Query 006330
Match_columns 650
No_of_seqs 533 out of 3370
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 21:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 7E-87 1.5E-91 767.7 59.6 481 147-649 37-545 (659)
2 KOG0061 Transporter, ABC super 100.0 1E-87 2.2E-92 767.7 50.6 471 147-649 23-496 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 9.5E-82 2.1E-86 723.5 53.1 476 149-649 17-499 (617)
4 PLN03140 ABC transporter G fam 100.0 3.3E-79 7.3E-84 750.0 56.2 475 146-649 864-1354(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 3.7E-78 8E-83 742.6 51.0 461 169-649 73-559 (1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-77 5.5E-82 735.2 54.3 468 149-649 759-1243(1394)
7 KOG0065 Pleiotropic drug resis 100.0 2.2E-78 4.9E-83 703.6 32.5 463 150-646 788-1259(1391)
8 PLN03140 ABC transporter G fam 100.0 1.6E-76 3.5E-81 726.3 49.6 463 168-649 176-676 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 5E-67 1.1E-71 608.9 37.2 461 169-648 127-597 (1391)
10 KOG0058 Peptide exporter, ABC 100.0 5.3E-64 1.2E-68 557.6 9.6 358 8-385 313-691 (716)
11 COG1126 GlnQ ABC-type polar am 100.0 1.9E-54 4.2E-59 421.5 24.9 218 149-384 2-224 (240)
12 KOG0055 Multidrug/pheromone ex 100.0 6.7E-55 1.5E-59 508.6 16.1 361 8-385 196-576 (1228)
13 KOG0055 Multidrug/pheromone ex 100.0 1.6E-53 3.5E-58 497.0 12.6 358 9-385 834-1213(1228)
14 COG1125 OpuBA ABC-type proline 100.0 1.4E-51 3.1E-56 408.7 22.3 233 149-411 1-239 (309)
15 COG2274 SunT ABC-type bacterio 100.0 1.9E-52 4.2E-57 480.4 14.3 362 10-386 320-697 (709)
16 COG1135 AbcC ABC-type metal io 100.0 9.7E-51 2.1E-55 413.7 22.7 222 149-384 1-230 (339)
17 COG1127 Ttg2A ABC-type transpo 100.0 8.5E-50 1.8E-54 394.4 23.1 221 148-385 7-235 (263)
18 COG1131 CcmA ABC-type multidru 100.0 2.9E-49 6.2E-54 415.2 26.9 222 149-389 4-230 (293)
19 COG1120 FepC ABC-type cobalami 100.0 1.4E-49 3E-54 404.3 21.8 220 149-384 2-227 (258)
20 COG3839 MalK ABC-type sugar tr 100.0 4.5E-49 9.8E-54 414.7 24.6 218 149-385 3-223 (338)
21 COG3842 PotA ABC-type spermidi 100.0 2.3E-49 4.9E-54 419.0 22.4 233 148-406 4-239 (352)
22 COG1116 TauB ABC-type nitrate/ 100.0 5.8E-49 1.3E-53 393.3 23.5 204 149-372 3-207 (248)
23 COG1132 MdlB ABC-type multidru 100.0 4.1E-50 8.9E-55 458.2 14.4 356 8-385 177-552 (567)
24 COG1136 SalX ABC-type antimicr 100.0 2.7E-48 5.9E-53 387.7 25.4 210 150-374 2-220 (226)
25 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.3E-48 5E-53 393.6 24.3 219 148-385 3-227 (254)
26 TIGR00958 3a01208 Conjugate Tr 100.0 9.2E-50 2E-54 465.9 13.0 351 9-385 327-702 (711)
27 PRK11174 cysteine/glutathione 100.0 2.8E-49 6E-54 453.2 15.8 215 149-385 349-572 (588)
28 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.3E-49 5E-54 461.4 15.0 347 10-385 302-673 (686)
29 COG3638 ABC-type phosphate/pho 100.0 3E-48 6.5E-53 382.5 20.0 223 149-386 3-238 (258)
30 PTZ00265 multidrug resistance 100.0 1.7E-49 3.7E-54 489.8 13.1 354 15-385 1015-1452(1466)
31 COG1118 CysA ABC-type sulfate/ 100.0 7.1E-48 1.5E-52 391.9 21.0 220 149-385 2-227 (345)
32 COG1117 PstB ABC-type phosphat 100.0 1.2E-47 2.6E-52 372.4 19.7 232 148-404 6-248 (253)
33 PRK13537 nodulation ABC transp 100.0 1.2E-46 2.6E-51 398.2 29.1 219 148-385 6-227 (306)
34 COG4555 NatA ABC-type Na+ tran 100.0 1E-47 2.2E-52 369.6 18.2 220 149-386 1-223 (245)
35 COG2884 FtsE Predicted ATPase 100.0 2.1E-47 4.6E-52 364.6 20.0 213 149-379 1-220 (223)
36 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-48 2.5E-53 457.3 13.6 354 10-385 320-700 (710)
37 TIGR03375 type_I_sec_LssB type 100.0 1.5E-48 3.3E-53 455.1 14.1 353 10-386 312-689 (694)
38 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-46 5E-51 400.6 29.0 221 149-384 1-229 (343)
39 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-48 3.2E-53 456.2 13.1 352 9-385 321-697 (708)
40 PRK11176 lipid transporter ATP 100.0 2.3E-48 5E-53 445.1 14.2 357 9-385 191-567 (582)
41 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-46 5.8E-51 380.6 26.8 217 150-384 1-225 (235)
42 TIGR03265 PhnT2 putative 2-ami 100.0 4.1E-46 8.8E-51 400.8 28.7 218 149-385 4-224 (353)
43 PRK11650 ugpC glycerol-3-phosp 100.0 4.3E-46 9.4E-51 401.0 28.7 218 149-384 3-223 (356)
44 KOG0057 Mitochondrial Fe/S clu 100.0 1.9E-48 4.2E-53 420.4 9.7 221 148-385 350-574 (591)
45 PRK11160 cysteine/glutathione 100.0 5.9E-48 1.3E-52 440.9 14.1 349 9-385 187-562 (574)
46 PRK11432 fbpC ferric transport 100.0 6.4E-46 1.4E-50 398.8 29.0 217 149-384 6-225 (351)
47 TIGR03258 PhnT 2-aminoethylpho 100.0 1.3E-45 2.8E-50 397.7 28.7 218 149-385 5-228 (362)
48 PRK13536 nodulation factor exp 100.0 1.8E-45 4E-50 393.8 29.4 220 148-386 40-262 (340)
49 COG1124 DppF ABC-type dipeptid 100.0 4.2E-46 9E-51 369.8 22.5 221 149-385 3-231 (252)
50 COG1122 CbiO ABC-type cobalt t 100.0 9.3E-46 2E-50 375.1 24.6 218 149-385 3-228 (235)
51 PRK10851 sulfate/thiosulfate t 100.0 2.5E-45 5.4E-50 394.7 28.8 220 149-384 2-225 (353)
52 PRK09452 potA putrescine/sperm 100.0 2.8E-45 6.1E-50 396.6 29.1 218 148-384 13-233 (375)
53 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-47 8.3E-52 431.8 15.0 355 11-385 169-542 (544)
54 TIGR01846 type_I_sec_HlyB type 100.0 5E-47 1.1E-51 442.4 15.4 351 10-385 305-680 (694)
55 cd03265 ABC_DrrA DrrA is the A 100.0 3.4E-45 7.4E-50 368.9 26.6 215 150-383 1-219 (220)
56 cd03219 ABC_Mj1267_LivG_branch 100.0 2.9E-45 6.2E-50 373.0 26.3 219 150-384 1-231 (236)
57 TIGR01288 nodI ATP-binding ABC 100.0 4.9E-45 1.1E-49 385.5 28.6 218 149-385 4-224 (303)
58 PRK11607 potG putrescine trans 100.0 6.4E-45 1.4E-49 394.3 29.9 219 148-385 18-239 (377)
59 TIGR00960 3a0501s02 Type II (G 100.0 2.5E-45 5.4E-50 368.7 24.8 208 150-374 2-216 (216)
60 PRK11153 metN DL-methionine tr 100.0 5.5E-45 1.2E-49 391.2 28.7 220 150-384 2-229 (343)
61 cd03296 ABC_CysA_sulfate_impor 100.0 5.6E-45 1.2E-49 372.0 27.1 220 149-384 2-225 (239)
62 cd03259 ABC_Carb_Solutes_like 100.0 4.3E-45 9.4E-50 366.2 25.6 210 150-378 1-213 (213)
63 PRK10790 putative multidrug tr 100.0 9.5E-47 2.1E-51 432.6 15.1 344 10-385 192-563 (592)
64 PRK13643 cbiO cobalt transport 100.0 1E-44 2.2E-49 380.5 29.1 235 149-398 1-249 (288)
65 PRK10789 putative multidrug tr 100.0 8E-47 1.7E-51 431.2 14.3 350 10-385 164-538 (569)
66 cd03218 ABC_YhbG The ABC trans 100.0 5.5E-45 1.2E-49 369.9 26.2 216 150-384 1-221 (232)
67 cd03258 ABC_MetN_methionine_tr 100.0 5.8E-45 1.3E-49 370.2 26.1 220 150-384 2-229 (233)
68 PRK11000 maltose/maltodextrin 100.0 7.6E-45 1.7E-49 393.5 28.7 218 149-385 3-223 (369)
69 cd03269 ABC_putative_ATPase Th 100.0 4.8E-45 1E-49 365.1 24.9 210 150-378 1-210 (210)
70 cd03260 ABC_PstB_phosphate_tra 100.0 4E-45 8.7E-50 369.9 24.2 217 150-382 1-226 (227)
71 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.3E-45 1.8E-49 366.1 26.1 216 150-381 1-219 (220)
72 cd03263 ABC_subfamily_A The AB 100.0 6.9E-45 1.5E-49 366.3 25.3 216 150-383 1-219 (220)
73 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-46 2.6E-51 429.9 13.9 354 11-385 182-556 (571)
74 cd03256 ABC_PhnC_transporter A 100.0 8.1E-45 1.8E-49 370.6 25.0 220 150-384 1-233 (241)
75 COG3840 ThiQ ABC-type thiamine 100.0 2.5E-45 5.4E-50 347.9 19.3 214 150-384 2-218 (231)
76 PRK13637 cbiO cobalt transport 100.0 3.2E-44 6.9E-49 376.5 29.8 222 149-385 2-234 (287)
77 cd03266 ABC_NatA_sodium_export 100.0 1.4E-44 3.1E-49 363.5 25.9 214 150-378 2-218 (218)
78 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-44 2.8E-49 362.6 25.5 210 150-378 1-213 (213)
79 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-44 3.5E-49 369.3 26.5 216 150-384 1-224 (242)
80 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-44 4.4E-49 380.4 28.0 217 149-385 2-221 (301)
81 cd03224 ABC_TM1139_LivF_branch 100.0 1E-44 2.2E-49 365.4 24.6 214 150-384 1-220 (222)
82 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-44 4.5E-49 367.9 27.1 217 150-384 2-224 (240)
83 TIGR02315 ABC_phnC phosphonate 100.0 9.6E-45 2.1E-49 370.7 24.4 219 150-383 2-233 (243)
84 PRK11264 putative amino-acid A 100.0 2.7E-44 5.9E-49 369.1 27.7 218 149-384 3-232 (250)
85 TIGR01188 drrA daunorubicin re 100.0 1.4E-44 3E-49 381.9 26.1 207 169-386 5-214 (302)
86 PRK13657 cyclic beta-1,2-gluca 100.0 4.2E-46 9.1E-51 427.0 15.7 354 10-385 183-558 (588)
87 PRK13634 cbiO cobalt transport 100.0 3.6E-44 7.8E-49 376.6 28.8 232 149-395 2-248 (290)
88 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-44 3.7E-49 392.9 26.9 220 149-384 3-227 (402)
89 PRK11831 putative ABC transpor 100.0 3.2E-44 6.9E-49 373.1 27.6 218 149-384 7-232 (269)
90 PRK13631 cbiO cobalt transport 100.0 4.9E-44 1.1E-48 380.1 29.7 233 148-395 20-278 (320)
91 PRK13647 cbiO cobalt transport 100.0 5.1E-44 1.1E-48 372.5 29.0 217 149-383 4-225 (274)
