Query 006327
Match_columns 650
No_of_seqs 562 out of 3709
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.6E-41 1.2E-45 346.0 26.8 243 148-407 20-263 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-41 4.7E-46 350.5 23.4 249 146-407 37-290 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.6E-30 5.5E-35 254.9 14.5 180 149-337 14-201 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 4.1E-29 1.4E-33 241.3 17.9 176 145-408 8-183 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 2.9E-28 9.8E-33 228.5 19.6 165 231-406 1-165 (166)
6 4f02_A Polyadenylate-binding p 100.0 1.6E-28 5.5E-33 240.6 18.7 168 227-406 12-179 (213)
7 2qfj_A FBP-interacting repress 100.0 5.1E-28 1.7E-32 237.3 20.0 175 230-411 28-208 (216)
8 1b7f_A Protein (SXL-lethal pro 100.0 9E-28 3.1E-32 225.7 19.6 165 229-405 2-168 (168)
9 2qfj_A FBP-interacting repress 100.0 4.7E-28 1.6E-32 237.6 17.7 165 149-320 27-208 (216)
10 1fxl_A Paraneoplastic encephal 100.0 1.4E-27 4.9E-32 223.9 19.7 163 230-404 2-166 (167)
11 3nmr_A Cugbp ELAV-like family 100.0 7.8E-28 2.7E-32 227.7 17.2 162 149-315 2-175 (175)
12 1b7f_A Protein (SXL-lethal pro 100.0 7.5E-28 2.6E-32 226.3 16.7 161 149-314 2-168 (168)
13 1fxl_A Paraneoplastic encephal 100.0 1.6E-27 5.4E-32 223.6 18.4 158 150-314 2-167 (167)
14 2cjk_A Nuclear polyadenylated 99.9 8.5E-28 2.9E-32 225.8 14.3 159 149-317 2-166 (167)
15 3md3_A Nuclear and cytoplasmic 99.9 1.7E-27 5.7E-32 223.2 15.9 157 151-315 1-165 (166)
16 3nmr_A Cugbp ELAV-like family 99.9 7E-27 2.4E-31 221.1 19.1 168 229-405 2-174 (175)
17 3smz_A Protein raver-1, ribonu 99.9 3.4E-27 1.2E-31 241.8 16.4 161 151-319 96-266 (284)
18 2cjk_A Nuclear polyadenylated 99.9 2.5E-27 8.7E-32 222.5 12.3 163 229-406 2-164 (167)
19 3pgw_A U1-A; protein-RNA compl 99.9 9.8E-26 3.4E-30 230.7 22.3 250 146-406 5-281 (282)
20 2g4b_A Splicing factor U2AF 65 99.9 3.9E-26 1.3E-30 215.5 17.3 160 229-405 3-171 (172)
21 3tyt_A Heterogeneous nuclear r 99.9 7.1E-26 2.4E-30 219.7 17.9 157 229-399 3-194 (205)
22 3tyt_A Heterogeneous nuclear r 99.9 3.9E-26 1.3E-30 221.5 15.6 156 149-314 3-204 (205)
23 2ghp_A U4/U6 snRNA-associated 99.9 2.2E-26 7.6E-31 236.7 14.2 160 150-317 117-291 (292)
24 2g4b_A Splicing factor U2AF 65 99.9 6.3E-26 2.2E-30 214.1 14.9 153 148-314 2-171 (172)
25 3sde_A Paraspeckle component 1 99.9 5E-26 1.7E-30 230.0 15.0 162 147-318 19-180 (261)
26 2yh0_A Splicing factor U2AF 65 99.9 1.8E-25 6.2E-30 216.0 17.3 167 229-407 3-193 (198)
27 1fje_B Nucleolin RBD12, protei 99.9 6.6E-26 2.2E-30 214.7 13.2 166 224-406 7-172 (175)
28 2yh0_A Splicing factor U2AF 65 99.9 1.7E-25 5.9E-30 216.1 14.7 157 149-319 3-196 (198)
29 1fje_B Nucleolin RBD12, protei 99.9 1.9E-26 6.7E-31 218.4 7.4 158 146-317 9-174 (175)
30 2adc_A Polypyrimidine tract-bi 99.9 1.3E-24 4.4E-29 215.3 20.4 165 225-406 29-226 (229)
31 2adc_A Polypyrimidine tract-bi 99.9 1.3E-24 4.6E-29 215.1 18.6 155 147-317 31-228 (229)
32 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-24 5.2E-29 209.7 16.1 160 230-406 3-195 (198)
33 3sde_A Paraspeckle component 1 99.9 2.5E-24 8.5E-29 217.5 17.4 156 228-408 20-179 (261)
34 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-24 5E-29 209.8 14.1 152 149-317 2-197 (198)
35 2kn4_A Immunoglobulin G-bindin 99.8 5E-20 1.7E-24 171.2 16.9 145 261-408 2-150 (158)
36 4f25_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 155.5 8.1 96 149-246 4-113 (115)
37 3pgw_S U1-70K; protein-RNA com 99.8 4.3E-19 1.5E-23 191.0 8.0 81 327-407 101-181 (437)
38 2i2y_A Fusion protein consists 99.8 3.2E-18 1.1E-22 157.5 12.1 126 271-406 9-146 (150)
39 4fxv_A ELAV-like protein 1; RN 99.7 5.4E-18 1.9E-22 144.0 10.6 80 327-406 18-97 (99)
40 4fxv_A ELAV-like protein 1; RN 99.7 3.8E-18 1.3E-22 144.9 9.0 82 148-229 17-98 (99)
41 2kn4_A Immunoglobulin G-bindin 99.7 1.3E-17 4.3E-22 154.9 12.5 134 179-321 2-154 (158)
42 3q2s_C Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 168.2 7.7 81 327-407 67-149 (229)
43 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.1E-17 7.1E-22 153.1 11.8 82 326-407 37-118 (156)
44 3s8s_A Histone-lysine N-methyl 99.7 4.1E-17 1.4E-21 141.3 10.7 80 327-406 5-84 (110)
45 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6.2E-22 149.3 8.0 122 277-408 6-127 (135)
46 4f25_A Polyadenylate-binding p 99.7 3E-17 1E-21 143.6 9.0 106 230-344 5-113 (115)
47 3ex7_B RNA-binding protein 8A; 99.7 9.9E-17 3.4E-21 142.8 11.4 83 326-408 20-102 (126)
48 2lkz_A RNA-binding protein 5; 99.7 2.6E-17 8.9E-22 138.2 6.9 80 327-406 8-93 (95)
49 2cqd_A RNA-binding region cont 99.7 1.9E-16 6.4E-21 138.8 12.6 85 326-411 15-99 (116)
50 3s8s_A Histone-lysine N-methyl 99.7 6E-17 2E-21 140.3 9.2 81 148-228 4-84 (110)
51 2lxi_A RNA-binding protein 10; 99.7 1.8E-17 6E-22 138.5 5.7 79 328-406 1-81 (91)
52 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.8E-21 149.6 11.2 127 280-408 11-152 (165)
53 2lxi_A RNA-binding protein 10; 99.7 1.3E-17 4.4E-22 139.4 4.3 82 150-231 1-84 (91)
54 1whw_A Hypothetical protein ri 99.7 2.8E-16 9.4E-21 133.6 12.0 82 327-408 7-88 (99)
55 2fy1_A RNA-binding motif prote 99.7 3.4E-16 1.1E-20 137.1 12.6 80 327-407 6-85 (116)
56 2dnz_A Probable RNA-binding pr 99.7 3.3E-16 1.1E-20 132.0 12.0 80 327-406 4-83 (95)
57 2lkz_A RNA-binding protein 5; 99.7 2.6E-17 9E-22 138.2 4.9 83 147-229 6-94 (95)
58 3lqv_A PRE-mRNA branch site pr 99.7 8.8E-17 3E-21 140.7 8.2 104 148-256 6-109 (115)
59 2dgs_A DAZ-associated protein 99.7 5.1E-16 1.8E-20 131.9 12.7 80 327-407 9-88 (99)
60 2dgo_A Cytotoxic granule-assoc 99.7 8.8E-16 3E-20 134.3 14.5 83 326-408 13-95 (115)
61 2dnm_A SRP46 splicing factor; 99.7 2E-16 6.9E-21 135.5 10.1 82 326-407 11-92 (103)
62 3md1_A Nuclear and cytoplasmic 99.7 3.4E-16 1.2E-20 128.3 11.1 79 329-407 2-80 (83)
63 3p5t_L Cleavage and polyadenyl 99.7 5.7E-17 2E-21 135.2 6.4 80 329-408 2-83 (90)
64 2cq0_A Eukaryotic translation 99.7 2.9E-16 9.8E-21 134.5 11.0 82 326-407 13-94 (103)
65 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-16 1.1E-20 133.8 11.3 82 327-408 11-92 (102)
66 2cpz_A CUG triplet repeat RNA- 99.7 3.9E-16 1.3E-20 136.6 11.7 82 327-408 24-105 (115)
67 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-16 1.3E-20 129.2 11.0 81 327-407 5-85 (87)
68 1p27_B RNA-binding protein 8A; 99.7 6.1E-16 2.1E-20 133.2 12.1 83 325-407 20-102 (106)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.1E-16 1.1E-20 134.0 10.0 81 327-407 11-91 (102)
70 1x5u_A Splicing factor 3B subu 99.7 5.7E-16 2E-20 133.1 11.6 82 326-407 13-94 (105)
71 1u6f_A Tcubp1, RNA-binding pro 99.7 7.2E-16 2.5E-20 139.7 12.7 82 326-407 40-121 (139)
72 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.6E-16 1.2E-20 128.7 9.8 79 327-405 6-84 (85)
73 2d9p_A Polyadenylate-binding p 99.7 8.2E-16 2.8E-20 131.6 12.4 81 326-408 13-93 (103)
74 3ns6_A Eukaryotic translation 99.6 1.7E-16 5.7E-21 135.1 7.8 80 328-407 6-92 (100)
75 2dnz_A Probable RNA-binding pr 99.6 4.4E-16 1.5E-20 131.2 10.3 82 148-229 3-84 (95)
76 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.4E-21 133.1 6.9 79 151-229 2-82 (90)
77 1x5t_A Splicing factor 3B subu 99.6 3.4E-16 1.2E-20 132.1 9.5 80 327-406 4-84 (96)
78 2cph_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 131.8 12.8 82 326-407 13-96 (107)
79 1x4h_A RNA-binding protein 28; 99.6 8.1E-16 2.8E-20 133.6 12.0 82 326-407 13-100 (111)
80 2la6_A RNA-binding protein FUS 99.6 7.1E-16 2.4E-20 131.0 11.4 80 326-405 11-98 (99)
81 2cpf_A RNA binding motif prote 99.6 3.6E-16 1.2E-20 132.5 9.5 82 327-408 4-88 (98)
82 2x1f_A MRNA 3'-END-processing 99.6 1.9E-16 6.4E-21 133.8 7.4 86 149-234 1-86 (96)
83 2cqc_A Arginine/serine-rich sp 99.6 6.9E-16 2.4E-20 129.9 10.9 81 326-406 13-93 (95)
84 2i2y_A Fusion protein consists 99.6 2.9E-16 9.9E-21 144.3 9.2 117 189-318 10-149 (150)
85 3md1_A Nuclear and cytoplasmic 99.6 4E-16 1.4E-20 127.8 9.1 81 150-230 1-81 (83)
86 2dng_A Eukaryotic translation 99.6 1.1E-15 3.8E-20 130.8 12.1 80 326-407 13-92 (103)
87 2e5h_A Zinc finger CCHC-type a 99.6 8.2E-16 2.8E-20 129.2 10.9 79 327-405 15-93 (94)
88 2do4_A Squamous cell carcinoma 99.6 1.4E-15 4.8E-20 129.4 12.4 79 327-406 16-94 (100)
89 2dnh_A Bruno-like 5, RNA bindi 99.6 1.5E-15 5.1E-20 130.5 12.6 81 327-408 14-97 (105)
90 2x1f_A MRNA 3'-END-processing 99.6 7.1E-16 2.4E-20 130.2 10.3 80 328-407 2-81 (96)
91 1x5u_A Splicing factor 3B subu 99.6 4.8E-16 1.6E-20 133.6 9.4 85 146-230 11-95 (105)
92 3q2s_C Cleavage and polyadenyl 99.6 1.9E-16 6.5E-21 155.8 7.8 80 149-228 67-148 (229)
93 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.4E-16 1.2E-20 129.5 8.0 80 149-228 5-84 (87)
94 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.4E-16 1.1E-20 129.0 7.9 80 148-227 5-84 (85)
95 1whw_A Hypothetical protein ri 99.6 4.3E-16 1.5E-20 132.4 8.6 85 147-231 5-89 (99)
96 2cq0_A Eukaryotic translation 99.6 3E-16 1E-20 134.4 7.7 85 146-230 11-95 (103)
97 2dnm_A SRP46 splicing factor; 99.6 3E-16 1E-20 134.4 7.6 84 146-229 9-92 (103)
98 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-15 4E-20 131.4 11.3 81 327-407 12-95 (106)
99 1oo0_B CG8781-PA, drosophila Y 99.6 1.4E-15 4.6E-20 131.9 11.8 83 325-407 23-105 (110)
100 2jrs_A RNA-binding protein 39; 99.6 1.1E-15 3.8E-20 131.9 11.0 82 325-406 23-104 (108)
101 2dgs_A DAZ-associated protein 99.6 7.6E-16 2.6E-20 130.8 9.9 83 147-230 7-89 (99)
102 2do0_A HnRNP M, heterogeneous 99.6 2.6E-15 8.8E-20 131.1 13.5 80 327-407 14-93 (114)
103 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.7E-20 131.1 10.9 83 146-229 5-89 (104)
104 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.5E-16 1.2E-20 146.1 8.5 84 145-228 67-150 (165)
105 1wi8_A EIF-4B, eukaryotic tran 99.6 1.5E-15 5.3E-20 130.2 11.7 79 326-406 13-92 (104)
106 3ns6_A Eukaryotic translation 99.6 1.7E-16 5.9E-21 135.1 5.6 80 149-228 5-91 (100)
107 2dgo_A Cytotoxic granule-assoc 99.6 6.2E-16 2.1E-20 135.2 9.3 85 146-230 11-95 (115)
108 1s79_A Lupus LA protein; RRM, 99.6 5.5E-16 1.9E-20 132.4 8.5 80 327-408 10-89 (103)
109 2dhg_A TRNA selenocysteine ass 99.6 9E-16 3.1E-20 131.6 9.9 79 327-406 8-88 (104)
110 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-15 4.5E-20 128.6 10.5 79 327-408 8-90 (96)
111 2jrs_A RNA-binding protein 39; 99.6 8.3E-16 2.8E-20 132.7 9.4 85 146-230 22-106 (108)
112 1x5s_A Cold-inducible RNA-bind 99.6 4.6E-16 1.6E-20 133.0 7.7 83 147-229 9-91 (102)
113 2cpe_A RNA-binding protein EWS 99.6 1E-15 3.6E-20 133.4 10.1 81 326-406 13-101 (113)
114 2wbr_A GW182, gawky, LD47780P; 99.6 5.6E-16 1.9E-20 125.3 7.7 73 149-227 6-78 (89)
115 1x4e_A RNA binding motif, sing 99.6 5.3E-16 1.8E-20 127.8 7.8 81 148-228 3-83 (85)
116 2cpf_A RNA binding motif prote 99.6 6E-16 2.1E-20 131.2 8.3 83 148-230 3-88 (98)
117 2cqc_A Arginine/serine-rich sp 99.6 4.9E-16 1.7E-20 130.9 7.6 82 147-228 12-93 (95)
118 2cq3_A RNA-binding protein 9; 99.6 3.5E-15 1.2E-19 127.7 13.1 82 325-408 12-93 (103)
119 2cpz_A CUG triplet repeat RNA- 99.6 6E-16 2.1E-20 135.4 8.4 84 147-230 22-105 (115)
120 1s79_A Lupus LA protein; RRM, 99.6 5.3E-16 1.8E-20 132.5 7.8 78 148-227 9-86 (103)
121 3ulh_A THO complex subunit 4; 99.6 1.6E-15 5.6E-20 130.7 11.0 80 326-406 27-106 (107)
122 2div_A TRNA selenocysteine ass 99.6 1.1E-15 3.8E-20 129.8 9.6 82 148-229 7-93 (99)
123 1x5t_A Splicing factor 3B subu 99.6 4.9E-16 1.7E-20 131.2 7.3 82 148-229 3-85 (96)
124 1p27_B RNA-binding protein 8A; 99.6 8.3E-16 2.8E-20 132.3 8.8 83 146-228 19-101 (106)
125 2do4_A Squamous cell carcinoma 99.6 8E-16 2.8E-20 130.9 8.5 83 146-229 13-95 (100)
126 2div_A TRNA selenocysteine ass 99.6 1E-15 3.5E-20 130.0 9.2 79 327-405 8-91 (99)
127 1x4h_A RNA-binding protein 28; 99.6 8E-16 2.7E-20 133.6 8.6 85 146-230 11-101 (111)
128 2dgu_A Heterogeneous nuclear r 99.6 3E-15 1E-19 128.1 12.1 76 325-408 8-83 (103)
129 2cph_A RNA binding motif prote 99.6 9.8E-16 3.4E-20 132.1 9.1 87 146-232 11-99 (107)
130 2kxn_B Transformer-2 protein h 99.6 1.1E-15 3.7E-20 136.4 9.5 85 146-230 42-126 (129)
131 2e5h_A Zinc finger CCHC-type a 99.6 5.9E-16 2E-20 130.1 7.4 81 147-227 13-93 (94)
132 2hgn_A Heterogeneous nuclear r 99.6 2.1E-16 7.3E-21 142.2 4.9 77 326-405 44-120 (139)
133 2dgp_A Bruno-like 4, RNA bindi 99.6 7.7E-16 2.6E-20 132.5 8.2 85 146-230 9-96 (106)
134 2fy1_A RNA-binding motif prote 99.6 1.3E-15 4.4E-20 133.4 9.5 81 148-229 5-85 (116)
135 2hvz_A Splicing factor, argini 99.6 6.4E-16 2.2E-20 131.8 7.4 84 151-239 1-100 (101)
136 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.5E-20 129.3 9.2 82 146-227 9-98 (99)
137 4a8x_A RNA-binding protein wit 99.6 1.5E-15 5.3E-20 125.8 9.3 79 328-406 4-83 (88)
138 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 127.0 8.4 79 150-229 6-84 (89)
139 1x4b_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 132.2 10.4 81 325-406 24-104 (116)
140 2ywk_A Putative RNA-binding pr 99.6 1.7E-15 5.9E-20 127.5 9.6 78 327-405 15-92 (95)
141 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.5E-15 1.5E-19 127.0 12.3 79 327-407 14-92 (103)
142 2dnh_A Bruno-like 5, RNA bindi 99.6 1.8E-15 6.1E-20 130.0 9.8 81 148-229 13-96 (105)
143 2khc_A Testis-specific RNP-typ 99.6 1.7E-15 5.8E-20 133.1 9.8 80 326-405 38-117 (118)
144 2cqp_A RNA-binding protein 12; 99.6 1.2E-15 4.1E-20 129.3 8.5 80 327-406 14-93 (98)
145 3s7r_A Heterogeneous nuclear r 99.6 9.9E-16 3.4E-20 126.8 7.8 80 146-226 7-86 (87)
146 3s7r_A Heterogeneous nuclear r 99.6 2.2E-15 7.6E-20 124.6 9.9 78 327-405 10-87 (87)
147 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.5E-16 1.5E-20 133.0 5.8 83 147-229 9-91 (102)
148 2kxn_B Transformer-2 protein h 99.6 1.8E-15 6.1E-20 135.0 9.9 81 327-407 45-125 (129)
149 2ywk_A Putative RNA-binding pr 99.6 1.2E-15 4.2E-20 128.4 8.3 82 146-228 12-93 (95)
150 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.3E-15 4.6E-20 140.8 9.3 85 145-229 34-118 (156)
151 3ucg_A Polyadenylate-binding p 99.6 1.9E-15 6.4E-20 125.6 9.3 78 328-406 6-83 (89)
152 2mss_A Protein (musashi1); RNA 99.6 8.1E-16 2.8E-20 123.4 6.8 74 330-404 1-74 (75)
153 1p1t_A Cleavage stimulation fa 99.6 1E-15 3.5E-20 131.3 7.8 82 326-407 6-87 (104)
154 3n9u_C Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 139.6 9.9 81 327-407 54-136 (156)
155 2wbr_A GW182, gawky, LD47780P; 99.6 1.5E-15 5E-20 122.9 8.1 73 328-406 7-79 (89)
156 2ek1_A RNA-binding protein 12; 99.6 8.7E-16 3E-20 129.4 7.1 79 327-405 14-92 (95)
157 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.2E-20 129.1 9.1 77 327-406 14-90 (102)
158 2dgv_A HnRNP M, heterogeneous 99.6 2.7E-15 9.1E-20 125.5 9.9 79 327-407 7-85 (92)
159 2d9p_A Polyadenylate-binding p 99.6 1.4E-15 4.9E-20 130.1 8.4 81 147-229 12-92 (103)
160 1sjq_A Polypyrimidine tract-bi 99.6 2.5E-15 8.6E-20 127.5 9.8 77 147-229 13-91 (105)
161 2m2b_A RNA-binding protein 10; 99.6 1E-15 3.5E-20 137.1 7.8 81 326-407 21-107 (131)
162 2dh8_A DAZ-associated protein 99.6 1.5E-15 5.1E-20 130.5 8.5 80 326-406 14-93 (105)
163 2cqd_A RNA-binding region cont 99.6 1.4E-15 4.8E-20 133.2 8.5 83 146-229 13-95 (116)
164 2khc_A Testis-specific RNP-typ 99.6 1.1E-15 3.6E-20 134.4 7.7 81 147-227 37-117 (118)
165 2kt5_A RNA and export factor-b 99.6 4.6E-15 1.6E-19 131.5 11.9 87 325-412 32-118 (124)
166 2cpe_A RNA-binding protein EWS 99.6 1.1E-15 3.9E-20 133.1 7.7 85 146-230 11-103 (113)
167 2mss_A Protein (musashi1); RNA 99.6 8.2E-16 2.8E-20 123.4 6.2 75 152-227 1-75 (75)
168 2dgv_A HnRNP M, heterogeneous 99.6 4.1E-15 1.4E-19 124.4 10.7 81 148-230 6-86 (92)
169 2dng_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 129.8 8.3 81 147-229 12-92 (103)
170 1x4c_A Splicing factor, argini 99.6 5.6E-15 1.9E-19 127.6 11.8 75 326-407 13-92 (108)
171 1x4d_A Matrin 3; structural ge 99.6 2.7E-15 9.3E-20 127.2 9.5 76 327-408 14-92 (102)
172 3n9u_C Cleavage and polyadenyl 99.6 1.6E-15 5.5E-20 139.8 8.8 80 149-228 54-135 (156)
173 2dis_A Unnamed protein product 99.6 3.6E-15 1.2E-19 129.0 10.4 84 327-410 7-94 (109)
174 1x4a_A Splicing factor, argini 99.6 6.2E-15 2.1E-19 127.6 11.8 77 327-406 21-97 (109)
175 2dh8_A DAZ-associated protein 99.6 1.8E-15 6.3E-20 129.9 8.4 83 147-230 13-95 (105)
176 2krb_A Eukaryotic translation 99.6 2E-15 7E-20 123.0 8.1 73 150-224 1-80 (81)
177 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.4E-20 130.3 8.3 81 146-227 25-105 (107)
178 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-15 6.3E-20 129.7 8.0 80 148-229 13-93 (104)
179 2cq4_A RNA binding motif prote 99.6 2.3E-15 7.9E-20 131.4 8.7 80 327-407 24-103 (114)
180 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.5E-20 130.0 7.6 81 149-229 7-87 (104)
181 1oo0_B CG8781-PA, drosophila Y 99.6 1.4E-15 4.9E-20 131.8 7.4 84 145-228 21-104 (110)
182 1wg5_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 126.8 10.7 78 327-406 14-92 (104)
183 2cqg_A TDP-43, TAR DNA-binding 99.6 9.1E-15 3.1E-19 125.1 12.2 80 326-407 13-92 (103)
184 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.3E-15 4.4E-20 122.8 6.4 76 329-405 1-76 (77)
185 1sjq_A Polypyrimidine tract-bi 99.6 2.3E-15 7.8E-20 127.7 8.1 75 327-407 15-91 (105)
186 3ex7_B RNA-binding protein 8A; 99.6 2E-15 6.9E-20 134.3 8.2 83 146-228 18-100 (126)
187 2m2b_A RNA-binding protein 10; 99.6 1.2E-15 4E-20 136.8 6.5 81 149-230 22-108 (131)
188 2jwn_A Embryonic polyadenylate 99.6 3.5E-15 1.2E-19 132.4 9.5 79 327-406 35-113 (124)
189 2cpy_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 133.5 6.0 80 327-408 14-94 (114)
190 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.8E-15 2.7E-19 133.0 12.0 81 325-405 60-140 (140)
191 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.3E-16 2.8E-20 124.0 4.9 76 151-227 1-76 (77)
192 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.9E-15 6.7E-20 128.5 7.5 82 147-230 16-98 (100)
193 4a8x_A RNA-binding protein wit 99.6 1.5E-15 5.1E-20 125.9 6.5 80 149-228 3-83 (88)
194 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.7E-15 6E-20 128.8 7.1 80 325-406 16-96 (100)
195 1x4e_A RNA binding motif, sing 99.6 6.6E-16 2.3E-20 127.2 4.3 77 327-403 4-80 (85)
196 2nlw_A Eukaryotic translation 99.6 3.6E-15 1.2E-19 128.1 9.0 79 327-407 14-99 (105)
197 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 128.9 5.5 80 149-228 14-93 (95)
198 2dgw_A Probable RNA-binding pr 99.6 6.7E-15 2.3E-19 122.9 10.4 78 327-407 9-86 (91)
199 1wex_A Hypothetical protein (r 99.6 1E-14 3.5E-19 124.5 11.7 76 326-407 13-90 (104)
200 3r27_A HnRNP L, heterogeneous 99.6 4.2E-15 1.4E-19 124.8 9.0 74 327-406 20-95 (100)
201 2dnn_A RNA-binding protein 12; 99.6 5.2E-15 1.8E-19 127.5 9.7 77 327-406 15-91 (109)
202 2cq1_A PTB-like protein L; RRM 99.6 1.3E-14 4.6E-19 123.0 12.1 76 326-407 13-90 (101)
203 1u6f_A Tcubp1, RNA-binding pro 99.6 2.7E-15 9.3E-20 135.9 8.2 82 148-229 40-121 (139)
204 2rs2_A Musashi-1, RNA-binding 99.6 5.5E-15 1.9E-19 127.8 9.7 80 326-406 23-102 (109)
205 2ki2_A SS-DNA binding protein 99.6 9.5E-16 3.3E-20 127.7 4.7 81 329-410 2-82 (90)
206 2do0_A HnRNP M, heterogeneous 99.6 4.2E-15 1.4E-19 129.7 9.0 81 147-228 12-92 (114)
207 2cq3_A RNA-binding protein 9; 99.6 5.7E-15 2E-19 126.3 9.6 82 146-229 11-92 (103)
208 1x4d_A Matrin 3; structural ge 99.6 1.3E-15 4.4E-20 129.2 5.3 83 146-234 11-96 (102)
209 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.9E-20 129.2 6.1 79 147-228 12-90 (102)
210 2cqp_A RNA-binding protein 12; 99.6 1.4E-15 5E-20 128.8 5.5 82 148-229 13-94 (98)
211 1wel_A RNA-binding protein 12; 99.6 2.3E-15 7.7E-20 133.6 6.9 81 326-407 23-103 (124)
212 2cpi_A CCR4-NOT transcription 99.6 6.1E-15 2.1E-19 128.0 9.5 80 327-406 14-99 (111)
213 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.8E-20 127.3 4.6 79 151-230 2-80 (90)
