++++. .+|.|++.+| | +-+-.|||.|.+.++|.....+|++..+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhcccc
Confidence 344778999999999999999999999 5778888755 2 3466899999999999999999998643
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.89 E-value=0.036 Score=57.45 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=55.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeec---CCCC--C--------cccEEEEEeCCHHHHHHHHHHhCCC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN---MSTA--K--------RKDYGFIDFSTHEAAVACINAINNK 393 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~--~--------~~G~afV~F~~~~~A~~Ai~~lng~ 393 (650)
++++|.+-|||.+-.-+-|.++|..+|.|..|+|..- .... . .+-+|||+|+..+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5689999999999888999999999999999999765 2221 1 1457999999999999999877543
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.002 Score=62.22 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC
Q 006327 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (650)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 366 (650)
-|..|...|.+... .++.++|.|+.. ..|+|.||..-++-+.|...|+.||.|....+..| ..
T Consensus 6 ~ae~ak~eLd~~~~----~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP----KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred HHHHHHHhcCCCCC----CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 46666677888776 489999998864 68999999999999999999999999988777666 34
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 367 ~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
++..+-++|+|...-.|.+|+..++-.-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7788899999999999999998876554444
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.86 E-value=0.0025 Score=63.52 Aligned_cols=79 Identities=22% Similarity=0.444 Sum_probs=61.7
Q ss_pred ceeeeecCCCCCCCHHH----H--HHHhcccCCeeEEEEeecCCCCCc-cc--EEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 328 VKTVFLDGVPPHWKENQ----I--RDQIKGYGDVIRIVLARNMSTAKR-KD--YGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~----l--~~~F~~~G~i~~v~i~~~~~~~~~-~G--~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
.+-+||-+|+..+-.++ | .++|.+||.|..|.|-+......+ .+ -.||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 36789999999776554 3 479999999999988654321111 12 249999999999999999999999999
Q ss_pred eeEEEEee
Q 006327 399 NSKVKLRA 406 (650)
Q Consensus 399 ~i~v~~~~ 406 (650)
.|++.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.83 E-value=0.0027 Score=62.24 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=51.5
Q ss_pred HHHHHHHhcccCCeeEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 342 ENQIRDQIKGYGDVIRIVLARNMSTAKRK-DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 342 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
++++++.|.+||.|..|.|+......... --.||+|+..++|.+|+-.|||+.|+|+.+...|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46889999999999999997764322211 2479999999999999999999999999877554
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0025 Score=67.78 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=61.0
Q ss_pred eeeeecCCCCCCC------HHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC-CCeeE
Q 006327 329 KTVFLDGVPPHWK------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSK 401 (650)
Q Consensus 329 ~~l~V~nLp~~~t------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~ 401 (650)
.+|+|.|+|---. ..-|..+|+++|.|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||+.|. .++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 6889999986322 24577899999999999999887666 8999999999999999999999999987 34444
Q ss_pred EE
Q 006327 402 VK 403 (650)
Q Consensus 402 v~ 403 (650)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 43
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.80 E-value=0.0012 Score=67.96 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEec---CCCCC----------CcceEEEEEeCHHHHHHHHHhccC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTNR----------NKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d---~~tg~----------~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
.++||.+-|||.+-.-+.|.++|..||.|+.|+|+.- +.+.+ .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999999999999999999999999999875 33321 256899999999999999997653
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.002 Score=62.22 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCcccCCcCCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEec
Q 006327 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (650)
Q Consensus 204 ~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~ 283 (650)
-|..|-.+|++....++.+.|..+.. ..|+|.||..-+..+.+.+.|..||. |....++.| ..++..+-++|.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~--~e~av~~vD--~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP--IERAVAKVD--DRGKPTREGIVEFA 80 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc--cchheeeec--ccccccccchhhhh
Confidence 45667777899999999999999988 99999999999999999999999998 877776666 37888899999999
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCcceee
Q 006327 284 CHVDAMAAYKRLQKPDVVFGHPERTVKV 311 (650)
Q Consensus 284 ~~e~A~~A~~~l~~~~~~~g~~~~~l~v 311 (650)
..-.|.+|+..++..-+.....+++.-|
T Consensus 81 ~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred cchhHHHHHHHhccCccccCCCCCccCC
Confidence 9999999999876554433333444433
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.71 E-value=0.003 Score=46.77 Aligned_cols=52 Identities=13% Similarity=0.508 Sum_probs=41.7
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
+.|.|.+.+....+. |..+|.+||.|..+.+.. ..-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 567888888776654 555888999999998862 2448999999999999985
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.012 Score=62.87 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=57.8
Q ss_pred CCCCEEEEcCCCcC--CCHH----HHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 148 KKEHEIFIGGLDRD--ATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 148 ~~~~tlfV~nLp~~--~tee----dL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
--...|+|.|+|-- +..+ -|.++|+++|+|+.+.+..+..+| ++|+.|++|.+..+|+.|++.|||..|.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 35678999999963 2223 356789999999999998775554 99999999999999999999999877653
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.36 E-value=0.0031 Score=60.91 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=61.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCCe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--------AKRKD----YGFIDFSTHEAAVACINAINNKE 394 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--------~~~~G----~afV~F~~~~~A~~Ai~~lng~~ 394 (650)
.+..||+++||+.+...-|+++|++||.|-.|.+.....+ +..+. -|.|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999998765433 22222 36799999999999999999999
Q ss_pred eCCCe
Q 006327 395 FSDGN 399 (650)
Q Consensus 395 ~~g~~ 399 (650)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.34 E-value=0.0015 Score=63.20 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=50.5
Q ss_pred HHHHHHHh-ccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 165 EDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 165 edL~~~F~-~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
++|...|. +||+|+.+.|+.+. .-+..|-+||.|...++|++|+..||+..+.|++|....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 34444555 89999999887763 346789999999999999999999999999999986544
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.16 E-value=0.022 Score=48.10 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=49.3
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEe-ecC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNM------STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~~~------~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
.+.|.|-+.|.. ....|.++|++||.|....-+ ++. .......+..|+|.++.+|.+||. .||+.|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888899887 566788999999999877511 110 001235589999999999999996 79999998765
Q ss_pred E
Q 006327 401 K 401 (650)
Q Consensus 401 ~ 401 (650)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.09 E-value=0.0029 Score=61.28 Aligned_cols=63 Identities=16% Similarity=0.365 Sum_probs=51.8
Q ss_pred HHHHHHhc-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 343 NQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 343 ~~l~~~F~-~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
++|...|+ +||+|..+.|-.+. .-.-+|-++|.|...++|++|++.|||..|.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555556 89999998775542 23457889999999999999999999999999999998753
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.05 E-value=0.017 Score=51.79 Aligned_cols=56 Identities=14% Similarity=0.427 Sum_probs=46.0
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 343 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.+|.+.|.+||.|+-|+++-+ .-+|+|.+.+.|.+|+. |+|.+|.|+.|+|.++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 467788999999988888654 48999999999999986 999999999999998654
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.62 E-value=0.028 Score=47.52 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEE-ecC------CCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLH-KNF------STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~-~d~------~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
.+..|.|=+.|... -..|..+|++||.|.+..-+ ++. ..-.......|+|.+..+|.+||.+ |+.+|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 46778888999884 45788999999999877511 000 0012356889999999999999984 888887653
No 182
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.27 E-value=0.15 Score=51.38 Aligned_cols=12 Identities=0% Similarity=-0.188 Sum_probs=5.1
Q ss_pred CCcCCCccHHHH
Q 006327 236 GNICNTWTKEAI 247 (650)
Q Consensus 236 ~nLp~~~te~~l 247 (650)
...|.++++-.|
T Consensus 155 ~k~p~Nin~~~l 166 (465)
T KOG3973|consen 155 PKQPGNINEWKL 166 (465)
T ss_pred CCCCCCchHHHH
Confidence 334444444333
No 183
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.22 E-value=0.18 Score=57.69 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhcccCCe-----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 339 HWKENQIRDQIKGYGDV-----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G~i-----~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.++..+|-.++..-+.| -.|.|..+ |.||+-... .|...+..|++..+.|+.|.|+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceEEEEC
Confidence 57788887777665544 44666543 789887644 477888999999999999888765
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.16 E-value=0.044 Score=53.94 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=56.4
Q ss_pred CEEEEcCCC--cCCC---HHHHHHHHhccCCeEEEEEEecCCCCCC-cceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 151 HEIFIGGLD--RDAT---QEDVRKVFERIGEVIEVRLHKNFSTNRN-KGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 151 ~tlfV~nLp--~~~t---eedL~~~F~~~G~V~~v~l~~d~~tg~~-~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
+.|.++|+= -.+. ++++++-+.+||.|..|.|+..+..-.. .---||+|...++|.+|+-.||+..+.|+.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 345555552 2232 3568889999999999999877543222 234899999999999999999999999998764
Q ss_pred CC
Q 006327 225 AP 226 (650)
Q Consensus 225 ~~ 226 (650)
..