92 TIGR02868 CydC thiol reductant 100.0 2.8E-46 6E-51 423.3 12.0 323 12-355 183-529 (529)
93 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-44 4.5E-49 362.4 23.8 209 150-374 1-218 (218)
94 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-44 5.2E-49 359.5 23.9 206 150-378 1-208 (208)
95 COG1137 YhbG ABC-type (unclass 100.0 1E-45 2.2E-50 355.5 13.2 219 149-384 4-227 (243)
96 TIGR00972 3a0107s01c2 phosphat 100.0 7E-44 1.5E-48 365.6 27.6 215 150-384 2-231 (247)
97 PRK13650 cbiO cobalt transport 100.0 8.4E-44 1.8E-48 371.8 28.6 228 149-393 4-240 (279)
98 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-43 2.2E-48 362.1 28.1 216 150-385 2-221 (236)
99 PRK10895 lipopolysaccharide AB 100.0 5.1E-44 1.1E-48 365.2 25.9 218 149-384 3-225 (241)
100 PRK10619 histidine/lysine/argi 100.0 9.1E-44 2E-48 367.0 27.9 218 149-384 5-240 (257)
101 PRK11629 lolD lipoprotein tran 100.0 1.1E-43 2.4E-48 361.1 27.4 216 149-380 5-229 (233)
102 cd03234 ABCG_White The White s 100.0 9.9E-44 2.1E-48 359.8 26.9 221 149-378 3-226 (226)
103 KOG0056 Heavy metal exporter H 100.0 1.7E-45 3.7E-50 389.7 14.5 223 147-385 535-761 (790)
104 TIGR01186 proV glycine betaine 100.0 6.4E-44 1.4E-48 384.0 26.9 207 168-385 4-219 (363)
105 TIGR02673 FtsE cell division A 100.0 6.1E-44 1.3E-48 357.9 24.9 206 150-373 2-214 (214)
106 PRK13651 cobalt transporter AT 100.0 1.4E-43 3.1E-48 374.4 28.9 221 149-384 2-253 (305)
107 PRK14247 phosphate ABC transpo 100.0 1.4E-43 3.1E-48 363.8 28.1 224 149-384 3-233 (250)
108 TIGR01978 sufC FeS assembly AT 100.0 9.7E-44 2.1E-48 363.1 26.5 220 150-383 1-232 (243)
109 TIGR02204 MsbA_rel ABC transpo 100.0 1.9E-45 4.1E-50 420.5 15.3 353 9-385 184-563 (576)
110 PRK15079 oligopeptide ABC tran 100.0 1.1E-43 2.4E-48 379.0 27.8 228 148-384 7-250 (331)
111 PRK11614 livF leucine/isoleuci 100.0 7.5E-44 1.6E-48 363.1 25.4 215 149-384 5-225 (237)
112 PRK13636 cbiO cobalt transport 100.0 1.4E-43 3.1E-48 370.8 28.1 218 149-385 5-231 (283)
113 PRK14273 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 364.6 27.8 219 148-384 6-237 (254)
114 TIGR01192 chvA glucan exporter 100.0 1.9E-45 4.1E-50 421.0 15.0 354 11-385 184-558 (585)
115 PRK11124 artP arginine transpo 100.0 1.4E-43 3.1E-48 362.2 27.2 216 149-383 2-228 (242)
116 PRK13646 cbiO cobalt transport 100.0 1.3E-43 2.9E-48 371.6 27.7 222 149-385 2-235 (286)
117 cd03264 ABC_drug_resistance_li 100.0 5.8E-44 1.3E-48 357.5 23.8 208 150-378 1-211 (211)
118 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-43 2.6E-48 365.0 26.7 217 150-384 1-235 (252)
119 PRK14242 phosphate transporter 100.0 1.7E-43 3.7E-48 363.9 27.9 224 147-384 4-236 (253)
120 PRK14268 phosphate ABC transpo 100.0 1.8E-43 3.9E-48 365.1 27.9 222 148-384 11-241 (258)
121 cd03292 ABC_FtsE_transporter F 100.0 8.1E-44 1.8E-48 356.8 24.6 207 150-374 1-214 (214)
122 PRK13641 cbiO cobalt transport 100.0 1.7E-43 3.6E-48 371.0 27.8 221 149-384 2-233 (287)
123 PRK09473 oppD oligopeptide tra 100.0 2.4E-43 5.3E-48 376.3 28.9 228 148-385 11-251 (330)
124 COG4988 CydD ABC-type transpor 100.0 2.3E-44 4.9E-49 394.3 21.4 216 147-385 318-543 (559)
125 PRK13635 cbiO cobalt transport 100.0 2.6E-43 5.7E-48 368.1 28.4 219 149-385 5-229 (279)
126 PRK11022 dppD dipeptide transp 100.0 2.6E-43 5.6E-48 375.6 28.8 227 149-384 3-242 (326)
127 PRK13638 cbiO cobalt transport 100.0 3E-43 6.5E-48 366.1 28.6 216 150-384 2-224 (271)
128 PRK14267 phosphate ABC transpo 100.0 3E-43 6.5E-48 362.1 28.0 224 149-384 4-236 (253)
129 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-43 4.1E-48 357.4 25.6 215 150-378 2-228 (228)
130 COG4618 ArpD ABC-type protease 100.0 1.7E-45 3.6E-50 394.2 10.9 359 15-388 191-563 (580)
131 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-43 2.5E-48 369.0 24.3 215 151-384 26-249 (269)
132 TIGR03411 urea_trans_UrtD urea 100.0 3.4E-43 7.3E-48 359.2 27.4 219 149-384 2-230 (242)
133 PRK11248 tauB taurine transpor 100.0 2.7E-43 5.8E-48 363.5 26.8 212 150-381 2-216 (255)
134 cd03262 ABC_HisP_GlnQ_permease 100.0 1.5E-43 3.2E-48 354.7 24.2 207 150-374 1-213 (213)
135 PRK14245 phosphate ABC transpo 100.0 4.1E-43 8.9E-48 360.6 27.8 223 148-384 2-233 (250)
136 cd03226 ABC_cobalt_CbiO_domain 100.0 1.1E-43 2.3E-48 354.2 22.7 202 151-375 1-205 (205)
137 PRK13649 cbiO cobalt transport 100.0 5.1E-43 1.1E-47 366.0 28.8 221 149-384 2-233 (280)
138 PRK13548 hmuV hemin importer A 100.0 2.9E-43 6.2E-48 363.7 26.6 217 149-384 2-229 (258)
139 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-43 5.1E-48 355.4 25.3 210 150-375 2-220 (221)
140 PRK10908 cell division protein 100.0 2.9E-43 6.3E-48 355.3 26.0 208 150-375 2-216 (222)
141 PRK13644 cbiO cobalt transport 100.0 2.8E-43 6.1E-48 367.0 26.7 216 150-384 2-223 (274)
142 COG0411 LivG ABC-type branched 100.0 4.9E-44 1.1E-48 355.3 19.8 220 149-384 4-238 (250)
143 PRK11300 livG leucine/isoleuci 100.0 4.2E-43 9.1E-48 361.3 27.3 220 149-384 5-242 (255)
144 PRK11308 dppF dipeptide transp 100.0 4.9E-43 1.1E-47 373.5 28.5 227 149-385 5-244 (327)
145 PRK15093 antimicrobial peptide 100.0 4.7E-43 1E-47 374.5 28.4 229 149-384 3-247 (330)
146 PRK13648 cbiO cobalt transport 100.0 7.6E-43 1.7E-47 362.7 29.2 218 149-384 7-230 (269)
147 PRK09984 phosphonate/organopho 100.0 3.8E-43 8.2E-48 363.4 26.6 221 149-383 4-240 (262)
148 PRK10744 pstB phosphate transp 100.0 5.7E-43 1.2E-47 361.8 27.8 224 147-384 11-243 (260)
149 PRK14269 phosphate ABC transpo 100.0 4.8E-43 1E-47 359.4 27.0 223 149-384 2-229 (246)
150 PRK13652 cbiO cobalt transport 100.0 5.5E-43 1.2E-47 365.3 27.9 218 149-385 3-227 (277)
151 PRK10070 glycine betaine trans 100.0 5E-43 1.1E-47 381.2 28.6 203 171-384 42-253 (400)
152 PRK11247 ssuB aliphatic sulfon 100.0 3E-43 6.5E-48 363.4 25.5 207 149-381 12-219 (257)
153 COG0410 LivF ABC-type branched 100.0 1.9E-43 4.2E-48 348.6 22.8 216 149-384 3-225 (237)
154 PRK11231 fecE iron-dicitrate t 100.0 2.9E-43 6.2E-48 362.9 25.1 220 149-384 2-226 (255)
155 TIGR02769 nickel_nikE nickel i 100.0 4.8E-43 1E-47 363.4 26.7 226 149-384 2-239 (265)
156 COG4152 ABC-type uncharacteriz 100.0 6.8E-44 1.5E-48 352.0 19.2 221 149-388 2-222 (300)
157 PRK14256 phosphate ABC transpo 100.0 8.7E-43 1.9E-47 358.6 28.2 223 149-384 4-235 (252)
158 PRK13639 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 362.4 29.6 216 150-384 2-225 (275)
159 TIGR03410 urea_trans_UrtE urea 100.0 3.3E-43 7.2E-48 356.6 24.5 212 150-383 1-219 (230)
160 PRK13632 cbiO cobalt transport 100.0 5.9E-43 1.3E-47 363.9 27.0 219 148-384 6-230 (271)
161 PRK14235 phosphate transporter 100.0 7.6E-43 1.6E-47 362.4 27.7 223 149-384 19-250 (267)
162 cd03235 ABC_Metallic_Cations A 100.0 1.6E-43 3.4E-48 354.9 21.5 210 151-378 1-213 (213)
163 PRK13640 cbiO cobalt transport 100.0 1.1E-42 2.4E-47 363.9 28.7 220 149-385 5-232 (282)
164 PTZ00265 multidrug resistance 100.0 9.1E-45 2E-49 447.9 15.1 347 10-372 224-655 (1466)
165 PRK13633 cobalt transporter AT 100.0 1E-42 2.2E-47 363.9 28.1 223 148-385 3-233 (280)
166 PRK14274 phosphate ABC transpo 100.0 1E-42 2.2E-47 359.6 27.7 222 149-384 12-242 (259)
167 PRK10575 iron-hydroxamate tran 100.0 5.2E-43 1.1E-47 363.1 25.6 220 149-384 11-236 (265)
168 PRK14241 phosphate transporter 100.0 1E-42 2.2E-47 359.5 27.6 223 149-384 4-241 (258)
169 PRK14237 phosphate transporter 100.0 1.3E-42 2.9E-47 360.5 28.5 224 147-384 18-250 (267)
170 TIGR03740 galliderm_ABC gallid 100.0 6.9E-43 1.5E-47 352.8 25.6 210 150-382 1-210 (223)
171 cd03225 ABC_cobalt_CbiO_domain 100.0 4.2E-43 9.2E-48 351.1 23.7 206 151-373 1-211 (211)
172 PRK10253 iron-enterobactin tra 100.0 5.6E-43 1.2E-47 362.9 25.4 220 149-384 7-232 (265)
173 TIGR00968 3a0106s01 sulfate AB 100.0 8.9E-43 1.9E-47 355.5 26.4 216 150-384 1-219 (237)
174 TIGR03873 F420-0_ABC_ATP propo 100.0 6.5E-43 1.4E-47 360.5 25.6 219 150-384 2-225 (256)
175 PRK14239 phosphate transporter 100.0 1.3E-42 2.8E-47 357.1 27.6 222 149-384 5-235 (252)
176 COG4987 CydC ABC-type transpor 100.0 4.4E-44 9.6E-49 386.5 17.2 215 149-385 336-561 (573)
177 COG0444 DppD ABC-type dipeptid 100.0 5.6E-43 1.2E-47 361.3 24.5 226 150-384 2-242 (316)
178 TIGR02857 CydD thiol reductant 100.0 7.4E-45 1.6E-49 411.7 11.6 333 11-369 172-529 (529)
179 PLN03130 ABC transporter C fam 100.0 1.8E-44 3.8E-49 449.1 16.0 217 148-385 1236-1461(1622)
180 PRK14250 phosphate ABC transpo 100.0 8.3E-43 1.8E-47 356.7 25.3 212 149-384 3-220 (241)
181 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-42 3.2E-47 352.8 26.8 216 150-384 1-219 (232)
182 PRK14240 phosphate transporter 100.0 1.9E-42 4E-47 355.6 27.8 222 149-384 3-233 (250)
183 PRK10584 putative ABC transpor 100.0 1.5E-42 3.3E-47 351.3 26.4 213 149-377 6-227 (228)