214 1wg5_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 127.8 8.0 80 148-229 13-93 (104)
215 2krb_A Eukaryotic translation 99.6 2.5E-15 8.4E-20 122.6 6.4 72 329-402 2-80 (81)
216 2fc9_A NCL protein; structure 99.6 9.3E-15 3.2E-19 124.5 10.3 77 327-407 14-90 (101)
217 2cqi_A Nucleolysin TIAR; RNA r 99.6 5E-15 1.7E-19 126.7 8.5 82 146-229 11-92 (103)
218 2rs2_A Musashi-1, RNA-binding 99.6 3.2E-15 1.1E-19 129.3 7.3 82 147-229 22-103 (109)
219 1x4a_A Splicing factor, argini 99.6 7E-15 2.4E-19 127.2 9.4 81 147-230 19-99 (109)
220 1wf1_A RNA-binding protein RAL 99.6 1.2E-14 4.1E-19 125.9 10.8 92 305-406 6-98 (110)
221 2dnq_A RNA-binding protein 4B; 99.6 1.4E-14 4.9E-19 120.5 10.9 73 327-407 7-79 (90)
222 2db1_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 129.9 8.5 79 327-407 16-97 (118)
223 3beg_B Splicing factor, argini 99.6 8.1E-15 2.8E-19 128.1 9.6 66 327-399 15-80 (115)
224 2cqg_A TDP-43, TAR DNA-binding 99.6 6.9E-15 2.4E-19 125.8 8.9 83 146-230 11-93 (103)
225 2hgl_A HNRPF protein, heteroge 99.6 3.7E-15 1.3E-19 133.6 7.5 78 327-406 43-123 (136)
226 2cpj_A Non-POU domain-containi 99.6 4.5E-15 1.5E-19 126.0 7.6 86 146-237 11-96 (99)
227 2kt5_A RNA and export factor-b 99.6 5.7E-15 1.9E-19 131.0 8.5 83 148-231 33-115 (124)
228 2cpx_A Hypothetical protein FL 99.6 5E-15 1.7E-19 129.4 8.0 83 326-408 23-105 (115)
229 3r27_A HnRNP L, heterogeneous 99.6 5.4E-15 1.8E-19 124.1 7.7 79 145-229 16-96 (100)
230 2dgx_A KIAA0430 protein; RRM d 99.6 4E-15 1.4E-19 125.5 7.0 80 148-230 7-90 (96)
231 2ad9_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 125.9 10.6 75 327-407 30-106 (119)
232 2jvr_A Nucleolar protein 3; RN 99.6 5.4E-15 1.8E-19 127.6 7.7 76 327-406 27-103 (111)
233 1x5o_A RNA binding motif, sing 99.6 2E-14 7E-19 125.3 11.5 79 327-406 24-110 (114)
234 2dis_A Unnamed protein product 99.6 6.1E-15 2.1E-19 127.6 8.1 83 148-230 6-92 (109)
235 2cq4_A RNA binding motif prote 99.6 2.2E-15 7.5E-20 131.6 5.1 77 150-227 25-101 (114)
236 2err_A Ataxin-2-binding protei 99.5 8.3E-15 2.8E-19 126.7 8.6 80 325-406 26-105 (109)
237 2cpd_A Apobec-1 stimulating pr 99.5 2.9E-14 1E-18 120.9 11.9 76 323-406 10-87 (99)
238 1x4f_A Matrin 3; structural ge 99.5 7.4E-15 2.5E-19 126.4 8.2 78 327-410 24-104 (112)
239 2a3j_A U1 small nuclear ribonu 99.5 1.1E-14 3.9E-19 128.9 9.5 78 327-407 28-109 (127)
240 2jwn_A Embryonic polyadenylate 99.5 6.3E-15 2.2E-19 130.7 7.9 79 150-229 36-114 (124)
241 1iqt_A AUF1, heterogeneous nuc 99.5 2.5E-15 8.6E-20 120.5 4.8 74 152-226 1-74 (75)
242 2nlw_A Eukaryotic translation 99.5 4.7E-15 1.6E-19 127.4 6.8 80 149-230 14-100 (105)
243 1x5o_A RNA binding motif, sing 99.5 1E-14 3.4E-19 127.3 9.0 76 148-224 23-98 (114)
244 2cpi_A CCR4-NOT transcription 99.5 3.7E-15 1.3E-19 129.4 6.1 88 146-233 11-104 (111)
245 2dgw_A Probable RNA-binding pr 99.5 6.3E-15 2.2E-19 123.0 7.2 80 147-229 7-86 (91)
246 2fc8_A NCL protein; structure 99.5 2.6E-14 8.8E-19 122.0 11.2 78 326-406 13-90 (102)
247 1x4b_A Heterogeneous nuclear r 99.5 5.6E-15 1.9E-19 129.4 7.1 80 150-230 27-106 (116)
248 2kvi_A Nuclear polyadenylated 99.5 1.7E-14 5.9E-19 121.6 9.6 74 327-408 9-83 (96)
249 2hgl_A HNRPF protein, heteroge 99.5 3.1E-15 1E-19 134.2 5.2 79 147-227 41-122 (136)
250 1x4g_A Nucleolysin TIAR; struc 99.5 1.9E-14 6.4E-19 124.5 9.9 76 327-408 24-99 (109)
251 1why_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 120.2 11.2 74 327-406 16-91 (97)
252 2cpy_A RNA-binding protein 12; 99.5 2.4E-15 8.4E-20 131.2 4.2 79 148-228 13-92 (114)
253 1x4f_A Matrin 3; structural ge 99.5 3.7E-15 1.3E-19 128.3 5.2 84 147-236 22-108 (112)
254 2lmi_A GRSF-1, G-rich sequence 99.5 4.3E-15 1.5E-19 128.1 5.6 80 147-228 8-90 (107)
255 1iqt_A AUF1, heterogeneous nuc 99.5 3.6E-15 1.2E-19 119.6 4.7 75 330-405 1-75 (75)
256 2ad9_A Polypyrimidine tract-bi 99.5 1.2E-14 4.1E-19 126.5 8.4 78 146-229 27-106 (119)
257 1l3k_A Heterogeneous nuclear r 99.5 1.2E-14 4.1E-19 139.5 9.2 80 149-229 103-182 (196)
258 2dnn_A RNA-binding protein 12; 99.5 5.6E-15 1.9E-19 127.3 6.1 76 150-228 16-91 (109)
259 2db1_A Heterogeneous nuclear r 99.5 3.4E-15 1.1E-19 131.1 4.7 79 147-227 14-95 (118)
260 2dgt_A RNA-binding protein 30; 99.5 3.7E-14 1.3E-18 118.6 10.9 73 327-407 9-81 (92)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 9.2E-15 3.2E-19 132.5 7.7 78 149-226 62-139 (140)
262 2lmi_A GRSF-1, G-rich sequence 99.5 6.1E-15 2.1E-19 127.1 6.1 79 327-407 10-91 (107)
263 2a3j_A U1 small nuclear ribonu 99.5 1.7E-14 5.7E-19 127.8 9.0 83 146-231 25-111 (127)
264 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.9E-19 130.2 8.6 120 194-320 6-130 (135)
265 2hvz_A Splicing factor, argini 99.5 1.8E-14 6.1E-19 122.7 8.8 74 329-407 1-74 (101)
266 1wel_A RNA-binding protein 12; 99.5 2.5E-15 8.6E-20 133.2 3.6 80 148-228 23-102 (124)
267 2cpj_A Non-POU domain-containi 99.5 3.4E-14 1.2E-18 120.5 10.3 76 326-407 13-88 (99)
268 1wex_A Hypothetical protein (r 99.5 1.7E-14 5.8E-19 123.2 8.4 77 147-229 12-90 (104)
269 2hgn_A Heterogeneous nuclear r 99.5 5.2E-15 1.8E-19 133.1 5.2 79 148-229 44-122 (139)
270 2cq1_A PTB-like protein L; RRM 99.5 1.5E-14 5.2E-19 122.7 7.8 78 146-229 11-90 (101)
271 2dha_A FLJ20171 protein; RRM d 99.5 8.3E-15 2.9E-19 128.9 6.3 79 147-227 20-102 (123)
272 2dnq_A RNA-binding protein 4B; 99.5 3.5E-14 1.2E-18 118.2 9.8 76 147-230 5-80 (90)
273 2err_A Ataxin-2-binding protei 99.5 1.1E-14 3.8E-19 125.9 6.8 83 145-229 24-106 (109)
274 2lcw_A RNA-binding protein FUS 99.3 9.4E-16 3.2E-20 134.3 0.0 80 327-406 6-93 (116)
275 1whx_A Hypothetical protein ri 99.5 4.6E-14 1.6E-18 122.3 10.6 76 327-408 9-84 (111)
276 2dha_A FLJ20171 protein; RRM d 99.5 1E-14 3.5E-19 128.4 6.3 78 327-406 22-103 (123)
277 2la4_A Nuclear and cytoplasmic 99.5 4.9E-14 1.7E-18 120.0 10.4 77 147-229 24-100 (101)
278 2ytc_A PRE-mRNA-splicing facto 99.5 3.6E-14 1.2E-18 116.7 9.2 74 326-405 10-84 (85)
279 2j8a_A Histone-lysine N-methyl 99.5 1.4E-14 4.8E-19 125.0 6.8 77 329-405 3-93 (136)
280 1x4c_A Splicing factor, argini 99.5 2.2E-14 7.5E-19 123.8 8.2 75 148-229 13-92 (108)
281 3lqv_A PRE-mRNA branch site pr 99.5 4.4E-14 1.5E-18 123.4 10.1 78 327-407 7-84 (115)
282 2f3j_A RNA and export factor b 99.5 1.7E-14 5.8E-19 136.0 7.9 82 148-230 86-167 (177)
283 2e5j_A Methenyltetrahydrofolat 99.5 4.9E-14 1.7E-18 119.1 10.0 76 327-407 18-93 (97)
284 2f3j_A RNA and export factor b 99.5 3.5E-14 1.2E-18 133.8 9.7 82 326-408 86-167 (177)
285 1why_A Hypothetical protein ri 99.5 3.6E-14 1.2E-18 119.9 8.9 78 147-230 14-93 (97)
286 2xs2_A Deleted in azoospermia- 99.5 2.4E-14 8.2E-19 122.2 7.7 79 327-408 8-86 (102)
287 2cq2_A Hypothetical protein LO 99.5 2.6E-14 8.8E-19 123.1 7.9 78 327-410 24-108 (114)
288 2lcw_A RNA-binding protein FUS 99.3 1.4E-15 4.8E-20 133.2 0.0 83 147-229 4-94 (116)
289 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-14 4.8E-19 125.0 6.3 80 146-229 24-104 (111)
290 3pgw_S U1-70K; protein-RNA com 99.5 7.6E-15 2.6E-19 157.9 5.7 145 166-317 8-182 (437)
291 1fj7_A Nucleolin RBD1, protein 99.5 4.2E-15 1.4E-19 126.7 2.8 78 327-406 16-93 (101)
292 2dnp_A RNA-binding protein 14; 99.5 6E-14 2.1E-18 116.7 9.9 73 327-407 8-80 (90)
293 1fj7_A Nucleolin RBD1, protein 99.5 4.1E-15 1.4E-19 126.8 2.7 80 148-229 15-94 (101)
294 2hgm_A HNRPF protein, heteroge 99.5 1.9E-14 6.5E-19 126.9 7.0 79 146-227 38-118 (126)
295 1x4g_A Nucleolysin TIAR; struc 99.5 5E-14 1.7E-18 121.8 9.4 80 146-231 21-100 (109)
296 2e5g_A U6 snRNA-specific termi 99.5 5E-14 1.7E-18 118.2 9.1 73 327-405 7-79 (94)
297 2ytc_A PRE-mRNA-splicing facto 99.5 3.9E-14 1.3E-18 116.5 8.1 75 147-227 9-84 (85)
298 1wg1_A KIAA1579 protein, homol 99.5 1.6E-14 5.5E-19 119.7 5.8 84 148-238 3-86 (88)
299 2hgm_A HNRPF protein, heteroge 99.5 2.5E-14 8.6E-19 126.1 7.3 77 327-406 41-119 (126)
300 2cpx_A Hypothetical protein FL 99.5 8E-15 2.7E-19 128.1 4.0 83 148-230 23-105 (115)
301 2e5j_A Methenyltetrahydrofolat 99.5 3.9E-14 1.3E-18 119.7 8.1 78 148-230 17-94 (97)
302 2xnq_A Nuclear polyadenylated 99.5 9E-14 3.1E-18 117.4 10.3 73 326-406 20-93 (97)
303 2fc9_A NCL protein; structure 99.5 1.9E-14 6.6E-19 122.6 6.0 80 147-230 12-91 (101)
304 2fc8_A NCL protein; structure 99.5 3.1E-14 1.1E-18 121.5 6.9 82 146-230 11-92 (102)
305 1nu4_A U1A RNA binding domain; 99.5 3.3E-14 1.1E-18 120.1 7.0 78 327-407 7-88 (97)
306 2jvo_A Nucleolar protein 3; nu 99.5 5.9E-14 2E-18 121.0 8.7 73 326-406 29-101 (108)
307 1whx_A Hypothetical protein ri 99.5 9.7E-15 3.3E-19 126.7 3.7 82 149-238 9-90 (111)
308 2cqh_A IGF-II mRNA-binding pro 99.5 5.3E-14 1.8E-18 117.9 8.0 73 327-406 7-81 (93)
309 2kvi_A Nuclear polyadenylated 99.5 5.3E-14 1.8E-18 118.6 7.7 76 146-229 6-82 (96)
310 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.4E-18 115.7 10.0 77 147-229 5-81 (94)
311 2jvo_A Nucleolar protein 3; nu 99.5 6.9E-14 2.4E-18 120.6 8.5 78 145-230 26-103 (108)
312 1fjc_A Nucleolin RBD2, protein 99.5 5.2E-14 1.8E-18 118.6 7.5 75 327-406 15-89 (96)
313 2la4_A Nuclear and cytoplasmic 99.5 4.5E-14 1.5E-18 120.3 7.1 72 328-405 27-98 (101)
314 2dnl_A Cytoplasmic polyadenyla 99.5 3.8E-14 1.3E-18 123.6 6.7 74 148-224 6-82 (114)
315 3egn_A RNA-binding protein 40; 99.5 8E-15 2.7E-19 133.5 2.5 82 145-229 40-129 (143)
316 1nu4_A U1A RNA binding domain; 99.5 3E-14 1E-18 120.3 5.8 82 147-231 5-90 (97)
317 2xnq_A Nuclear polyadenylated 99.5 1.1E-13 3.6E-18 117.0 9.0 78 144-229 16-94 (97)
318 3beg_B Splicing factor, argini 99.5 6.6E-14 2.3E-18 122.2 7.4 70 148-224 14-83 (115)
319 2dnp_A RNA-binding protein 14; 99.5 7.5E-14 2.6E-18 116.2 7.4 76 147-230 6-81 (90)
320 1wg1_A KIAA1579 protein, homol 99.5 1E-13 3.4E-18 114.9 8.0 74 327-407 4-77 (88)
321 2pe8_A Splicing factor 45; RRM 99.5 2.6E-13 9E-18 116.0 10.8 80 327-406 7-92 (105)
322 2diu_A KIAA0430 protein; struc 99.5 2.1E-13 7.3E-18 111.2 9.5 79 148-236 6-90 (96)
323 2dgt_A RNA-binding protein 30; 99.5 7.3E-14 2.5E-18 116.7 7.0 77 146-230 6-82 (92)
324 2dgu_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 119.4 6.9 74 148-229 9-82 (103)
325 1x5p_A Negative elongation fac 99.5 4E-13 1.4E-17 113.4 11.4 72 327-406 14-85 (97)
326 3egn_A RNA-binding protein 40; 99.5 3.5E-14 1.2E-18 129.2 5.1 81 327-407 44-129 (143)
327 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-13 5.1E-18 140.0 10.3 77 147-228 204-281 (282)
328 1sjr_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 123.7 10.9 77 327-407 45-123 (164)
329 2xs2_A Deleted in azoospermia- 99.4 2.8E-14 9.5E-19 121.8 3.8 77 149-228 8-84 (102)
330 2e44_A Insulin-like growth fac 99.4 2.4E-13 8.1E-18 114.5 9.4 77 327-407 14-91 (96)
331 2cpd_A Apobec-1 stimulating pr 99.4 1.6E-13 5.4E-18 116.4 8.3 75 148-230 13-89 (99)
332 3zzy_A Polypyrimidine tract-bi 99.4 3.4E-13 1.2E-17 118.8 10.2 75 327-406 27-104 (130)
333 1fjc_A Nucleolin RBD2, protein 99.4 3E-14 1E-18 120.2 3.3 77 148-229 14-90 (96)
334 2e5i_A Heterogeneous nuclear r 99.4 6.4E-13 2.2E-17 116.5 11.6 75 326-406 23-100 (124)
335 2j8a_A Histone-lysine N-methyl 99.4 6.2E-14 2.1E-18 121.0 4.9 79 151-229 3-95 (136)
336 2diu_A KIAA0430 protein; struc 99.4 4.3E-13 1.5E-17 109.4 9.4 72 329-410 10-86 (96)
337 2e44_A Insulin-like growth fac 99.4 1.3E-13 4.6E-18 116.1 6.6 79 148-230 13-92 (96)
338 1wf1_A RNA-binding protein RAL 99.4 1.8E-13 6.1E-18 118.5 7.5 73 149-229 26-99 (110)
339 2voo_A Lupus LA protein; RNA-b 99.4 8.2E-13 2.8E-17 126.3 12.5 123 284-408 63-187 (193)
340 2dnl_A Cytoplasmic polyadenyla 99.4 3.4E-13 1.2E-17 117.5 8.7 74 327-403 7-83 (114)
341 2cqh_A IGF-II mRNA-binding pro 99.4 1E-13 3.5E-18 116.1 4.9 75 148-229 6-82 (93)
342 3d2w_A TAR DNA-binding protein 99.4 5.7E-13 2E-17 110.5 9.0 71 326-405 9-81 (89)
343 2hzc_A Splicing factor U2AF 65 99.4 4.5E-13 1.5E-17 110.5 8.3 70 327-403 5-85 (87)
344 1x5p_A Negative elongation fac 99.4 5.9E-13 2E-17 112.4 8.8 76 147-230 12-87 (97)
345 2pe8_A Splicing factor 45; RRM 99.4 7.4E-13 2.5E-17 113.1 9.1 81 148-228 6-92 (105)
346 2hzc_A Splicing factor U2AF 65 99.4 2.9E-13 1E-17 111.7 6.4 71 149-226 5-86 (87)
347 1sjr_A Polypyrimidine tract-bi 99.4 8.3E-13 2.9E-17 120.8 9.3 78 149-230 45-124 (164)
348 2cq2_A Hypothetical protein LO 99.4 3E-13 1E-17 116.4 5.7 65 147-217 22-88 (114)
349 2bz2_A Negative elongation fac 99.4 1.2E-12 4E-17 115.2 9.3 73 327-407 38-110 (121)
350 3zzy_A Polypyrimidine tract-bi 99.4 1E-12 3.4E-17 115.8 8.5 77 149-230 27-106 (130)
351 3d2w_A TAR DNA-binding protein 99.4 5.4E-13 1.9E-17 110.6 6.2 75 146-229 7-83 (89)
352 3v4m_A Splicing factor U2AF 65 99.4 1.8E-12 6.1E-17 110.8 9.0 80 327-406 4-95 (105)
353 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-12 4E-17 125.1 8.3 78 150-229 109-186 (193)
354 2e5i_A Heterogeneous nuclear r 99.3 2.5E-12 8.5E-17 112.8 9.3 74 152-231 27-103 (124)
355 1wf0_A TDP-43, TAR DNA-binding 99.3 2.6E-12 8.8E-17 106.3 8.5 69 327-404 4-74 (88)
356 2bz2_A Negative elongation fac 99.3 1.9E-12 6.5E-17 113.9 7.9 78 145-230 34-111 (121)
357 3u1l_A PRE-mRNA-splicing facto 99.3 1.9E-12 6.6E-17 126.5 8.6 81 326-412 132-233 (240)
358 1wf0_A TDP-43, TAR DNA-binding 99.3 4.6E-13 1.6E-17 110.8 3.4 75 148-229 3-77 (88)
359 3ue2_A Poly(U)-binding-splicin 99.3 4.5E-12 1.5E-16 110.5 9.1 80 327-406 19-107 (118)
360 3u1l_A PRE-mRNA-splicing facto 99.3 4.2E-12 1.4E-16 124.1 8.0 78 147-230 131-229 (240)
361 2dit_A HIV TAT specific factor 99.3 1.6E-11 5.4E-16 106.5 10.8 77 327-407 14-101 (112)
362 1jmt_A Splicing factor U2AF 35 99.3 1.7E-12 6E-17 110.7 4.1 72 333-405 20-103 (104)
363 2dit_A HIV TAT specific factor 99.3 1.2E-11 4.2E-16 107.2 8.6 84 146-233 11-105 (112)
364 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.8E-16 105.2 7.0 79 149-227 4-94 (105)
365 3ue2_A Poly(U)-binding-splicin 99.2 2.8E-11 9.6E-16 105.4 7.0 79 149-227 19-106 (118)
366 1jmt_A Splicing factor U2AF 35 99.2 8.7E-12 3E-16 106.4 3.3 72 155-227 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.6E-10 5.5E-15 97.4 9.7 62 338-406 27-88 (100)
368 3s6e_A RNA-binding protein 39; 99.1 1.9E-10 6.4E-15 99.4 9.0 76 327-406 6-91 (114)
369 3tht_A Alkylated DNA repair pr 99.1 2.4E-10 8.2E-15 117.7 8.4 73 327-405 17-96 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.0 6.9E-10 2.4E-14 93.5 9.6 73 150-229 10-89 (100)
371 3tht_A Alkylated DNA repair pr 99.0 4.8E-10 1.6E-14 115.5 7.6 66 147-218 15-82 (345)
372 1owx_A Lupus LA protein, SS-B, 98.9 2E-09 6.8E-14 93.1 8.6 73 326-404 16-92 (121)
373 3s6e_A RNA-binding protein 39; 98.9 2.1E-09 7.3E-14 92.8 6.9 75 149-227 6-90 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.8 9.2E-09 3.1E-13 83.1 6.9 70 329-407 8-85 (91)
375 1owx_A Lupus LA protein, SS-B, 98.8 8.1E-09 2.8E-13 89.2 6.6 72 146-223 14-89 (121)
376 3dxb_A Thioredoxin N-terminall 98.6 5.3E-08 1.8E-12 95.0 8.2 67 339-405 140-210 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.6 2.5E-08 8.5E-13 81.0 3.8 69 328-405 15-92 (95)
378 2dnr_A Synaptojanin-1; RRM dom 98.6 5.4E-08 1.8E-12 78.7 4.8 71 149-228 6-84 (91)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 1.4E-07 4.9E-12 76.5 3.3 72 147-227 12-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.3 5.3E-07 1.8E-11 87.9 7.0 80 149-228 123-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.2 3E-06 1E-10 70.0 7.8 70 328-403 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.0 1.1E-05 3.9E-10 66.6 7.4 75 145-225 16-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.8 0.00011 3.7E-09 60.4 9.4 86 149-243 7-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.1 0.0035 1.2E-07 51.5 10.2 90 229-341 7-99 (104)
385 1wey_A Calcipressin 1; structu 96.8 0.0015 5E-08 54.0 5.4 73 328-406 5-82 (104)
386 1uw4_A UPF3X; nonsense mediate 96.8 0.0045 1.5E-07 50.2 7.9 70 151-220 2-73 (91)
387 1uw4_A UPF3X; nonsense mediate 96.6 0.0082 2.8E-07 48.7 8.4 70 329-398 2-73 (91)
388 1wey_A Calcipressin 1; structu 96.6 0.0021 7E-08 53.1 4.8 73 150-228 5-82 (104)
389 1whv_A Poly(A)-specific ribonu 96.5 0.0057 2E-07 49.6 6.7 58 147-213 13-70 (100)
390 1whv_A Poly(A)-specific ribonu 96.4 0.0067 2.3E-07 49.2 6.5 55 328-391 16-70 (100)
391 3ctr_A Poly(A)-specific ribonu 96.3 0.0054 1.8E-07 49.9 5.3 55 328-391 6-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 96.1 0.019 6.4E-07 48.8 8.2 65 327-399 23-87 (119)
393 1wwh_A Nucleoporin 35, nucleop 95.6 0.038 1.3E-06 46.9 7.7 63 149-219 23-85 (119)
394 3ctr_A Poly(A)-specific ribonu 95.5 0.018 6.1E-07 46.9 5.1 54 151-213 7-60 (101)
395 2l08_A Regulator of nonsense t 95.3 0.017 5.8E-07 47.1 4.4 72 149-220 8-81 (97)
396 3pq1_A Poly(A) RNA polymerase; 94.8 0.007 2.4E-07 64.3 1.1 61 145-211 48-108 (464)
397 2l08_A Regulator of nonsense t 94.8 0.038 1.3E-06 45.0 5.2 72 327-398 8-81 (97)
398 3p3d_A Nucleoporin 53; structu 92.3 0.062 2.1E-06 46.2 2.4 76 149-226 6-95 (132)
399 3p3d_A Nucleoporin 53; structu 91.9 0.23 7.8E-06 42.7 5.5 74 329-404 8-95 (132)
400 3pq1_A Poly(A) RNA polymerase; 90.5 0.13 4.4E-06 54.7 3.2 55 328-388 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 74.4 5.9 0.0002 42.7 7.7 55 328-391 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 73.8 5 0.00017 43.3 6.9 56 150-214 440-495 (507)
403 4eyt_A Telomerase associated p 38.8 1.4E+02 0.0047 23.3 8.0 58 147-212 9-66 (129)
404 4eyt_A Telomerase associated p 35.2 1.6E+02 0.0054 23.0 7.6 56 328-391 12-67 (129)
405 2pk2_A Cyclin-T1, protein TAT; 33.2 9 0.00031 39.2 0.0 13 339-351 228-240 (358)
406 3tj1_A RNA polymerase I-specif 31.6 16 0.00053 40.3 1.5 8 166-173 385-392 (649)
407 2g0c_A ATP-dependent RNA helic 31.4 97 0.0033 23.2 5.8 58 339-405 12-74 (76)
408 3lpe_A Putative transcription 25.8 2.2E+02 0.0077 22.3 7.2 52 177-252 40-91 (92)
409 4e8u_A Putative uncharacterize 24.7 93 0.0032 27.8 5.1 52 151-205 13-75 (172)
410 3ts2_A Protein LIN-28 homolog 22.6 19 0.00065 31.6 0.1 28 343-378 2-29 (148)
411 4e8u_A Putative uncharacterize 22.5 2.4E+02 0.0082 25.2 7.3 57 329-388 13-81 (172)
412 3tj1_A RNA polymerase I-specif 21.2 29 0.00098 38.2 1.2 8 167-174 383-390 (649)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.6e-41 Score=345.99 Aligned_cols=243 Identities=19% Similarity=0.305 Sum_probs=224.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..+++|||+|||+++|+++|+++|++|| |..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3679999999999999999999999999 999988 467899999999999999999999999999999999999
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...++|||+|||..+|+++|+++|+.+|. |..+.++.+. .++.++|||||+|.+.++|.+|+..|++..+ .++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~ 165 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS--LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGKPL----GPR 165 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC--eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCCEe----CCc
Confidence 99999999999999999999999999999 9999999874 4789999999999999999999999999887 589
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCC-CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
.|.|.++.+...... ....++|||+|||..+ |+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|
T Consensus 166 ~i~v~~a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A 242 (284)
T 3smz_A 166 TLYVHWTDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEA 242 (284)
T ss_dssp ECEEEECCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHH
T ss_pred EEEEEECCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHH
Confidence 999999987544322 2356899999999995 999999999999999999999986 789999999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEeec
Q 006327 387 INAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~ 407 (650)
+..|||..|.|+.|.|.++..