T Consensus 362 ~F 363 (378)
T KOG1996|consen 362 CF 363 (378)
T ss_pred ee
Confidence 43
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.16 E-value=0.026 Score=57.69 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=63.2
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..|.|.||.+.+|.+.|..+|...|.|..+.|+.+... ....-.|||.|.+...+..|.. |.++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999998764322 2345589999999999988864 8888888888777644
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 186
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=95.15 E-value=0.081 Score=60.50 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=23.2
Q ss_pred CCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 190 RNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 190 ~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
.-+||-||+-.....+..||+-+-+..+
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~ 235 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYA 235 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhhee
Confidence 5689999999999999999988755433
No 187
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.03 E-value=0.26 Score=49.76 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.4
Q ss_pred HHHHHh
Q 006327 344 QIRDQI 349 (650)
Q Consensus 344 ~l~~~F 349 (650)
+|..+|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 343433
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.81 E-value=0.039 Score=49.50 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=51.5
Q ss_pred CCCEEEEcCCC-----cCCCHH----HHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 149 KEHEIFIGGLD-----RDATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 149 ~~~tlfV~nLp-----~~~tee----dL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
...||.|.=+. ...-.+ +|.+.|.+||+|.-|+++.+ .-+|+|.+-++|.+||. +++..|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 55677777555 112222 67788999999998888754 58999999999999998 79999999
Q ss_pred CcCCCCC
Q 006327 220 KRCGTAP 226 (650)
Q Consensus 220 ~~i~v~~ 226 (650)
+.|.|..
T Consensus 97 ~~l~i~L 103 (146)
T PF08952_consen 97 RTLKIRL 103 (146)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9876644
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.64 E-value=0.13 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=44.5
Q ss_pred ceeeeecCCCCCCCHHHHHHHhccc---CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (650)
...|+|+|+. +++.++|+.+|..| .....|.++-|. -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3689999984 58899999999998 235567777763 3889999999999999764
No 190
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=94.03 E-value=0.021 Score=59.73 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=7.1
Q ss_pred Ceeeeeeccch
Q 006327 29 PALVEVAKHND 39 (650)
Q Consensus 29 ~v~vD~a~~k~ 39 (650)
+|.|+-.+.|+
T Consensus 25 KlTi~DtlkKE 35 (458)
T PF10446_consen 25 KLTINDTLKKE 35 (458)
T ss_pred cccHHHHHHHH
Confidence 66666666665
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.98 E-value=0.052 Score=58.53 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=60.7
Q ss_pred cccccceeeeecCCCCCCCHHHHHHHhc-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC---CC
Q 006327 323 EIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DG 398 (650)
Q Consensus 323 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~---g~ 398 (650)
.....++.|+|.||-.-+|.-.|+.++. .+|.|... +.|+ -+-.|||.|.+.++|.+.+.+|||.... .+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3445678999999999999999999999 56666666 3332 3557999999999999999999998764 45
Q ss_pred eeEEEEee
Q 006327 399 NSKVKLRA 406 (650)
Q Consensus 399 ~i~v~~~~ 406 (650)
.|.+.|..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 55555543
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.90 E-value=0.18 Score=40.58 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=40.8
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~ 213 (650)
....+|. .|..+...||.++|+.||.|.--.| -+ ..|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3455555 9999999999999999999854444 33 379999999999999998765
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.54 E-value=0.36 Score=36.79 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=43.2
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhcc----CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~----G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l 212 (650)
...|+|+++. +++-++|+.+|..| ++ ..|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 47778999999998 43 466666553 5899999999999999865
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.59 E-value=0.34 Score=52.06 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=57.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v 402 (650)
..+.|.|+.||..+-.++|+.+|+. |-.++.|.+..+. --||+|++..+|+.|.+.|. -++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578899999999999999999976 7788999886652 37999999999999998764 34566766555
Q ss_pred EEe
Q 006327 403 KLR 405 (650)
Q Consensus 403 ~~~ 405 (650)
.++
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 443
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.51 E-value=0.12 Score=48.95 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhc-cCCe---EEEEEEecCC-C-CCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEV---IEVRLHKNFS-T-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~-~G~V---~~v~l~~d~~-t-g~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
....|.|++||+.+|++++.+.++. ++.. ..+.-..... . ...-.-|||.|.+.+++...+..+++..+...+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4679999999999999999997776 5554 3333222211 1 122356999999999999999999887765444
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.20 E-value=0.38 Score=42.66 Aligned_cols=71 Identities=10% Similarity=0.210 Sum_probs=53.2
Q ss_pred eeeeecCCCCCCC----HHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 329 KTVFLDGVPPHWK----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 329 ~~l~V~nLp~~~t----~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
.+|.|+=|...+. -..+...++.||.|..|.+. .+-.|.|.|.+..+|.+|+.++.. ...|..+.|.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 5666665555433 24455667889999999874 344699999999999999999876 67788888887
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
..+
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 643
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.16 E-value=0.5 Score=50.89 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCcccCCcCCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEE
Q 006327 202 KEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281 (650)
Q Consensus 202 ~e~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~ 281 (650)
..-...+|..+-+..+..+-.+|.+....+.|+|.-||..+-.++|+.+|+.-....+..|.+..+ .--||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEE
Confidence 344455666667777888888888888888899999999999999999998754334778887665 347999
Q ss_pred ecCHHHHHHHHHHhC
Q 006327 282 FSCHVDAMAAYKRLQ 296 (650)
Q Consensus 282 F~~~e~A~~A~~~l~ 296 (650)
|++..+|+.|.+.|.
T Consensus 219 fesd~DAQqAykylr 233 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLR 233 (684)
T ss_pred eecchhHHHHHHHHH
Confidence 999999999988654
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.80 E-value=0.75 Score=37.06 Aligned_cols=54 Identities=17% Similarity=0.466 Sum_probs=40.2
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (650)
..++|. +|..+-..||.++|+.||.|. |..+.+ .-|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 455555 999999999999999999875 444444 259999999999999998775
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.64 E-value=0.15 Score=51.70 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=58.2
Q ss_pred CCEEEEcCCCcCCCHHHHH---HHHhccCCeEEEEEEecCCCCC---CcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 150 EHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTNR---NKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~---~~F~~~G~V~~v~l~~d~~tg~---~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
..-+||-+|+..+..+.+. +.|.+||.|..|.+.++..+.. .--.++|+|...++|..||...++.++.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888899877666554 5789999999999987652111 112389999999999999999999999988765
Q ss_pred CC
Q 006327 224 TA 225 (650)
Q Consensus 224 v~ 225 (650)
..