184 PRK13645 cbiO cobalt transport 100.0 1.6E-42 3.6E-47 363.8 27.2 221 149-384 6-239 (289)
185 PRK14270 phosphate ABC transpo 100.0 2.4E-42 5.3E-47 355.1 27.7 223 148-384 3-234 (251)
186 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-42 2.6E-47 348.1 24.7 208 150-378 1-211 (211)
187 PRK14257 phosphate ABC transpo 100.0 2.6E-42 5.7E-47 368.1 28.9 224 148-384 79-312 (329)
188 PRK13642 cbiO cobalt transport 100.0 2.8E-42 6.1E-47 360.0 28.4 219 149-384 4-228 (277)
189 PRK14244 phosphate ABC transpo 100.0 2E-42 4.4E-47 355.7 26.7 223 149-384 5-236 (251)
190 PRK14272 phosphate ABC transpo 100.0 2.8E-42 6.2E-47 354.5 27.8 223 149-384 4-235 (252)
191 COG4175 ProV ABC-type proline/ 100.0 3.4E-43 7.4E-48 358.0 20.4 226 148-384 3-253 (386)
192 PRK14262 phosphate ABC transpo 100.0 2.9E-42 6.4E-47 354.1 27.5 222 149-384 3-233 (250)
193 PRK10771 thiQ thiamine transpo 100.0 2.4E-42 5.3E-47 351.0 26.4 214 150-384 2-218 (232)
194 PLN03232 ABC transporter C fam 100.0 4.3E-44 9.4E-49 445.0 16.3 217 148-385 1233-1458(1495)
195 PRK14259 phosphate ABC transpo 100.0 2.7E-42 5.8E-47 358.7 27.1 222 148-385 12-253 (269)
196 cd03299 ABC_ModC_like Archeal 100.0 3.5E-42 7.6E-47 350.7 27.0 215 150-384 1-218 (235)
197 PRK11144 modC molybdate transp 100.0 2.4E-42 5.3E-47 372.0 27.0 207 150-384 2-217 (352)
198 PRK13549 xylose transporter AT 100.0 1.4E-42 2.9E-47 391.3 26.1 220 149-383 5-230 (506)
199 PRK15112 antimicrobial peptide 100.0 3.4E-42 7.3E-47 357.5 27.0 226 149-384 4-238 (267)
200 PRK14236 phosphate transporter 100.0 5.6E-42 1.2E-46 356.8 28.4 222 149-384 25-255 (272)
201 TIGR02142 modC_ABC molybdenum 100.0 2.9E-42 6.3E-47 371.7 27.0 209 154-385 4-221 (354)
202 TIGR03415 ABC_choXWV_ATP choli 100.0 3E-42 6.5E-47 372.8 27.2 206 168-384 35-253 (382)
203 PRK14251 phosphate ABC transpo 100.0 5.4E-42 1.2E-46 352.4 27.4 222 149-384 4-234 (251)
204 PRK14261 phosphate ABC transpo 100.0 5.5E-42 1.2E-46 352.8 27.5 223 148-384 5-236 (253)
205 TIGR01277 thiQ thiamine ABC tr 100.0 4.2E-42 9.1E-47 344.9 25.9 209 150-379 1-212 (213)
206 PRK14253 phosphate ABC transpo 100.0 4.8E-42 1E-46 352.4 26.8 222 149-384 3-232 (249)
207 PRK14248 phosphate ABC transpo 100.0 6.4E-42 1.4E-46 355.4 28.0 222 149-384 21-251 (268)
208 cd03233 ABC_PDR_domain1 The pl 100.0 3.2E-42 7E-47 343.3 24.7 195 149-378 3-202 (202)
209 cd03232 ABC_PDR_domain2 The pl 100.0 3.1E-42 6.6E-47 340.8 24.2 189 149-378 3-192 (192)
210 PRK14249 phosphate ABC transpo 100.0 7.2E-42 1.6E-46 351.6 27.6 221 149-384 4-234 (251)
211 PRK13547 hmuV hemin importer A 100.0 3.5E-42 7.6E-47 358.3 25.1 220 150-384 2-243 (272)
212 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-43 3.1E-48 440.9 17.5 217 148-385 1283-1508(1522)
213 cd03252 ABCC_Hemolysin The ABC 100.0 1.4E-42 2.9E-47 353.7 21.5 214 150-385 1-225 (237)
214 PRK11701 phnK phosphonate C-P 100.0 1.1E-41 2.4E-46 351.7 27.7 218 149-384 6-240 (258)
215 COG5265 ATM1 ABC-type transpor 100.0 5.6E-44 1.2E-48 375.1 10.4 347 19-386 119-487 (497)
216 PRK14238 phosphate transporter 100.0 1.2E-41 2.6E-46 354.1 27.8 222 149-384 24-254 (271)
217 PRK14271 phosphate ABC transpo 100.0 1.4E-41 3E-46 354.7 28.2 222 148-384 20-250 (276)
218 PRK10762 D-ribose transporter 100.0 3.9E-42 8.6E-47 387.0 26.0 219 149-383 4-228 (501)
219 PRK14260 phosphate ABC transpo 100.0 1.1E-41 2.5E-46 351.9 27.0 222 149-384 7-242 (259)
220 PRK09700 D-allose transporter 100.0 4.5E-42 9.8E-47 387.4 25.9 219 149-383 5-232 (510)
221 PRK14275 phosphate ABC transpo 100.0 1.2E-41 2.7E-46 356.7 27.4 223 148-384 38-269 (286)
222 PRK14255 phosphate ABC transpo 100.0 2E-41 4.2E-46 348.4 28.4 222 149-384 5-235 (252)
223 PRK14258 phosphate ABC transpo 100.0 2.1E-41 4.7E-46 350.3 28.1 222 149-384 7-244 (261)
224 CHL00131 ycf16 sulfate ABC tra 100.0 2.4E-41 5.3E-46 347.6 28.2 222 149-383 7-239 (252)
225 cd03267 ABC_NatA_like Similar 100.0 7.8E-42 1.7E-46 348.5 24.3 200 168-378 32-236 (236)
226 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-41 2.5E-46 341.8 25.1 203 151-378 3-214 (214)
227 PTZ00243 ABC transporter; Prov 100.0 2.1E-43 4.6E-48 438.8 14.8 215 148-385 1307-1533(1560)
228 PRK14266 phosphate ABC transpo 100.0 2E-41 4.4E-46 347.9 26.8 222 149-384 3-233 (250)
229 COG4559 ABC-type hemin transpo 100.0 3.7E-42 8E-47 333.6 19.9 216 149-384 1-229 (259)
230 PRK10418 nikD nickel transport 100.0 2.6E-41 5.7E-46 348.2 27.5 219 148-384 3-229 (254)
231 PRK14254 phosphate ABC transpo 100.0 4.3E-41 9.4E-46 352.4 29.5 221 148-384 38-268 (285)
232 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-41 3.3E-46 383.0 27.8 214 148-384 10-228 (510)
233 cd03213 ABCG_EPDR ABCG transpo 100.0 1.8E-41 4E-46 335.8 24.9 191 149-378 3-194 (194)
234 PRK14265 phosphate ABC transpo 100.0 3.4E-41 7.4E-46 351.3 28.2 221 148-384 19-257 (274)
235 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-41 2.4E-46 339.5 23.3 198 152-369 1-206 (206)
236 PRK14263 phosphate ABC transpo 100.0 3.3E-41 7.2E-46 349.0 27.7 222 147-384 6-244 (261)
237 PRK10419 nikE nickel transport 100.0 1.9E-41 4.1E-46 352.1 25.9 226 149-384 3-240 (268)
238 TIGR02982 heterocyst_DevA ABC 100.0 2E-41 4.3E-46 341.6 25.2 210 150-374 2-219 (220)
239 cd03251 ABCC_MsbA MsbA is an e 100.0 6.3E-42 1.4E-46 348.0 21.5 215 150-386 1-226 (234)
240 COG1123 ATPase components of v 100.0 1.8E-41 4E-46 372.8 26.4 228 149-386 5-245 (539)
241 COG1123 ATPase components of v 100.0 1.3E-41 2.8E-46 374.1 25.0 228 148-384 279-518 (539)
242 PRK14243 phosphate transporter 100.0 2.7E-41 5.8E-46 350.2 25.8 220 149-384 10-247 (264)
243 TIGR01184 ntrCD nitrate transp 100.0 1.3E-41 2.7E-46 345.7 22.7 201 173-383 1-202 (230)
244 PRK09580 sufC cysteine desulfu 100.0 5.6E-41 1.2E-45 343.9 27.4 228 150-391 2-240 (248)
245 TIGR02323 CP_lyasePhnK phospho 100.0 5.5E-41 1.2E-45 345.3 27.0 218 149-384 3-237 (253)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.5E-42 1.8E-46 348.0 20.7 218 150-386 1-227 (238)
247 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-41 3.7E-46 353.3 23.2 213 149-385 2-225 (275)
248 PRK10247 putative ABC transpor 100.0 2.1E-41 4.4E-46 342.9 22.9 211 148-381 6-223 (225)
249 COG4598 HisP ABC-type histidin 100.0 2.2E-42 4.7E-47 326.9 14.6 218 149-384 6-240 (256)
250 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-41 2.9E-46 344.4 21.2 214 149-385 2-226 (229)
251 PRK14264 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 353.1 28.2 225 148-384 44-288 (305)
252 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-41 9.8E-46 378.4 27.3 219 150-382 2-227 (500)
253 PRK11288 araG L-arabinose tran 100.0 5.1E-41 1.1E-45 378.1 27.0 216 149-380 4-224 (501)
254 PRK15056 manganese/iron transp 100.0 6.3E-41 1.4E-45 348.9 25.1 220 149-384 6-229 (272)
255 PRK10261 glutathione transport 100.0 7.2E-41 1.6E-45 385.5 28.1 227 148-384 312-552 (623)
256 TIGR02770 nickel_nikD nickel i 100.0 6.2E-41 1.3E-45 340.4 24.4 206 172-384 1-214 (230)
257 PRK14246 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 344.4 26.5 221 149-384 10-240 (257)
258 PRK14252 phosphate ABC transpo 100.0 2.3E-40 4.9E-45 343.3 28.8 222 148-384 15-248 (265)
259 cd03245 ABCC_bacteriocin_expor 100.0 3.1E-41 6.7E-46 339.8 21.7 209 149-378 2-220 (220)
260 PRK10982 galactose/methyl gala 100.0 5.6E-41 1.2E-45 376.8 25.7 216 152-383 1-221 (491)
261 TIGR03269 met_CoM_red_A2 methy 100.0 8.9E-41 1.9E-45 377.7 27.4 221 150-387 1-260 (520)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.2E-41 1.6E-45 333.1 23.2 190 150-388 1-196 (200)
263 COG4525 TauB ABC-type taurine 100.0 5.4E-41 1.2E-45 321.4 21.0 216 149-382 3-221 (259)
264 cd03253 ABCC_ATM1_transporter 100.0 5.7E-41 1.2E-45 341.4 21.6 215 150-385 1-224 (236)
265 PRK15134 microcin C ABC transp 100.0 9.5E-41 2.1E-45 378.2 25.4 227 148-384 274-514 (529)
266 PRK13538 cytochrome c biogenes 100.0 1.6E-40 3.4E-45 331.4 23.9 198 150-369 2-202 (204)
267 PRK03695 vitamin B12-transport 100.0 1.3E-40 2.7E-45 342.1 23.8 200 172-384 11-221 (248)
268 PRK10261 glutathione transport 100.0 1.2E-40 2.7E-45 383.6 26.3 225 149-384 12-257 (623)
269 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-40 2.9E-45 323.6 22.3 170 150-374 1-173 (173)
270 PRK15134 microcin C ABC transp 100.0 3.2E-40 6.9E-45 373.9 27.9 224 149-384 5-245 (529)
271 TIGR01271 CFTR_protein cystic 100.0 8.2E-42 1.8E-46 424.1 15.8 214 148-385 1216-1440(1490)
272 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-40 4.9E-45 329.6 23.1 195 150-369 1-198 (201)
273 PRK13543 cytochrome c biogenes 100.0 3.3E-40 7.2E-45 331.6 24.3 202 148-371 10-212 (214)
274 TIGR01257 rim_protein retinal- 100.0 3E-40 6.6E-45 409.1 29.0 224 148-388 1936-2162(2272)
275 COG4181 Predicted ABC-type tra 100.0 6.5E-41 1.4E-45 314.8 17.2 212 149-376 6-226 (228)