T Consensus 243 ~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 243 QQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHTTCEETTEECEEEECCS
T ss_pred HHHhCCCccCCeEEEEEEecC
Confidence 999999999999999988754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-41 Score=350.54 Aligned_cols=249 Identities=20% Similarity=0.316 Sum_probs=214.2
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 4457899999999999999999999999999999999998643 58999999999999999995 89999999999998
Q ss_pred CCCCCCcceeCCcCCCccHHHHHHHHhhcC-CcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006327 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (650)
Q Consensus 226 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G-~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~ 304 (650)
++ ..++|||+|||..+|+++|+++|..+| . |..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 114 ~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 184 (292)
T 2ghp_A 114 HL-TECTLWMTNFPPSYTQRNIRDLLQDINVV--ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI---- 184 (292)
T ss_dssp EC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC--CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE----
T ss_pred EC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC--eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe----
Confidence 76 478999999999999999999999999 8 9999999874 478999999999999999999999999988
Q ss_pred CCcceeecccCCCCCCCcc--ccccceeeeecCCCCC-CCHHHHHHHhcccCCeeEEEEeecCC-CCCcccEEEEEeCCH
Q 006327 305 PERTVKVAFAEPLREPDPE--IMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTH 380 (650)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~--~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~G~afV~F~~~ 380 (650)
.++.|.|.++.+....... .....++|||+|||.. +|+++|+++|++||.|..|.|+++.. |+.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 5899999999876554332 3445689999999999 99999999999999999999999876 689999999999999
Q ss_pred HHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 381 EAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 381 ~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
++|.+|| .|||..|.|+.|.|.++..
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 9999999 9999999999999988643
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.6e-30 Score=254.86 Aligned_cols=180 Identities=26% Similarity=0.427 Sum_probs=152.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
+.+||||+|||+++|+++|+++|++||+|++|+|++++.|++++|||||+|.+.++|.+||+.|++..+.|+.|.+..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred C--------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 229 D--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 229 ~--------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
. ..+|||+|||..+|+++|+++|++||. |..|.|+.+ .+.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCC--eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3 568999999999999999999999999 999999987 455799999999999999999999999988
Q ss_pred eeCCCCcceeecccCCCCCCCccccccceeeeecCCC
Q 006327 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337 (650)
Q Consensus 301 ~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp 337 (650)
.++.|.|.++.++.............++..++|
T Consensus 169 ----~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 169 ----NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp ----TTEECEEEECCCHHHHHHHHC------------
T ss_pred ----CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 589999999987544333333333444444444
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=4.1e-29 Score=241.30 Aligned_cols=176 Identities=21% Similarity=0.444 Sum_probs=147.7
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||+++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445678999999999999999999999999999999999999999999999999999999999985 778888877655
Q ss_pred CCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006327 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (650)
Q Consensus 225 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~ 304 (650)
..+..... . .
T Consensus 87 ~~~~~~~~--------------------------------------~--~------------------------------ 96 (196)
T 1l3k_A 87 KRAVSRED--------------------------------------S--Q------------------------------ 96 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCccc--------------------------------------c--c------------------------------
Confidence 44321000 0 0
Q ss_pred CCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006327 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (650)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 384 (650)
.+......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 97 ----------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 97 ----------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp ----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ----------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 0000112379999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCCeeCCCeeEEEEeecc
Q 006327 385 ACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
+||.. ++..|.|+.|.|.++...
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHHHC-SCCEETTEECEEEECC--
T ss_pred HHHHh-CCcEECCEEEEEEecCCh
Confidence 99985 899999999988876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-28 Score=228.48 Aligned_cols=165 Identities=19% Similarity=0.377 Sum_probs=151.7
Q ss_pred CcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006327 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (650)
Q Consensus 231 ~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~ 310 (650)
++|||+|||.++|+++|+++|+++|. |..|.++.+. .++++|||||+|.+.++|.+|+..|++..+ .++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC--EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC--eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeE
Confidence 57999999999999999999999999 9999999985 578999999999999999999999999988 589999
Q ss_pred ecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006327 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (650)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (650)
|.++.+.... .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|
T Consensus 73 v~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 73 INWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEECCCCCCC---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEcCCCCCC---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 9998765442 2335689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeCCCeeEEEEee
Q 006327 391 NNKEFSDGNSKVKLRA 406 (650)
Q Consensus 391 ng~~~~g~~i~v~~~~ 406 (650)
||..|.|+.|.|.++.
T Consensus 150 ~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 150 QGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTCEETTEECEEEESC
T ss_pred CCCccCCcEEEEEecC
Confidence 9999999999998863
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.6e-28 Score=240.58 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=149.1
Q ss_pred CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 227 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
+.+.++|||+|||+++|+++|+++|++||. |..|+|+++. .+++++|||||+|.+.++|.+|++.+++..+ .+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDM-ITRRSLGYAYVNFQQPADAERALDTMNFDVI----KG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEeccc-CCCCccccccceeCCHHHHHHHHHHhhhhhc----CC
Confidence 445789999999999999999999999999 9999999984 4789999999999999999999999999887 58
Q ss_pred cceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
+.+++.++..... ......++|||+|||+.+|+++|+++|++||.|..|.|+++. +.++|||||+|.+.++|.+|
T Consensus 85 ~~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 85 KPVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp EECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHH
T ss_pred ccccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHH
Confidence 9999988765432 222345789999999999999999999999999999999985 45799999999999999999
Q ss_pred HHHhCCCeeCCCeeEEEEee
Q 006327 387 INAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (650)
|+.|||..|.|+.|.|.++.
T Consensus 160 i~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCEECCEEEEEEEcC
Confidence 99999999999999998864
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.1e-28 Score=237.33 Aligned_cols=175 Identities=20% Similarity=0.388 Sum_probs=153.9
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
.++|||+|||..+|+++|+++|+.||. |..|.|+.+. .+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~l 100 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP--IKSIDMSWDS-VTMKHKGFAFVEYEVPEAAQLALEQMNSVML----GGRNI 100 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC----C-CCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC--EEEEEEeecC-CCCccCceEEEEeCCHHHHHHHHHHccCCee----CCeeE
Confidence 468999999999999999999999999 9999999884 4788999999999999999999999999887 58999
Q ss_pred eecccCCCCCCCcc------ccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006327 310 KVAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 310 ~v~~a~~~~~~~~~------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A 383 (650)
.|.++.......+. .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 99887765432211 223458999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCCeeCCCeeEEEEeeccCCC
Q 006327 384 VACINAINNKEFSDGNSKVKLRARLSNP 411 (650)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (650)
.+||..|||..|.|+.|.|.++.....+
T Consensus 181 ~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999999987655443
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=9e-28 Score=225.74 Aligned_cols=165 Identities=23% Similarity=0.402 Sum_probs=151.6
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
..++|||+|||..+|+++|+++|+++|. |..|.++.+. .+++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~ 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP--INTCRIMRDY-KTGYSYGYAFVDFTSEMDSQRAIKVLNGITV----RNKR 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCEET-TTTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEEeC-CCCccceEEEEEECCHHHHHHHHHhcCCCEe----CCcE
Confidence 3579999999999999999999999999 9999999874 4788999999999999999999999999888 5899
Q ss_pred eeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
|.|.++.+.... ...++|+|+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+.
T Consensus 75 l~v~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 75 LKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CEEEECCCCSST-----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEecCCCccc-----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 999999876543 245799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCCeeCC--CeeEEEEe
Q 006327 389 AINNKEFSD--GNSKVKLR 405 (650)
Q Consensus 389 ~lng~~~~g--~~i~v~~~ 405 (650)
.|||..|.| +.|+|.++
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 999999988 88888763
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=4.7e-28 Score=237.61 Aligned_cols=165 Identities=18% Similarity=0.387 Sum_probs=150.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999986654
Q ss_pred C-----------------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHH
Q 006327 229 D-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (650)
Q Consensus 229 ~-----------------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A 291 (650)
. .++|||+|||..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK--IKSATLARDP-TTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcCceEEEEecCHHHHHHH
Confidence 3 479999999999999999999999998 9999999984 4789999999999999999999
Q ss_pred HHHhCCCCeeeCCCCcceeecccCCCCCC
Q 006327 292 YKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (650)
Q Consensus 292 ~~~l~~~~~~~g~~~~~l~v~~a~~~~~~ 320 (650)
+..|++..+ .++.|.|.++.+....
T Consensus 184 ~~~l~g~~~----~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 184 VSSMNLFDL----GGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHTTCBC----SSSBCEEEECSSCSST
T ss_pred HHHccCCEe----CCcEEEEEEecCCCCC
Confidence 999999988 5899999999876443
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.4e-27 Score=223.94 Aligned_cols=163 Identities=24% Similarity=0.391 Sum_probs=149.0
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
+++|||+|||..+|+++|+++|+.+|. |..|.++.+. .+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGE--IESCKLVRDK-ITGQSLGYGFVNYIDPKDAEKAINTLNGLRL----QTKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC-CCCcceeEEEEEECCHHHHHHHHHHcCCCcc----CCceE
Confidence 579999999999999999999999999 9999999984 4789999999999999999999999999888 58999
Q ss_pred eecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 006327 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (650)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ 389 (650)
.|.++.+... ....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.
T Consensus 75 ~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 75 KVSYARPSSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp EEEECCCCCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEecCCCcc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 9999886543 23457899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCeeCCCe--eEEEE
Q 006327 390 INNKEFSDGN--SKVKL 404 (650)
Q Consensus 390 lng~~~~g~~--i~v~~ 404 (650)
|||..|.|+. |.|.+
T Consensus 150 l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKF 166 (167)
T ss_dssp HTTCCCTTCSSCCEEEE
T ss_pred hcCCccCCCccceEEEe
Confidence 9999999986 55544
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7.8e-28 Score=227.70 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=144.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCC--CCcceEEEEEeCHHHHHHHHHhccCCccc---CCcCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCG 223 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg--~~~G~afV~F~~~e~A~~Al~~l~~~~l~---g~~i~ 223 (650)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999997776 44454
Q ss_pred CCCCC-------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhC
Q 006327 224 TAPSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (650)
Q Consensus 224 v~~~~-------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~ 296 (650)
+.++. ..++|||+|||..+|+++|+++|++||. |..+.++.+. ++.++|||||+|.+.++|.+|++.||
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 43332 4678999999999999999999999999 9999999984 68899999999999999999999999
Q ss_pred CCCeeeCCCCcceeecccC
Q 006327 297 KPDVVFGHPERTVKVAFAE 315 (650)
Q Consensus 297 ~~~~~~g~~~~~l~v~~a~ 315 (650)
+..+..+ .++.|.|.||+
T Consensus 158 g~~~~~g-~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEG-CSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTT-CSSCCEEEECC
T ss_pred CCcccCC-CCCCeEEEecC
Confidence 9887543 25899998874
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=7.5e-28 Score=226.29 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=147.8
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
+.++|||+|||+++|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999887654
Q ss_pred ------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeee
Q 006327 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (650)
Q Consensus 229 ------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~ 302 (650)
..++|||+|||..+|+++|+++|+++|. |..+.++.+. .+++++|+|||+|.+.++|.+|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 157 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGS--IVQKNILRDK-LTGRPRGVAFVRYNKREEAQEAISALNNVIPE- 157 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc--EEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhcCCEec-
Confidence 4678999999999999999999999998 9999999884 47889999999999999999999999999772
Q ss_pred CCCCcceeeccc
Q 006327 303 GHPERTVKVAFA 314 (650)
Q Consensus 303 g~~~~~l~v~~a 314 (650)
+ ..+.|+|.||
T Consensus 158 g-~~~~l~V~~A 168 (168)
T 1b7f_A 158 G-GSQPLSVRLA 168 (168)
T ss_dssp T-CSSCCEEEEC
T ss_pred C-CCeEEEEEeC
Confidence 1 2388888775
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.6e-27 Score=223.64 Aligned_cols=158 Identities=25% Similarity=0.448 Sum_probs=145.6
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
+++|||+|||+++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999876653
Q ss_pred ------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006327 230 ------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (650)
Q Consensus 230 ------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g 303 (650)
.++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|||||+|.+.++|.+|++.|++..+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--- 155 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQ-VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--- 155 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC--EeEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhcCCcc---
Confidence 578999999999999999999999998 9999999874 4788999999999999999999999999987
Q ss_pred CCCc--ceeeccc
Q 006327 304 HPER--TVKVAFA 314 (650)
Q Consensus 304 ~~~~--~l~v~~a 314 (650)
.++ .|+|.||
T Consensus 156 -~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 -SGATEPITVKFA 167 (167)
T ss_dssp -TTCSSCCEEEEC
T ss_pred -CCCccceEEEeC
Confidence 344 4777664
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=8.5e-28 Score=225.76 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=146.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++. ...|.|+.|.+..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999985 568899999887765
Q ss_pred C------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeee
Q 006327 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (650)
Q Consensus 229 ~------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~ 302 (650)
. .++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|||||+|.+.++|.+|++ +++..+
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-- 153 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT--IIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF-- 153 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC--CSEEECCCSS-SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc--EEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHh-CCCEEe--
Confidence 4 678999999999999999999999998 9999999884 478999999999999999999998 777666
Q ss_pred CCCCcceeecccCCC
Q 006327 303 GHPERTVKVAFAEPL 317 (650)
Q Consensus 303 g~~~~~l~v~~a~~~ 317 (650)
.++.|.|.++.|+
T Consensus 154 --~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 --KDRKIEIKRAEPR 166 (167)
T ss_dssp --SSSCEEEEECCCC
T ss_pred --CCeEEEEeecCCC
Confidence 5899999999875
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=223.23 Aligned_cols=157 Identities=25% Similarity=0.442 Sum_probs=145.0
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC--
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (650)
++|||+|||.++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999985 47899999999999999999999999999999999886553
Q ss_pred ------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeee
Q 006327 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (650)
Q Consensus 229 ------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~ 302 (650)
..++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT--EEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 3568999999999999999999999999 9999999884 4789999999999999999999999999988
Q ss_pred CCCCcceeecccC
Q 006327 303 GHPERTVKVAFAE 315 (650)
Q Consensus 303 g~~~~~l~v~~a~ 315 (650)
.++.|.|.|+.
T Consensus 155 --~g~~i~v~~a~ 165 (166)
T 3md3_A 155 --NGRPLRINWAA 165 (166)
T ss_dssp --TTEECEEEESC
T ss_pred --CCcEEEEEecC
Confidence 58999999985
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7e-27 Score=221.10 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=147.0
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccC--CCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g--~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
+.++|||+|||+++|+++|+++|++||. |..|.|+++.. ++ +++|||||+|.+.++|.+|++.|++..+..+ ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRS-QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEECS-SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cc
Confidence 4579999999999999999999999999 99999998852 44 7999999999999999999999999887533 36
Q ss_pred cceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006327 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (650)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 386 (650)
+.+.+.++.+..... ...++|||+|||..+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA----VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp SCCEEEECGGGCCSC----GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cceEEcccccccccc----CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 777777776544322 246799999999999999999999999999999999985 588999999999999999999
Q ss_pred HHHhCCCeeCC---CeeEEEEe
Q 006327 387 INAINNKEFSD---GNSKVKLR 405 (650)
Q Consensus 387 i~~lng~~~~g---~~i~v~~~ 405 (650)
++.|||..+.+ +.|.|.++
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 99999988874 88888875
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3.4e-27 Score=241.82 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=150.6
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC--
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (650)
++|||+|||+++|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999886554
Q ss_pred -------CCCcceeCCcCCCc-cHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCe
Q 006327 229 -------DNDTLFVGNICNTW-TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (650)
Q Consensus 229 -------~~~~l~v~nLp~~~-te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~ 300 (650)
..++|||+|||..+ |+++|+++|+.||. |..+.|+.+. +++++|+|||+|.+.++|.+|+..|++..+
T Consensus 176 ~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 176 QLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS--PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp GCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC--CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC--eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 35789999999995 99999999999998 9999999984 789999999999999999999999999998
Q ss_pred eeCCCCcceeecccCCCCC
Q 006327 301 VFGHPERTVKVAFAEPLRE 319 (650)
Q Consensus 301 ~~g~~~~~l~v~~a~~~~~ 319 (650)
.++.|.|.|+.+...
T Consensus 252 ----~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 ----GGSHLRVSFCAPGPP 266 (284)
T ss_dssp ----TTEECEEEECCSSSC
T ss_pred ----CCeEEEEEEecCCCc
Confidence 589999999987654
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=2.5e-27 Score=222.53 Aligned_cols=163 Identities=18% Similarity=0.379 Sum_probs=145.6
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
+.++|||+|||.++|+++|+++|++||. |..|.|+++. .+++++|||||+|.+.++|.+|+.. ...+ .++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDP-ATGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC--EEEEECCCCT-TTSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEECC-CCCCccceEEEEEccHHHHHHHHhc--cccc----CCeE
Confidence 3579999999999999999999999999 9999999884 4789999999999999999999984 3333 4788
Q ss_pred eeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
|.+.++.+.. .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 73 i~v~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 73 IDPKRAIPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CCCEECCCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cccccccchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 8888876532 23346799999999999999999999999999999999998899999999999999999999998
Q ss_pred HhCCCeeCCCeeEEEEee
Q 006327 389 AINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 389 ~lng~~~~g~~i~v~~~~ 406 (650)
+|+..|.|+.|.|.++.
T Consensus 148 -~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp -CSEECSSSSCEEEEECC
T ss_pred -CCCEEeCCeEEEEeecC
Confidence 99999999999998764
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=9.8e-26 Score=230.68 Aligned_cols=250 Identities=15% Similarity=0.223 Sum_probs=150.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHH----HHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~----~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
....+++|||+|||+++|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||+.|++..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34578999999999999999977 8999999999999975 6889999999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEe----cCHHH-HHHHHHHhC
Q 006327 222 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF----SCHVD-AMAAYKRLQ 296 (650)
Q Consensus 222 i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F----~~~e~-A~~A~~~l~ 296 (650)
|.|.++............ ...+......-..... ...................+.+.- ..... +...+..+.
T Consensus 82 l~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKG-TFVERDRKREKRKPKS--QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred EEEEEeccCcchhhhhcC-Ccccchhhhhhhhccc--cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 999877554332211110 0000000000000000 000000000000000000000000 00000 000000000
Q ss_pred CCCeeeCCCCc----c-eeeccc----CCCC--------CCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEE
Q 006327 297 KPDVVFGHPER----T-VKVAFA----EPLR--------EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359 (650)
Q Consensus 297 ~~~~~~g~~~~----~-l~v~~a----~~~~--------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~ 359 (650)
+..-....... . ....+. .+.. ..........++|||+|||..+|+++|+++|++||.|..|.
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 00000000000 0 000000 0000 00011223468899999999999999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC-CCeeEEEEee
Q 006327 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (650)
Q Consensus 360 i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (650)
|+.++ +|||||+|.+.++|.+||..|||..|. |+.|+|.|+.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98663 689999999999999999999999999 9999999874
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3.9e-26 Score=215.46 Aligned_cols=160 Identities=19% Similarity=0.340 Sum_probs=141.9
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhc----CCc-----ceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCC
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDY----GVE-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~----G~~-----~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~ 299 (650)
+.++|||+|||.++|+++|+++|+++ |.. .|..+.+.. ++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45799999999999999999999999 510 266666543 4799999999999999999 899988
Q ss_pred eeeCCCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCC
Q 006327 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (650)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~ 379 (650)
+ .++.|.|.++...... ...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+
T Consensus 75 ~----~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 75 F----QGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp E----TTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred e----cCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7 5899999987654332 236899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 380 HEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 380 ~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.++|.+|++.|||..|.|+.|.|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999875
No 21
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=7.1e-26 Score=219.73 Aligned_cols=157 Identities=14% Similarity=0.182 Sum_probs=136.0
Q ss_pred CCCcceeCCcC-CCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 229 DNDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 229 ~~~~l~v~nLp-~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
.+++|||+||+ ..+|+++|+++|.+||. |..|+|+++ ++|||||+|.+.++|.+|++.||+..+ .++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~--v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN--VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM----FGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC--EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC--eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 46799999999 89999999999999999 999999875 379999999999999999999999998 589
Q ss_pred ceeecccCCCCCCCc--------------------------------cccccceeeeecCCCCCCCHHHHHHHhcccCCe
Q 006327 308 TVKVAFAEPLREPDP--------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~--------------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 355 (650)
.|.|.++........ ....+.++|||+|||+.+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 999998863221000 001235689999999999999999999999999
Q ss_pred --eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 006327 356 --IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (650)
Q Consensus 356 --~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (650)
..|+|+.+. +.++|||||+|.+.++|.+||..|||..|.|..