T Consensus 157 a~ 158 (327)
T KOG2068|consen 157 AS 158 (327)
T ss_pred Hh
Confidence 43
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.54 E-value=0.31 Score=46.01 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=46.1
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcc-cCCe---eEEEEeecC-C-CCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKG-YGDV---IRIVLARNM-S-TAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i---~~v~i~~~~-~-~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
..+|.|++||+.+|++++.+.+.. ++.. ..+.-.... . .......|+|.|.+.+++..-+..++|+.|.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 468999999999999999987776 5544 222211111 1 112234699999999999999999999877654
No 201
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.49 E-value=0.21 Score=59.05 Aligned_cols=14 Identities=7% Similarity=0.385 Sum_probs=10.8
Q ss_pred CCHHHHHHHHhccC
Q 006327 162 ATQEDVRKVFERIG 175 (650)
Q Consensus 162 ~teedL~~~F~~~G 175 (650)
.|-++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46788999988764
No 202
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.78 E-value=0.13 Score=54.01 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.0
Q ss_pred CEEEEcC
Q 006327 151 HEIFIGG 157 (650)
Q Consensus 151 ~tlfV~n 157 (650)
-.+|.-.
T Consensus 122 ~~~WtP~ 128 (458)
T PF10446_consen 122 YEFWTPG 128 (458)
T ss_pred ceeeccc
Confidence 3444443
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.57 E-value=0.79 Score=40.71 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=51.2
Q ss_pred ccCCCCEEEEcCCCcCCCH-HH---HHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 146 KIKKEHEIFIGGLDRDATQ-ED---VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te-ed---L~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
+...-.||.|+=|..++.. +| |...++.||+|.+|.++- +-.|.|.|.+..+|=+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3446789999877766533 34 555678899999999863 34799999999999999998765 333443
Q ss_pred CC
Q 006327 222 CG 223 (650)
Q Consensus 222 i~ 223 (650)
+.
T Consensus 154 ~q 155 (166)
T PF15023_consen 154 FQ 155 (166)
T ss_pred EE
Confidence 33
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.12 E-value=1.1 Score=34.81 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=42.4
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
.++-++|+..+.+|+- .+|..++ .|| ||.|.+..+|++|....+++.+....+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778999999999963 4444442 344 8999999999999999999988875543
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.69 E-value=3 Score=36.03 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred eeeeecCCCCCCCHHHHHHHhccc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
..+.+-..|..++.++|..+.+.+ ..|..++|+++.. .++=-+.++|.+.+.|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455566677787766665 4667888988742 345578899999999999999999999875
No 206
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=89.46 E-value=0.9 Score=53.54 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=12.9
Q ss_pred EEcCCCcCCCHHHHHHHHhc
Q 006327 154 FIGGLDRDATQEDVRKVFER 173 (650)
Q Consensus 154 fV~nLp~~~teedL~~~F~~ 173 (650)
+.-+||......+|..+..+
T Consensus 1445 v~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1445 VELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEecCCCcchHHHHHHHH
Confidence 33457877777776666554
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.08 E-value=0.2 Score=52.91 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCcCC-CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDA-TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~-teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..+.|-+.-+|+.+ |-.+|..+|.+||+|..|.+-. +.-.|.|+|.+..+|-.|.. .++..|+++.|++.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 55677777777765 5688999999999999998732 24579999999999977776 6888999999987776
Q ss_pred CCCC
Q 006327 228 EDND 231 (650)
Q Consensus 228 ~~~~ 231 (650)
..+.
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 6544
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.95 E-value=0.25 Score=54.34 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=63.5
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
.....+|||+|+...+..+-++.+...||.|..+..+. |||..|..+..+..|+..++-..+++..+.+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34568999999999999999999999999988876643 899999999999999999999999998877766
Q ss_pred e
Q 006327 405 R 405 (650)
Q Consensus 405 ~ 405 (650)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 209
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.88 E-value=0.61 Score=53.67 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=15.4
Q ss_pred CcceEEEEecCHHHHHHHHHHhCC
Q 006327 274 SRGFAFVMFSCHVDAMAAYKRLQK 297 (650)
Q Consensus 274 srG~aFV~F~~~e~A~~A~~~l~~ 297 (650)
-+||-||+-.....+..|++.+-+
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~n 232 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRN 232 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhh
Confidence 357777777666666666665443
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.86 E-value=0.3 Score=53.74 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=59.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....+|||+||...+.++=++.++..||-|.++.... |+|+.|.....+..|+..|+...+.+..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 44678999999999999999999999999998876642 89999999999999999888777777766543
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.42 E-value=0.88 Score=43.18 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=46.1
Q ss_pred CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeeCCCeeEEEEe
Q 006327 341 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKLR 405 (650)
Q Consensus 341 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~~ 405 (650)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...|+ +..|.|..++|.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 35789999999999988888765 3458999999999999999999 99999999888876
No 212
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.23 E-value=2.6 Score=36.37 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
....+.|...|.-++-++|..+...+- .|..++|+++. ..++=.+.++|.+.++|.......||+.++
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555555666667776666654 67888898873 246777999999999999999999887664
No 213
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=1.5 Score=45.36 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
-...|-|.++|.....+||..+|..|+. =-.|..+-+ -.||-.|.+...|..||. |.+.+|.-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt-~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT-LKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh-ccCceEEee
Confidence 4468999999999999999999999974 234444444 279999999999999998 455544333
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.60 E-value=0.39 Score=50.73 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=58.4
Q ss_pred ceeeeecCCCCCC-CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+.|-+.-.|+.+ +-++|..+|.+||.|..|.|-+. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3455666666654 46899999999999999988655 2259999999999977754 78999999999999865
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.74 E-value=38 Score=34.18 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecC-------CCCCCcceEEEEEeCHHHHHHHH
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-------STNRNKGYAFVKFANKEHAKRAL 209 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~-------~tg~~~G~afV~F~~~e~A~~Al 209 (650)
..+.|.+.||..+++-..+...|-+||+|++|.|+.+. ..........+.|-+.+.|....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 35778889999999999999999999999999999774 12234467889999998876543
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.43 E-value=0.46 Score=48.32 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=59.4
Q ss_pred ceeeeecCCCCCCCHHH-HH--HHhcccCCeeEEEEeecCCCCC---cccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 328 VKTVFLDGVPPHWKENQ-IR--DQIKGYGDVIRIVLARNMSTAK---RKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~-l~--~~F~~~G~i~~v~i~~~~~~~~---~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
.+-++|-+|+..+-.+. |+ ..|.+||.|..|.+..+..... ...-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 35678888888765444 43 5899999999999887652111 122389999999999999999999999998876
Q ss_pred EEEee
Q 006327 402 VKLRA 406 (650)
Q Consensus 402 v~~~~ 406 (650)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 66543
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.05 E-value=2.7 Score=42.11 Aligned_cols=63 Identities=22% Similarity=0.436 Sum_probs=49.9
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
...|-|-++|...+. -|..+|++||+|+.... ..+-.+-+|.|.+.-+|.+||.+ ++++|.|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 567788888876554 57889999999987755 24456899999999999999985 77777665