276 PRK13549 xylose transporter AT 100.0 2E-40 4.3E-45 373.7 24.6 223 149-383 259-492 (506)
277 TIGR03269 met_CoM_red_A2 methy 100.0 3.9E-40 8.5E-45 372.5 27.0 223 148-385 278-517 (520)
278 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-40 4E-45 334.4 21.7 208 149-379 2-220 (221)
279 PRK09544 znuC high-affinity zi 100.0 3.9E-40 8.4E-45 339.2 23.6 202 149-384 4-208 (251)
280 cd03229 ABC_Class3 This class 100.0 3.3E-40 7.2E-45 322.3 21.0 171 150-373 1-178 (178)
281 TIGR01189 ccmA heme ABC export 100.0 6.8E-40 1.5E-44 325.2 23.0 194 150-368 1-197 (198)
282 TIGR01257 rim_protein retinal- 100.0 1.1E-39 2.4E-44 404.1 30.0 223 148-388 927-1152(2272)
283 PRK13540 cytochrome c biogenes 100.0 6.6E-40 1.4E-44 326.0 22.5 193 150-367 2-197 (200)
284 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.1E-40 1.3E-44 332.1 22.5 202 150-378 23-224 (224)
285 COG1129 MglA ABC-type sugar tr 100.0 8.5E-40 1.9E-44 357.5 25.3 216 148-379 7-228 (500)
286 cd03248 ABCC_TAP TAP, the Tran 100.0 1.8E-40 4E-45 335.6 18.5 211 148-374 10-226 (226)
287 cd03288 ABCC_SUR2 The SUR doma 100.0 5.4E-40 1.2E-44 339.1 22.3 217 148-385 18-243 (257)
288 PRK13546 teichoic acids export 100.0 5E-39 1.1E-43 333.2 29.4 218 148-385 3-232 (264)
289 cd03247 ABCC_cytochrome_bd The 100.0 5.4E-40 1.2E-44 320.7 20.8 175 150-378 1-178 (178)
290 cd03246 ABCC_Protease_Secretio 100.0 5.6E-40 1.2E-44 319.3 20.5 169 150-374 1-173 (173)
291 COG4604 CeuD ABC-type enteroch 100.0 3.9E-41 8.3E-46 323.0 11.5 220 149-385 1-225 (252)
292 COG4172 ABC-type uncharacteriz 100.0 1.7E-39 3.6E-44 339.3 24.6 230 146-384 273-515 (534)
293 COG4161 ArtP ABC-type arginine 100.0 4E-40 8.6E-45 306.7 17.7 216 149-382 2-227 (242)
294 PRK09700 D-allose transporter 100.0 8.4E-40 1.8E-44 369.0 24.1 215 148-380 264-493 (510)
295 TIGR01194 cyc_pep_trnsptr cycl 100.0 6.4E-41 1.4E-45 381.6 15.1 210 148-377 336-551 (555)
296 TIGR02324 CP_lyasePhnL phospho 100.0 2E-39 4.4E-44 327.6 24.3 208 150-370 2-223 (224)
297 cd03215 ABC_Carb_Monos_II This 100.0 9.5E-40 2.1E-44 320.2 21.2 171 149-374 4-182 (182)
298 PRK10938 putative molybdenum t 100.0 6.6E-40 1.4E-44 368.0 22.9 209 149-384 3-223 (490)
299 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.5E-39 3.3E-44 324.7 23.0 198 149-380 6-207 (207)
300 PRK13539 cytochrome c biogenes 100.0 2.1E-39 4.6E-44 324.1 23.6 198 149-371 2-200 (207)
301 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-39 2.7E-44 366.7 24.1 221 149-381 257-488 (500)
302 TIGR01166 cbiO cobalt transpor 100.0 4.1E-39 8.8E-44 317.5 21.7 177 169-356 4-188 (190)
303 PRK13545 tagH teichoic acids e 100.0 1.4E-38 3.1E-43 351.3 27.9 214 149-387 21-234 (549)
304 PRK10762 D-ribose transporter 100.0 6.5E-39 1.4E-43 360.9 24.3 214 149-383 257-482 (501)
305 TIGR03771 anch_rpt_ABC anchore 100.0 6.7E-39 1.5E-43 324.2 21.7 197 178-384 1-200 (223)
306 PRK10522 multidrug transporter 100.0 5.6E-39 1.2E-43 365.1 23.6 202 149-377 322-530 (547)
307 cd03214 ABC_Iron-Siderophores_ 100.0 3.3E-39 7.1E-44 315.9 18.6 175 151-378 1-180 (180)
308 PRK11288 araG L-arabinose tran 100.0 5E-39 1.1E-43 361.9 22.8 215 149-383 257-483 (501)
309 PLN03232 ABC transporter C fam 100.0 2.3E-40 5.1E-45 411.7 12.0 335 13-385 470-828 (1495)
310 COG0396 sufC Cysteine desulfur 100.0 4.2E-38 9.2E-43 309.6 25.1 231 149-394 3-242 (251)
311 cd03250 ABCC_MRP_domain1 Domai 100.0 8.6E-39 1.9E-43 318.6 20.2 194 150-373 1-204 (204)
312 COG4148 ModC ABC-type molybdat 100.0 1.3E-39 2.8E-44 326.9 14.3 195 174-385 15-218 (352)
313 cd03228 ABCC_MRP_Like The MRP 100.0 1.7E-38 3.7E-43 308.2 19.9 167 150-373 1-171 (171)
314 cd03290 ABCC_SUR1_N The SUR do 100.0 3E-38 6.5E-43 317.9 22.0 200 151-373 2-218 (218)
315 PRK15439 autoinducer 2 ABC tra 100.0 2.5E-38 5.4E-43 356.9 23.9 214 149-383 268-490 (510)
316 COG4619 ABC-type uncharacteriz 100.0 6.2E-40 1.3E-44 307.4 9.0 204 150-374 4-212 (223)
317 TIGR01187 potA spermidine/putr 100.0 3.6E-38 7.7E-43 336.2 23.5 187 188-385 1-190 (325)
318 cd03216 ABC_Carb_Monos_I This 100.0 4.8E-38 1E-42 303.0 22.1 157 150-376 1-162 (163)
319 PRK13541 cytochrome c biogenes 100.0 4.5E-38 9.7E-43 311.6 22.5 191 150-366 2-192 (195)
320 COG3845 ABC-type uncharacteriz 100.0 3.9E-38 8.4E-43 338.3 23.4 215 149-379 4-223 (501)
321 PLN03130 ABC transporter C fam 100.0 1.1E-39 2.4E-44 406.3 13.1 206 149-385 614-828 (1622)
322 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.2E-37 2.5E-42 325.7 25.9 204 146-385 36-247 (282)
323 PRK10535 macrolide transporter 100.0 1.1E-37 2.3E-42 360.6 27.9 220 149-384 4-231 (648)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 8.6E-38 1.9E-42 302.1 20.9 163 150-372 1-163 (166)
325 PRK15064 ABC transporter ATP-b 100.0 1.8E-37 3.8E-42 351.6 26.4 211 150-385 2-242 (530)
326 PRK11819 putative ABC transpor 100.0 1.4E-37 3E-42 354.2 25.2 210 148-383 5-248 (556)
327 TIGR00954 3a01203 Peroxysomal 100.0 4.4E-39 9.6E-44 372.5 11.5 338 8-371 264-653 (659)
328 PRK10982 galactose/methyl gala 100.0 1.7E-37 3.7E-42 348.6 23.0 215 148-380 249-475 (491)
329 COG1119 ModF ABC-type molybden 100.0 8.6E-38 1.9E-42 310.7 18.0 216 148-379 30-256 (257)
330 PRK10938 putative molybdenum t 100.0 1.7E-37 3.7E-42 348.6 22.2 215 148-378 259-485 (490)
331 PRK15064 ABC transporter ATP-b 100.0 4.8E-37 1E-41 348.1 24.0 204 148-385 318-525 (530)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.4E-37 1.4E-41 348.6 24.5 211 149-385 4-248 (552)
333 PRK15177 Vi polysaccharide exp 100.0 4.8E-37 1E-41 308.7 20.7 195 171-389 1-196 (213)
334 COG4608 AppF ABC-type oligopep 100.0 5.3E-37 1.2E-41 310.9 20.5 194 149-385 4-199 (268)
335 COG4172 ABC-type uncharacteriz 100.0 6.7E-37 1.5E-41 319.9 21.8 227 149-384 6-246 (534)
336 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.5E-36 3.2E-41 311.6 22.7 190 171-383 8-205 (246)
337 KOG0054 Multidrug resistance-a 100.0 1.5E-37 3.3E-42 371.0 15.2 336 26-385 1001-1362(1381)
338 PRK11819 putative ABC transpor 100.0 6.3E-36 1.4E-40 340.7 25.2 205 148-383 323-531 (556)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-35 3.2E-40 337.4 26.4 204 148-382 321-528 (552)
340 COG4586 ABC-type uncharacteriz 100.0 2.4E-36 5.2E-41 302.9 15.8 208 170-388 37-249 (325)
341 COG4674 Uncharacterized ABC-ty 100.0 3.1E-36 6.6E-41 288.9 15.9 220 148-384 4-234 (249)
342 PRK13409 putative ATPase RIL; 100.0 1.9E-35 4.2E-40 337.2 24.3 197 148-379 339-536 (590)
343 cd03236 ABC_RNaseL_inhibitor_d 100.0 7.8E-36 1.7E-40 307.8 18.9 199 154-378 5-220 (255)
344 PRK10636 putative ABC transpor 100.0 2.8E-35 6E-40 339.8 24.6 203 148-385 311-517 (638)
345 TIGR00957 MRP_assoc_pro multi 100.0 2.6E-35 5.6E-40 367.2 23.2 209 149-385 636-850 (1522)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.4E-35 1.4E-39 275.7 19.5 144 150-373 1-144 (144)
347 PRK11147 ABC transporter ATPas 100.0 8.9E-35 1.9E-39 335.9 24.0 205 148-383 318-526 (635)
348 COG1134 TagH ABC-type polysacc 100.0 2.8E-34 6.2E-39 286.0 23.9 222 149-390 3-241 (249)
349 COG1101 PhnK ABC-type uncharac 100.0 5.3E-35 1.1E-39 284.4 17.3 203 168-378 17-231 (263)
350 PRK10636 putative ABC transpor 100.0 1.8E-34 3.9E-39 333.1 23.7 207 150-383 2-234 (638)
351 PLN03073 ABC transporter F fam 100.0 3.8E-34 8.2E-39 332.4 26.3 207 148-386 507-715 (718)
352 cd03238 ABC_UvrA The excision 100.0 1.9E-34 4.1E-39 281.1 19.5 157 169-374 7-166 (176)
353 cd03222 ABC_RNaseL_inhibitor T 100.0 2.4E-34 5.3E-39 280.6 19.0 152 153-380 4-158 (177)
354 COG4136 ABC-type uncharacteriz 100.0 1.1E-34 2.3E-39 267.5 15.3 191 149-356 2-196 (213)
355 TIGR01271 CFTR_protein cystic 100.0 5.3E-34 1.2E-38 354.5 25.2 197 170-385 439-636 (1490)
356 KOG0059 Lipid exporter ABCA1 a 100.0 2.1E-34 4.6E-39 342.4 20.2 224 148-389 563-791 (885)
357 PRK11147 ABC transporter ATPas 100.0 9.2E-34 2E-38 327.4 24.4 206 149-383 3-241 (635)
358 COG4167 SapF ABC-type antimicr 100.0 7.7E-34 1.7E-38 269.6 17.4 226 149-384 4-238 (267)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.1E-33 4.6E-38 268.4 20.2 152 152-373 2-157 (157)
360 KOG0054 Multidrug resistance-a 100.0 5.6E-33 1.2E-37 332.1 23.4 211 148-385 517-731 (1381)
361 PRK13409 putative ATPase RIL; 100.0 4.9E-33 1.1E-37 317.5 19.3 189 154-372 78-287 (590)
362 PTZ00243 ABC transporter; Prov 100.0 1.1E-32 2.5E-37 343.2 21.7 199 169-385 672-870 (1560)
363 COG4107 PhnK ABC-type phosphon 100.0 1.6E-32 3.6E-37 258.7 14.6 214 149-384 6-240 (258)
364 COG0488 Uup ATPase components 100.0 4.2E-32 9E-37 303.6 20.5 208 149-383 3-238 (530)
365 PLN03073 ABC transporter F fam 100.0 1.8E-32 3.9E-37 318.4 17.4 219 147-383 175-429 (718)
366 COG4133 CcmA ABC-type transpor 100.0 4.1E-32 8.8E-37 259.8 14.6 187 150-357 3-192 (209)
367 cd03270 ABC_UvrA_I The excisio 100.0 1.9E-30 4.2E-35 263.1 20.2 191 168-378 6-226 (226)