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 899998774 456799999999999999999999999999984
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=3.9e-26 Score=221.53 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=135.0
Q ss_pred CCCEEEEcCCC-cCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLD-RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp-~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999764 3799999999999999999999999999998887643
Q ss_pred C-------------------------------------------CCCcceeCCcCCCccHHHHHHHHhhcCCcce--EEE
Q 006327 228 E-------------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGV--ENI 262 (650)
Q Consensus 228 ~-------------------------------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i--~~i 262 (650)
. +.++|||+|||+++|+++|+++|++||. | ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~--v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV--KRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC--CCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--cceEEE
Confidence 2 1246999999999999999999999998 7 899
Q ss_pred EEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeccc
Q 006327 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314 (650)
Q Consensus 263 ~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a 314 (650)
+++.+ .+.++|+|||+|.+.++|.+|+..||+..+.......++.|.++
T Consensus 156 ~~~~~---~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSG---KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSC---CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcC---CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99887 35667999999999999999999999998853333445555543
No 23
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.2e-26 Score=236.71 Aligned_cols=160 Identities=18% Similarity=0.369 Sum_probs=140.4
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
.++|||+|||+++|+++|+++|++|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 68999999999999999999999999 999999998855 7899999999999999999999999999999999886543
Q ss_pred -------------CCCcceeCCcCCC-ccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHH
Q 006327 229 -------------DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (650)
Q Consensus 229 -------------~~~~l~v~nLp~~-~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~ 294 (650)
..++|||+|||.. +|+++|+++|+.||. |..|.|+.+...++.++|||||+|.+.++|.+|+ .
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 3478999999999 999999999999999 9999999985334899999999999999999999 9
Q ss_pred hCCCCeeeCCCCcceeecccCCC
Q 006327 295 LQKPDVVFGHPERTVKVAFAEPL 317 (650)
Q Consensus 295 l~~~~~~~g~~~~~l~v~~a~~~ 317 (650)
|++..+ .++.|.|.|+.++
T Consensus 273 l~g~~~----~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLL----GNREISVSLADKK 291 (292)
T ss_dssp GTTEEE----TTEEEEEEECCCC
T ss_pred hcCCEE----CCcEEEEEEecCC
Confidence 999887 5899999999875
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.3e-26 Score=214.05 Aligned_cols=153 Identities=23% Similarity=0.439 Sum_probs=139.8
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~----G-------~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~ 216 (650)
++.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .|++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 77777774 45899999999999999999 899999
Q ss_pred ccCCcCCCCCCCC------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHH
Q 006327 217 ICGKRCGTAPSED------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (650)
Q Consensus 217 l~g~~i~v~~~~~------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~ 290 (650)
|.|+.|.|..+.. .++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|||||+|.+.++|.+
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCSEEEEEEEEESSTTHHHH
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--ceEEEEEecC-CCCCcceEEEEEeCCHHHHHH
Confidence 9999999877654 489999999999999999999999999 9999999884 478999999999999999999
Q ss_pred HHHHhCCCCeeeCCCCcceeeccc
Q 006327 291 AYKRLQKPDVVFGHPERTVKVAFA 314 (650)
Q Consensus 291 A~~~l~~~~~~~g~~~~~l~v~~a 314 (650)
|++.|++..+ .++.|.|.||
T Consensus 152 A~~~l~g~~~----~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQL----GDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTCEE----TTEECEEEEC
T ss_pred HHHHcCCCEE----CCeEEEEEeC
Confidence 9999999988 5899999886
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=5e-26 Score=230.02 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=150.8
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34668999999999999999999999999999999954 479999999999999999999999999999999999
Q ss_pred CCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006327 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (650)
Q Consensus 227 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~ 306 (650)
+...++|||+|||..+|+++|+++|..||. |..|.|+.+ .+++++|||||+|.+.++|.+|+..|++..++....+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGP--VEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCC--eEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 999999999999999999999999999998 999999998 3899999999999999999999999988777776678
Q ss_pred cceeecccCCCC
Q 006327 307 RTVKVAFAEPLR 318 (650)
Q Consensus 307 ~~l~v~~a~~~~ 318 (650)
++|.|.++.+..
T Consensus 169 r~i~v~~~~~~~ 180 (261)
T 3sde_A 169 RPVIVEPMEQFD 180 (261)
T ss_dssp CBCEEEECCCEE
T ss_pred ceEEEeeccccC
Confidence 999999987653
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.8e-25 Score=216.01 Aligned_cols=167 Identities=17% Similarity=0.289 Sum_probs=142.7
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhhcCC----c-----ceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCC
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKDYGV----E-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~~G~----~-----~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~ 299 (650)
..++|||+|||..+|+++|+++|+++|. . .|..+.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 4679999999999999999999999942 0 1555544 456899999999999999999 899988
Q ss_pred eeeCCCCcceeecccCCCCCCC---------------ccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecC
Q 006327 300 VVFGHPERTVKVAFAEPLREPD---------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364 (650)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 364 (650)
+ .++.|.|.++....... .......++|||+|||..+++++|+++|++||.|..|.|+++.
T Consensus 75 ~----~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 75 F----QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp E----TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred E----cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 7 58999999886542211 1112356899999999999999999999999999999999998
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 365 ~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 151 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 151 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 8999999999999999999999999999999999999987643
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=6.6e-26 Score=214.70 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=142.4
Q ss_pred CCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006327 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (650)
Q Consensus 224 v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g 303 (650)
+......++|||+|||..+|+++|+++|..+|. +..+ ++.+ ..+++++|||||+|.+.++|.+|+ .|++..+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--~~~~-~~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 78 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDL-AVVD-VRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--- 78 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH--HHTC-CCCE-EEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--cceE-EEEE-CCCCccccEEEEEECCHHHHHHHH-hcCCCEe---
Confidence 345567889999999999999999999999997 5442 2333 247889999999999999999999 5999888
Q ss_pred CCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006327 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A 383 (650)
.++.|.|.++.+..... ....++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|
T Consensus 79 -~g~~l~v~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 -FGNEIKLEKPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp -TTEEEEEECCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred -CCeEEEEecCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 48999999998754332 2356899999999999999999999999988766 46788999999999999999
Q ss_pred HHHHHHhCCCeeCCCeeEEEEee
Q 006327 384 VACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+||..|||..|.|+.|.|.++.
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHhCCCEECCeEEEEEecC
Confidence 99999999999999998888764
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.7e-25 Score=216.13 Aligned_cols=157 Identities=22% Similarity=0.412 Sum_probs=140.6
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~----G-------~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
.+++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 5666655 466899999999999999999 7999999
Q ss_pred cCCcCCCCCCC--------------------------CCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEecccccc
Q 006327 218 CGKRCGTAPSE--------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271 (650)
Q Consensus 218 ~g~~i~v~~~~--------------------------~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~ 271 (650)
.|+.|.|.++. ..++|||+|||..+|+++|+++|++||. |..|.++.+. .+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~~-~~ 152 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-AT 152 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC--EEEEEEEECT-TT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--ccEEEEeecC-CC
Confidence 99998876543 3489999999999999999999999999 9999999884 47
Q ss_pred CCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCC
Q 006327 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (650)
Q Consensus 272 g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (650)
+.++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE----TTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCC
Confidence 88999999999999999999999999988 589999999987643
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.9e-26 Score=218.35 Aligned_cols=158 Identities=18% Similarity=0.338 Sum_probs=139.7
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3457899999999999999999999999998766 334455678999999999999999999995 99999999999987
Q ss_pred CCCC--------CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCC
Q 006327 226 PSED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (650)
Q Consensus 226 ~~~~--------~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~ 297 (650)
++.. .++|||+|||..+|+++|+++|+++|. |..+ ..++.++|||||+|.+.++|.+|+..|++
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 7653 478999999999999999999999996 6555 24789999999999999999999999999
Q ss_pred CCeeeCCCCcceeecccCCC
Q 006327 298 PDVVFGHPERTVKVAFAEPL 317 (650)
Q Consensus 298 ~~~~~g~~~~~l~v~~a~~~ 317 (650)
..+ .++.|.|.|+.++
T Consensus 159 ~~~----~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEI----DGRSVSLYYTGEK 174 (175)
T ss_dssp EEE----TTEEEEEEECSSC
T ss_pred CEE----CCeEEEEEecCCC
Confidence 887 5899999999874
No 30
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.3e-24 Score=215.30 Aligned_cols=165 Identities=17% Similarity=0.290 Sum_probs=143.8
Q ss_pred CCCCCCCcceeCCcCC-CccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006327 225 APSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (650)
Q Consensus 225 ~~~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g 303 (650)
.....+++|||+|||. .+|+++|+++|+.||. |..|.|+.+. +|||||+|.+.++|.+|++.|++..+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~--i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~--- 97 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL--- 97 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTC--EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---
Confidence 3445688999999999 9999999999999999 9999999873 78999999999999999999999888
Q ss_pred CCCcceeecccCCCCCCCc------------------------------cccccceeeeecCCCCCCCHHHHHHHhcccC
Q 006327 304 HPERTVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353 (650)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~------------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 353 (650)
.++.|.|.++.+.....+ ....+.++|||+|||..+++++|+++|++||
T Consensus 98 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 98 -HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp -SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred -CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 589999998875421110 0122358899999999999999999999999
Q ss_pred -CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC-CCeeEEEEee
Q 006327 354 -DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (650)
Q Consensus 354 -~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (650)
.|..|.|+.+ .+|||||+|.+.++|.+||..|||..|. |+.|+|.++.
T Consensus 177 ~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 177 GVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999754 4789999999999999999999999999 9999998864
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.3e-24 Score=215.15 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=139.7
Q ss_pred cCCCCEEEEcCCCc-CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~-~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
...+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45789999999999 99999999999999999999998763 7899999999999999999999999999999885
Q ss_pred CCCC-----------------------------------------CCcceeCCcCCCccHHHHHHHHhhcC-CcceEEEE
Q 006327 226 PSED-----------------------------------------NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENIN 263 (650)
Q Consensus 226 ~~~~-----------------------------------------~~~l~v~nLp~~~te~~l~~~F~~~G-~~~i~~i~ 263 (650)
.+.. .++|||+|||..+|+++|+++|.+|| . |..|.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~--i~~v~ 183 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFK 183 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC--EEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC--eeEEE
Confidence 5431 46799999999999999999999999 8 99999
Q ss_pred EeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCC
Q 006327 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (650)
Q Consensus 264 i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~ 317 (650)
++.+ .+|+|||+|.+.++|.+|+..|++..+. .++.|+|.|+.+.
T Consensus 184 i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK------DRKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKST 228 (229)
T ss_dssp ECSS------STTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECSSC
T ss_pred EEEC------CCcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEecCC
Confidence 9763 3689999999999999999999998882 2799999998763
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.5e-24 Score=209.68 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=141.0
Q ss_pred CCcceeCCcCC-CccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006327 230 NDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (650)
Q Consensus 230 ~~~l~v~nLp~-~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~ 308 (650)
+++|||+|||. .+|+++|+++|+.||. |..|.++.+. +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~--i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----HGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC--CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC----SSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee----cCeE
Confidence 57999999999 9999999999999999 9999998863 68999999999999999999999888 5899
Q ss_pred eeecccCCCCCCCc------------------------------cccccceeeeecCCCCCCCHHHHHHHhcccC-CeeE
Q 006327 309 VKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIR 357 (650)
Q Consensus 309 l~v~~a~~~~~~~~------------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~ 357 (650)
|.|.++.+.....+ ....+.++|||+|||..+|+++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 99998865421110 1122368899999999999999999999999 9999
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC-CCeeEEEEee
Q 006327 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (650)
Q Consensus 358 v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (650)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|. |+.|+|.++.
T Consensus 151 v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 151 FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 999764 3789999999999999999999999999 9999999874
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=2.5e-24 Score=217.55 Aligned_cols=156 Identities=19% Similarity=0.333 Sum_probs=141.0
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~ 307 (650)
...++|||+|||..+|+++|+++|+.||. |..|.|.++ +|||||+|.+.++|.+|+..|++..+ .++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i----~g~ 86 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL----KSR 86 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE----CCc
Confidence 34578999999999999999999999999 999998653 69999999999999999999999988 589
Q ss_pred ceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006327 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (650)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai 387 (650)
.|.|.++.+ .++|||+|||..+|+++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||
T Consensus 87 ~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 87 PLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp ECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHH
T ss_pred eeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHH
Confidence 999999875 368999999999999999999999999999999999 68999999999999999999999
Q ss_pred HHhCC-CeeC---CCeeEEEEeecc
Q 006327 388 NAINN-KEFS---DGNSKVKLRARL 408 (650)
Q Consensus 388 ~~lng-~~~~---g~~i~v~~~~~~ 408 (650)
..||+ ..+. ++.|.|.+....
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEecCCCceEEEeecccc
Confidence 99954 4444 899888876544
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=1.5e-24 Score=209.79 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=137.7
Q ss_pred CCCEEEEcCCCc-CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~-~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.+++|||+|||+ ++|+++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998763 789999999999999999999999999999987543
Q ss_pred C-----------------------------------------CCCcceeCCcCCCccHHHHHHHHhhcC-CcceEEEEEe
Q 006327 228 E-----------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLV 265 (650)
Q Consensus 228 ~-----------------------------------------~~~~l~v~nLp~~~te~~l~~~F~~~G-~~~i~~i~i~ 265 (650)
. ..++|||+|||..+|+++|+++|..+| . |..|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~--v~~v~i~ 154 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFKFF 154 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC--CCEEEES
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC--ceEEEEE
Confidence 2 256799999999999999999999999 8 9999997
Q ss_pred ccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCC-CcceeecccCCC
Q 006327 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPL 317 (650)
Q Consensus 266 ~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~-~~~l~v~~a~~~ 317 (650)
.+ .+|+|||+|.+.++|.+|+..|++..+ . ++.|+|.|+.+.
T Consensus 155 ~~------~~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK------DRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVSFSKST 197 (198)
T ss_dssp ST------TSSCEEEECSSHHHHHHHHHHHTSSCC----SSCCSCCEEEECCC
T ss_pred eC------CCcEEEEEeCCHHHHHHHHHHhcCCcc----CCCCeEEEEeeccc
Confidence 64 269999999999999999999999988 4 799999998763
No 35
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=5e-20 Score=171.20 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=111.4
Q ss_pred EEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeC---CCCcceeecccC-CCCCCCccccccceeeeecCC
Q 006327 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGV 336 (650)
Q Consensus 261 ~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g---~~~~~l~v~~a~-~~~~~~~~~~~~~~~l~V~nL 336 (650)
.++|+.+ ..+++|||||+|.+.++|++|++.+++.....+ ............ .............++|||+||
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 3566665 346899999999999999999988764321100 001111111111 111112223345689999999
Q ss_pred CCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 337 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
|+.+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++...
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988543
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.2e-19 Score=155.50 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
...+|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999985 4589999999999999999999999999999999886543
Q ss_pred C--------------CCcceeCCcCCCccHHH
Q 006327 229 D--------------NDTLFVGNICNTWTKEA 246 (650)
Q Consensus 229 ~--------------~~~l~v~nLp~~~te~~ 246 (650)
. .++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 2 35799999999999864
No 37
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=4.3e-19 Score=190.98 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=77.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.||+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=3.2e-18 Score=157.51 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=108.3
Q ss_pred cCCCcceEEEEecCHHHHHHHHHHh-CCCCeeeCCCCcceeecccCCCC-----------CCCccccccceeeeecCCCC
Q 006327 271 EGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLR-----------EPDPEIMAHVKTVFLDGVPP 338 (650)
Q Consensus 271 ~g~srG~aFV~F~~~e~A~~A~~~l-~~~~~~~g~~~~~l~v~~a~~~~-----------~~~~~~~~~~~~l~V~nLp~ 338 (650)
....+|+++|+|.+.++|++|++.+ |+..+ .+ .+.+.++.... ..........++|||+|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 3466899999999999999999999 88877 46 88888776421 12223334568999999999
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 9999999999999999999999876 68999999999999999999999999999999998864
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=143.98 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=76.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998863
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=144.91 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
-..++|||+|||+++|+++|+++|++||.|..|+|++++.|++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.3e-17 Score=154.92 Aligned_cols=134 Identities=23% Similarity=0.261 Sum_probs=109.5
Q ss_pred EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc-------cCCcCC------------CCCCCCCCcceeCCcC
Q 006327 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-------CGKRCG------------TAPSEDNDTLFVGNIC 239 (650)
Q Consensus 179 ~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l-------~g~~i~------------v~~~~~~~~l~v~nLp 239 (650)
++.|+.+.. +++|||||+|.+.++|++|++.+++... .+.... .......++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777643 6899999999999999999988764211 111111 1122346899999999
Q ss_pred CCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCC
Q 006327 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (650)
Q Consensus 240 ~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (650)
..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 80 ~~~~~~~l~~~F~~~G~--v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR--VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSC--EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCC--eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCCCCC
Confidence 99999999999999999 9999999984 4899999999999999999999999999887 589999999987654
Q ss_pred CC
Q 006327 320 PD 321 (650)
Q Consensus 320 ~~ 321 (650)
..
T Consensus 153 ~~ 154 (158)
T 2kn4_A 153 PD 154 (158)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 42
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=3.5e-18 Score=168.18 Aligned_cols=81 Identities=10% Similarity=0.297 Sum_probs=76.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
..++|||+||++.+|+++|+++|++|| .|+.|.|++++.+++++|||||+|.+.++|.+||+.||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 357899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 43
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.1e-17 Score=153.09 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=78.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=141.30 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=76.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
+.++|||+|||+.+++++|+++|++||.|..|.|+++..|++++|||||+|.+.++|.+||+.|||+.|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998864
No 45
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.8e-17 Score=149.28 Aligned_cols=122 Identities=14% Similarity=0.242 Sum_probs=81.0
Q ss_pred eEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCccccccceeeeecCCCCCCCHHHHHHHhcccCCee
Q 006327 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356 (650)
Q Consensus 277 ~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 356 (650)
++|++|.+...+..|+..+++.... ++ ..+.+..+ +......++|||+|||+.+|+++|+++|++||.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 5677888888888888888876542 11 12223322 22233568999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 357 ~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
.|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++...
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999989999999999999999999999999999999999999987543
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=3e-17 Score=143.62 Aligned_cols=106 Identities=20% Similarity=0.341 Sum_probs=74.4
Q ss_pred CCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006327 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (650)
Q Consensus 230 ~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l 309 (650)
.++|||+|||+.+|+++|+++|++||. |..|+|+.+ .+.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 568999999999999999999999999 999999987 355899999999999999999999999988 58999
Q ss_pred eecccCCCCCCCcc---ccccceeeeecCCCCCCCHHH
Q 006327 310 KVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQ 344 (650)
Q Consensus 310 ~v~~a~~~~~~~~~---~~~~~~~l~V~nLp~~~t~~~ 344 (650)
.|.++.+....... .....++|||+|||+.+|++.
T Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 76 FVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEESSCCCC----------------------------
T ss_pred EEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 99999876543322 222346799999999998763
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=9.9e-17 Score=142.81 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=78.5
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 654
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=138.22 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=74.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eeCCCee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGNS 400 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~----~~~g~~i 400 (650)
..++|||+|||+.+|+++|+++|++||. |..|+|++|+.|++++|||||+|.+.++|.+||+.|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 679999999999999999999999999999999999997 4999999
Q ss_pred EEEEee
Q 006327 401 KVKLRA 406 (650)
Q Consensus 401 ~v~~~~ 406 (650)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999874
No 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=138.83 Aligned_cols=85 Identities=24% Similarity=0.452 Sum_probs=78.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||+.||+ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3568999999999999999999999999999999999999999999999999999999999999998 899999999887
Q ss_pred eccCCC
Q 006327 406 ARLSNP 411 (650)
Q Consensus 406 ~~~~~~ 411 (650)
.....+
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 544333
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=6e-17 Score=140.26 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.+.++|||+|||+++|+++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C
Q 006327 228 E 228 (650)
Q Consensus 228 ~ 228 (650)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=138.55 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=73.0
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCeeCCCeeEEEEe
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDGNSKVKLR 405 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln-g~~~~g~~i~v~~~ 405 (650)
+++|||+|||..+|+++|+++|++|| .|..|+|++++.|+.++|||||+|.+.++|.+||+.|+ +..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999888876
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.1e-16 Score=149.55 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=79.2
Q ss_pred EEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCC---------------CCCCccccccceeeeecCCCCCCCHHH
Q 006327 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---------------REPDPEIMAHVKTVFLDGVPPHWKENQ 344 (650)
Q Consensus 280 V~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~---------------~~~~~~~~~~~~~l~V~nLp~~~t~~~ 344 (650)
.+|...++|..|+..|++..... .++.+...++... ....+......++|||+|||+.+|+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~--kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHR--KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccc--cCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888888887655421 1333333322110 111222334567899999999999999
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 345 l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999987653
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=139.38 Aligned_cols=82 Identities=27% Similarity=0.448 Sum_probs=75.3
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc-CCcccCCcCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPS 227 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~-~~~l~g~~i~v~~~ 227 (650)
+++|||+|||+++|+++|+++|++|| .|++|+|++++.|+.++|||||+|.+.++|.+||+.++ +..|.|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999875 45789999999887
Q ss_pred CCCC
Q 006327 228 EDND 231 (650)
Q Consensus 228 ~~~~ 231 (650)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=133.55 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=77.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 87 ~~ 88 (99)
T 1whw_A 87 IK 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=137.08 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=75.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999999999875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 85 ~ 85 (116)
T 2fy1_A 85 K 85 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=131.97 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=76.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999998863
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=138.20 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCC--eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC----cccCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGK 220 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~--V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~----~l~g~ 220 (650)
...-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|.+||+.||+. .|.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 346789999999999999999999999995 679999999999999999999999999999999999986 48899
Q ss_pred cCCCCCCCC
Q 006327 221 RCGTAPSED 229 (650)
Q Consensus 221 ~i~v~~~~~ 229 (650)
+|.|..++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 998887764
No 58
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=8.8e-17 Score=140.71 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=94.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999865 566999999999999999999999999999999999887
Q ss_pred CCCCcceeCCcCCCccHHHHHHHHhhcCC
Q 006327 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGV 256 (650)
Q Consensus 228 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~ 256 (650)
...... .+++...++++|.++|+++|.
T Consensus 83 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 653332 778888999999999999994
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-16 Score=131.88 Aligned_cols=80 Identities=20% Similarity=0.476 Sum_probs=75.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999998 99999999999998875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 88 ~ 88 (99)
T 2dgs_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=8.8e-16 Score=134.29 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=78.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=135.46 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=77.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 62
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.4e-16 Score=128.31 Aligned_cols=79 Identities=14% Similarity=0.411 Sum_probs=75.7
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.+|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999988753
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=5.7e-17 Score=135.22 Aligned_cols=80 Identities=11% Similarity=0.331 Sum_probs=72.1
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999888765
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 64
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=134.51 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=77.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=133.81 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=78.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 66
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=3.9e-16 Score=136.59 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=77.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45899999999999999999999999999999999999899999999999999999999999999999999999998765
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=129.22 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999998874
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 68
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=133.18 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=78.5
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 754
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=134.00 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=77.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=133.11 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=77.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999876
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 93 ~~ 94 (105)
T 1x5u_A 93 SA 94 (105)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=139.73 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 72
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=3.6e-16 Score=128.74 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=75.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999999999999999899999999999999999999999999999999999999875
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.2e-16 Score=131.64 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=75.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999998 7899999999999999999999999999999999999987
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 74
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=1.7e-16 Score=135.14 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=76.4
Q ss_pred ceeeeecCCCC------CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC-Cee
Q 006327 328 VKTVFLDGVPP------HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 400 (650)
Q Consensus 328 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g-~~i 400 (650)
.++|||+|||. .+++++|+++|++||.|..|.|++++.|++++|||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeec
Q 006327 401 KVKLRAR 407 (650)
Q Consensus 401 ~v~~~~~ 407 (650)
.|.++..
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9988643
No 75
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=131.17 Aligned_cols=82 Identities=27% Similarity=0.542 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 76
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.3e-16 Score=133.08 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=72.4
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccC--CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G--~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=132.12 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||..+|+++|+++|++||.|..| .|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999899999999999999999999999999999999999999886
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 84 ~ 84 (96)
T 1x5t_A 84 F 84 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 78
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=131.78 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeeCCCeeEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVK 403 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~G~afV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~ 403 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 35689999999999999999999999999999999999 789999999999999999999999999 9999999999998
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8754
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.1e-16 Score=133.58 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCeeCCCe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN------NKEFSDGN 399 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln------g~~~~g~~ 399 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEEEEeec
Q 006327 400 SKVKLRAR 407 (650)
Q Consensus 400 i~v~~~~~ 407 (650)
|.|.++..