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.91 E-value=4.7 Score=32.03 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhcccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|+.++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 577888888887764 4456777544 789887654 788889999999999999988753
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.39 E-value=1.6 Score=35.89 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=43.5
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCC--CCccccccceeeeecCCCCCCCHHHHHHHhc
Q 006327 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE--PDPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350 (650)
Q Consensus 278 aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~--~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~ 350 (650)
|+|+|....-|...++ +....+.++.....++|....-... -.-......++|.|.|||..++++.|++..+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999886 3334444432222333322211111 1111222457899999999999999998654
No 220
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=82.18 E-value=1 Score=48.39 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=13.3
Q ss_pred EEEEcCCCcCCCHHHHHHHH
Q 006327 152 EIFIGGLDRDATQEDVRKVF 171 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F 171 (650)
.-.|+.||--++.++-..++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 34567788777777766554
No 221
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.99 E-value=0.65 Score=52.52 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc--cCCcCCCCCC
Q 006327 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI--CGKRCGTAPS 227 (650)
Q Consensus 153 lfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l--~g~~i~v~~~ 227 (650)
..+-|.+-..|-..|..+|.+||.|.+++..++ ...|.|+|.+.+.|..|+.+|+++.+ .|-+.+|..+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 334455556677789999999999999999877 44799999999999999999998765 3555555444
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.79 E-value=3.6 Score=43.54 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
+..|+|-.+|..+|-.||..|+..|- .|.+|+|+++. -.++=.+.|.|.+.++|......+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998765 68999999963 2455678899999999999999999876653
No 223
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.69 E-value=2.3 Score=40.41 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=43.8
Q ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc--CCcccCCcCCCCCC
Q 006327 163 TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTAPS 227 (650)
Q Consensus 163 teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~v~~~ 227 (650)
....|+++|..++.+..+.+.+. -+-..|.|.+.++|.+|...|+ +..+.|..+++-.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 44789999999998888877643 5568999999999999999999 88888887765443
No 224
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.02 E-value=4.8 Score=42.70 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=57.9
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
.+.|+|=.+|..+|-.||..|+..|- .|..++|+++.. ..+=.+.|.|.+.++|......+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 678999999632 233357899999999999999999999885
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=8.1 Score=42.29 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=64.8
Q ss_pred cccccceeeeecCCCCC-CCHHHHHHHhccc----CCeeEEEEeecC----------CCCC-------------------
Q 006327 323 EIMAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNM----------STAK------------------- 368 (650)
Q Consensus 323 ~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~----------~~~~------------------- 368 (650)
.....+++|-|-||.|. +...+|.-+|+.| |.|..|.|.... .+|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 33446789999999994 8889999988876 688888875432 1111
Q ss_pred ------------------cccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 369 ------------------RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 369 ------------------~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.-=||.|+|.+++.|.+....++|.+|......+.++.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11279999999999999999999999998877776653
No 226
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=79.52 E-value=2.8 Score=45.27 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=5.3
Q ss_pred ccchhHHhhh
Q 006327 36 KHNDIIEAIF 45 (650)
Q Consensus 36 ~~k~~~~~~~ 45 (650)
++|+++.++-
T Consensus 411 i~keE~~~L~ 420 (615)
T KOG0526|consen 411 ISKEEYGKLF 420 (615)
T ss_pred cCHHHHHHHH
Confidence 5566555433
No 227
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.58 E-value=3.7 Score=41.21 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=48.8
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (650)
.-|.|-++|... -.-|..+|++||.|+...... .-.|-.|.|.+.-+|.+||. .||+.|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 567777777643 356778999999998776542 23489999999999999997 6898888754
No 228
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.87 E-value=2.3 Score=49.96 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=5.3
Q ss_pred hccCCccccCC
Q 006327 12 SNYDNKERLGD 22 (650)
Q Consensus 12 ~~~n~~~~~gr 22 (650)
.-.....|.|+
T Consensus 1682 e~qesl~iR~d 1692 (3015)
T KOG0943|consen 1682 EIQESLPIRGD 1692 (3015)
T ss_pred hhhhcccccCC
Confidence 33344455555
No 229
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.44 E-value=1.7 Score=49.43 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=58.0
Q ss_pred eeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC--CCeeEEEEeecc
Q 006327 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKLRARL 408 (650)
Q Consensus 331 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~~~~~ 408 (650)
..+.|.+-.++-.-|..+|.+||.|..++.+++.. .|.|+|.+.+.|..|+.+|+|+++- |.+.+|.++...
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34455566677888999999999999999988743 6999999999999999999999754 667677666543
No 230
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=76.48 E-value=1.3 Score=46.28 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=3.6
Q ss_pred CCHHHHH
Q 006327 162 ATQEDVR 168 (650)
Q Consensus 162 ~teedL~ 168 (650)
+|.+|+.
T Consensus 190 LT~eDF~ 196 (324)
T PF05285_consen 190 LTPEDFA 196 (324)
T ss_pred CCHHHHH
Confidence 3555544
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.84 E-value=5.9 Score=31.42 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=35.6
Q ss_pred cCCCHHHHHHHHhccC-----CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 160 RDATQEDVRKVFERIG-----EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 160 ~~~teedL~~~F~~~G-----~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|+++.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 3577888888887764 4677888644 89998775 478889999999999999988754
No 232
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=72.46 E-value=2.2 Score=46.51 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHhCCCeeCCCee
Q 006327 379 THEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 379 ~~~~A~~Ai~~lng~~~~g~~i 400 (650)
+.+++.+|-+.+-...|.|+.|
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCcc
Confidence 4566666666665666666554
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.91 E-value=2.2 Score=35.04 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=41.3
Q ss_pred EEEEEeCHHHHHHHHHhccCCc-ccCCcC---------------CCCCCCCCCcceeCCcCCCccHHHHHHHHh
Q 006327 195 AFVKFANKEHAKRALTEMKNPV-ICGKRC---------------GTAPSEDNDTLFVGNICNTWTKEAIKQKLK 252 (650)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~~-l~g~~i---------------~v~~~~~~~~l~v~nLp~~~te~~l~~~F~ 252 (650)
|+|+|.....|++.++.-.... +.+..+ .+......++|.|.|||..+.++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998632222 222222 233344578999999999999999887653
No 234
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.93 E-value=13 Score=28.81 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 161 ~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
.++-++|+..+..|+- ..|+ .+ . .| =||.|.+.++|++|+...++..+....
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d-~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DD-R----TG-FYIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ec-C----CE-EEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 5678899999999963 2333 33 2 23 489999999999999999888766544
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.49 E-value=13 Score=36.84 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred ceEEEEecCH----HHHHHHHHHhCCCCeeeCCCCcceeecccCCCCC-----------------CCccccccceeeeec
Q 006327 276 GFAFVMFSCH----VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE-----------------PDPEIMAHVKTVFLD 334 (650)
Q Consensus 276 G~aFV~F~~~----e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~-----------------~~~~~~~~~~~l~V~ 334 (650)
..-||.|... --..+.++-|.+..+.+......++|.-+..+.. ....+.....+|++.