368 PF00005 ABC_tran: ABC transpo 100.0 8.7E-31 1.9E-35 243.8 13.3 133 173-324 1-137 (137)
369 COG4778 PhnL ABC-type phosphon 100.0 1.4E-30 3.1E-35 244.9 14.0 212 149-371 4-227 (235)
370 cd03271 ABC_UvrA_II The excisi 100.0 6.6E-30 1.4E-34 263.6 19.5 195 170-380 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.6E-28 3.5E-33 269.1 22.1 213 147-379 261-484 (500)
372 COG0488 Uup ATPase components 100.0 1.4E-28 3.1E-33 275.3 21.2 205 147-385 319-525 (530)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 1E-28 2.3E-33 245.4 12.5 165 174-371 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 1.7E-29 3.7E-34 238.5 6.4 207 149-384 3-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.1E-27 8.9E-32 240.6 14.9 186 168-370 13-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 8.6E-29 1.9E-33 248.7 1.9 189 149-371 5-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.5E-27 9.7E-32 242.0 9.9 183 183-370 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.4E-26 7.4E-31 229.9 15.1 192 149-373 5-210 (213)
379 PRK00635 excinuclease ABC subu 99.9 1.9E-25 4.2E-30 274.0 23.7 138 240-385 759-906 (1809)
380 COG4615 PvdE ABC-type sideroph 99.9 1.3E-26 2.7E-31 242.2 9.5 204 149-378 322-530 (546)
381 COG3845 ABC-type uncharacteriz 99.9 6.7E-25 1.4E-29 236.5 22.4 222 147-382 255-489 (501)
382 cd03240 ABC_Rad50 The catalyti 99.9 5.9E-26 1.3E-30 226.9 12.7 165 175-371 15-197 (204)
383 COG4178 ABC-type uncharacteriz 99.9 3E-25 6.4E-30 247.8 16.9 196 148-370 391-587 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 1.9E-24 4.2E-29 255.5 23.9 126 244-385 792-927 (943)
385 COG4170 SapD ABC-type antimicr 99.9 5.5E-25 1.2E-29 213.3 10.8 229 150-385 4-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 1.4E-23 3.1E-28 247.8 22.7 125 243-383 789-923 (924)
387 KOG0927 Predicted transporter 99.9 4E-24 8.6E-29 231.5 14.2 213 148-383 74-307 (614)
388 KOG0927 Predicted transporter 99.9 3.8E-24 8.3E-29 231.6 12.3 203 147-381 387-592 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.9E-23 1.7E-27 203.4 14.8 167 173-373 12-192 (198)
390 COG1245 Predicted ATPase, RNas 99.9 2E-22 4.4E-27 214.2 15.7 174 172-370 356-530 (591)
391 KOG0060 Long-chain acyl-CoA tr 99.9 3.9E-22 8.5E-27 217.5 17.8 204 148-371 432-641 (659)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 6.8E-23 1.5E-27 210.6 9.7 179 181-371 21-233 (247)
393 KOG0062 ATPase component of AB 99.9 3.9E-22 8.4E-27 215.1 10.2 201 148-382 79-282 (582)
394 KOG0066 eIF2-interacting prote 99.9 1.5E-21 3.2E-26 205.8 13.7 192 146-371 583-776 (807)
395 KOG2355 Predicted ABC-type tra 99.9 5.8E-21 1.2E-25 185.1 15.7 209 148-384 12-236 (291)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.6E-20 5.6E-25 187.4 16.0 81 292-373 123-211 (213)
397 KOG0062 ATPase component of AB 99.8 1.5E-20 3.3E-25 202.9 14.3 201 146-376 359-559 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.7E-20 3.8E-25 186.7 12.4 153 172-378 16-172 (200)
399 COG1245 Predicted ATPase, RNas 99.8 2.2E-20 4.7E-25 198.8 9.3 169 180-371 97-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 1.6E-19 3.6E-24 176.6 14.8 74 296-371 95-172 (178)
401 cd03283 ABC_MutS-like MutS-lik 99.8 1.2E-19 2.7E-24 180.6 9.7 136 169-356 13-149 (199)
402 PRK00635 excinuclease ABC subu 99.8 3.8E-18 8.2E-23 210.3 21.3 200 171-385 1504-1796(1809)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.6E-19 5.7E-24 181.2 9.1 153 169-379 16-175 (222)
404 COG0178 UvrA Excinuclease ATPa 99.8 6.5E-18 1.4E-22 190.6 20.9 128 243-385 783-919 (935)
405 KOG0064 Peroxisomal long-chain 99.8 4.8E-19 1E-23 191.1 11.1 185 149-357 481-671 (728)
406 cd03241 ABC_RecN RecN ATPase i 99.8 1.8E-18 4E-23 180.7 14.9 76 295-373 170-249 (276)
407 COG2401 ABC-type ATPase fused 99.8 1.4E-18 3E-23 183.2 12.5 185 169-375 395-588 (593)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 4.2E-18 9.1E-23 164.1 12.3 75 295-371 77-155 (162)
409 PRK00349 uvrA excinuclease ABC 99.7 9.5E-18 2.1E-22 199.0 15.8 135 243-385 436-585 (943)
410 TIGR00630 uvra excinuclease AB 99.7 3.8E-17 8.3E-22 193.5 15.8 134 243-384 434-582 (924)
411 cd03242 ABC_RecF RecF is a rec 99.7 1.5E-16 3.2E-21 165.8 16.9 77 293-374 181-269 (270)
412 KOG0066 eIF2-interacting prote 99.7 4.9E-18 1.1E-22 179.4 4.0 214 148-380 263-494 (807)
413 cd03243 ABC_MutS_homologs The 99.7 1.1E-16 2.3E-21 159.7 12.7 156 174-382 20-176 (202)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3E-16 6.6E-21 156.8 9.9 136 169-356 15-152 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.6 6.9E-16 1.5E-20 155.7 10.7 158 169-384 17-180 (216)
416 TIGR02858 spore_III_AA stage I 99.6 6.1E-15 1.3E-19 153.2 10.8 139 184-383 112-267 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.3E-14 2.9E-19 153.9 13.0 178 169-370 348-531 (592)
418 PRK00064 recF recombination pr 99.5 1.1E-12 2.3E-17 142.4 18.7 77 294-374 272-359 (361)
419 smart00534 MUTSac ATPase domai 99.5 2.5E-14 5.5E-19 140.8 4.3 77 294-375 60-140 (185)
420 cd00820 PEPCK_HprK Phosphoenol 99.4 1.1E-13 2.3E-18 123.7 6.4 72 170-252 2-77 (107)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 2.1E-12 4.6E-17 130.1 13.6 73 295-370 136-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.4 3.5E-13 7.6E-18 158.3 8.9 131 175-356 313-446 (771)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2.3E-12 4.9E-17 129.9 13.1 132 171-356 17-155 (213)
424 cd01128 rho_factor Transcripti 99.4 1.2E-12 2.6E-17 134.6 10.1 174 178-374 11-211 (249)
425 PTZ00132 GTP-binding nuclear p 99.3 1.3E-12 2.9E-17 131.1 7.6 44 300-343 157-205 (215)
426 KOG0063 RNAse L inhibitor, ABC 99.3 5.2E-12 1.1E-16 134.4 8.8 185 181-387 98-309 (592)
427 PRK07721 fliI flagellum-specif 99.3 2.4E-11 5.2E-16 134.1 14.4 174 169-382 145-340 (438)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2E-11 4.2E-16 123.7 11.9 134 170-356 18-155 (222)
429 TIGR00634 recN DNA repair prot 99.3 6.4E-12 1.4E-16 143.9 9.2 77 294-373 439-519 (563)
430 PHA02562 46 endonuclease subun 99.2 1.2E-11 2.5E-16 141.7 9.1 78 293-374 466-555 (562)
431 PRK10869 recombination and rep 99.2 1.8E-11 3.9E-16 139.5 10.1 77 294-373 429-509 (553)
432 TIGR00618 sbcc exonuclease Sbc 99.2 2E-11 4.4E-16 149.2 11.0 81 291-372 946-1036(1042)
433 PF01061 ABC2_membrane: ABC-2 99.2 1E-12 2.2E-17 129.4 -0.3 154 491-648 1-156 (210)
434 PRK00409 recombination and DNA 99.2 1.4E-11 3.1E-16 145.1 7.9 80 294-376 389-469 (782)
435 COG0178 UvrA Excinuclease ATPa 99.2 2.2E-10 4.7E-15 130.6 15.0 138 241-385 426-577 (935)
436 PRK08533 flagellar accessory p 99.2 2.9E-10 6.4E-15 115.9 13.2 150 179-370 20-184 (230)
437 cd01124 KaiC KaiC is a circadi 99.1 4E-10 8.7E-15 110.0 13.1 78 293-370 69-163 (187)
438 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1.3E-10 2.8E-15 117.4 9.4 135 169-356 16-154 (218)
439 PF13304 AAA_21: AAA domain; P 99.1 6.4E-11 1.4E-15 118.1 6.4 63 294-356 235-300 (303)
440 PRK13695 putative NTPase; Prov 99.1 8.5E-11 1.8E-15 114.4 5.2 79 294-378 77-157 (174)
441 PRK03918 chromosome segregatio 99.1 2.3E-10 5E-15 137.8 9.6 78 292-371 785-868 (880)
442 TIGR00606 rad50 rad50. This fa 99.1 3.3E-10 7.2E-15 141.4 9.7 110 241-363 1154-1277(1311)
443 TIGR02788 VirB11 P-type DNA tr 99.0 6E-10 1.3E-14 118.4 9.7 144 175-384 136-280 (308)
444 PRK10246 exonuclease subunit S 99.0 6.2E-10 1.3E-14 135.9 11.0 80 291-371 945-1032(1047)
445 PRK13830 conjugal transfer pro 99.0 5E-09 1.1E-13 124.9 17.9 78 311-392 650-736 (818)
446 cd01120 RecA-like_NTPases RecA 99.0 1.5E-09 3.3E-14 102.2 9.6 63 296-358 68-140 (165)
447 PRK06793 fliI flagellum-specif 99.0 2.1E-09 4.6E-14 118.1 11.6 169 150-380 131-306 (432)
448 COG3910 Predicted ATPase [Gene 99.0 7.8E-09 1.7E-13 100.1 13.9 82 289-373 123-205 (233)
449 PRK01156 chromosome segregatio 99.0 1.9E-09 4E-14 130.3 10.6 77 292-370 798-883 (895)
450 cd01131 PilT Pilus retraction 98.9 5.7E-09 1.2E-13 104.0 10.6 57 305-370 66-122 (198)
451 TIGR02168 SMC_prok_B chromosom 98.9 2E-09 4.3E-14 132.9 7.4 76 292-370 1086-1165(1179)
452 PRK06067 flagellar accessory p 98.9 1.8E-08 3.9E-13 102.7 12.9 164 171-371 12-187 (234)
453 PRK06995 flhF flagellar biosyn 98.8 1.7E-08 3.8E-13 112.5 10.2 151 171-353 244-400 (484)
454 PRK02224 chromosome segregatio 98.8 1.3E-08 2.7E-13 123.0 9.3 78 293-372 779-869 (880)
455 TIGR02169 SMC_prok_A chromosom 98.8 9.7E-09 2.1E-13 127.0 8.3 76 293-371 1072-1151(1164)
456 TIGR03238 dnd_assoc_3 dnd syst 98.8 6.1E-09 1.3E-13 114.5 5.2 52 170-224 19-70 (504)
457 cd01125 repA Hexameric Replica 98.7 5.4E-08 1.2E-12 99.6 11.3 136 183-356 1-160 (239)
458 smart00382 AAA ATPases associa 98.7 4E-07 8.7E-12 82.3 15.0 118 182-353 1-124 (148)
459 TIGR01420 pilT_fam pilus retra 98.6 2.3E-07 4.9E-12 100.3 10.5 56 305-369 187-242 (343)