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 98887643
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-16 Score=131.03 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=76.5
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
...++|||+|||..+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35689999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CeeEEEEe
Q 006327 398 GNSKVKLR 405 (650)
Q Consensus 398 ~~i~v~~~ 405 (650)
+.|+|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999875
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=132.53 Aligned_cols=82 Identities=11% Similarity=0.288 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999999876 66899999999999999999999999999999998888
Q ss_pred Eeecc
Q 006327 404 LRARL 408 (650)
Q Consensus 404 ~~~~~ 408 (650)
++...
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 76443
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=1.9e-16 Score=133.79 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=80.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
++++|||+|||.++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCcce
Q 006327 229 DNDTLF 234 (650)
Q Consensus 229 ~~~~l~ 234 (650)
....+.
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 765543
No 83
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=129.95 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=76.7
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 3
No 84
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=2.9e-16 Score=144.31 Aligned_cols=117 Identities=20% Similarity=0.296 Sum_probs=104.1
Q ss_pred CCCcceEEEEEeCHHHHHHHHHhc-cCCcccCCcCCCCCC----------------------CCCCcceeCCcCCCccHH
Q 006327 189 NRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTAPS----------------------EDNDTLFVGNICNTWTKE 245 (650)
Q Consensus 189 g~~~G~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~v~~~----------------------~~~~~l~v~nLp~~~te~ 245 (650)
...+|+++|+|.+.++|++|++++ |+..|.| .+.+..+ ...++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 577899999999999999999999 8888888 6665433 235799999999999999
Q ss_pred HHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCC
Q 006327 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (650)
Q Consensus 246 ~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~ 318 (650)
+|+++|++||. |..|.|+.+ ++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+..
T Consensus 89 ~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP--LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC--EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC--EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEcCCCC
Confidence 99999999999 999999876 579999999999999999999999887 58999999998753
No 85
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=4e-16 Score=127.83 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=76.6
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
..+|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred C
Q 006327 230 N 230 (650)
Q Consensus 230 ~ 230 (650)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.1e-15 Score=130.79 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=75.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+++++|+++|++|| |..|.|+++..+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3468999999999999999999999997 999999999999999999999999999999999 89999999999999886
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=129.24 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999875
No 88
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=129.43 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=75.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45899999999999999999999999999999999997 89999999999999999999999999999999999998764
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.5e-15 Score=130.51 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC---CeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g---~~i~v~ 403 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.+ +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999997 78999999999999999999999999999998 999998
Q ss_pred Eeecc
Q 006327 404 LRARL 408 (650)
Q Consensus 404 ~~~~~ 408 (650)
++...
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 77543
No 90
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=7.1e-16 Score=130.23 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=76.4
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988754
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=133.58 Aligned_cols=85 Identities=24% Similarity=0.467 Sum_probs=79.7
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87654
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=1.9e-16 Score=155.76 Aligned_cols=80 Identities=21% Similarity=0.460 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccC--CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G--~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..++|||+|||+++|+++|+++|++|| .|+.|+|++++.|++++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999887665
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 93
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=129.50 Aligned_cols=80 Identities=28% Similarity=0.516 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999887664
No 94
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=3.4e-16 Score=128.95 Aligned_cols=80 Identities=20% Similarity=0.525 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999988665
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=132.36 Aligned_cols=85 Identities=28% Similarity=0.446 Sum_probs=79.3
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999887
Q ss_pred CCCCC
Q 006327 227 SEDND 231 (650)
Q Consensus 227 ~~~~~ 231 (650)
+....
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 76543
No 96
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-16 Score=134.38 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=79.3
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 77543
No 97
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=134.35 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=78.9
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2dnm_A 89 VARY 92 (103)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 7764
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1.2e-15 Score=131.40 Aligned_cols=81 Identities=15% Similarity=0.361 Sum_probs=76.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee---CCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~---~g~~i~v~ 403 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..+ .|+.|.|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999999998 88999998
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 92 ~a~~ 95 (106)
T 2dgp_A 92 PADS 95 (106)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7643
No 99
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=1.4e-15 Score=131.95 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=78.2
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 754
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=131.95 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=77.5
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 101
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=130.82 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999998 999999999999887
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=131.08 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=75.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 46899999999999999999999999999999999997 58999999999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 103
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=131.10 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=78.1
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc-ccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~-~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~-l~g~~i~ 223 (650)
.....++|||+|||+++|+++|+++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|++.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3457899999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred CCCCCC
Q 006327 224 TAPSED 229 (650)
Q Consensus 224 v~~~~~ 229 (650)
|..+..
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 988754
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=3.5e-16 Score=146.12 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=77.5
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 225 APSE 228 (650)
Q Consensus 225 ~~~~ 228 (650)
.++.
T Consensus 147 ~~a~ 150 (165)
T 1rk8_A 147 DWCF 150 (165)
T ss_dssp EESE
T ss_pred EEec
Confidence 7664
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=130.18 Aligned_cols=79 Identities=19% Similarity=0.443 Sum_probs=74.6
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
...++|||+|||+.+|+++|+++|++|| |..|.|+++..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999887 999999999999999999999 9999999999999987
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=1.7e-16 Score=135.07 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCc------CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC-Cc
Q 006327 149 KEHEIFIGGLDR------DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-KR 221 (650)
Q Consensus 149 ~~~tlfV~nLp~------~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g-~~ 221 (650)
.+++|||+|||+ ++++++|+++|++||.|..|+|++++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 98
Q ss_pred CCCCCCC
Q 006327 222 CGTAPSE 228 (650)
Q Consensus 222 i~v~~~~ 228 (650)
|.|..+.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 8877654
No 107
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=6.2e-16 Score=135.24 Aligned_cols=85 Identities=28% Similarity=0.537 Sum_probs=79.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44578999999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
++...
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77543
No 108
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=132.41 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=75.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+++.. +.++|||||+|.+.++|.+||. +|+..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 357999999999999999999999999999999999977 9999999999999999999998 99999999999999876
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 109
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=131.64 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=74.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcc-cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe-eCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~-~~g~~i~v~~ 404 (650)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+.. |.|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4589999999999999999999999 9999999999998 89999999999999999999999999999 9999988877
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 110
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=128.57 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=73.3
Q ss_pred cceeeeecCCCCCCCHHHHH----HHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45899999999999999999 99999999999999998765 889999999999999999999999999999999
Q ss_pred EEeecc
Q 006327 403 KLRARL 408 (650)
Q Consensus 403 ~~~~~~ 408 (650)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 887443
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-16 Score=132.73 Aligned_cols=85 Identities=25% Similarity=0.495 Sum_probs=79.3
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 77643
No 112
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=132.96 Aligned_cols=83 Identities=29% Similarity=0.571 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999998876
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 643
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=133.38 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=76.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
...++|||+|||..+|+++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3468999999999999999999999999999 69999998999999999999999999999999999999999
Q ss_pred CeeEEEEee
Q 006327 398 GNSKVKLRA 406 (650)
Q Consensus 398 ~~i~v~~~~ 406 (650)
+.|+|.++.
T Consensus 93 ~~l~V~~a~ 101 (113)
T 2cpe_A 93 SKLKVSLAR 101 (113)
T ss_dssp EECEEECSS
T ss_pred CEEEEEECC
Confidence 998888753
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=5.6e-16 Score=125.30 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.+..|||+||++.+|+++|+++|.+||+|++|+|+. ++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 478999999999999999999999999999999964 6999999999999999999999999999999988765
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=127.77 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 006327 228 E 228 (650)
Q Consensus 228 ~ 228 (650)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=131.19 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCC---CCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~---tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred CCCCCC
Q 006327 225 APSEDN 230 (650)
Q Consensus 225 ~~~~~~ 230 (650)
..+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 887653
No 117
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=130.86 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=127.65 Aligned_cols=82 Identities=13% Similarity=0.312 Sum_probs=74.7
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999998854 3899999999999999999999999999999999988
Q ss_pred eecc
Q 006327 405 RARL 408 (650)
Q Consensus 405 ~~~~ 408 (650)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 7543
No 119
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=6e-16 Score=135.36 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=78.8
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 120
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=132.51 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||+|.+|.|++++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999977 9999999999999999999999 8999999999877643
No 121
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.6e-15 Score=130.74 Aligned_cols=80 Identities=8% Similarity=0.175 Sum_probs=76.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999886
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=129.79 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeE-EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc----C
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVI-EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR----C 222 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~-~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~----i 222 (650)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 9999999999999999999999999999999999999999999 8
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|.++..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 8876654
No 123
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=131.19 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEE-EEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v-~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...++|||+|||+++|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367999999999999999999999999999999 9999989999999999999999999999999999999999999877
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 654
No 124
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.3e-16 Score=132.33 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.8
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006327 226 PSE 228 (650)
Q Consensus 226 ~~~ 228 (650)
.+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 664
No 125
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=130.93 Aligned_cols=83 Identities=28% Similarity=0.441 Sum_probs=77.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||.++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999997 89999999999999999999999999999999999987
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
.+..
T Consensus 92 ~a~~ 95 (100)
T 2do4_A 92 ISNS 95 (100)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7754
No 126
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=130.00 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=74.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCee-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe----eE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN----SK 401 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~----i~ 401 (650)
..++|||+|||..+++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|++||+.|||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999999 66
Q ss_pred EEEe
Q 006327 402 VKLR 405 (650)
Q Consensus 402 v~~~ 405 (650)
|.++
T Consensus 88 v~~a 91 (99)
T 2div_A 88 LNYA 91 (99)
T ss_dssp EEET
T ss_pred Eeec
Confidence 6654
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8e-16 Score=133.61 Aligned_cols=85 Identities=22% Similarity=0.394 Sum_probs=79.2
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc------CCcccC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK------NPVICG 219 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~------~~~l~g 219 (650)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CcCCCCCCCCC
Q 006327 220 KRCGTAPSEDN 230 (650)
Q Consensus 220 ~~i~v~~~~~~ 230 (650)
+.|.|.++...
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99998877643
No 128
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=3e-15 Score=128.13 Aligned_cols=76 Identities=25% Similarity=0.474 Sum_probs=69.4
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 45999999999999999999999999999999988
Q ss_pred eecc
Q 006327 405 RARL 408 (650)
Q Consensus 405 ~~~~ 408 (650)
+...
T Consensus 80 a~~~ 83 (103)
T 2dgu_A 80 AKPP 83 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7543
No 129
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.8e-16 Score=132.10 Aligned_cols=87 Identities=28% Similarity=0.496 Sum_probs=80.0
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEec-CCCCCCcceEEEEEeCHHHHHHHHHhc-cCCcccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d-~~tg~~~G~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~ 223 (650)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446899999999999999999999999999999999998 789999999999999999999999999 89999999999
Q ss_pred CCCCCCCCc
Q 006327 224 TAPSEDNDT 232 (650)
Q Consensus 224 v~~~~~~~~ 232 (650)
|..+.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 988765443
No 130
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.1e-15 Score=136.42 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=79.8
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
++...
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 87653
No 131
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-16 Score=130.11 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=76.4
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 006327 227 S 227 (650)
Q Consensus 227 ~ 227 (650)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 132
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.1e-16 Score=142.17 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=70.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+++|+++|+++|++|| |+.|.|++++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 77999999976 999999999999999999999 79999999999888765
No 133
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=7.7e-16 Score=132.54 Aligned_cols=85 Identities=24% Similarity=0.475 Sum_probs=78.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc---cCCcC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI---CGKRC 222 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l---~g~~i 222 (650)
.....++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344679999999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred CCCCCCCC
Q 006327 223 GTAPSEDN 230 (650)
Q Consensus 223 ~v~~~~~~ 230 (650)
.|..+...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 88777653
No 134
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=133.38 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998776
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 135
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=131.81 Aligned_cols=84 Identities=27% Similarity=0.551 Sum_probs=76.6
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC-
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (650)
++|||+|||.++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|++.|++..|.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 789999999999999999999999999999998865532
Q ss_pred ---------------CCcceeCCcC
Q 006327 230 ---------------NDTLFVGNIC 239 (650)
Q Consensus 230 ---------------~~~l~v~nLp 239 (650)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 5689999986
No 136
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=129.33 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=76.9
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~--------v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
.....++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCcCCCCCC
Q 006327 218 CGKRCGTAPS 227 (650)
Q Consensus 218 ~g~~i~v~~~ 227 (650)
.|+.|.|..+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999987654
No 137
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=125.79 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=74.7
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 47999999999999999999999999999999999987766 89999999999999999999999999999999999874
No 138
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.1e-15 Score=127.02 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=75.5
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 589999999999999999999999999999999999889999999999999999999999 8999999999999887764
No 139
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=132.22 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=75.5
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999987 99999999988876
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 103 a~ 104 (116)
T 1x4b_A 103 AV 104 (116)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=127.53 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=74.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 458999999999999999999999999999999999975 889999999999999999999999999999999998875
No 141
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=127.00 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=73.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+++++|+++|++||.|..|.|+++..+ ++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4689999999999999999999999999999999998543 68999999999999999999999999999999998875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=1.8e-15 Score=130.02 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC---CcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG---KRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g---~~i~v 224 (650)
...++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.|++..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 468999999999999999999999999999999999997 79999999999999999999999999999988 88888
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 77654
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.7e-15 Score=133.10 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=76.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999875
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=129.29 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=75.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45899999999999999999999999999999999998999999999999999999999999999999999999998864
No 145
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=9.9e-16 Score=126.76 Aligned_cols=80 Identities=23% Similarity=0.543 Sum_probs=73.6
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999997 57788999988775
Q ss_pred C
Q 006327 226 P 226 (650)
Q Consensus 226 ~ 226 (650)
.
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 146
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=2.2e-15 Score=124.60 Aligned_cols=78 Identities=14% Similarity=0.334 Sum_probs=73.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+ +++..|.|+.|.|.++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 45899999999999999999999999999999999999999999999999999999999995 6889999999888753
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-16 Score=133.00 Aligned_cols=83 Identities=19% Similarity=0.505 Sum_probs=78.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 148
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.8e-15 Score=134.96 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=76.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 125 ~ 125 (129)
T 2kxn_B 125 T 125 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=128.41 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=76.2
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++. ++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344678999999999999999999999999999999999875 8999999999999999999999999999999999987
Q ss_pred CCC
Q 006327 226 PSE 228 (650)
Q Consensus 226 ~~~ 228 (650)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 765
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.3e-15 Score=140.82 Aligned_cols=85 Identities=16% Similarity=0.346 Sum_probs=79.3
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||+++|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
.++..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 77754
No 151
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=1.9e-15 Score=125.62 Aligned_cols=78 Identities=18% Similarity=0.386 Sum_probs=74.5
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999999999999999999999999999999989999999999999999999999 899999999999998763
No 152
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=8.1e-16 Score=123.42 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=71.0
Q ss_pred eeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 330 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
+|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999999899999999999999999999998 999999999998875
No 153
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=131.27 Aligned_cols=82 Identities=28% Similarity=0.514 Sum_probs=77.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999876
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 154
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=139.58 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 743
No 155
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.5e-15 Score=122.88 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=68.8
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
+..|+|+||++.+|+++|+++|.+||+|..|.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999965 69999999999999999999999999999999998763
No 156
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=8.7e-16 Score=129.35 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=74.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3589999999999999999999999999999999999899999999999999999999999999999999999998865
No 157
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=129.08 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=71.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++|| |+.|.|++++ +++++|||||+|.+.++|++||+ +|+..|.++.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 457999999999999999999999999 4599999997 89999999999999999999995 89999999999888653
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.7e-15 Score=125.54 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4589999999999999999999999999999999984 78899999999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=130.13 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=76.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346899999999999999999999999999999999988 899999999999999999999999999999999999887
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 754
No 160
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=127.47 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=70.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC--CcccCCcCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~v 224 (650)
....++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346899999999999999999999999999999999864 79999999999999999998864 7899999999
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88764
No 161
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=137.15 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=76.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eeCCCe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGN 399 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~----~~~g~~ 399 (650)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+||..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred eEEEEeec
Q 006327 400 SKVKLRAR 407 (650)
Q Consensus 400 i~v~~~~~ 407 (650)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99988754
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=130.50 Aligned_cols=80 Identities=16% Similarity=0.385 Sum_probs=74.5
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 3468999999999999999999999999999999999999999999999999999999999998 999999998777655
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 93 ~ 93 (105)
T 2dh8_A 93 T 93 (105)
T ss_dssp C
T ss_pred c
Confidence 3
No 163
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=133.20 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.1
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344679999999999999999999999999999999999999999999999999999999999999998 8999999987
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
.+..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 7643
No 164
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.1e-15 Score=134.41 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=76.4
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999989999999999999999999999999999999999998865
Q ss_pred C
Q 006327 227 S 227 (650)
Q Consensus 227 ~ 227 (650)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 165
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=4.6e-15 Score=131.54 Aligned_cols=87 Identities=7% Similarity=0.144 Sum_probs=80.0
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 006327 405 RARLSNPM 412 (650)
Q Consensus 405 ~~~~~~~~ 412 (650)
+.......
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 87654443
No 166
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=133.14 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~--------~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
.....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345789999999999999999999999999999 699999989999999999999999999999999999999
Q ss_pred cCCcCCCCCCCCC
Q 006327 218 CGKRCGTAPSEDN 230 (650)
Q Consensus 218 ~g~~i~v~~~~~~ 230 (650)
.|+.|.|..+...
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999887653
No 167
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=8.2e-16 Score=123.39 Aligned_cols=75 Identities=31% Similarity=0.533 Sum_probs=71.0
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
+|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999887653
No 168
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=4.1e-15 Score=124.41 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|..|.|+++ +++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999874 7899999999999999999999999999999999999877
Q ss_pred CCC
Q 006327 228 EDN 230 (650)
Q Consensus 228 ~~~ 230 (650)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 169
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=129.82 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=76.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++|| |..|.|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34679999999999999999999999997 999999999999999999999999999999999 8999999999999887
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 754
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.6e-15 Score=127.56 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=68.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC-----Cee
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-----GNS 400 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g-----~~i 400 (650)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34689999999999999999999999999999999876 899999999999999999999999999 888
Q ss_pred EEEEeec
Q 006327 401 KVKLRAR 407 (650)
Q Consensus 401 ~v~~~~~ 407 (650)
+|.++..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8877643
No 171
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=127.21 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=69.2
Q ss_pred cceeeeecCCCC-CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--eeCCCeeEEE
Q 006327 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~ 403 (650)
+.++|||+|||+ .+|+++|+++|++||.|..|.|+++ +|||||+|++.++|.+||+.||+. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 468999999999 9999999999999999999999865 589999999999999999999864 5999999999
Q ss_pred Eeecc
Q 006327 404 LRARL 408 (650)
Q Consensus 404 ~~~~~ 408 (650)
++...
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88643
No 172
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=139.78 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccC--CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G--~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=129.02 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=76.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v 402 (650)
..++|||+|||+.+|+++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+||..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 9999998 788889999999999999999999999996 58999999999
Q ss_pred EEeeccCC
Q 006327 403 KLRARLSN 410 (650)
Q Consensus 403 ~~~~~~~~ 410 (650)
.++.....
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 98765443
No 174
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=127.56 Aligned_cols=77 Identities=16% Similarity=0.360 Sum_probs=71.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4589999999999999999999999999999999654 5589999999999999999999999999999998888763
No 175
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=129.91 Aligned_cols=83 Identities=29% Similarity=0.569 Sum_probs=78.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7653
No 176
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=123.05 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=68.2
Q ss_pred CCEEEEcCCCcCC------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC-cC
Q 006327 150 EHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-RC 222 (650)
Q Consensus 150 ~~tlfV~nLp~~~------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~-~i 222 (650)
+++|||+|||..+ |+++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|.+|++.||+..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46789999999999999999999999999999999 88
Q ss_pred CC
Q 006327 223 GT 224 (650)
Q Consensus 223 ~v 224 (650)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 177
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=1.9e-15 Score=130.33 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=76.0
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+.+|+++|+++|++||.|+.|.|+.+. +++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44578999999999999999999999999999999999997 89999999999999999999999999999999999876
Q ss_pred CC
Q 006327 226 PS 227 (650)
Q Consensus 226 ~~ 227 (650)
.+
T Consensus 104 ~a 105 (107)
T 3ulh_A 104 LV 105 (107)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 178
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=129.70 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCC-CCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~t-g~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...++|||+|||+++|+++|+++|++|| |..|.|+.++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4679999999999999999999999999 999999999887 999999999999999999999 8999999999999877
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=131.39 Aligned_cols=80 Identities=13% Similarity=0.253 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4679999999999999999999999999999999999999999999999999999999999 999999999999998865
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 180
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=130.04 Aligned_cols=81 Identities=23% Similarity=0.518 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999888775
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=1.4e-15 Score=131.78 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=78.2
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 225 APSE 228 (650)
Q Consensus 225 ~~~~ 228 (650)
.++.
T Consensus 101 ~~a~ 104 (110)
T 1oo0_B 101 DWCF 104 (110)
T ss_dssp EESE
T ss_pred EEcc
Confidence 7664
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-15 Score=126.80 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=72.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 4589999999999999999999999999987 888888 7899999999999999999999997 999999999988776
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 92 ~ 92 (104)
T 1wg5_A 92 S 92 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.1e-15 Score=125.06 Aligned_cols=80 Identities=18% Similarity=0.412 Sum_probs=73.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 345899999999999999999999999999999999999999999999999999999999997 578999999888876
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 184
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=122.85 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=72.7
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.+| ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999875
No 185
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=127.73 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=68.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~ 404 (650)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||+.|+ +..|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4589999999999999999999999999999999875 7999999999999999999886 4789999988887
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 186
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=2e-15 Score=134.29 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999887
Q ss_pred CCC
Q 006327 226 PSE 228 (650)
Q Consensus 226 ~~~ 228 (650)
.+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 664
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=136.77 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEE--EEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC----cccCCcC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKRC 222 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~--v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~----~l~g~~i 222 (650)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|.+|+..|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5789999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred CCCCCCCC
Q 006327 223 GTAPSEDN 230 (650)
Q Consensus 223 ~v~~~~~~ 230 (650)
.|..+...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99877654
No 188
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.5e-15 Score=132.36 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=75.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999998764
No 189
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=133.47 Aligned_cols=80 Identities=8% Similarity=0.080 Sum_probs=74.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++||.| ..|.|+++. +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 45899999999999999999999999999 899999998 899999999999999999999986 999999999999987
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 553
No 190
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=7.8e-15 Score=132.95 Aligned_cols=81 Identities=20% Similarity=0.444 Sum_probs=75.9
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred e
Q 006327 405 R 405 (650)
Q Consensus 405 ~ 405 (650)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 3
No 191
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.3e-16 Score=124.01 Aligned_cols=76 Identities=29% Similarity=0.525 Sum_probs=71.9
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998899999999999999999999999998 9999999887654
No 192
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=128.53 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecC-CCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~-~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
....++|||+|||+++|+++|+++|++|| |..|.|+.++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44679999999999999999999999999 9999999998 68999999999999999999999 899999999999998
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 77643
No 193
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=125.91 Aligned_cols=80 Identities=26% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCC-CcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~-~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..++|||+|||.++|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999877765 8999999999999999999999999999999988765
Q ss_pred C
Q 006327 228 E 228 (650)
Q Consensus 228 ~ 228 (650)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=128.83 Aligned_cols=80 Identities=18% Similarity=0.425 Sum_probs=72.8
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
....++|||+|||..+++++|+++|++|| |..|.|+++. .+++++|||||+|.+.++|.+|| .|||..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 68999999999999999999999 899999999999988
Q ss_pred Eee
Q 006327 404 LRA 406 (650)
Q Consensus 404 ~~~ 406 (650)
++.