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 4567776543 3345555667776665544444555543321110 011122334678888
Q ss_pred CCCCC------------CCHHHHHHHhcccCCeeEEEEe
Q 006327 335 GVPPH------------WKENQIRDQIKGYGDVIRIVLA 361 (650)
Q Consensus 335 nLp~~------------~t~~~l~~~F~~~G~i~~v~i~ 361 (650)
+||-. .+++-|+..|..||.|..|.|+
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 88753 3568899999999999999885
No 236
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=67.47 E-value=2.6 Score=45.53 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=3.1
Q ss_pred CCCcCCC
Q 006327 157 GLDRDAT 163 (650)
Q Consensus 157 nLp~~~t 163 (650)
|-|.-+|
T Consensus 534 napkra~ 540 (615)
T KOG0526|consen 534 NAPKRAT 540 (615)
T ss_pred CCCccch
Confidence 4454444
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=67.42 E-value=15 Score=38.30 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=30.8
Q ss_pred ccCCCCEEEEcCCCcC-CCHHHHHHHHhcc----CCeEEEEEEec
Q 006327 146 KIKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKN 185 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~-~teedL~~~F~~~----G~V~~v~l~~d 185 (650)
.-.....|-|-||.|+ +...+|...|+.| |.|..|.|+..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3556789999999986 5667898888876 57888888654
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.63 E-value=2 Score=46.50 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
-..++|||+||+++++-.+|..+|+.+--+..+.+...........+.+|.|.---....|+.+||+.-+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 35789999999999999999999999876666666444334556778999999877777777777766554
No 239
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=66.25 E-value=7.4 Score=41.42 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=9.8
Q ss_pred CCCEEEEcCCCcCCCHHHH
Q 006327 149 KEHEIFIGGLDRDATQEDV 167 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL 167 (650)
...+||-+-..+.+.-++|
T Consensus 315 ~dYkvftr~fDe~v~aeel 333 (620)
T COG4547 315 VDYKVFTREFDEIVLAEEL 333 (620)
T ss_pred ccccccchhhhhhhhHHHh
Confidence 4456666655554444443
No 240
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.88 E-value=3.7 Score=48.36 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.8
Q ss_pred CcceeCCcCCC
Q 006327 231 DTLFVGNICNT 241 (650)
Q Consensus 231 ~~l~v~nLp~~ 241 (650)
+.-|+.||-.+
T Consensus 1930 rssflSN~Red 1940 (3015)
T KOG0943|consen 1930 RSSFLSNLRED 1940 (3015)
T ss_pred hhhhhhhcccc
Confidence 34444454433
No 241
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=61.63 E-value=3.2 Score=45.63 Aligned_cols=6 Identities=17% Similarity=-0.042 Sum_probs=3.0
Q ss_pred eeeeee
Q 006327 30 ALVEVA 35 (650)
Q Consensus 30 v~vD~a 35 (650)
+-+-|+
T Consensus 896 ~nlnW~ 901 (1001)
T COG5406 896 ANLNWN 901 (1001)
T ss_pred ccccHH
Confidence 444555
No 242
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=59.47 E-value=3.7 Score=46.07 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=15.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 372 YGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 372 ~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
--||.-.+.++-..|.++|-.-.+.|.
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCCc
Confidence 346666666666666665544444443
No 243
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=57.74 E-value=11 Score=42.38 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=7.7
Q ss_pred CCCCCCHHHHHHH
Q 006327 336 VPPHWKENQIRDQ 348 (650)
Q Consensus 336 Lp~~~t~~~l~~~ 348 (650)
+|..+|+++|...
T Consensus 552 ~~l~vTledll~a 564 (822)
T KOG2141|consen 552 LPLSVTLEDLLHA 564 (822)
T ss_pred ccccccHHHhhCh
Confidence 4555666666554
No 244
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=56.61 E-value=5.1 Score=41.88 Aligned_cols=10 Identities=10% Similarity=-0.140 Sum_probs=4.7
Q ss_pred ccHHHHHHHH
Q 006327 242 WTKEAIKQKL 251 (650)
Q Consensus 242 ~te~~l~~~F 251 (650)
++..+|..+.
T Consensus 231 v~~~dIe~~~ 240 (324)
T PF05285_consen 231 VDPSDIEGFH 240 (324)
T ss_pred CCHHHHHhHH
Confidence 4555554443
No 245
>PHA02664 hypothetical protein; Provisional
Probab=56.31 E-value=28 Score=35.21 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=12.0
Q ss_pred ccchhhhhccCCccccC
Q 006327 5 KFSEDKVSNYDNKERLG 21 (650)
Q Consensus 5 ~~~~~~~~~~n~~~~~g 21 (650)
..+|++++..||....-
T Consensus 392 aaae~~~~~a~gsp~aa 408 (534)
T PHA02664 392 AAAERAANGARGSPMAA 408 (534)
T ss_pred hhhhhhhccccCCcccC
Confidence 35688888888877653
No 246
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.00 E-value=5.4 Score=42.42 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.9
Q ss_pred CCCeeEEEE
Q 006327 396 SDGNSKVKL 404 (650)
Q Consensus 396 ~g~~i~v~~ 404 (650)
.||.|+-.|
T Consensus 445 KgRKLrY~V 453 (483)
T KOG2773|consen 445 KGRKLRYHV 453 (483)
T ss_pred cCceeeeeh
Confidence 344444443
No 247
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=52.09 E-value=30 Score=34.51 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=35.9
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHH
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKE 203 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e 203 (650)
.-|+|+||+.++.-.||+..+.+.+-+ -+.|... -+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 349999999999999999999987633 3333222 34778999997653
No 248
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.87 E-value=21 Score=40.49 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.9
Q ss_pred CCcC----CCHHHHHHHHhccC
Q 006327 158 LDRD----ATQEDVRKVFERIG 175 (650)
Q Consensus 158 Lp~~----~teedL~~~F~~~G 175 (650)
||+. .|-++|.++++++-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6654 46788888888765
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.75 E-value=18 Score=33.64 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCC--CCcceEEEEEeCHHHHHHHHHh
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTE 211 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg--~~~G~afV~F~~~e~A~~Al~~ 211 (650)
.++++.+ +.+...++|.++-+ |.+..|.+-+. ..+ ..+|..||+|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4677777 55555566666665 77888777544 223 5789999999999999998875
No 250
>COG4907 Predicted membrane protein [Function unknown]
Probab=51.14 E-value=27 Score=37.31 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHHhcccC-----CeeEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhCCCe
Q 006327 342 ENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFST----HEAAVACINAINNKE 394 (650)
Q Consensus 342 ~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~G~afV~F~~----~~~A~~Ai~~lng~~ 394 (650)
|+..+++++.|. .++.|.|+.+ ++.|.+ .+.+.+|++.++-.+
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~----------ylVYatALGV~dkVvkam~~~~~~e 539 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQ----------YLVYATALGVSDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhh----------hhhhhhhhccHHHHHHHHHHhCcHh
Confidence 566666666554 3456666544 223333 345566666555443
No 251
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=51.06 E-value=1.7e+02 Score=33.86 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=4.8
Q ss_pred ceEEEEecCHHH
Q 006327 276 GFAFVMFSCHVD 287 (650)
Q Consensus 276 G~aFV~F~~~e~ 287 (650)
|.|.+-|-+..-
T Consensus 632 GIalLPFiDe~r 643 (931)
T KOG2044|consen 632 GIALLPFIDERR 643 (931)
T ss_pred ccccccccchhh
Confidence 334444444333
No 252
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=50.99 E-value=1.8e+02 Score=31.96 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=5.9
Q ss_pred EEEEeCHHHHHHHH
Q 006327 196 FVKFANKEHAKRAL 209 (650)
Q Consensus 196 fV~F~~~e~A~~Al 209 (650)
++.|.+......++
T Consensus 223 ~~~~~~~~~k~~~l 236 (456)
T PRK10590 223 HVHFVDKKRKRELL 236 (456)
T ss_pred EEEEcCHHHHHHHH
Confidence 34444444433333
No 253
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.38 E-value=28 Score=34.73 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=36.2
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCee-EEEEeecCCCCCcccEEEEEeCCHH
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHE 381 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~G~afV~F~~~~ 381 (650)
+-|+|+||+.++.-.||+..+.+.+-+- .+.+ ..+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 5699999999999999999999877443 3332 225778999997744
No 254
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=50.28 E-value=3.8 Score=35.72 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=6.7
Q ss_pred CCeeeeeecc
Q 006327 28 EPALVEVAKH 37 (650)
Q Consensus 28 ~~v~vD~a~~ 37 (650)
+|..|-|.+-
T Consensus 46 nPRKlkWT~~ 55 (131)
T PRK14891 46 EARDLEWTEA 55 (131)
T ss_pred CCccchhHHH
Confidence 5677788743
No 255
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.13 E-value=17 Score=31.69 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=28.6
Q ss_pred EEEEcCCCcCC---------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHH
Q 006327 152 EIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205 (650)
Q Consensus 152 tlfV~nLp~~~---------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A 205 (650)
++.|-|++... +.+.|++.|..|..++ |+.+.+. .-+.|++.|+|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 56677776543 5578999999999875 5555553 35689999999865443
No 256
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.87 E-value=30 Score=30.21 Aligned_cols=57 Identities=5% Similarity=0.206 Sum_probs=31.2
Q ss_pred eeeeecCCCCC---------CCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 006327 329 KTVFLDGVPPH---------WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACIN 388 (650)
Q Consensus 329 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~-~~~A~~Ai~ 388 (650)
.++.|-|++.. ++-+.|++.|+.|..++ ++.+.+.. ...|+++|+|.. ..-...|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 35566666543 35588999999998765 66666643 578999999985 444455543
No 257
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.65 E-value=20 Score=27.92 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=45.3
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 165 edL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
++|.+.|++.| +|..|+-+..+.+......-||+.....+... .|+=+.|++.+|.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899988 88999988887777777888888876644433 2444567788777766544
No 258
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=48.58 E-value=20 Score=38.53 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=11.8
Q ss_pred CeeeeeeccchhHHhhh
Q 006327 29 PALVEVAKHNDIIEAIF 45 (650)
Q Consensus 29 ~v~vD~a~~k~~~~~~~ 45 (650)
.+++-|++.+.++....