460 PRK13891 conjugal transfer pro 98.6 6.6E-07 1.4E-11 107.4 15.1 69 306-375 680-751 (852)
461 TIGR03881 KaiC_arch_4 KaiC dom 98.5 3.2E-08 6.9E-13 100.4 2.2 49 172-221 8-57 (229)
462 TIGR01026 fliI_yscN ATPase Fli 98.5 9.2E-07 2E-11 98.1 13.4 174 169-383 150-346 (440)
463 PRK07196 fliI flagellum-specif 98.5 1.2E-07 2.5E-12 104.6 6.0 86 169-256 142-239 (434)
464 TIGR00611 recf recF protein. A 98.5 1.7E-07 3.7E-12 102.0 7.2 59 295-356 275-342 (365)
465 PRK14079 recF recombination pr 98.5 2.3E-07 4.9E-12 100.5 7.5 75 295-377 263-346 (349)
466 cd01130 VirB11-like_ATPase Typ 98.5 3.5E-07 7.6E-12 90.2 8.1 84 172-257 14-100 (186)
467 TIGR02655 circ_KaiC circadian 98.5 9.7E-09 2.1E-13 115.8 -3.8 167 171-370 8-190 (484)
468 COG0419 SbcC ATPase involved i 98.4 7.8E-07 1.7E-11 107.8 10.6 79 291-371 811-897 (908)
469 PRK06002 fliI flagellum-specif 98.4 9.7E-07 2.1E-11 97.5 9.0 83 147-239 137-230 (450)
470 cd02023 UMPK Uridine monophosp 98.4 4.1E-07 8.9E-12 90.2 5.2 112 185-328 1-113 (198)
471 PRK05399 DNA mismatch repair p 98.3 1.2E-06 2.5E-11 105.1 8.7 137 170-365 595-738 (854)
472 PLN03210 Resistant to P. syrin 98.3 4E-06 8.7E-11 104.1 12.7 166 172-392 196-365 (1153)
473 PRK13898 type IV secretion sys 98.3 2.3E-05 5E-10 93.9 18.7 49 309-357 638-687 (800)
474 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.6E-11 109.7 7.4 60 293-355 1245-1316(1353)
475 PRK09825 idnK D-gluconate kina 98.2 7.1E-07 1.5E-11 87.4 3.7 66 182-253 2-70 (176)
476 cd01122 GP4d_helicase GP4d_hel 98.2 4.6E-05 1E-09 79.2 15.6 36 170-205 17-52 (271)
477 PRK13873 conjugal transfer ATP 98.2 6.3E-05 1.4E-09 90.3 18.6 46 311-356 633-679 (811)
478 TIGR00767 rho transcription te 98.1 5.7E-06 1.2E-10 90.0 7.4 52 149-207 130-192 (415)
479 PRK06315 type III secretion sy 98.1 7.7E-06 1.7E-10 90.6 8.4 109 170-281 152-277 (442)
480 PF09818 ABC_ATPase: Predicted 98.1 9E-05 2E-09 81.0 16.2 161 178-374 240-416 (448)
481 cd00009 AAA The AAA+ (ATPases 98.1 3.4E-05 7.4E-10 70.4 10.7 55 301-356 72-131 (151)
482 PRK01889 GTPase RsgA; Reviewed 98.0 5.7E-06 1.2E-10 89.9 5.5 78 172-252 184-262 (356)
483 PF13555 AAA_29: P-loop contai 98.0 7E-06 1.5E-10 66.2 4.5 36 173-208 12-48 (62)
484 PRK00454 engB GTP-binding prot 98.0 6E-05 1.3E-09 73.8 12.1 67 270-344 126-195 (196)
485 PRK09270 nucleoside triphospha 98.0 6.7E-06 1.5E-10 83.7 5.4 74 180-256 30-107 (229)
486 PRK03846 adenylylsulfate kinas 98.0 5.1E-06 1.1E-10 82.7 3.5 56 181-237 22-77 (198)
487 PF13558 SbcCD_C: Putative exo 98.0 1.8E-05 3.9E-10 68.9 6.4 48 293-340 30-90 (90)
488 TIGR00416 sms DNA repair prote 97.9 3E-05 6.6E-10 86.8 9.7 62 312-373 169-247 (454)
489 cd01876 YihA_EngB The YihA (En 97.9 1E-05 2.3E-10 76.0 5.2 64 270-341 101-169 (170)
490 TIGR00235 udk uridine kinase. 97.9 4.1E-06 8.9E-11 83.9 2.3 27 181-207 4-30 (207)
491 TIGR00554 panK_bact pantothena 97.9 8E-06 1.7E-10 86.0 4.5 74 183-257 62-138 (290)
492 PRK10078 ribose 1,5-bisphospho 97.9 1E-05 2.2E-10 79.6 5.0 37 183-224 2-38 (186)
493 TIGR00152 dephospho-CoA kinase 97.9 1.4E-05 2.9E-10 78.9 5.5 73 298-372 60-133 (188)
494 PRK10416 signal recognition pa 97.9 1.1E-05 2.4E-10 86.3 4.4 71 181-253 112-192 (318)
495 PRK08149 ATP synthase SpaL; Va 97.9 2.2E-05 4.9E-10 86.6 6.8 68 169-238 138-215 (428)
496 PRK13764 ATPase; Provisional 97.8 5.6E-05 1.2E-09 86.8 9.8 63 310-380 321-400 (602)
497 TIGR02903 spore_lon_C ATP-depe 97.8 4.7E-05 1E-09 88.4 9.0 111 183-340 175-291 (615)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.8 0.0001 2.2E-09 80.1 10.8 124 181-369 132-259 (358)
499 cd01121 Sms Sms (bacterial rad 97.8 9.3E-05 2E-09 80.8 10.3 30 178-207 77-106 (372)
500 PLN02318 phosphoribulokinase/u 97.7 2.5E-05 5.5E-10 88.5 4.9 63 184-252 66-128 (656)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7e-87 Score=767.65 Aligned_cols=481 Identities=49% Similarity=0.867 Sum_probs=399.3
Q ss_pred CeeEEEEeEEEEEeeccc---------------------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006330 147 PIYLKFTDVTYKVILKGM---------------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~---------------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G 205 (650)
+..++|.|++|+....+. ...+++++|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 567999999998753320 01135679999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc
Q 006330 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285 (650)
Q Consensus 206 ~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 285 (650)
+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++.|
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 76422248999999999876666789999999999999999999999887766555566677788999999999999999
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCE
Q 006330 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (650)
Q Consensus 286 t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ 365 (650)
|.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++++.||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999889999999999999999999999999999999999999999999999999988999999999998778899999
Q ss_pred EEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHH
Q 006330 366 LILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445 (650)
Q Consensus 366 iivL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (650)
|++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+........ .+ . ....
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~----------~~------~---~~~~ 337 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE----------RE------K---PNVK 337 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc----------cc------c---chHH
Confidence 999999999999999999999999999999999999999999875421100000 00 0 0011
Q ss_pred HHHHHHHHHHHHHHHHhhh--c-CCCCCcHHH---hhhc-CCCCCCCCCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 006330 446 EYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 518 (650)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 518 (650)
+.+.+.|++.......... . ......... .... ...++.+..+||+|+.+|++|+++++|++.+.++|+++++
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 338 QSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1222333221110000000 0 000000000 0000 0112235678999999999999999999988889999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 006330 519 ATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLN 598 (650)
Q Consensus 519 ~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~ 598 (650)
++|+++|++||+++ +.++++|.|++||+++++++.+++.++..|++||++|+||+.+|+|++++|++|++++|+|+.
T Consensus 418 ~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~ 494 (659)
T PLN03211 418 AAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494 (659)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999984 578999999999999998988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 599 LVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 599 ~~~~~~f~~i~Y~m~gl~~~~~~f~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
++.+++|++|+|||+||++++.+||+|++++++..++++++|++++++..+
T Consensus 495 ~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 495 LILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999988643
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-87 Score=767.73 Aligned_cols=471 Identities=44% Similarity=0.752 Sum_probs=405.1
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCC-
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~- 224 (650)
+..++|+|+++..+.+. ...+++|+|||++++|||++|||||||||||||||+|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999874321 14588999999999999999999999999999999999988653 57899999997765
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|...++++++++|+++++++||.+|+||++|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||.+|+.||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|.|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 006330 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (650)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (650)
+||++.|++||++.||+||++|+++.+ .. ..+.....+..... ..... .....+... ++ .+..
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~--------~~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLI---NKFSQ-TDNLKKTLE-AL--------EKSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHh---hhccc-cchhhhhHH-HH--------hhhc
Confidence 999999999999999999999998754 10 00000000000000 00000 000000000 00 0000
Q ss_pred cCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006330 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (650)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~ 543 (650)
... .........+||.|+++|++|.+++ +|++.+.+.|+++++++|+++|++||+++. ++++++++.