T Consensus 94 ~a~ 96 (100)
T 2j76_E 94 VAD 96 (100)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
No 195
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-16 Score=127.20 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999876554
No 196
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=128.11 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCC------CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC-e
Q 006327 327 HVKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-N 399 (650)
Q Consensus 327 ~~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~ 399 (650)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+||..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 45799999999999 789999999999999999998 46889999999999999999999999999999998 9
Q ss_pred eEEEEeec
Q 006327 400 SKVKLRAR 407 (650)
Q Consensus 400 i~v~~~~~ 407 (650)
|.|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 98887643
No 197
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1e-15 Score=128.92 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999887654
No 198
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=122.85 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=73.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++| .|..|.|+++ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 45899999999999999999999999 9999999999 789999999999999999999999 99999999999888764
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 199
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=124.51 Aligned_cols=76 Identities=11% Similarity=0.254 Sum_probs=68.6
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--eeCCCeeEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVK 403 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~ 403 (650)
.+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||+.||+. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34689999999999999999999999999999998764 799999999999999999998765 5999999999
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8754
No 200
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=124.77 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=68.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe--eCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE--FSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~--~~g~~i~v~~ 404 (650)
++++|||+|||..+|+++|+++|++||.|..|.|++ .+|||||+|++.++|.+||+.||+.. |.|+.|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 568999999999999999999999999999999975 47999999999999999999999886 7899999988
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 94 S~ 95 (100)
T 3r27_A 94 ST 95 (100)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 201
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=127.46 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=71.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
...+|||+|||+.+|+++|+++|++| .|..|.|++++. ++++|||||+|.+.++|.+|| .||+..|.|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999975 999999999999999999999 699999999998886653
No 202
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=123.04 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=68.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCeeCCCeeEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEFSDGNSKVK 403 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l--ng~~~~g~~i~v~ 403 (650)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||+.| ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 35689999999999999999999999999999998764 899999999999999999977 4678999999999
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 87 ~a~~ 90 (101)
T 2cq1_A 87 YSNH 90 (101)
T ss_dssp ECSC
T ss_pred EcCc
Confidence 8754
No 203
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=135.88 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 204
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=5.5e-15 Score=127.82 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=73.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999876 59999999988876
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 205
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=9.5e-16 Score=127.73 Aligned_cols=81 Identities=16% Similarity=0.376 Sum_probs=73.9
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999987654
Q ss_pred CC
Q 006327 409 SN 410 (650)
Q Consensus 409 ~~ 410 (650)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 206
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=129.69 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=75.7
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++ +++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999986 599999999999999999999999999999999998876
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 207
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=126.33 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.1
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||.++|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998853 489999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2cq3_A 89 NATA 92 (103)
T ss_dssp ECCS
T ss_pred Eccc
Confidence 7764
No 208
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-15 Score=129.24 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=73.0
Q ss_pred ccCCCCEEEEcCCCc-CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC--cccCCcC
Q 006327 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP--VICGKRC 222 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~-~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~--~l~g~~i 222 (650)
...++++|||+|||+ ++|+++|+++|++||.|++|+|+++ ++||||+|.+.++|.+|++.|++. .|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 9999999999999999999999764 589999999999999999998854 5999999
Q ss_pred CCCCCCCCCcce
Q 006327 223 GTAPSEDNDTLF 234 (650)
Q Consensus 223 ~v~~~~~~~~l~ 234 (650)
.|..+.....|.
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 1x4d_A 85 RVHLSQKYKRIK 96 (102)
T ss_dssp EEEEECCCTTSS
T ss_pred EEEECCCCCCCC
Confidence 998887655543
No 209
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=129.20 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=71.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.| .|+|+.++ +++++|||||+|.+.++|++||+ +++..|.++.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999955 99999997 89999999999999999999995 799999999988765
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 89 ~~ 90 (102)
T 1wez_A 89 NS 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 210
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=128.80 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999999999899999999999999999999999999999999999988766
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 211
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=133.56 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=75.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999987777777899999999999999999999999 9999999999999987
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 212
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.1e-15 Score=128.01 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=73.1
Q ss_pred cceeeeecCCCCCCCHHHHH---HHhcccCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 327 HVKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 999999999999999987654 566999999999999999999999999999998
Q ss_pred EEEEee
Q 006327 401 KVKLRA 406 (650)
Q Consensus 401 ~v~~~~ 406 (650)
+|.++.
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 888754
No 213
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.1e-15 Score=127.31 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=73.7
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~ 230 (650)
++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.+ |.+|+..|++..|.|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999887653
No 214
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=127.76 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEE-EEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~-v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 46789999999999999999999999999987 888888 7899999999999999999999997 99999999998866
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 543
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=122.57 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=67.2
Q ss_pred eeeeecCCCCCC------CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC-eeE
Q 006327 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSK 401 (650)
Q Consensus 329 ~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~ 401 (650)
++|||+|||..+ |+++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|.+||..|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 46889999999999999999999999999999998 776
Q ss_pred E
Q 006327 402 V 402 (650)
Q Consensus 402 v 402 (650)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 216
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.3e-15 Score=124.53 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=70.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 46899999999999999999999999987 56666 678999999999999999999999999999999999988864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 90 ~ 90 (101)
T 2fc9_A 90 P 90 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 217
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5e-15 Score=126.68 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=74.8
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 344679999999999999999999999999999999998854 368999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
++..
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7764
No 218
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=3.2e-15 Score=129.29 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=73.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.+ +..|.|+.|.|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446799999999999999999999999999999999999999999999999999999999999976 4889999998876
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 219
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7e-15 Score=127.21 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|+.|.|..+ +.++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999554 66899999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 220
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.2e-14 Score=125.92 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=78.0
Q ss_pred CCcceeecccCCCCCCCccccccceeeeecCCCCC-CCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006327 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (650)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A 383 (650)
.+..+.+..+.+.....+ ....++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 466677766655433322 234579999999999 999999999999999999998 478999999999999
Q ss_pred HHHHHHhCCCeeCCCeeEEEEee
Q 006327 384 VACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
.+||..||+..|.|+.|+|.++.
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHcCCCEECCeEEEEEECC
Confidence 99999999999999999998864
No 221
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=120.53 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=68.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45899999999999999999999999999999997 6799999999999999999999999999999988764
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 79 ~ 79 (90)
T 2dnq_A 79 N 79 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 222
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=5.3e-15 Score=129.86 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=73.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+.+|+++|+++|++||. |..|.|+++.. ++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4579999999999999999999999999 89999999976 9999999999999999999999 99999999999998
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8643
No 223
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=8.1e-15 Score=128.06 Aligned_cols=66 Identities=21% Similarity=0.441 Sum_probs=62.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4589999999999999999999999999999999765 89999999999999999999999999998
No 224
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.9e-15 Score=125.84 Aligned_cols=83 Identities=25% Similarity=0.579 Sum_probs=75.6
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||.. +..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999984 668999999887
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 77643
No 225
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=3.7e-15 Score=133.62 Aligned_cols=78 Identities=8% Similarity=0.127 Sum_probs=73.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+++|+++|+++|++||. |..|.|++++. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4579999999999999999999999999 89999999977 9999999999999999999999 99999999999998
Q ss_pred Eee
Q 006327 404 LRA 406 (650)
Q Consensus 404 ~~~ 406 (650)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 226
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-15 Score=126.02 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=78.9
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||..+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999743 7999999999999999999999999999999999
Q ss_pred CCCCCCcceeCC
Q 006327 226 PSEDNDTLFVGN 237 (650)
Q Consensus 226 ~~~~~~~l~v~n 237 (650)
.+.....+.+++
T Consensus 85 ~a~~~~~~~~g~ 96 (99)
T 2cpj_A 85 FACHSASLTSGP 96 (99)
T ss_dssp ESSCCSCCCCCC
T ss_pred EcCCCCCCCCCC
Confidence 998888887764
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=5.7e-15 Score=130.97 Aligned_cols=83 Identities=17% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||..+|+++|+++|++||.|+.|.|+.+. +++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998877
Q ss_pred CCCC
Q 006327 228 EDND 231 (650)
Q Consensus 228 ~~~~ 231 (650)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6533
No 228
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5e-15 Score=129.42 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=72.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999954433333337889999999999999999999999999999999999987
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 229
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=5.4e-15 Score=124.13 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=70.2
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc--ccCCcC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRC 222 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~--l~g~~i 222 (650)
....++++|||+|||+++|+++|+++|++||.|++|+|++ .+|||||+|.+.++|.+|++.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445789999999999999999999999999999999974 47999999999999999999998775 779999
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|..+..
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 8887754
No 230
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4e-15 Score=125.53 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCcCCCHHHHH----HHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~----~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
.+.++|||+|||+++|+++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357899999999999999999 99999999999999988655 89999999999999999999999999999999
Q ss_pred CCCCCCC
Q 006327 224 TAPSEDN 230 (650)
Q Consensus 224 v~~~~~~ 230 (650)
|..+...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9877653
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=125.89 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=69.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~ 404 (650)
+.++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|++.++|.+||+.|+ +..|.|+.|.|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4689999999999999999999999999999999875 7999999999999999999987 4689999999998
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 743
No 232
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=5.4e-15 Score=127.62 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=69.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++|| .|..|.|+.. .++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 357999999999999999999999999 8999998643 47999999999999999999999999999999998876
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=125.32 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=73.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--------CCC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--------SDG 398 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~--------~g~ 398 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45799999999999999999999999999999999998 899999999999999999999999999999 567
Q ss_pred eeEEEEee
Q 006327 399 NSKVKLRA 406 (650)
Q Consensus 399 ~i~v~~~~ 406 (650)
.|.|.++.
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 78887763
No 234
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.1e-15 Score=127.58 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEE-ecCCCCCCcceEEEEEeCHHHHHHHHHhcc--CCcccCCcCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~-~d~~tg~~~G~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (650)
...++|||+|||+++|+++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred CCCCCCC
Q 006327 224 TAPSEDN 230 (650)
Q Consensus 224 v~~~~~~ 230 (650)
|.++...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 8877653
No 235
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-15 Score=131.55 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999 89999999998887654
No 236
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.3e-15 Score=126.70 Aligned_cols=80 Identities=14% Similarity=0.336 Sum_probs=73.8
Q ss_pred cccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
....++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999885 35899999999999999999999999999999999987
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 104 a~ 105 (109)
T 2err_A 104 AT 105 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 237
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=120.94 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=68.8
Q ss_pred cccccceeeeecCCCCCCCHHHHHHHhccc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 323 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
......++|||+|||+.+|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999874 6799999999999999999999999999998
Q ss_pred EEEEee
Q 006327 401 KVKLRA 406 (650)
Q Consensus 401 ~v~~~~ 406 (650)
+|.++.
T Consensus 82 ~v~~a~ 87 (99)
T 2cpd_A 82 EVTLAK 87 (99)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 888764
No 238
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.4e-15 Score=126.38 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=69.6
Q ss_pred cceeeeecCCCCC-CCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~ 403 (650)
+.++|||+|||++ +|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||+.||+ ..|.|+.|.|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4689999999998 99999999999999999999974 479999999999999999998864 56999999999
Q ss_pred EeeccCC
Q 006327 404 LRARLSN 410 (650)
Q Consensus 404 ~~~~~~~ 410 (650)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9865433
No 239
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=128.90 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.9
Q ss_pred cceeeeecCCCCCCCHHHHH----HHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+.++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|..||..|||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46799999999999999876 6999999999988854 5788999999999999999999999999999999999
Q ss_pred EEeec
Q 006327 403 KLRAR 407 (650)
Q Consensus 403 ~~~~~ 407 (650)
.++..
T Consensus 105 ~~a~~ 109 (127)
T 2a3j_A 105 TFSET 109 (127)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98754
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=6.3e-15 Score=130.66 Aligned_cols=79 Identities=22% Similarity=0.490 Sum_probs=75.2
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 7999999999999887654
No 241
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.5e-15 Score=120.48 Aligned_cols=74 Identities=30% Similarity=0.601 Sum_probs=69.7
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
+|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++. ++..|.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999984 88899999987754
No 242
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=127.35 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCcCC------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC-c
Q 006327 149 KEHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-R 221 (650)
Q Consensus 149 ~~~tlfV~nLp~~~------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~-~ 221 (650)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 47899999999999 889999999999999999998 36799999999999999999999999999999998 8
Q ss_pred CCCCCCCCC
Q 006327 222 CGTAPSEDN 230 (650)
Q Consensus 222 i~v~~~~~~ 230 (650)
|.|..+.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 998877653
No 243
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=127.31 Aligned_cols=76 Identities=13% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.||+..|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999997665443
No 244
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-15 Score=129.41 Aligned_cols=88 Identities=19% Similarity=0.338 Sum_probs=78.8
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHH---HHHhccCCeEEEEEEecCCCC---CCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTN---RNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~---~~F~~~G~V~~v~l~~d~~tg---~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
.....++|||+|||+++|+++|+ ++|++||.|..|.|+++..++ +++|||||+|.+.++|++||+.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred CcCCCCCCCCCCcc
Q 006327 220 KRCGTAPSEDNDTL 233 (650)
Q Consensus 220 ~~i~v~~~~~~~~l 233 (650)
+.|.|..+....+.
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999988766543
No 245
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=122.99 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=74.5
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++| .|..|+|+++ .+++++|||||+|.+.++|.+||+ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467999999999999999999999999 9999999999 789999999999999999999999 999999999998876
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 246
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=121.98 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=71.7
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++|+ .|.++.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999873 6888888889999999999999999999999999999999999999886
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 90 ~ 90 (102)
T 2fc8_A 90 K 90 (102)
T ss_dssp C
T ss_pred c
Confidence 4
No 247
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.6e-15 Score=129.36 Aligned_cols=80 Identities=23% Similarity=0.488 Sum_probs=75.4
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999997 99999999999887764
Q ss_pred C
Q 006327 230 N 230 (650)
Q Consensus 230 ~ 230 (650)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 248
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-14 Score=121.64 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=69.3
Q ss_pred cceeeeecCCCC-CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 468999999998 99999999999999999999993 789999999999999999999999999999999988
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 654
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=3.1e-15 Score=134.16 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=73.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCC---eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~---V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
....++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346789999999999999999999999999 89999999977 9999999999999999999999 999999999988
Q ss_pred CCCC
Q 006327 224 TAPS 227 (650)
Q Consensus 224 v~~~ 227 (650)
|..+
T Consensus 119 V~~a 122 (136)
T 2hgl_A 119 VFKS 122 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7665
No 250
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=124.50 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=70.4
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4579999999999999999999999999999999876 7899999999999999999999999999999888765
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 251
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-14 Score=120.19 Aligned_cols=74 Identities=14% Similarity=0.335 Sum_probs=68.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC--CCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~ 404 (650)
+.++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4589999999999999999999999999999999754 789999999999999999999999999 99999988
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 90 a~ 91 (97)
T 1why_A 90 AK 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-15 Score=131.20 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCe-EEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEV-IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V-~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...++|||+|||+++|+++|+++|++||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 899999997 899999999999999999999986 99999999888766
Q ss_pred CC
Q 006327 227 SE 228 (650)
Q Consensus 227 ~~ 228 (650)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-15 Score=128.28 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=74.2
Q ss_pred cCCCCEEEEcCCCcC-CCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC--CcccCCcCC
Q 006327 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCG 223 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~-~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~ 223 (650)
..++++|||+|||++ +|+++|+++|++||.|+.|+|++ ++|||||+|.+.++|.+|++.|++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446899999999998 99999999999999999999963 489999999999999999998864 569999999
Q ss_pred CCCCCCCCcceeC
Q 006327 224 TAPSEDNDTLFVG 236 (650)
Q Consensus 224 v~~~~~~~~l~v~ 236 (650)
|..+.....+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9988877666554
No 254
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=128.08 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCC---eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~---V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999977 9999999999999999999999 999999999998
Q ss_pred CCCCC
Q 006327 224 TAPSE 228 (650)
Q Consensus 224 v~~~~ 228 (650)
|..+.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 87653
No 255
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=3.6e-15 Score=119.56 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=70.9
Q ss_pred eeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 330 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
+|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999998 5899999999888753
No 256
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=126.48 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=70.5
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc--CCcccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (650)
...++++|||+|||+++|+++|+++|++||.|+.|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4457899999999999999999999999999999999865 7999999999999999999887 4689999999
Q ss_pred CCCCCC
Q 006327 224 TAPSED 229 (650)
Q Consensus 224 v~~~~~ 229 (650)
|..+..
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 887754
No 257
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.53 E-value=1.2e-14 Score=139.48 Aligned_cols=80 Identities=21% Similarity=0.562 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+++|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 348999999999999999999999999999999999988999999999999999999999986 7899999999887765
Q ss_pred C
Q 006327 229 D 229 (650)
Q Consensus 229 ~ 229 (650)
.
T Consensus 182 ~ 182 (196)
T 1l3k_A 182 S 182 (196)
T ss_dssp -
T ss_pred C
Confidence 4
No 258
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.6e-15 Score=127.26 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=70.0
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..+|||+|||+++|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .|++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 899999999965 999999999999999999999 589999999988876653
No 259
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=3.4e-15 Score=131.11 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=72.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCC---eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~---V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
....++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999976 9999999999999999999999 999999999887
Q ss_pred CCCC
Q 006327 224 TAPS 227 (650)
Q Consensus 224 v~~~ 227 (650)
|..+
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7554
No 260
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=118.59 Aligned_cols=73 Identities=25% Similarity=0.525 Sum_probs=67.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 468999999999999999999999999999999973 499999999999999999999999999999888774
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 81 ~ 81 (92)
T 2dgt_A 81 S 81 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=9.2e-15 Score=132.47 Aligned_cols=78 Identities=21% Similarity=0.534 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
..++|||+|||..+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999988764
No 262
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=6.1e-15 Score=127.11 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=73.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+.+|+++|+++|++||. |..|.|+++.. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4689999999999999999999999998 89999999977 9999999999999999999999 99999999999888
Q ss_pred Eeec
Q 006327 404 LRAR 407 (650)
Q Consensus 404 ~~~~ 407 (650)
++..
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 7643
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=127.82 Aligned_cols=83 Identities=16% Similarity=0.322 Sum_probs=74.1
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHH----HHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~----~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
...+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34568899999999999999876 6999999999998853 5889999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 006327 222 CGTAPSEDND 231 (650)
Q Consensus 222 i~v~~~~~~~ 231 (650)
|.|.++....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9998876543
No 264
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=1.4e-14 Score=130.24 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred eEEEEEeCHHHHHHHHHhccCCcccCCcCCC-----CCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccc
Q 006327 194 YAFVKFANKEHAKRALTEMKNPVICGKRCGT-----APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268 (650)
Q Consensus 194 ~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v-----~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~ 268 (650)
++|++|.+...+..|++.+++....|+.... ......++|||+|||..+|+++|+++|++||. |..|.|+.+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~ 83 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR--VGDVYIPRDR 83 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC--CSEEECCCCS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecC
Confidence 6788889999999999988776555443211 12233679999999999999999999999998 9999999874
Q ss_pred cccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCC
Q 006327 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (650)
Q Consensus 269 ~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~ 320 (650)
.+++++|||||+|.+.++|.+|+..|++..+ .++.|+|.++.+....
T Consensus 84 -~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i----~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 84 -YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRPP 130 (135)
T ss_dssp -SSSSCCSCCEEECSCHHHHHHHHTTTTTCCS----SSSCCEEEECCCCCCC
T ss_pred -CCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCCC
Confidence 4789999999999999999999999999988 5899999999876544
No 265
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=122.74 Aligned_cols=74 Identities=16% Similarity=0.362 Sum_probs=69.6
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeec
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (650)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+||..||+..|.|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999877 689999999999999999999999999999999988644
No 266
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-15 Score=133.24 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+ |++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999987777777899999999999999999999999 9999999999887665
Q ss_pred C
Q 006327 228 E 228 (650)
Q Consensus 228 ~ 228 (650)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 267
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.4e-14 Score=120.52 Aligned_cols=76 Identities=20% Similarity=0.458 Sum_probs=70.2
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34589999999999999999999999999999999754 799999999999999999999999999999999886
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 268
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=123.18 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCC--cccCCcCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP--VICGKRCGT 224 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~--~l~g~~i~v 224 (650)
..++++|||+|||+++|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+|++.|++. .|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999998753 799999999999999999988654 589999998
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 87754
No 269
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.52 E-value=5.2e-15 Score=133.10 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|++|| .+++..|.++.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999 67999999975 999999999999999999999 68999999999988766
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 270
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=122.69 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc--CCcccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (650)
...++++|||+|||+++|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457899999999999999999999999999999998754 8999999999999999999874 5679999999
Q ss_pred CCCCCC
Q 006327 224 TAPSED 229 (650)
Q Consensus 224 v~~~~~ 229 (650)
|..+..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 877754
No 271
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=128.91 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=71.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCe----EEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEV----IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V----~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
.....+|||+|||+++|+++|+++|++||.| ..|+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467999999999999999999999999975 68999998 5899999999999999999999986 8889999988
Q ss_pred CCCCC
Q 006327 223 GTAPS 227 (650)
Q Consensus 223 ~v~~~ 227 (650)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 76543
No 272
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=118.21 Aligned_cols=76 Identities=29% Similarity=0.553 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||.++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467999999999999999999999999999999996 67999999999999999999999999999999988
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 273
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=125.93 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=75.6
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||.++|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999884 458999999999999999999999999999999998
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87754
No 274
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.4e-16 Score=134.32 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
..++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4589999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred eeEEEEee
Q 006327 399 NSKVKLRA 406 (650)
Q Consensus 399 ~i~v~~~~ 406 (650)
.|.|.++.
T Consensus 86 ~l~V~~a~ 93 (116)
T 2lcw_A 86 PIKVSFAT 93 (116)
Confidence 98888764
No 275
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=122.34 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=70.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999999874 57899999999999999999999999999999999986
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 276
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=128.37 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=70.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
...+|||+|||+++|+++|+++|++||.| ..|.|+++ .+++++|||||+|.+.++|.+||+. |+..|.++.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 34799999999999999999999999975 68999998 5899999999999999999999985 999999999888
Q ss_pred EEee
Q 006327 403 KLRA 406 (650)
Q Consensus 403 ~~~~ 406 (650)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7654
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.9e-14 Score=120.00 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=71.3
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||.++|+++|+++|++||.|..|+|+ +++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999997 4589999999999999999999999999999999988
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 278
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=116.66 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=68.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeeCCCeeEEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKL 404 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~~ 404 (650)
...++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| |+..|.|+.|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34689999999999999999999999999999999864 799999999999999999999 99999999999887
Q ss_pred e
Q 006327 405 R 405 (650)
Q Consensus 405 ~ 405 (650)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 279
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-14 Score=125.02 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=70.7
Q ss_pred eeeeecCC----CCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 006327 329 KTVFLDGV----PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST----HEA----AVACIN--AINNKE 394 (650)
Q Consensus 329 ~~l~V~nL----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~----~~~----A~~Ai~--~lng~~ 394 (650)
+.|+|+|| |+.+++.+|+++|++||.|..|.++.|+.||.++|||||+|.+ ++. |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCCeeEEEEe
Q 006327 395 FSDGNSKVKLR 405 (650)
Q Consensus 395 ~~g~~i~v~~~ 405 (650)
|.|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999875
No 280
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=123.83 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC-----CcC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-----KRC 222 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g-----~~i 222 (650)
...++|||+|||+++|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 46789999999999999999999999999999999865 899999999999999999999999999 888
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|..+..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8876654
No 281
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=4.4e-14 Score=123.39 Aligned_cols=78 Identities=10% Similarity=0.214 Sum_probs=72.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4579999999999999999999999999999999876 4569999999999999999999999999999999999875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 282
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=1.7e-14 Score=135.95 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467999999999999999999999999999999999997 8999999999999999999999999999999999998877
Q ss_pred CCC
Q 006327 228 EDN 230 (650)
Q Consensus 228 ~~~ 230 (650)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 543
No 283
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=119.06 Aligned_cols=76 Identities=13% Similarity=0.328 Sum_probs=69.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457999999999999999999999999997 777654 578999999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 284
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=3.5e-14 Score=133.77 Aligned_cols=82 Identities=7% Similarity=0.162 Sum_probs=77.6
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999997
Q ss_pred ecc
Q 006327 406 ARL 408 (650)
Q Consensus 406 ~~~ 408 (650)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 285
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=119.87 Aligned_cols=78 Identities=15% Similarity=0.393 Sum_probs=71.0
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc--CCcCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC--GKRCGT 224 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~--g~~i~v 224 (650)
....++|||+|||.++|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|.+|++.|++..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346799999999999999999999999999999999643 789999999999999999999999999 999998
Q ss_pred CCCCCC
Q 006327 225 APSEDN 230 (650)
Q Consensus 225 ~~~~~~ 230 (650)
..+...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 877653
No 286
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=2.4e-14 Score=122.20 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=74.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||. |+..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999998 9999999999988876
Q ss_pred cc
Q 006327 407 RL 408 (650)
Q Consensus 407 ~~ 408 (650)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 287
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=123.06 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=67.7
Q ss_pred cceeeee--cCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee-----CCCe
Q 006327 327 HVKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-----SDGN 399 (650)
Q Consensus 327 ~~~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~-----~g~~ 399 (650)
++++||| +||++.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||+.| .++.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999 66999999999999999999999998864 379999999999999999999999998 5777
Q ss_pred eEEEEeeccCC
Q 006327 400 SKVKLRARLSN 410 (650)
Q Consensus 400 i~v~~~~~~~~ 410 (650)
|.|.++.....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 77777654433
No 288
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-15 Score=133.20 Aligned_cols=83 Identities=25% Similarity=0.349 Sum_probs=77.8
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~--------v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
..+.++|||+|||+++|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CCcCCCCCCCC
Q 006327 219 GKRCGTAPSED 229 (650)
Q Consensus 219 g~~i~v~~~~~ 229 (650)
|+.|.|..+..
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999888764
No 289
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=1.4e-14 Score=125.00 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=71.5
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccC-CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G-~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
.....++|||+|||+++|+++|+++|++|| .|..|.|+. ..++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344678999999999999999999999999 899998853 358999999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 77653
No 290
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=7.6e-15 Score=157.89 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=103.8
Q ss_pred HHHHHHhccCCeEEEEEEe----cC-CCCCCcceE--EEEEeCHHHHHHHHHhccCCcc---------------------
Q 006327 166 DVRKVFERIGEVIEVRLHK----NF-STNRNKGYA--FVKFANKEHAKRALTEMKNPVI--------------------- 217 (650)
Q Consensus 166 dL~~~F~~~G~V~~v~l~~----d~-~tg~~~G~a--fV~F~~~e~A~~Al~~l~~~~l--------------------- 217 (650)
+|.++|.++++|..|..+. ++ .+....|++ |+.|.....+..++..++...+
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4889999999998874332 11 122223333 7777765444332221111100
Q ss_pred --cCCcCCCCCCCCCCcceeCCcCCCccHHHHHHHHhhcCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHh
Q 006327 218 --CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (650)
Q Consensus 218 --~g~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l 295 (650)
.............++|||+|||..+|+++|+++|.+||. |+.|.|+.+. .+++++|||||+|.+.++|.+||..|
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYSK-RSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--eeEEEeeccC-CCCCccceEEEeeccHHHHHHHHHHc
Confidence 000001112234579999999999999999999999999 9999999884 48899999999999999999999999
Q ss_pred CCCCeeeCCCCcceeecccCCC
Q 006327 296 QKPDVVFGHPERTVKVAFAEPL 317 (650)
Q Consensus 296 ~~~~~~~g~~~~~l~v~~a~~~ 317 (650)
|+..| .++.|.|.|+.+.