T Consensus 14 s~k~~~~~~~dk~~~~~ 30 (517)
T KOG3118|consen 14 STKTRKDIVEDKYDDEI 30 (517)
T ss_pred ccCcchhhhhhhhcchh
Confidence 67777887777776433
No 259
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=47.92 E-value=6.1 Score=44.04 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=4.2
Q ss_pred EeCHHHHHHH
Q 006327 199 FANKEHAKRA 208 (650)
Q Consensus 199 F~~~e~A~~A 208 (650)
+.+.+...+.
T Consensus 236 ~sD~e~Idrl 245 (556)
T PF05918_consen 236 PSDPESIDRL 245 (556)
T ss_dssp SSSHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 3344444433
No 260
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=47.18 E-value=69 Score=36.81 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=8.5
Q ss_pred eCHHHHHHHHHhc
Q 006327 200 ANKEHAKRALTEM 212 (650)
Q Consensus 200 ~~~e~A~~Al~~l 212 (650)
.....+.+||+++
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 4456677777774
No 261
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=46.80 E-value=12 Score=37.11 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.9
Q ss_pred cchhhhh
Q 006327 6 FSEDKVS 12 (650)
Q Consensus 6 ~~~~~~~ 12 (650)
||+|-.+
T Consensus 96 YSdry~~ 102 (233)
T PF11705_consen 96 YSDRYKK 102 (233)
T ss_pred HHHHHhh
Confidence 4444433
No 262
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=46.80 E-value=10 Score=43.39 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 006327 285 HVDAMAAYKRL 295 (650)
Q Consensus 285 ~e~A~~A~~~l 295 (650)
..++..|+.+|
T Consensus 401 A~D~v~al~AL 411 (622)
T PF02724_consen 401 ASDVVYALTAL 411 (622)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 263
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=46.56 E-value=30 Score=31.40 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHhc-cCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC----------
Q 006327 161 DATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED---------- 229 (650)
Q Consensus 161 ~~teedL~~~F~~-~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~---------- 229 (650)
..+-..|...+.+ ++....+.+.. ...++..++|.+.+++.+++.. ....+.+..+.+..-.+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccccee
Confidence 4556666666655 33332333322 1356899999999999999974 44445555554433221
Q ss_pred --CCcceeCCcCCC-ccHHHHHHHHhhcCCcceEEEEEe
Q 006327 230 --NDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLV 265 (650)
Q Consensus 230 --~~~l~v~nLp~~-~te~~l~~~F~~~G~~~i~~i~i~ 265 (650)
.--|.|.|||.. ++++-++.+.+..|. +..+...
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~--~i~vD~~ 138 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE--PIEVDEN 138 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC--eEEEEcC
Confidence 122557899988 788999999999998 7776654
No 264
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.48 E-value=5.9 Score=39.04 Aligned_cols=69 Identities=20% Similarity=0.433 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCcCC------------CHHHHHHHHhccCCeEEEEEEe-cC----CCCCCcc-----e---------EEE
Q 006327 149 KEHEIFIGGLDRDA------------TQEDVRKVFERIGEVIEVRLHK-NF----STNRNKG-----Y---------AFV 197 (650)
Q Consensus 149 ~~~tlfV~nLp~~~------------teedL~~~F~~~G~V~~v~l~~-d~----~tg~~~G-----~---------afV 197 (650)
...||++.+||-.| ++.-|+..|..||.|..|.|.. ++ -+++..| | |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 45699999998543 5677999999999998877642 21 2344333 3 345
Q ss_pred EEeCHHHHHHHHHhccCCcc
Q 006327 198 KFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 198 ~F~~~e~A~~Al~~l~~~~l 217 (650)
+|-.-..-..|+.+|.+..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55555555566666665544
No 265
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=45.90 E-value=5.3e+02 Score=29.79 Aligned_cols=16 Identities=6% Similarity=0.206 Sum_probs=10.0
Q ss_pred CCCCCCHHHHHHHhcc
Q 006327 336 VPPHWKENQIRDQIKG 351 (650)
Q Consensus 336 Lp~~~t~~~l~~~F~~ 351 (650)
.-|+|.++|.|-+...
T Consensus 7 ~rWDW~~ED~K~VvqR 22 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQR 22 (828)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 4466777777666554
No 266
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.82 E-value=22 Score=27.73 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=45.9
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCCC
Q 006327 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (650)
Q Consensus 165 edL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~ 230 (650)
++|.+-|...| +|..|+-+..+.++.....-||+.....+...++ +=..|++..|.|.+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46888888888 7888888888777888888999988776644433 335677777777665443
No 267
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.33 E-value=19 Score=33.61 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=49.6
Q ss_pred eeeeecCCCCCCC-----HHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC-eeEE
Q 006327 329 KTVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKV 402 (650)
Q Consensus 329 ~~l~V~nLp~~~t-----~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~v 402 (650)
+.+.+.+|+..+- ......+|.++-......+++. .++.-|.|.+++.|..|...++.+.|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3455556655432 2345567777766555555443 45677899999999999999999999999 6666
Q ss_pred EEe
Q 006327 403 KLR 405 (650)
Q Consensus 403 ~~~ 405 (650)
.++
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 655
No 268
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=45.23 E-value=23 Score=37.87 Aligned_cols=8 Identities=13% Similarity=0.273 Sum_probs=3.7
Q ss_pred ccCCcCCC
Q 006327 217 ICGKRCGT 224 (650)
Q Consensus 217 l~g~~i~v 224 (650)
+.|++|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 34555444
No 269
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.16 E-value=20 Score=38.31 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=3.1
Q ss_pred hhhhhccC
Q 006327 8 EDKVSNYD 15 (650)
Q Consensus 8 ~~~~~~~n 15 (650)
.++.++.|
T Consensus 31 ~~~~~~~~ 38 (483)
T KOG2773|consen 31 QKAARLLN 38 (483)
T ss_pred hhhhhcch
Confidence 33333333
No 270
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.31 E-value=41 Score=35.03 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.3
Q ss_pred EEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCCCCcceeCCcCCCccHHHHHHHHhh
Q 006327 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253 (650)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~ 253 (650)
|||+|.+..+|..|++.+.... ...+.+..+...+.|+=.||.....+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999999654332 35667888888888888899877777777765544
No 271
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=39.75 E-value=62 Score=37.30 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 006327 379 THEAAVACIN 388 (650)
Q Consensus 379 ~~~~A~~Ai~ 388 (650)
++....-||.