T Consensus 323 ~~~-----------~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STS-----------KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred ccc-----------cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 000 0000111689999999999999998 688889999999999999999999999964 678888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHH
Q 006330 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (650)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~~f~ 623 (650)
|++||++.++.|.++++++..|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|+++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 624 LSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 624 ~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
+|++++++..++++++|++++..+.+
T Consensus 471 ~~~l~~~~~~~~a~s~~~~i~~~~~~ 496 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESLGLFISAIVPN 496 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998865
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.5e-82 Score=723.52 Aligned_cols=476 Identities=34% Similarity=0.572 Sum_probs=395.1
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCC-h
Q 006330 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~-~ 225 (650)
.++|.++. +++...+ ++++++++|+|+|++++|||++||+|||||||||||++|+|+.... ..+|+|.+||.+++ .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 46677765 4432211 1234678999999999999999999999999999999999976422 24799999999986 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc-CCCCCHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGerqRv 304 (650)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.++.||.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999988877767777888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|++++.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999988899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHH-Hhh
Q 006330 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE-KKK 463 (650)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 463 (650)
+||+++|++||.+.||+||++++++.+..... + .....+.+.+.|++.....+ ...
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---E--------------------SRERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---c--------------------hHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999764321100 0 00001111222221100000 000
Q ss_pred hcCCCCCcHHH-hhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 006330 464 LMAPIPLDEEI-KAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (650)
Q Consensus 464 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~ 541 (650)
........... ..........+..+||.|+.+|++|+++. +|++.+.++|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00000000000 00000122346789999999999999986 788888899999999999999999999975 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHH
Q 006330 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (650)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~~ 621 (650)
+.|++||++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999999898888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 622 FFLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 622 f~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
||+|++++++..++++++|++++.+..+
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~ 499 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSS 499 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999987643
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.3e-79 Score=750.01 Aligned_cols=475 Identities=29% Similarity=0.494 Sum_probs=394.4
Q ss_pred CCeeEEEEeEEEEEeecccc-----ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC
Q 006330 146 LPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G 220 (650)
.+..+.|+||+|.++.+... ..+++.+|+|||++++||+++|||||||||||||||+|+|+......+|+|.+||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 34579999999998543210 1134579999999999999999999999999999999999864334689999999
Q ss_pred EeCCh-hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 221 HPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 221 ~~~~~-~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
++..+ ..++.+|||+|+|.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.++.|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 98753 45678999999999999999999999998877765566667778899999999999999999998777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-CeEEEec
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-G~iv~~G 378 (650)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |++++.|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999998778899999999996 8999999
Q ss_pred CH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHH
Q 006330 379 KA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY 452 (650)
Q Consensus 379 ~~----~~~~~~f~~~-g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 452 (650)
++ +++++||+++ |. +||++.|||||++++++.+... +. ..+..+.+..+ +.|
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~~d~~~~~~~s-----------~~~ 1161 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--GIDFAEHYKSS-----------SLY 1161 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--cchHHHHHhcc-----------HHH
Confidence 96 6899999998 66 4999999999999987532110 00 00000000000 011
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC
Q 006330 453 ETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 531 (650)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~ 531 (650)
++..... .....+.+. .........+..+||+|+.+|++|+++. +|++.+.+.|+++.+++|+++|++||++
T Consensus 1162 ~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~ 1234 (1470)
T PLN03140 1162 QRNKALV--KELSTPPPG-----ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV 1234 (1470)
T ss_pred HHHHHHH--HHhccCCCC-----ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1110000 011111110 0111223467899999999999999986 8999999999999999999999999999
Q ss_pred CCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006330 532 DSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 609 (650)
Q Consensus 532 ~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~ 609 (650)
+.+. ..+++++.|++|++++++++..+...++.|+.||++|+|||++|+|++++|++|++++|+|+.++.+++|++|+
T Consensus 1235 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~ 1314 (1470)
T PLN03140 1235 GTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIV 1314 (1470)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7532 36788999999999998888777777889999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 610 YFMAGLRMGAGPFFLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 610 Y~m~gl~~~~~~f~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
|||+||++++.+||+|+++++++.+++.++|++++++..+
T Consensus 1315 Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1315 YAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 9999999999999999999999999999999999987643
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.7e-78 Score=742.60 Aligned_cols=461 Identities=28% Similarity=0.447 Sum_probs=379.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCcceEEEECCEeCCh---hccCcEEEEccCCcCCCC
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~ 243 (650)
++++|+|||+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 3468999999998742 356679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CccHHHHHHH-HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 006330 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (650)
Q Consensus 244 lTV~enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 318 (650)
+||+|||.|++.++.|. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998876543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCC
Q 006330 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (650)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~g~~~~~~ 397 (650)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHH------HHHHHh-hhcCCCCC
Q 006330 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKK-KLMAPIPL 470 (650)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~ 470 (650)
.||+||++++++.+.+.+. .+.++..+ ... +.+.+.|+++. ...+.. +.......
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~~------------~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKVP------------RTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccCC------------CCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999875432211 00000000 001 11222222110 000000 00000000
Q ss_pred c-------HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 006330 471 D-------EEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (650)
Q Consensus 471 ~-------~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~ 542 (650)
. ...+.+.......+..|||+|+.+|++|++++ +||+.++++|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 0 00001112233467889999999999999986 788888999999999999999999999975 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHH
Q 006330 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (650)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~~f 622 (650)
.|++||++++.+|+++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888875 556777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 623 FLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 623 ~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
|+|+++++++.+++.++|.+++++..+
T Consensus 533 f~f~l~~~l~~~~~~~~~~~i~a~~~~ 559 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLFRSIGAVTKT 559 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987553
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-77 Score=735.22 Aligned_cols=468 Identities=31% Similarity=0.523 Sum_probs=386.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCChhc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~ 227 (650)
.++++||+|+|+.+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987677
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.+|||+|++.+++.+||+|||.|++.++.|...+++++.++++++++.+||.++.|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88999999999999999999999999988776656677778889999999999999999998543 38999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCC-eEEEecCH----H
Q 006330 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (650)
Q Consensus 308 ~aL~~~P~-iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G-~iv~~G~~----~ 381 (650)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+|++|++| ++++.|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999987777889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 006330 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (650)
Q Consensus 382 ~~~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (650)
++++||++.|+ +||++.|||||++|+++....... ..+ ..+.+..++. +++.....+
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~----~~~-------~~~~~~~s~~-----------~~~~~~~~~ 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA----NQD-------YHEVWRNSSE-----------YQAVKNELD 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch----hcc-------HHHHHhcCHH-----------HHHHHHHHH
Confidence 78999999996 999999999999999764211100 000 0000100000 000000000
Q ss_pred HhhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 006330 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (650)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~ 539 (650)
....+....+. .........+.++||+|+.+|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++
T Consensus 1052 --~~~~~~~~~~~--~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAED--DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 00000000000 0001122357899999999999999986 899999999999999999999999999975 68899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 006330 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (650)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~er~i~-~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~ 618 (650)
++|.|++|++++++.+. +...++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988776554 346677888888886 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 619 AGP-------FFLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 619 ~~~-------f~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
+.. |++|++++++..++++++|+++++++.+
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~ 1243 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPN 1243 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 866 9999999999999999999999988764
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-78 Score=703.59 Aligned_cols=463 Identities=31% Similarity=0.530 Sum_probs=393.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC-hhcc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~ 228 (650)
..|+|+.|..+.+ ++++++|+||++.++||.++||||+||||||||||+|+||...+..+|+|++||.|.+ +.++
T Consensus 788 ~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCcccccc----ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 4455555544332 3678899999999999999999999999999999999999876678999999999998 6788
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
|.+|||.|+|.|.+.+||||.|.|+|.+|+|..++.+++.+.|+++++.++|+++.|..||..+ .|||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-CeEEEecCHH----H
Q 006330 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----E 382 (650)
Q Consensus 309 aL~~~P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-G~iv~~G~~~----~ 382 (650)
+|+.|| .||+|||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|++ |+.||.|+.. .
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 899999999999999999999999999999999999999999999999999999986 7999999974 4
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 006330 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (650)
Q Consensus 383 ~~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 461 (650)
+++||+++| .+||...|||||++|+++..... . ...+..+.+..+ +.|++..+. -
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~-~----------~~~D~a~~w~~S-----------~e~k~~~e~--v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA-S----------LSVDFAEIWKNS-----------EEYKRNKEL--V 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc-c----------cCccHHHHHhcc-----------HHHHHHHHH--H
Confidence 677999997 79998889999999997642111 0 000111111111 111111110 1
Q ss_pred hhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH
Q 006330 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIK-EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (650)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~-~~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~ 540 (650)
+.+..+.+. .......+++|..|+|.|++.+++|++. .||+|.+.++|++..++.|+++|+.||+.+ .+..++|
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 112222211 1222345567899999999999999987 589999999999999999999999999998 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChH
Q 006330 541 DQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAG 620 (650)
Q Consensus 541 ~~~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~ 620 (650)
|.+|++|+.+++.+....-.....+..||.+++||+.+|+|++.+|++|.+++|+|+.++++++|.+|.||++|+.+++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999887755433223455677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006330 621 PFFLSMLTVFLSIVAAQVCPFITTDK 646 (650)
Q Consensus 621 ~f~~f~l~~~l~~~~~~~lG~~~~~~ 646 (650)
+|++|++.+++..+....+|+++.++
T Consensus 1234 ~~~~f~~~~~~f~lYf~~~Gmm~~s~ 1259 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFTTLGMMLVSL 1259 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-76 Score=726.32 Aligned_cols=463 Identities=26% Similarity=0.415 Sum_probs=375.2
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCh-hccCcEEEEccCCcCCCCCC
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (650)
.++.||+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+ ..++.++||+|+|.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999976421 238999999998854 23678999999999999999
Q ss_pred HHHHHHHHHhccCCC-------CccHHHH------------------------HHHHHHHHHHcCCCccccccccCccCC
Q 006330 246 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 294 (650)
Q Consensus 246 V~enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (650)
|+|||.|++.++.+. ..+++++ +..++++++.+||+++.||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998765321 1111111 123577899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999986 489999999999888999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 006330 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 453 (650)
Q Consensus 374 iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 453 (650)
++|+|+++++.+||+++|++||++.|||||++++++.+... .... . ...|......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~--------~~~~--~------~~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE--------QYWA--D------RNKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh--------hhhh--c------cCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998643211 0000 0 000000001122344444
Q ss_pred HHHHHH-HHhhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC
Q 006330 454 TRVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 531 (650)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~ 531 (650)
+..... ...+... +.+.....+.......|..++|.|+..|++|+++. +||+.+++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSV--PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhh--hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 321110 0001100 00100011111223458899999999999999986 7888888999999999999999999998
Q ss_pred CCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006330 532 DSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 609 (650)
Q Consensus 532 ~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~ 609 (650)
+.+. ..+.+.+.|++||++++++|.+ +..+..++.||+||+|||..++|++++|++|++++++|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6421 2345677899999888877655 577889999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006330 610 YFMAGLRMGAGPFFLSMLTVFLSIVAAQVCPFITTDKINH 649 (650)
Q Consensus 610 Y~m~gl~~~~~~f~~f~l~~~l~~~~~~~lG~~~~~~~~~ 649 (650)
|||+||++++++||+|+++++++.+++++++.+++++.++
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~ 676 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT 676 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999987654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-67 Score=608.94 Aligned_cols=461 Identities=32% Similarity=0.522 Sum_probs=379.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCChhc-cCcEEEEccCCcCCCCCCH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~-~~~i~yV~Q~~~l~~~lTV 246 (650)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|++|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976532 23579999999986533 5779999999999999999
Q ss_pred HHHHHHHHhccCCCC----ccHHHHHH-HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006330 247 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (650)
Q Consensus 247 ~enl~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE 321 (650)
+|+|.|+++++.+.. ..+.++.+ ..+.+++.+||++|+||++|+..++++||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33333332 5678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCCh
Q 006330 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (650)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 400 (650)
+|.|||+.++.++++.|+++++. +.|++++.|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999865 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHH-HHHhhhcCCCCCcHHHhhhcC
Q 006330 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE-NEKKKLMAPIPLDEEIKAKVS 479 (650)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 479 (650)
|||+.++++...... ...+. ..+.+....+.+.+.+.+.... ....+... +.+.....+..