T Consensus 165 ng~~i----~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 165 DGKKI----DGRRVLVDVERGR 182 (437)
T ss_pred CCCEE----CCEEEEEEEeCCC
Confidence 99988 5899999998864
No 291
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-15 Score=126.70 Aligned_cols=78 Identities=12% Similarity=0.242 Sum_probs=71.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999988 677777788999999999999999999998 99999999999988763
No 292
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6e-14 Score=116.72 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=67.8
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 458999999999999999999999999999999973 499999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 293
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-15 Score=126.77 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+||+ |++..|.|+.|.|..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999888 666777789999999999999999999998 9999999999998877
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 294
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=1.9e-14 Score=126.91 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=71.0
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeE--EEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~--~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
.....++|||+|||+++|+++|+++|++| .|+ .|+|+.++. |+++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 676 999999976 99999999999999999999985 67899999998
Q ss_pred CCCC
Q 006327 224 TAPS 227 (650)
Q Consensus 224 v~~~ 227 (650)
|..+
T Consensus 115 V~~a 118 (126)
T 2hgm_A 115 VFKS 118 (126)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 7654
No 295
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=121.81 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=73.4
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446899999999999999999999999999999999865 7999999999999999999999999999999998
Q ss_pred CCCCCC
Q 006327 226 PSEDND 231 (650)
Q Consensus 226 ~~~~~~ 231 (650)
++....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 887644
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=118.25 Aligned_cols=73 Identities=15% Similarity=0.351 Sum_probs=65.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++||.|..| +.+..+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 34799999999999999999999999999987 55555554 99999999999999999 9999999999888754
No 297
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=116.46 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=69.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc-cCCcccCCcCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~v~ 225 (650)
....++|||+|||.++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.| ++..+.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 446789999999999999999999999999999999863 799999999999999999998 9999999999887
Q ss_pred CC
Q 006327 226 PS 227 (650)
Q Consensus 226 ~~ 227 (650)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 298
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=1.6e-14 Score=119.71 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.|++..+.|+.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999984 67899999999999999999999999999999999999
Q ss_pred CCCCcceeCCc
Q 006327 228 EDNDTLFVGNI 238 (650)
Q Consensus 228 ~~~~~l~v~nL 238 (650)
.....|++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88887777764
No 299
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=2.5e-14 Score=126.13 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCee--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
..++|||+|||+.+|+++|+++|++| .|+ .|.|++++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 45789999999999999999999999 676 899999977 9999999999999999999998 578999999988876
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 300
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8e-15 Score=128.14 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36799999999999999999999999999844333333337899999999999999999999999999999999998877
Q ss_pred CCC
Q 006327 228 EDN 230 (650)
Q Consensus 228 ~~~ 230 (650)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 301
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-14 Score=119.69 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 666643 78999999999999999999999999999999998877
Q ss_pred CCC
Q 006327 228 EDN 230 (650)
Q Consensus 228 ~~~ 230 (650)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 302
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9e-14 Score=117.39 Aligned_cols=73 Identities=14% Similarity=0.321 Sum_probs=68.1
Q ss_pred ccceeeeecCCCC-CCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEE
Q 006327 326 AHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (650)
Q Consensus 326 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (650)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3568999999998 99999999999999999999983 78999999999999999999999999999999988
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 92 a~ 93 (97)
T 2xnq_A 92 SS 93 (97)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 303
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=122.56 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=71.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468999999999999999999999999977 55565 6789999999999999999999999999999999999877
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7543
No 304
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=121.51 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=74.2
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++| ..|.++.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999999999999999987 368888888899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 77653
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=3.3e-14 Score=120.10 Aligned_cols=78 Identities=14% Similarity=0.390 Sum_probs=71.9
Q ss_pred cceeeeecCCCCCCCHHHHH----HHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
+.++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45899999999999999999 9999999999999874 4678999999999999999999999999999999999
Q ss_pred EEeec
Q 006327 403 KLRAR 407 (650)
Q Consensus 403 ~~~~~ 407 (650)
.++..
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 88654
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=5.9e-14 Score=120.99 Aligned_cols=73 Identities=16% Similarity=0.396 Sum_probs=68.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
...++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456899999999999999999999999999999997 789999999999999999999999999999888876
Q ss_pred e
Q 006327 406 A 406 (650)
Q Consensus 406 ~ 406 (650)
.
T Consensus 101 ~ 101 (108)
T 2jvo_A 101 K 101 (108)
T ss_dssp S
T ss_pred c
Confidence 4
No 307
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9.7e-15 Score=126.66 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999863 57899999999999999999999999999999988765
Q ss_pred CCCcceeCCc
Q 006327 229 DNDTLFVGNI 238 (650)
Q Consensus 229 ~~~~l~v~nL 238 (650)
. .++..+.
T Consensus 83 ~--~~~~~~~ 90 (111)
T 1whx_A 83 I--GVFGAAP 90 (111)
T ss_dssp T--TTTCCCC
T ss_pred C--CccCCCC
Confidence 4 3444443
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.3e-14 Score=117.86 Aligned_cols=73 Identities=15% Similarity=0.338 Sum_probs=65.7
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CeeCCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN-KEFSDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng-~~~~g~~i~v~~ 404 (650)
..++|||+|||..+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||+.||| ..|.|+.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4589999999999999999999999999 5555552 489999999999999999999999 999999999988
Q ss_pred ee
Q 006327 405 RA 406 (650)
Q Consensus 405 ~~ 406 (650)
+.
T Consensus 80 a~ 81 (93)
T 2cqh_A 80 SV 81 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 309
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.3e-14 Score=118.62 Aligned_cols=76 Identities=21% Similarity=0.478 Sum_probs=68.1
Q ss_pred ccCCCCEEEEcCCCc-CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~-~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...+.++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345789999999998 99999999999999999999984 789999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 225 APSED 229 (650)
Q Consensus 225 ~~~~~ 229 (650)
..+..
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 76643
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=115.74 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+||+ |++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3467899999999999999999999999999987 55555665 99999999999999999 999999999999987
Q ss_pred CCC
Q 006327 227 SED 229 (650)
Q Consensus 227 ~~~ 229 (650)
+..
T Consensus 79 a~~ 81 (94)
T 2e5g_A 79 REQ 81 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 311
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=6.9e-14 Score=120.58 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=71.0
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|||.++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345578999999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred CCCCCC
Q 006327 225 APSEDN 230 (650)
Q Consensus 225 ~~~~~~ 230 (650)
..+...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 887653
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=5.2e-14 Score=118.65 Aligned_cols=75 Identities=11% Similarity=0.228 Sum_probs=68.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46899999999999999999999999988766 3568899999999999999999999999999999998888763
No 313
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.5e-14 Score=120.28 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=67.4
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.++|||+|||..+++++|+++|++||.|..|.|+ +++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 5799999999999999999999999999999997 35899999999999999999999999999999888765
No 314
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.8e-14 Score=123.57 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCC---CCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~t---g~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4679999999999999999999999999999 888888777 7999999999999999999999883 255554443
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=8e-15 Score=133.49 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=72.4
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEE--------EEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV--------RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v--------~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~ 216 (650)
......++|||+|||+++|+++|+++|++||.|..| ++. .+++++|||||+|.+.++|.+||..||+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 345578999999999999999999999999998764 332 468999999999999999999999999999
Q ss_pred ccCCcCCCCCCCC
Q 006327 217 ICGKRCGTAPSED 229 (650)
Q Consensus 217 l~g~~i~v~~~~~ 229 (650)
|.|+.|.|..+..
T Consensus 117 ~~g~~l~V~~a~~ 129 (143)
T 3egn_A 117 LFGKPMVVQFARS 129 (143)
T ss_dssp ETTEECEEEECCC
T ss_pred eCCcEEEEEECCC
Confidence 9999999887754
No 316
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=3e-14 Score=120.34 Aligned_cols=82 Identities=21% Similarity=0.459 Sum_probs=74.2
Q ss_pred cCCCCEEEEcCCCcCCCHHHHH----HHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~----~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
...+++|||+|||.++|+++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3478999999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 006327 223 GTAPSEDND 231 (650)
Q Consensus 223 ~v~~~~~~~ 231 (650)
.|..+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 988876543
No 317
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.1e-13 Score=116.97 Aligned_cols=78 Identities=21% Similarity=0.466 Sum_probs=69.8
Q ss_pred hhccCCCCEEEEcCCCc-CCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 144 DRKIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 144 ~~~~~~~~tlfV~nLp~-~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
.......++|||+|||. ++|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|..+..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9887654
No 318
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=6.6e-14 Score=122.21 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
...++|||+|||+++|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 35789999999999999999999999999999999754 89999999999999999999999999998654
No 319
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.5e-14 Score=116.15 Aligned_cols=76 Identities=32% Similarity=0.546 Sum_probs=69.7
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999963 3999999999999999999999999999999887
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 320
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=1e-13 Score=114.86 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=68.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35799999999999999999999999 99999884 579999999999999999999999999999999998864
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 321
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=2.6e-13 Score=115.97 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=71.2
Q ss_pred cceeeeecCCCC-----CCCHHHHHHHhcccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 327 HVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 327 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
++++|+|.||.. +.++++|+++|++||.|..|.|++++.+ ++++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467999999963 2368999999999999999999998654 6889999999999999999999999999999999
Q ss_pred EEEEee
Q 006327 401 KVKLRA 406 (650)
Q Consensus 401 ~v~~~~ 406 (650)
.|.+..
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998864
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=111.21 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=69.7
Q ss_pred CCCCE-EEEcCCCcCCCHHH----HHHHHhcc-CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 148 KKEHE-IFIGGLDRDATQED----VRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 148 ~~~~t-lfV~nLp~~~teed----L~~~F~~~-G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
.++.| |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 55899999 599988 33 99999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeC
Q 006327 222 CGTAPSEDNDTLFVG 236 (650)
Q Consensus 222 i~v~~~~~~~~l~v~ 236 (650)
|+|..+...+.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999887776654
No 323
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.3e-14 Score=116.74 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=70.1
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
.....++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345789999999999999999999999999999999963 399999999999999999999999999999988
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77654
No 324
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=7.4e-14 Score=119.37 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||+.|++..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 459999999999999999999999999999988777
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 325
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4e-13 Score=113.41 Aligned_cols=72 Identities=15% Similarity=0.371 Sum_probs=66.1
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4589999996 89999999999999999999984 468999999999999999999999999999998888764
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=3.5e-14 Score=129.16 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=70.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV--L---ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i---~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (650)
+.++|||+|||+.+|+++|+++|++||.|..|. + +....++.++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 458999999999999999999999999987751 1 11124688999999999999999999999999999999999
Q ss_pred EEEeec
Q 006327 402 VKLRAR 407 (650)
Q Consensus 402 v~~~~~ 407 (650)
|.++..
T Consensus 124 V~~a~~ 129 (143)
T 3egn_A 124 VQFARS 129 (143)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998754
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=1.5e-13 Score=139.98 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=70.1
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc-CCcCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTA 225 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~-g~~i~v~ 225 (650)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++ +|||||+|.+.++|.+|+..||+..|. |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3467899999999999999999999999999999998653 589999999999999999999999999 9999887
Q ss_pred CCC
Q 006327 226 PSE 228 (650)
Q Consensus 226 ~~~ 228 (650)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 654
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=3e-13 Score=123.71 Aligned_cols=77 Identities=6% Similarity=0.174 Sum_probs=69.2
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC--CeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~~ 404 (650)
...+|||+||++.+|+++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4578999999999999999999999999999999754 257899999999999999999999999966 8888888
Q ss_pred eec
Q 006327 405 RAR 407 (650)
Q Consensus 405 ~~~ 407 (650)
+..
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 653
No 329
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.45 E-value=2.8e-14 Score=121.78 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (650)
..++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+. ++..|.|+.|.|..+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999997 99999999999999999999998 7888888888765543
No 330
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=114.54 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=69.5
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
..++|||+|||+.+|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999 488776543 3999999999999999999999999999999887
Q ss_pred ec
Q 006327 406 AR 407 (650)
Q Consensus 406 ~~ 407 (650)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=116.37 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERI--GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~--G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (650)
...++|||+|||+++|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367999999999999999999999999 999999874 5799999999999999999999999999999998
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 87654
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=3.4e-13 Score=118.78 Aligned_cols=75 Identities=7% Similarity=0.236 Sum_probs=66.6
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeeCC--CeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSD--GNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~-afV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~ 403 (650)
+...|||+||++.+|+++|+++|++||.|..|.|+.. .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3468899999999999999999999999999998764 3688 9999999999999999999999998 666666
Q ss_pred Eee
Q 006327 404 LRA 406 (650)
Q Consensus 404 ~~~ 406 (650)
++.
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 653
No 333
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=3e-14 Score=120.16 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||+.+|+++|+++|++||.|..| ..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 357899999999999999999999999988766 356889999999999999999999999999999999988776
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 334
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=6.4e-13 Score=116.55 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=65.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeeCC--CeeEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSD--GNSKV 402 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~-afV~F~~~~~A~~Ai~~lng~~~~g--~~i~v 402 (650)
.....|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34456889999999999999999999999999999652 386 9999999999999999999999998 46777
Q ss_pred EEee
Q 006327 403 KLRA 406 (650)
Q Consensus 403 ~~~~ 406 (650)
.++.
T Consensus 97 ~~Ak 100 (124)
T 2e5i_A 97 EYAR 100 (124)
T ss_dssp ECCS
T ss_pred EEec
Confidence 6653
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.2e-14 Score=120.99 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=70.6
Q ss_pred CEEEEcCC----CcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeC----HHH----HHHHHH--hccCCc
Q 006327 151 HEIFIGGL----DRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN----KEH----AKRALT--EMKNPV 216 (650)
Q Consensus 151 ~tlfV~nL----p~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~----~e~----A~~Al~--~l~~~~ 216 (650)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||+++|||||+|.+ .+. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred ccCCcCCCCCCCC
Q 006327 217 ICGKRCGTAPSED 229 (650)
Q Consensus 217 l~g~~i~v~~~~~ 229 (650)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999998876543
No 336
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=109.43 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=63.5
Q ss_pred eeeeecCCCCCCCHHH----HHHHhccc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 329 KTVFLDGVPPHWKENQ----IRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~----l~~~F~~~-G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
+.|||+|||+.+++++ |+++|++| |.|..| ++ |||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999887 55899999 599998 23 999999999999999999999999999999999
Q ss_pred EeeccCC
Q 006327 404 LRARLSN 410 (650)
Q Consensus 404 ~~~~~~~ 410 (650)
++...+.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 8765443
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=116.10 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEE-EEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v-~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
...++|||+|||+++|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 587775544 399999999999999999999999999999887
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7643
No 338
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=1.8e-13 Score=118.51 Aligned_cols=73 Identities=29% Similarity=0.583 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCcC-CCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 149 KEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 149 ~~~tlfV~nLp~~-~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
..++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999998877
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=8.2e-13 Score=126.25 Aligned_cols=123 Identities=14% Similarity=0.251 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCcceeecccCCCCCCCc--cccccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEe
Q 006327 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 361 (650)
Q Consensus 284 ~~e~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 361 (650)
+.+.+..|+.......+.+...+..++.....|...... ......++|||+|||+.+|+++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 456677777655333443433333333221112111100 012245799999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEeecc
Q 006327 362 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (650)
Q Consensus 362 ~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (650)
++. ++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.++..+
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 986 4889999999999999999999755 46999999999887654
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=117.51 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=64.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (650)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|.+||+.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 888888777 7999999999999999999999984 3566655444
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-13 Score=116.12 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCC-eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC-CcccCCcCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN-PVICGKRCGTA 225 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~-V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~-~~l~g~~i~v~ 225 (650)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666652 478999999999999999999999 99999999988
Q ss_pred CCCC
Q 006327 226 PSED 229 (650)
Q Consensus 226 ~~~~ 229 (650)
++..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 7764
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=5.7e-13 Score=110.45 Aligned_cols=71 Identities=13% Similarity=0.350 Sum_probs=59.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC--CCeeEEE
Q 006327 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVK 403 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~ 403 (650)
.+.++|||+|||+++|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+ |++..+. |+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 35689999999999999999999999999999999875 79999999999999983 6777766 5555555
Q ss_pred Ee
Q 006327 404 LR 405 (650)
Q Consensus 404 ~~ 405 (650)
++
T Consensus 80 ~a 81 (89)
T 3d2w_A 80 NA 81 (89)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=4.5e-13 Score=110.54 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=65.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhccc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGY----G-------DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~ 395 (650)
..++|||+|||+.+|+++|+++|++| | .|..|.+.++ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 8999998754 799999999999999999 9999999
Q ss_pred CCCeeEEE
Q 006327 396 SDGNSKVK 403 (650)
Q Consensus 396 ~g~~i~v~ 403 (650)
.|+.|+|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998875
No 344
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.9e-13 Score=112.37 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCC
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (650)
....++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 99999999999999999999984 5689999999999999999999999999999999888
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=7.4e-13 Score=113.15 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCc-----CCCHHHHHHHHhccCCeEEEEEEecCCC-CCCcceEEEEEeCHHHHHHHHHhccCCcccCCc
Q 006327 148 KKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (650)
Q Consensus 148 ~~~~tlfV~nLp~-----~~teedL~~~F~~~G~V~~v~l~~d~~t-g~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (650)
.++++|+|+||.. +.++++|+++|++||.|++|+|++++.+ ++++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4789999999973 3478999999999999999999998654 689999999999999999999999999999999
Q ss_pred CCCCCCC
Q 006327 222 CGTAPSE 228 (650)
Q Consensus 222 i~v~~~~ 228 (650)
|.|..+.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9887664
No 346
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=2.9e-13 Score=111.68 Aligned_cols=71 Identities=18% Similarity=0.459 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~----G-------~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
..++|||+|||+++|+++|+++|++| | .|.+|.+.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998643 899999999999999999 9999999
Q ss_pred cCCcCCCCC
Q 006327 218 CGKRCGTAP 226 (650)
Q Consensus 218 ~g~~i~v~~ 226 (650)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999987753
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=8.3e-13 Score=120.76 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC--CcCCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~ 226 (650)
.-.+|||+||++.+|+++|+++|++||.|+.|+|+.. .++|||||+|.+.++|.+|++.|++..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467899999999999999999999999999999754 367899999999999999999999999976 8898888
Q ss_pred CCCC
Q 006327 227 SEDN 230 (650)
Q Consensus 227 ~~~~ 230 (650)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7653
No 348
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3e-13 Score=116.38 Aligned_cols=65 Identities=23% Similarity=0.454 Sum_probs=59.2
Q ss_pred cCCCCEEEE--cCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 147 IKKEHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 147 ~~~~~tlfV--~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
..+.++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.||+..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 446789999 77999999999999999999999998853 379999999999999999999999887
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1.2e-12 Score=115.16 Aligned_cols=73 Identities=15% Similarity=0.378 Sum_probs=67.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4689999996 69999999999999999999985 468999999999999999999999999999999999875
Q ss_pred c
Q 006327 407 R 407 (650)
Q Consensus 407 ~ 407 (650)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=1e-12 Score=115.77 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcce-EEEEEeCHHHHHHHHHhccCCcccC--CcCCCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTA 225 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~-afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~ 225 (650)
.--.|||+||++.+|+++|+++|++||.|..|+|+.. ++|| |||+|.+.++|.+|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3356779999999999999999999999999998764 3677 9999999999999999999999998 778887
Q ss_pred CCCCC
Q 006327 226 PSEDN 230 (650)
Q Consensus 226 ~~~~~ 230 (650)
.++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 77654
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=5.4e-13 Score=110.59 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=60.0
Q ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCc--ccCCcCC
Q 006327 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCG 223 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~--l~g~~i~ 223 (650)
......+|||+|||+++|+++|+++|++||.|++|+|+++ ++|||||+|.+.++|.+ |++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3447899999999999999999999999999999999764 79999999999999984 34444 4477777
Q ss_pred CCCCCC
Q 006327 224 TAPSED 229 (650)
Q Consensus 224 v~~~~~ 229 (650)
|..+..
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 766543
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.8e-12 Score=110.80 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred cceeeeecCC--CCCCC--------HHHHHHHhcccCCeeEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCe
Q 006327 327 HVKTVFLDGV--PPHWK--------ENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKE 394 (650)
Q Consensus 327 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~--~~~~G~afV~F~~~~~A~~Ai~~lng~~ 394 (650)
++++|.|.|+ |..+. .++|+++|++||.|..|.|+++..+ ++++|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33333 3799999999999999999988765 4689999999999999999999999999
Q ss_pred eCCCeeEEEEee
Q 006327 395 FSDGNSKVKLRA 406 (650)
Q Consensus 395 ~~g~~i~v~~~~ 406 (650)
|.|+.|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999998853
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.2e-12 Score=125.14 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=70.9
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (650)
.++|||+|||+++|+++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999985 58999999999999999999998654 589999998876643
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=2.5e-12 Score=112.79 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=65.4
Q ss_pred EEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcce-EEEEEeCHHHHHHHHHhccCCcccC--CcCCCCCCC
Q 006327 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTAPSE 228 (650)
Q Consensus 152 tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~-afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~~~ 228 (650)
.|||+||++.+|+++|+++|++||.|+.|+|+.. .|| |||+|.+.++|.+|++.||+..|.| +.|+|..+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999652 286 9999999999999999999999988 578887776
Q ss_pred CCC
Q 006327 229 DND 231 (650)
Q Consensus 229 ~~~ 231 (650)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.6e-12 Score=106.27 Aligned_cols=69 Identities=16% Similarity=0.407 Sum_probs=57.9
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--CCCeeEEEE
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDGNSKVKL 404 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~--~g~~i~v~~ 404 (650)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ +++..+ .++.|.|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 4589999999999999999999999999999999865 68999999999999975 455555 565555443
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=1.9e-12 Score=113.86 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=69.6
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
......++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33457899999996 79999999999999999999995 56899999999999999999999999999999998
Q ss_pred CCCCCC
Q 006327 225 APSEDN 230 (650)
Q Consensus 225 ~~~~~~ 230 (650)
.++...
T Consensus 106 ~~a~~~ 111 (121)
T 2bz2_A 106 NIARKQ 111 (121)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 877643
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=1.9e-12 Score=126.46 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=69.9
Q ss_pred ccceeeeecCCCCCC---------CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee-
Q 006327 326 AHVKTVFLDGVPPHW---------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF- 395 (650)
Q Consensus 326 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~- 395 (650)
...++|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 356899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred -----------CCCeeEEEEeeccCCCC
Q 006327 396 -----------SDGNSKVKLRARLSNPM 412 (650)
Q Consensus 396 -----------~g~~i~v~~~~~~~~~~ 412 (650)
.|+.|.|.|+.....|.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999987654443
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.6e-13 Score=110.81 Aligned_cols=75 Identities=27% Similarity=0.489 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCC
Q 006327 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (650)
Q Consensus 148 ~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (650)
...++|||+|||.++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35799999999999999999999999999999999754 789999999999999865432 33457888877766
Q ss_pred CC
Q 006327 228 ED 229 (650)
Q Consensus 228 ~~ 229 (650)
..
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=4.5e-12 Score=110.46 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=70.2
Q ss_pred cceeeeecCCCC--CC---CHHHHHHHhcccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 006327 327 HVKTVFLDGVPP--HW---KENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (650)
Q Consensus 327 ~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~----~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (650)
++++|+|.|+-. ++ .+++|++.|++||.|..|.|+++.. +++++||+||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999843 22 3689999999999999999998865 46788999999999999999999999999999
Q ss_pred CeeEEEEee
Q 006327 398 GNSKVKLRA 406 (650)
Q Consensus 398 ~~i~v~~~~ 406 (650)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999863
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=4.2e-12 Score=124.09 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=70.0
Q ss_pred cCCCCEEEEcCCCcCC---------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 147 IKKEHEIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~---------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
....+||||+||+..+ |+++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3468999999999998 8999999999999999999985 489999999999999999999999999
Q ss_pred ------------cCCcCCCCCCCCC
Q 006327 218 ------------CGKRCGTAPSEDN 230 (650)
Q Consensus 218 ------------~g~~i~v~~~~~~ 230 (650)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8899998887643
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.6e-11 Score=106.50 Aligned_cols=77 Identities=14% Similarity=0.300 Sum_probs=66.3
Q ss_pred cceeeeecCCCCCCC-----------HHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee
Q 006327 327 HVKTVFLDGVPPHWK-----------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~ 395 (650)
++++|+|.||....+ +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+||..|||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 568999999954332 5899999999999999966 443 3799999999999999999999999999
Q ss_pred CCCeeEEEEeec
Q 006327 396 SDGNSKVKLRAR 407 (650)
Q Consensus 396 ~g~~i~v~~~~~ 407 (650)
.|+.|.|.++..