T Consensus 500 ~~~~~~~~i~ 509 (629)
T PRK11634 500 EVRHIVGAIA 509 (629)
T ss_pred CHHHHHHHHH
Confidence 3445555554
No 272
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=37.60 E-value=49 Score=36.13 Aligned_cols=7 Identities=29% Similarity=1.118 Sum_probs=3.4
Q ss_pred CCCCCCH
Q 006327 336 VPPHWKE 342 (650)
Q Consensus 336 Lp~~~t~ 342 (650)
|+++|-.
T Consensus 405 LHPSWeA 411 (432)
T PF09073_consen 405 LHPSWEA 411 (432)
T ss_pred CCccHHH
Confidence 5555443
No 273
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.54 E-value=1e+02 Score=25.24 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=40.6
Q ss_pred CCCcCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc
Q 006327 157 GLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (650)
Q Consensus 157 nLp~~~teedL~~~F~~-~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l 212 (650)
-....++..+|++.+++ || .|..|..+.-+ ....-|||.+.....|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 35789999999999998 66 67777776543 34457999999988888776543
No 274
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=36.20 E-value=22 Score=38.49 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=9.7
Q ss_pred eEEEEEeCHHHHHHHHHh
Q 006327 194 YAFVKFANKEHAKRALTE 211 (650)
Q Consensus 194 ~afV~F~~~e~A~~Al~~ 211 (650)
+-.=.|...+.|-|..+.
T Consensus 211 W~HDrF~e~eQaPKSr~e 228 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSRKE 228 (694)
T ss_pred cccccchhhhcCchHHHH
Confidence 344456666666555444
No 275
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=36.00 E-value=1e+02 Score=33.91 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=3.9
Q ss_pred HHHHHhCCCe
Q 006327 385 ACINAINNKE 394 (650)
Q Consensus 385 ~Ai~~lng~~ 394 (650)
+.++.+-+..
T Consensus 358 ~~ie~~l~~~ 367 (456)
T PRK10590 358 RDIEKLLKKE 367 (456)
T ss_pred HHHHHHhcCC
Confidence 3344443333
No 276
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=35.77 E-value=23 Score=33.97 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.8
Q ss_pred Ceeeeee
Q 006327 29 PALVEVA 35 (650)
Q Consensus 29 ~v~vD~a 35 (650)
++.|+.-
T Consensus 178 pLnv~e~ 184 (303)
T COG5129 178 PLNVREH 184 (303)
T ss_pred ccchHHH
Confidence 4444433
No 277
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.28 E-value=90 Score=23.83 Aligned_cols=18 Identities=22% Similarity=0.667 Sum_probs=14.8
Q ss_pred HHHHHHHhccCCeEEEEE
Q 006327 165 EDVRKVFERIGEVIEVRL 182 (650)
Q Consensus 165 edL~~~F~~~G~V~~v~l 182 (650)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 479999999999865555
No 278
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=1.6e+02 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHHHhcccCCeeEEEE
Q 006327 343 NQIRDQIKGYGDVIRIVL 360 (650)
Q Consensus 343 ~~l~~~F~~~G~i~~v~i 360 (650)
+.|-.+=+-||.|.++.+
T Consensus 89 ~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhcchhhhcccccccEE
Confidence 333333344566655444
No 279
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=1.1e+02 Score=31.91 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=14.9
Q ss_pred cccchhhhhccCCccccCC
Q 006327 4 AKFSEDKVSNYDNKERLGD 22 (650)
Q Consensus 4 ~~~~~~~~~~~n~~~~~gr 22 (650)
++.+|.++...||..-.|-
T Consensus 259 k~paedG~~de~n~ea~g~ 277 (520)
T KOG4434|consen 259 KKPAEDGGDDENNLEASGA 277 (520)
T ss_pred hCchhhCCCcccchhccCC
Confidence 4567888888888877777
No 280
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.59 E-value=52 Score=34.57 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEEecCCC--CCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~~d~~t--g~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
.-..|.|.+||...|+++|.+....|-. |....+...... ....+.|||.|...++...-....++.++.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4578999999999999999988877642 333333321111 223578999999999988877777776543
No 281
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=31.13 E-value=63 Score=32.75 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=7.4
Q ss_pred CcCCCccHHHHHHHH
Q 006327 237 NICNTWTKEAIKQKL 251 (650)
Q Consensus 237 nLp~~~te~~l~~~F 251 (650)
+|-..+|.....++.
T Consensus 119 GLEg~ltD~~a~~iI 133 (271)
T COG1512 119 GLEGVLTDAQAGRII 133 (271)
T ss_pred CcccccChHHHHHHH
Confidence 455555555444443
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.23 E-value=23 Score=44.47 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=14.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHhC
Q 006327 370 KDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 370 ~G~afV~F~~~~~A~~Ai~~ln 391 (650)
.|+..+-|++..-+.+|+..|.
T Consensus 4408 s~~~~la~etl~lvtkals~le 4429 (4600)
T COG5271 4408 SGSTVLALETLALVTKALSLLE 4429 (4600)
T ss_pred cCceeeehHHHHHHHHHHHHHh
Confidence 4556667777777777776553
No 283
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.86 E-value=24 Score=37.13 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=52.2
Q ss_pred CCCEEEEcCCCcCCCHH--------HHHHHHhc--cCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHH
Q 006327 149 KEHEIFIGGLDRDATQE--------DVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210 (650)
Q Consensus 149 ~~~tlfV~nLp~~~tee--------dL~~~F~~--~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~ 210 (650)
..+.+|+.+.....+.. ++...|.. .+.+..|.+.++.....++|..|++|.....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888887766554 89999999 6788999998887778899999999999999999884
No 284
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=1.3e+02 Score=31.70 Aligned_cols=80 Identities=9% Similarity=0.156 Sum_probs=56.5
Q ss_pred cccceeeeecCCCCC-CCHHHHHHHhccc----CCeeEEEEeecCC----------------------------------
Q 006327 325 MAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNMS---------------------------------- 365 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~---------------------------------- 365 (650)
...+++|-|-||.|+ +...+|.-+|+.| |.|..|.|....-
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345689999999994 7888998888765 5666666543210
Q ss_pred ------CC------Ccc-------------------cEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 366 ------TA------KRK-------------------DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 366 ------~~------~~~-------------------G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
-| .-+ =||.|+|.+...+......++|.++......+.+
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 00 012 2789999999999999999999988865544333
No 285
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.14 E-value=13 Score=40.49 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=49.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (650)
..+.|||+|+++.++-++|..+|+.+--+..+.+.....-..-.-++.|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4578999999999999999999999866666655433222233446789998666666666666765543
No 286
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=27.88 E-value=73 Score=28.77 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=54.4
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCC-ccccccceeeeecCCCCC-CCHHHHHHHhcccC
Q 006327 276 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYG 353 (650)
Q Consensus 276 G~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~-~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G 353 (650)
++..+.|.+.+++.+++. .....+. +..+.+..-.+..... ........-|.|.|||.. .+++-|+.+.+.+|
T Consensus 56 ~~fl~~F~~~~d~~~vl~---~~p~~~~--~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLK---GGPWNFN--GHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CeEEEEEEeccceeEEEe---ccccccc--ccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 788999999999999875 2222222 3444444333322211 111223345889999996 78899999999999
Q ss_pred CeeEEEEee
Q 006327 354 DVIRIVLAR 362 (650)
Q Consensus 354 ~i~~v~i~~ 362 (650)
.+..+....
T Consensus 131 ~~i~vD~~t 139 (153)
T PF14111_consen 131 EPIEVDENT 139 (153)
T ss_pred CeEEEEcCC
Confidence 999887743
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.88 E-value=1.8e+02 Score=22.73 Aligned_cols=61 Identities=21% Similarity=0.170 Sum_probs=38.7
Q ss_pred ceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC-CCcceeCCcCCCccHHHHHHHHhhcC
Q 006327 193 GYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYG 255 (650)
Q Consensus 193 G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~-~~~l~v~nLp~~~te~~l~~~F~~~G 255 (650)
.+.+|.|.+..+|.+|-+.|+..-+..+.+-+...-. .+.+-|. ++ ....+.+.++++..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCC
Confidence 3689999999999999998887666555544433322 2222222 11 145667777777766
No 288
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=27.61 E-value=47 Score=37.26 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.2
Q ss_pred CCEEEEcCCC
Q 006327 150 EHEIFIGGLD 159 (650)
Q Consensus 150 ~~tlfV~nLp 159 (650)
..+||-.-..
T Consensus 295 ~Y~vfTt~fD 304 (600)
T TIGR01651 295 DYKVFTTAFD 304 (600)
T ss_pred cceecchhhh
Confidence 3444444333
No 289
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.94 E-value=48 Score=37.16 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.0
Q ss_pred HHHHHHHhc
Q 006327 342 ENQIRDQIK 350 (650)
Q Consensus 342 ~~~l~~~F~ 350 (650)
+.+|+.+..
T Consensus 542 ~~hLr~vi~ 550 (600)
T TIGR01651 542 ERHLRAVIE 550 (600)
T ss_pred HHHHHHHHH
Confidence 344554443
No 290
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.84 E-value=1e+02 Score=32.53 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=43.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
-.+.|-|-++|...-.+||...|+.|+.- -.|.++-+. .||-.|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 34789999999998889999999988643 345554442 69999999999999985
No 291
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.73 E-value=2e+02 Score=23.08 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=40.8
Q ss_pred EEEcCCCcCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHh
Q 006327 153 IFIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (650)
Q Consensus 153 lfV~nLp~~~teedL~~~F~~-~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~ 211 (650)
-|+=.+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 344456889999999999988 66 67777765543 3445699999888888776544
No 292
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=25.89 E-value=42 Score=41.91 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=3.8
Q ss_pred eEEEEEec
Q 006327 259 VENINLVS 266 (650)
Q Consensus 259 i~~i~i~~ 266 (650)
|..|.+..
T Consensus 397 i~~i~v~p 404 (2849)
T PTZ00415 397 IAAITIEP 404 (2849)
T ss_pred eEEEEEee
Confidence 44554443
No 293
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=21 Score=39.83 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHhccCCeEEEEE
Q 006327 165 EDVRKVFERIGEVIEVRL 182 (650)
Q Consensus 165 edL~~~F~~~G~V~~v~l 182 (650)
.-+++-|++|=-+++++-
T Consensus 465 ~~ArerfqkYRGLksl~T 482 (754)
T KOG1980|consen 465 ESARERFQKYRGLKSLRT 482 (754)
T ss_pred hHHHHHHHHhcccccccc
Confidence 356777888766666554
No 294
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=24.95 E-value=4.5e+02 Score=30.72 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=6.4
Q ss_pred eEEEEEeCHHHHHHHH
Q 006327 194 YAFVKFANKEHAKRAL 209 (650)
Q Consensus 194 ~afV~F~~~e~A~~Al 209 (650)
.|.+-|-+..-...|+
T Consensus 633 IalLPFiDe~rLl~a~ 648 (931)
T KOG2044|consen 633 IALLPFIDERRLLSAV 648 (931)
T ss_pred cccccccchhhHHHHH
Confidence 3444444443333333
No 295
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.83 E-value=56 Score=31.93 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=31.2
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEE
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRL 182 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l 182 (650)
....+..+||+-|||..+|++.|..+.+++|-+..+.+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34457789999999999999999999999986554443
No 296
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=54 Score=35.88 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.6
Q ss_pred hHHhhhcCCCCC
Q 006327 40 IIEAIFQYKEET 51 (650)
Q Consensus 40 ~~~~~~~~~~~~ 51 (650)
.|.++.+-+.+-
T Consensus 690 iw~alv~srp~~ 701 (821)
T COG5593 690 IWSALVKSRPDV 701 (821)
T ss_pred HHHHHhccCCcc
Confidence 455555444333
No 297
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=23.43 E-value=51 Score=39.04 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=4.5
Q ss_pred cceEEEEEe
Q 006327 192 KGYAFVKFA 200 (650)
Q Consensus 192 ~G~afV~F~ 200 (650)
+.+-.|.|-
T Consensus 931 ~k~y~ltFi 939 (1096)
T TIGR00927 931 RKFFVITFL 939 (1096)
T ss_pred cceeeehHH
Confidence 344455554
No 298
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.56 E-value=38 Score=31.71 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=46.2
Q ss_pred CEEEEcCCCcCCC-H----HHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC-cCC
Q 006327 151 HEIFIGGLDRDAT-Q----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-RCG 223 (650)
Q Consensus 151 ~tlfV~nLp~~~t-e----edL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~-~i~ 223 (650)
.++++.+|...+- + ....++|.+|-+.....++ ++.+..-|.|.+++.|..|...++...+.|+ .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4577777775432 1 2345566666655444443 3466788899999999999999999988888 443
No 299
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=22.14 E-value=2.9e+02 Score=23.87 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc--ccCCcCCCCCCCCCCccee
Q 006327 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCGTAPSEDNDTLFV 235 (650)
Q Consensus 158 Lp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~--l~g~~i~v~~~~~~~~l~v 235 (650)
||+-+. .|-++|+.=|+|.+|..+..-.+ ..||-.+++.. +.|. |.+........++|
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 566554 58899999999999987654221 12222233321 2232 33333334444444
Q ss_pred CCc---------CCCccHHHHHHHHhhcCC-cceEEEEEeccccccCCCcceEEEEecCH
Q 006327 236 GNI---------CNTWTKEAIKQKLKDYGV-EGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (650)
Q Consensus 236 ~nL---------p~~~te~~l~~~F~~~G~-~~i~~i~i~~d~~~~g~srG~aFV~F~~~ 285 (650)
.+. |..+|-.+++++|..--. .+|+.-.+.++-- ...+-..||..|...
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGL-P~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGL-PEGSYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCC-CCCceEEEEEEeccc
Confidence 333 456899999999975321 1144444444311 112223567666554
No 300
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=1e+02 Score=28.58 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=3.1
Q ss_pred ccccCC
Q 006327 17 KERLGD 22 (650)
Q Consensus 17 ~~~~gr 22 (650)
..|++|
T Consensus 104 ~~i~i~ 109 (227)
T KOG3241|consen 104 DQILIR 109 (227)
T ss_pred HHhhhc
Confidence 345555
No 301
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=80 Score=36.48 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.4
Q ss_pred EEEEEe
Q 006327 195 AFVKFA 200 (650)
Q Consensus 195 afV~F~ 200 (650)
.+|.+.
T Consensus 772 ~~i~~~ 777 (968)
T KOG1060|consen 772 THIEEK 777 (968)
T ss_pred ccCcch
Confidence 344443
No 302
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=30 Score=35.90 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.6
Q ss_pred CCEEEE
Q 006327 150 EHEIFI 155 (650)
Q Consensus 150 ~~tlfV 155 (650)
..||+.
T Consensus 398 tHtVh~ 403 (520)
T KOG4434|consen 398 THTVHS 403 (520)
T ss_pred ceeecc
Confidence 344443
Done!