T Consensus 90 ~gr~l~v~~a~~ 101 (112)
T 2dit_A 90 GGRQITAQAWDG 101 (112)
T ss_dssp TTEECEEEECCS
T ss_pred CCcEEEEEEeCC
Confidence 999999988643
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.7e-12 Score=110.71 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=62.5
Q ss_pred ecCCCCCCCHHHHHHHh------------cccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 333 LDGVPPHWKENQIRDQI------------KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 333 V~nLp~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
+.||++.+++++|+++| ++||.|..|.|+++.. ++++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666655 9999999999998854 7899999999999999999999999999999999
Q ss_pred EEEEe
Q 006327 401 KVKLR 405 (650)
Q Consensus 401 ~v~~~ 405 (650)
.|.+.
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98864
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.2e-11 Score=107.16 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=71.0
Q ss_pred ccCCCCEEEEcCCCcCC-----------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC
Q 006327 146 KIKKEHEIFIGGLDRDA-----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~~-----------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
....+++|+|+||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 45578999999995433 26899999999999999966 443 4799999999999999999999999
Q ss_pred CcccCCcCCCCCCCCCCcc
Q 006327 215 PVICGKRCGTAPSEDNDTL 233 (650)
Q Consensus 215 ~~l~g~~i~v~~~~~~~~l 233 (650)
..|.|+.|.|..+......
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999887665443
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=1.4e-11 Score=105.22 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCEEEEcCC--CcCC--------CHHHHHHHHhccCCeEEEEEEecCCC--CCCcceEEEEEeCHHHHHHHHHhccCCc
Q 006327 149 KEHEIFIGGL--DRDA--------TQEDVRKVFERIGEVIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPV 216 (650)
Q Consensus 149 ~~~tlfV~nL--p~~~--------teedL~~~F~~~G~V~~v~l~~d~~t--g~~~G~afV~F~~~e~A~~Al~~l~~~~ 216 (650)
+++.|.|.|+ |.++ ++++|++.|++||.|++|+|+++..+ ++++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6789999998 4444 34789999999999999999988755 4689999999999999999999999999
Q ss_pred ccCCcCCCCCC
Q 006327 217 ICGKRCGTAPS 227 (650)
Q Consensus 217 l~g~~i~v~~~ 227 (650)
+.|+.|.|...
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999887654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.18 E-value=2.8e-11 Score=105.39 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCc-----CCCHHHHHHHHhccCCeEEEEEEecCC----CCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 149 KEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 149 ~~~tlfV~nLp~-----~~teedL~~~F~~~G~V~~v~l~~d~~----tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
++++|+|+||-. +-.+++|++.|++||.|++|+|+++.. +++++|++||+|.+.++|.+|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999942 234689999999999999999999864 45788999999999999999999999999999
Q ss_pred CcCCCCCC
Q 006327 220 KRCGTAPS 227 (650)
Q Consensus 220 ~~i~v~~~ 227 (650)
+.|.|...
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99887654
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=8.7e-12 Score=106.38 Aligned_cols=72 Identities=25% Similarity=0.443 Sum_probs=60.5
Q ss_pred EcCCCcCCCHHHHHHHH------------hccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 155 IGGLDRDATQEDVRKVF------------ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 155 V~nLp~~~teedL~~~F------------~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
+.||++.+|+++|+++| ++||.|++|.|+++. +++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555666666666555 999999999999875 47899999999999999999999999999999999
Q ss_pred CCCCC
Q 006327 223 GTAPS 227 (650)
Q Consensus 223 ~v~~~ 227 (650)
.|..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 87653
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=97.36 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEee
Q 006327 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (650)
Q Consensus 338 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (650)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.++.|+|.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 468999999999999999999998 35799999999999999999987554 679999888753
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=1.9e-10 Score=99.45 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred cceeeeecCCCCCC----------CHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 006327 327 HVKTVFLDGVPPHW----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (650)
Q Consensus 327 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (650)
++++|.|.|+=... .+++|++.|++||.|..|.|.++. ++|||||+|.+.++|.+|++.|||+.|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678888874321 136899999999999999997653 5899999999999999999999999999
Q ss_pred CCeeEEEEee
Q 006327 397 DGNSKVKLRA 406 (650)
Q Consensus 397 g~~i~v~~~~ 406 (650)
|+.|.|.+..
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999864
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=2.4e-10 Score=117.73 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=62.6
Q ss_pred cceeeeecC--CCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeC---CC--e
Q 006327 327 HVKTVFLDG--VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DG--N 399 (650)
Q Consensus 327 ~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~---g~--~ 399 (650)
++++|||+| |++.+|+++|+++|++||.|..|.|+. +||||||+|.+.++|++||+.|||+.+. |+ .
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 568999999 578999999999999999999988753 4799999999999999999999999984 45 3
Q ss_pred eEEEEe
Q 006327 400 SKVKLR 405 (650)
Q Consensus 400 i~v~~~ 405 (650)
+.|.+.
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 455543
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.9e-10 Score=93.46 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=61.4
Q ss_pred CCEEEEcCCC-------cCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcC
Q 006327 150 EHEIFIGGLD-------RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (650)
Q Consensus 150 ~~tlfV~nLp-------~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (650)
..+|.|.-.. ..+|+++|+++|++||.|+.|.|+ ++++|||||+|.+.++|.+|++.+++ +.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5577777655 458999999999999999999997 46899999999999999999997543 678888
Q ss_pred CCCCCCC
Q 006327 223 GTAPSED 229 (650)
Q Consensus 223 ~v~~~~~ 229 (650)
.|.++..
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 8877654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=4.8e-10 Score=115.48 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=59.5
Q ss_pred cCCCCEEEEcC--CCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 147 IKKEHEIFIGG--LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 147 ~~~~~tlfV~n--Lp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
..++++|||+| |++.+|+++|+++|++||+|+.|.|.. ++|||||+|.+.++|++|++.||+..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45789999999 589999999999999999999988742 5799999999999999999999998873
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2e-09 Score=93.08 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=65.7
Q ss_pred ccceeeeecCCCCC-CCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCeeCCCeeE
Q 006327 326 AHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAIN--NKEFSDGNSK 401 (650)
Q Consensus 326 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~-~~~A~~Ai~~ln--g~~~~g~~i~ 401 (650)
.....|+|+||+.. ++.++|+++|++||.|..|.++++.. +|||+|.+ ..+|..|+.+|| +..|.+..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35689999999999 99999999999999999999988754 59999999 899999999995 8889998877
Q ss_pred EEE
Q 006327 402 VKL 404 (650)
Q Consensus 402 v~~ 404 (650)
+++
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=2.1e-09 Score=92.78 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCcCC----------CHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCccc
Q 006327 149 KEHEIFIGGLDRDA----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (650)
Q Consensus 149 ~~~tlfV~nLp~~~----------teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~ 218 (650)
++++|.|.|+=... .+++|++.|++||.|++|.|.++ ..+|+|||+|.+.++|.+|++.||+..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67889999985422 24588999999999999999665 25899999999999999999999999999
Q ss_pred CCcCCCCCC
Q 006327 219 GKRCGTAPS 227 (650)
Q Consensus 219 g~~i~v~~~ 227 (650)
|+.|.|..+
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999877654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=9.2e-09 Score=83.14 Aligned_cols=70 Identities=19% Similarity=0.386 Sum_probs=58.6
Q ss_pred eeeeecCCCC----CCCH----HHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCee
Q 006327 329 KTVFLDGVPP----HWKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (650)
Q Consensus 329 ~~l~V~nLp~----~~t~----~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (650)
.+|+|.-++. .+.. .+|.+.|.+||.|+.++|+.++ +||+|.+.++|.+||+ |||..+.|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 4666666552 2333 6799999999999999998873 8999999999999998 99999999999
Q ss_pred EEEEeec
Q 006327 401 KVKLRAR 407 (650)
Q Consensus 401 ~v~~~~~ 407 (650)
+|.++..
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9998753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=8.1e-09 Score=89.25 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=61.6
Q ss_pred ccCCCCEEEEcCCCcC-CCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeC-HHHHHHHHHhcc--CCcccCCc
Q 006327 146 KIKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN-KEHAKRALTEMK--NPVICGKR 221 (650)
Q Consensus 146 ~~~~~~tlfV~nLp~~-~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~-~e~A~~Al~~l~--~~~l~g~~ 221 (650)
.....+.|+|+||+.+ ++.++|+++|++||+|..|.++++.. +|||.|.+ ..+|..|+.+|+ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3457899999999999 99999999999999999999987743 59999999 899999999984 55666655
Q ss_pred CC
Q 006327 222 CG 223 (650)
Q Consensus 222 i~ 223 (650)
+.
T Consensus 88 ~~ 89 (121)
T 1owx_A 88 VT 89 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.63 E-value=5.3e-08 Score=95.02 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 339 HWKENQIRDQIKGYGDVIRIVLARNM----STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G~i~~v~i~~~~----~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.-.+++|++.|++||.|..|.|+++. .+++++|++||+|.+.++|.+|+..|||+.|.|+.|.|.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 34568999999999999999998654 34589999999999999999999999999999999999875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=2.5e-08 Score=80.98 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=59.0
Q ss_pred ceeeeecCCCCC-----CCH----HHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 328 VKTVFLDGVPPH-----WKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 328 ~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
..+|+|.-++.. +.. .+|.+.|.+||.|+.++|+.++ +||+|.+.++|.+||+ |||..|.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 467888877632 222 5799999999999999999873 9999999999999998 999999999
Q ss_pred eeEEEEe
Q 006327 399 NSKVKLR 405 (650)
Q Consensus 399 ~i~v~~~ 405 (650)
.|+|.++
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999865
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=5.4e-08 Score=78.65 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCCEEEEcCCC----cCCCH----HHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 149 KEHEIFIGGLD----RDATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 149 ~~~tlfV~nLp----~~~te----edL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
+..||+|.-++ .++-. .+|.+.|.+||+|..|+|+.++ +||+|.+.++|.+|++ |++..|.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 56788888776 23333 5799999999999999998763 8999999999999998 999999999
Q ss_pred cCCCCCCC
Q 006327 221 RCGTAPSE 228 (650)
Q Consensus 221 ~i~v~~~~ 228 (650)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99887654
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.4e-07 Score=76.50 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=60.7
Q ss_pred cCCCCEEEEcCCCcC-----CCH----HHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcc
Q 006327 147 IKKEHEIFIGGLDRD-----ATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~-----~te----edL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l 217 (650)
-.+..||+|.-++.. +-. .+|.+.|.+||.|..|+|+.++ +||+|.+.++|.+||+ |++..|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 346789999988732 322 4689999999999999998873 9999999999999998 999999
Q ss_pred cCCcCCCCCC
Q 006327 218 CGKRCGTAPS 227 (650)
Q Consensus 218 ~g~~i~v~~~ 227 (650)
.|+.|+|...
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999987653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.34 E-value=5.3e-07 Score=87.86 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCc-----CCCHHHHHHHHhccCCeEEEEEEecCC----CCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 149 KEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 149 ~~~tlfV~nLp~-----~~teedL~~~F~~~G~V~~v~l~~d~~----tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
....|.+.|+-. +-.+++|.+.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|++..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 455666666632 345678999999999999999996644 45899999999999999999999999999999
Q ss_pred CcCCCCCCC
Q 006327 220 KRCGTAPSE 228 (650)
Q Consensus 220 ~~i~v~~~~ 228 (650)
+.|.+....
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999876543
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=3e-06 Score=70.04 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=65.0
Q ss_pred ceeeeecCCCCCCCHHHHHHHhccc-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
.++|-|-|||..+++..|+.+.+++ |.|+.|.+..+. +-|+|+|.+...|.+|..+|||.+|.|+.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4789999999999999999999999 999999998884 46999999999999999999999999999888
Q ss_pred E
Q 006327 403 K 403 (650)
Q Consensus 403 ~ 403 (650)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 6
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.1e-05 Score=66.56 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=66.7
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhcc-----CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~-----G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
......++|-|-|||..++...|+.+++.+ |.|+.|.|+.+ -+=|+|+|.+...|-+|.-+|++..|.|
T Consensus 16 ~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 16 NSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp CTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecC
Confidence 344568999999999999999999999999 99999999877 3469999999999999999999999999
Q ss_pred CcCCCC
Q 006327 220 KRCGTA 225 (650)
Q Consensus 220 ~~i~v~ 225 (650)
++|++.
T Consensus 90 r~Lr~g 95 (117)
T 2l9w_A 90 KVIRSG 95 (117)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 887653
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.00011 Score=60.42 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhcc-----CCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~-----G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (650)
..++|.|.|||.++.++.|.-+|+.- |+|..|.... +.|+|+|.+.+.|++.|+. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 56899999999999999999999871 5899988743 4799999999999999974 46678888888
Q ss_pred CCCC--CCCCcceeCCcCCCcc
Q 006327 224 TAPS--EDNDTLFVGNICNTWT 243 (650)
Q Consensus 224 v~~~--~~~~~l~v~nLp~~~t 243 (650)
|.+. ....+|++.+|++.++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 7654 4578999999998764
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0035 Score=51.49 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=67.3
Q ss_pred CCCcceeCCcCCCccHHHHHHHHhh---cCCcceEEEEEeccccccCCCcceEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006327 229 DNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (650)
Q Consensus 229 ~~~~l~v~nLp~~~te~~l~~~F~~---~G~~~i~~i~i~~d~~~~g~srG~aFV~F~~~e~A~~A~~~l~~~~~~~g~~ 305 (650)
...+|.|.|||..+.++.|.-+|+. .|-..|..+.... +-|+|+|.+...|+++++. ..+.+ .
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k-~~H~L----~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ-ADHEL----H 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC-SCCBS----S
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC-Cccee----c
Confidence 3578999999999999999999998 3544488888754 4689999999999999863 12223 2
Q ss_pred CcceeecccCCCCCCCccccccceeeeecCCCCCCC
Q 006327 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341 (650)
Q Consensus 306 ~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t 341 (650)
+..|.|.-..+. ...+|++.+|++.++
T Consensus 73 ~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 73 GAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp SSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred CeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 566666543332 347899999998775
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.83 E-value=0.0015 Score=53.96 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=62.2
Q ss_pred ceeeeecCCCCCC-C----HHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEE
Q 006327 328 VKTVFLDGVPPHW-K----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (650)
Q Consensus 328 ~~~l~V~nLp~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (650)
.++|+|.||+..+ + .+.++++|.+|+.+.....++.. .-..|.|.+.++|.+|-..|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3789999998865 2 25778999999988887777653 25799999999999999999999999999999
Q ss_pred EEee
Q 006327 403 KLRA 406 (650)
Q Consensus 403 ~~~~ 406 (650)
-+..
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9875
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.77 E-value=0.0045 Score=50.19 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=57.4
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCC--CcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~--~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
.+|.|++||+.+|++++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.+++..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999998887777766544322 335699999999999999999998776543
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.62 E-value=0.0082 Score=48.67 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=58.0
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~--~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
++|.|++||+.+|++++.+.+.....+.....+....+.. .-..|+|.|.+.+++....+.++|+.|-+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999998877776665543322 345699999999999999999999988754
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.0021 Score=53.09 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCEEEEcCCCcCC-C----HHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCC
Q 006327 150 EHEIFIGGLDRDA-T----QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (650)
Q Consensus 150 ~~tlfV~nLp~~~-t----eedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (650)
.++|+|.||+.++ + .+.++++|..|+++......+. -.-..|.|.+.++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4799999998865 2 2578999999999888777644 345899999999999999999999999998876
Q ss_pred CCCC
Q 006327 225 APSE 228 (650)
Q Consensus 225 ~~~~ 228 (650)
-.++
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5543
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.52 E-value=0.0057 Score=49.56 Aligned_cols=58 Identities=19% Similarity=0.417 Sum_probs=46.9
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~ 213 (650)
..-...++| ++|.++...||.++|+.||-| .|.-+-| ..|||.|.+.+.|..||..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 334566777 999999999999999999955 4555444 279999999999999999763
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.41 E-value=0.0067 Score=49.17 Aligned_cols=55 Identities=16% Similarity=0.428 Sum_probs=45.5
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (650)
...++| ++|..+...||.++|+.||.| .|..+.|. -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 356677 999999999999999999843 45565552 69999999999999998764
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0054 Score=49.89 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=46.1
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (650)
...++| ++|..+...||.++|+.|| -..|..+.|. -|||.|.+++.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456777 9999999999999999998 4456666552 69999999999999998775
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.14 E-value=0.019 Score=48.76 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=53.3
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (650)
..+.|.|-++|... ...|..+|++||.|...... ....+..|.|.+..+|++||. .||..|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 35788999999875 66788899999999988762 124589999999999999997 6999998643
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.59 E-value=0.038 Score=46.91 Aligned_cols=63 Identities=11% Similarity=0.294 Sum_probs=52.7
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g 219 (650)
..+.|.|-+.|... -..|..+|++||.|+..... ....+-.|.|.+..+|++||. .|+..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 46899999999986 55788999999999988762 235689999999999999998 48888764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.018 Score=46.85 Aligned_cols=54 Identities=20% Similarity=0.421 Sum_probs=44.2
Q ss_pred CEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhcc
Q 006327 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (650)
Q Consensus 151 ~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~ 213 (650)
..++| ++|.++.-.||.++|+.||-| .|.-+-| ..|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999944 4555444 279999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.29 E-value=0.017 Score=47.07 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=52.0
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCC--CCcceEEEEEeCHHHHHHHHHhccCCcccCC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg--~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (650)
.+-+|.|+.||+.+|++++.+.+..+=++.....+....+. ..-.-|||.|.+.+++....+..++..+...
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45689999999999999988887776554433333222221 1224699999999999999999988766543
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.80 E-value=0.007 Score=64.33 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=45.9
Q ss_pred hccCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHh
Q 006327 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (650)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~ 211 (650)
++.+..++|||. .|..+++.+|.++|++||+|.++.+.++. .-||.|+|.+.+++..++..
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 333457899997 79999999999999999999999997542 36999999999999987754
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.79 E-value=0.038 Score=45.02 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=53.0
Q ss_pred cceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 006327 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA--KRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (650)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (650)
.+-+|.|+.||+.+|++++.+.+...-.+.....+....+. ..-..|+|.|.+.+++..-.+.++|+.|-+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 34689999999999999988888776554433333222221 1234589999999999999999999988754
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.25 E-value=0.062 Score=46.22 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=51.3
Q ss_pred CCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEE-EEec--------CCCC-----CCcceEEEEEeCHHHHHHHHHhccC
Q 006327 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR-LHKN--------FSTN-----RNKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 149 ~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~-l~~d--------~~tg-----~~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
.+..|.|-+.|...+. .|..+|++||.|.+-. +.+. +.+. .......|+|.+..+|.+||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888888776655 7888999999986622 1110 0001 134677999999999999998 489
Q ss_pred CcccCCcCCCCC
Q 006327 215 PVICGKRCGTAP 226 (650)
Q Consensus 215 ~~l~g~~i~v~~ 226 (650)
.+|.|.-|-|.+
T Consensus 84 ~ii~G~mIGV~P 95 (132)
T 3p3d_A 84 AVFNGVLLGVIP 95 (132)
T ss_dssp CEETTEECEEEE
T ss_pred eEeCcEEEEEEE
Confidence 888886554444
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.88 E-value=0.23 Score=42.69 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=51.5
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccCCeeEE-EEeecC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhCCCe
Q 006327 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNM--------STA-----KRKDYGFIDFSTHEAAVACINAINNKE 394 (650)
Q Consensus 329 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~--------~~~-----~~~G~afV~F~~~~~A~~Ai~~lng~~ 394 (650)
..|.|-+.|...++ .+.+.|++||.|..- .+.... ... ....+..|+|.+..+|.+||. .||+.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 56788888776655 466789999998662 221100 000 135688999999999999996 79999
Q ss_pred eCCCeeEEEE
Q 006327 395 FSDGNSKVKL 404 (650)
Q Consensus 395 ~~g~~i~v~~ 404 (650)
|.|..|=|..
T Consensus 86 i~G~mIGV~P 95 (132)
T 3p3d_A 86 FNGVLLGVIP 95 (132)
T ss_dssp ETTEECEEEE
T ss_pred eCcEEEEEEE
Confidence 9996555543
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.50 E-value=0.13 Score=54.66 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=41.1
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (650)
.+.|+|. .|..+++.+|.++|++||.|..+.+-.+. .-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4689997 79999999999999999999998876542 3599999999999987754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.42 E-value=5.9 Score=42.69 Aligned_cols=55 Identities=18% Similarity=0.443 Sum_probs=44.5
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (650)
...++|+ +|..+...+|.+.|+.||. ..|.++.+ -.|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3566666 9999999999999999995 34555443 269999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.82 E-value=5 Score=43.26 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=45.4
Q ss_pred CCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccC
Q 006327 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (650)
Q Consensus 150 ~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~ 214 (650)
...++|+ +|..+...+|.++|+.||.| .|+.+-+ ..|||.|.+.+.|..++++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 89999999999999999964 5555332 3699999999999999998753
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.78 E-value=1.4e+02 Score=23.31 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=47.6
Q ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHhccCCeEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhc
Q 006327 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (650)
Q Consensus 147 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l 212 (650)
.+..+-|-|-|||..+-..++.-.....|---.|..+ .|-|.|.|.+.++...|++.|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3467889999999999999998888888865566553 346999999999999999885
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=35.20 E-value=1.6e+02 Score=22.96 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=46.7
Q ss_pred ceeeeecCCCCCCCHHHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006327 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (650)
Q Consensus 328 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (650)
.+-|.|-|+|..+-..++.-.....|--..|..+ .|-|.|.|.+.++..-||.+|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 3667899999999998888888888877778775 3469999999999999998874
No 405
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.17 E-value=9 Score=39.22 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=8.7
Q ss_pred CCCHHHHHHHhcc
Q 006327 339 HWKENQIRDQIKG 351 (650)
Q Consensus 339 ~~t~~~l~~~F~~ 351 (650)
.+++++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4677777776654
No 406
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=31.61 E-value=16 Score=40.32 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=3.8
Q ss_pred HHHHHHhc
Q 006327 166 DVRKVFER 173 (650)
Q Consensus 166 dL~~~F~~ 173 (650)
.|..+|..
T Consensus 385 ~Ll~~F~~ 392 (649)
T 3tj1_A 385 TLTTLFKT 392 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34445544
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=31.40 E-value=97 Score=23.15 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCHHHHHHHhcccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeeCCCeeEEEEe
Q 006327 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (650)
Q Consensus 339 ~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (650)
.+...+|..++..-+ .|-.|.|..+ |.||+-.... |..++..|++..+.|+.+.|+..
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 456667777666544 3456666433 7888876544 66778889999999999887653
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.78 E-value=2.2e+02 Score=22.28 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=35.0
Q ss_pred eEEEEEEecCCCCCCcceEEEEEeCHHHHHHHHHhccCCcccCCcCCCCCCCCCCcceeCCcCCCccHHHHHHHHh
Q 006327 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLK 252 (650)
Q Consensus 177 V~~v~l~~d~~tg~~~G~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nLp~~~te~~l~~~F~ 252 (650)
|..|.+.. ...||.||++...++...++..+.+. +-||++ .++.+++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 55665532 37999999999998888888654432 223443 577777777664
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.71 E-value=93 Score=27.84 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.4
Q ss_pred CEEEEcCCCc-C--------CCHHHHHHHH--hccCCeEEEEEEecCCCCCCcceEEEEEeCHHHH
Q 006327 151 HEIFIGGLDR-D--------ATQEDVRKVF--ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205 (650)
Q Consensus 151 ~tlfV~nLp~-~--------~teedL~~~F--~~~G~V~~v~l~~d~~tg~~~G~afV~F~~~e~A 205 (650)
-++.|-|+|. . .....|++.| ..|.++. |+.+.+. .-+.|+|.|.|.+.-..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 3677888887 2 3457899977 9999876 4444442 34789999999875443
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.60 E-value=19 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=17.4
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCcccEEEEEeC
Q 006327 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFS 378 (650)
Q Consensus 343 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~F~ 378 (650)
+++.++|...|.|++... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455667777777665543 5889999875
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.55 E-value=2.4e+02 Score=25.19 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=38.9
Q ss_pred eeeeecCCCC-C--------CCHHHHHHHh--cccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 006327 329 KTVFLDGVPP-H--------WKENQIRDQI--KGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACIN 388 (650)
Q Consensus 329 ~~l~V~nLp~-~--------~t~~~l~~~F--~~~G~i~~v~i~~~~~~~~~~G~afV~F~~-~~~A~~Ai~ 388 (650)
..+.|-|+|. . .+...|++.| +.|..+. |..+.+. ...+|++.|.|.+ ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4667777776 2 3447899977 9998765 5555554 2478999999985 444455554
No 412
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=21.17 E-value=29 Score=38.23 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=3.4
Q ss_pred HHHHHhcc
Q 006327 167 VRKVFERI 174 (650)
Q Consensus 167 L~~~F~~~ 174 (650)
+..++..|
T Consensus 383 f~~Ll~~F 390 (649)
T 3tj1_A 383 FNTLTTLF 390 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
Done!