T Consensus 367 ADfLt~vts~k~~~~-----------~~~~~-----~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQ-----------YWNKR-----SKPYPYTSVSEFAEYFLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCccccc-----------ccccc-----CCCcccCCHHHHHHHHhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 999999987211100 00000 0000011111122222211110 01111111 11111122334
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 006330 480 SPKRNWGASWIQQYTILFRRGIKEH-RHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (650)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (650)
.....|..+.|.|++.|+.|.|... ||..++..++++.+++|+|+|++||+.+-.+..+.+.|.|++||.+++.+|..
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 4566789999999999999999875 55556678899999999999999999973455678899999999999977766
Q ss_pred HHHHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 006330 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQV 638 (650)
Q Consensus 559 ~~~i~~~~~er~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~~f~~f~l~~~l~~~~~~~ 638 (650)
++.+....+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||.+++++||.++|+++++.+++.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 006330 639 CPFITTDKIN 648 (650)
Q Consensus 639 lG~~~~~~~~ 648 (650)
+--+++.+-+
T Consensus 588 lFr~ia~l~~ 597 (1391)
T KOG0065|consen 588 LFRFIASLSR 597 (1391)
T ss_pred HHHHHHHhcc
Confidence 9888887644
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-64 Score=557.60 Aligned_cols=358 Identities=25% Similarity=0.382 Sum_probs=300.7
Q ss_pred hHhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccc-eeechhc
Q 006330 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVS 86 (650)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (650)
-++.++.||+.|.++.+|+|.+++++|||+|++|..|.++|.++++...+++.+++.+++.+ +.++.+..+ ..+.-++
T Consensus 313 rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~ 391 (716)
T KOG0058|consen 313 RKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILF 391 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999 555555555 4556678
Q ss_pred hhhhHhhhhhhhhhhhhccccCCCCcccc----------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeE
Q 006330 87 SGAALSRASSASLGLSFSFTGFTMPPDEI----------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYL 150 (650)
Q Consensus 87 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (650)
+|+.++..|.++.|.+.+|..|....... +..+.|+..|..+.+.......|. .....|
T Consensus 392 ~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~-----~~~G~I 466 (716)
T KOG0058|consen 392 YGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPD-----HLQGVI 466 (716)
T ss_pred hccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccc-----cccceE
Confidence 99999999999999999999988765533 333455555544444332111110 234579
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----h
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (650)
+|+||+|.|+ .+++.+||+|+||+|+|||++|||||||+||||+.++|. |+|+|. +|+|++||+|+++ .
T Consensus 467 eF~~VsFaYP-----~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 467 EFEDVSFAYP-----TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHKY 539 (716)
T ss_pred EEEEeeeecC-----CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHHH
Confidence 9999999985 346789999999999999999999999999999999999 688764 8999999999863 5
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+|++||+|.|||.||.. ||+|||.|+......+++..+.+.+.+++++.. +++++||.||.++ ..||||||||++|
T Consensus 540 lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG-~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG-SQLSGGQKQRIAI 615 (716)
T ss_pred HHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc-ccccchHHHHHHH
Confidence 78999999999999975 999999998652111112233345567778865 4999999999765 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||++||.||||||.||+||++++..|.+.|.++.+ ++|||+|.|++++ .+.+|+|+|+++|++++.|+|+|+++
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999999999876 6999999999885 68899999999999999999999985
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=421.46 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++||+++| ++..+|+|||++|++||+++|+|||||||||||+||++ +. ++++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999998 57789999999999999999999999999999999997 33 356899999998763
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..+|+++|+|||+.+|||++||.||+.++...- ...++++.++++.++|+.+||.+..|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 247899999999999999999999999986432 246788889999999999999988875 578999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +.+.+|||++|++|++++.|+|+++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999764 6788999999999999999999887
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-55 Score=508.58 Aligned_cols=361 Identities=25% Similarity=0.344 Sum_probs=273.7
Q ss_pred hHhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhch
Q 006330 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (650)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (650)
++++++.++.-+++-++|||++++.+||.+|+++..|.++|++-+......+.+++...|...-....+-...--..+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999999999998888777666655544111112222233445677
Q ss_pred hhhHhhhhhhhhhhhhccccC----------------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006330 88 GAALSRASSASLGLSFSFTGF----------------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (650)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (650)
|+.++..+....|.++.-... ....+..++...+..-+-.+.++... .... ........|+
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~~~~--~~~~~~g~ie 352 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-KGGR--VLSSIKGEIE 352 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-ccCC--cccccccceE
Confidence 777777654444443332211 22222333333333333223332221 1011 1122345799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----hhc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~ 227 (650)
|+||+|+|+ .+++.+||+|+||.|++|+.+||||||||||||++++|. |+++|. +|+|++||.|+. +.+
T Consensus 353 f~nV~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 353 FRNVCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred EEEEEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHH
Confidence 999999984 345778999999999999999999999999999999999 578764 899999999986 467
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
|.+||.|+|+|.||. .||+|||.|+......+++.+..+.+.+++++.. |++++||.+|++.+. |||||||||+||
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIA 501 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHH
Confidence 999999999999996 5999999997422111112223333446666655 488999999987765 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|||++||+|||||||||+||++++..|.+.|++.. +|+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999998876 49999999999875 47799999999999999999999986
No 13
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-53 Score=497.01 Aligned_cols=358 Identities=23% Similarity=0.353 Sum_probs=284.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccc-----------
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQ----------- 77 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 77 (650)
+-+++.++...++...|-|..++.+||++++.+.--.+.|.+.+.+...-+.++++-.|.---.+.+..
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666788899999999999999999999999988888988887766655555554443311122222
Q ss_pred ------cceeechhchhhhHhhhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006330 78 ------LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (650)
Q Consensus 78 ------~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (650)
...+..+++..--+..+++...+...+|.+ +..++..++...|...|-.+.++..... ....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~~~---~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDSTS---GGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCCCC---CCccccceeEEE
Confidence 233344444444555566888888899988 8888888877777666655544432211 111233445799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (650)
|+||+|.|+ .+++.+||+|+|++|++|+.+||||||||||||.+.+|. |+|+|. +|.|.+||.|+++ .+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999985 457889999999999999999999999999999999999 788865 8999999999863 68
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
|++||.|.|+|.||.. |++|||.||.. +.+ .++.++.+.+.+++++. +|++++||.+|+++ .+||||||||++|
T Consensus 1063 R~~i~lVsQEP~LF~~-TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG-~QLSGGQKQRIAI 1137 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNG-TIRENIAYGSE-EVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERG-VQLSGGQKQRIAI 1137 (1228)
T ss_pred HHhcceeccCchhhcc-cHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCccc-CcCCchHHHHHHH
Confidence 9999999999999965 99999999821 111 11223334455667774 67999999999776 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||++||+||||||.||+||+++++.|.+.|.+.. .|+|.|+|+|++++ .+.||.|+|+++|+|++.|+|+++++
T Consensus 1138 ARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1138 ARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999999999876 49999999999986 68999999999999999999999986
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=408.75 Aligned_cols=233 Identities=30% Similarity=0.573 Sum_probs=206.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+|+||++.| +++.+++|+||+|++||+++++|||||||||+||+|.+ +.+| ++|+|++||++++.
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 47999999998 46789999999999999999999999999999999995 5544 58999999999864
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
++|++||||-|...|||++||.|||.+...+. ..++++.+++++++++.+||+.. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 68999999999999999999999999976653 35688889999999999999742 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||. .++++++|||++|++|+++..++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 99999999996 468899999999999999999999998
Q ss_pred HHHHHhcCCCCCCCCChH-HHHHHhhcCC
Q 006330 384 MAYFSSIGCSPQIAMNPA-EFLLDLANGN 411 (650)
Q Consensus 384 ~~~f~~~g~~~~~~~npa-d~~~~~~~~~ 411 (650)
+. ||+ ||+-+....+
T Consensus 224 l~-------------~Pan~FV~~f~g~~ 239 (309)
T COG1125 224 LA-------------NPANDFVEDFFGES 239 (309)
T ss_pred Hh-------------CccHHHHHHHhccc
Confidence 73 554 5666665543
No 15
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.9e-52 Score=480.44 Aligned_cols=362 Identities=24% Similarity=0.342 Sum_probs=273.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++..+.-++..+.-.|.+...+|+++.+.++....++.++..+....+.+..-.......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666888899999999999999999999999988877776653333233323344555666777889999
Q ss_pred hHhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccC-CCCC-CCCCCCCCeeEEEEeEEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTR-ERPK-FQTEPTLPIYLKFTDVTY 157 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~nvs~ 157 (650)
.++..+..+.|.+++|..+.. |...++..-. ....++.+.+..+.. +.+. ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 999999999999999986443 2222111100 000011111111111 1111 123344456899999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEE
Q 006330 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (650)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (650)
+|. ..+.++|+|+|++|+|||.+||+|+||||||||+|+|+|. +.| .+|+|++||.|+.+ .+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~p-~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YKP-QQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2334799999999999999999999999999999999985 444 58999999999853 68999999
Q ss_pred EccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 006330 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (650)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (650)
|+||+.+|.. ||+||+.++......+.+..+...+.+++.+.. ++.++||.+|+.+ .+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E~G-~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh--cccccccccccCC-CCCCHHHHHHHHHHHHhccC
Confidence 9999999965 999999987432111111222233445666654 5889999998654 67999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHH
Q 006330 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (650)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~ 386 (650)
|+||+||||||+||+.++..|.+.|.++.. |+|+|+++|+++. .+.||||+||++|+|++.|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999875 7999999999874 789999999999999999999999864
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-51 Score=413.73 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=198.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||+++|.+ +.. |++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 47999999988431 1234579999999999999999999999999999999996 444 468999999988752
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..|++||++||++.|+...||.||+.|+..+. ..++++.+++|.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46899999999999999999999999998765 36789999999999999999987764 5789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+|||||+.+|+||++|||||+|||.+...|+++|+++.++ |.||+++||++. -+.+.||||.||++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999865 999999999965 57889999999999999999999
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8875
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.5e-50 Score=394.44 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=199.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|++++|+++| +++.|++|||++|++||+++||||||+|||||||+|.|.+. +.+|+|+++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 67899999999999999999999999999999999999664 568999999998742
Q ss_pred -----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..++++|++||+-.||..+||+||+.|..+-. ..++++..++.+..-|+..||+.. +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46889999999999999999999999976543 347788888889889999999865 1234678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
+||++|||||+.||+||++||||+||||.++..+.++++++.+. |.|+|++|||..+ ++..||||++|.+|+|+..|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 9999999999764 889999999999999999999
Q ss_pred HHHHHH
Q 006330 380 ASEAMA 385 (650)
Q Consensus 380 ~~~~~~ 385 (650)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-49 Score=415.20 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.++++||+++| + ++.+|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 4 5789999999999999999999999999999999999764 468999999998764
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..+++||||+|++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56889999999999999999999999999887542 24567789999999999974443 3578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
+||+||+.+|++|||||||+||||.++.++.+.|++++++| +||+++||++. ++...||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 58888999999999999999999998
Q ss_pred HHHHHh
Q 006330 384 MAYFSS 389 (650)
Q Consensus 384 ~~~f~~ 389 (650)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776654
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-49 Score=404.33 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.++++||++.| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.+||+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 48999999999 46789999999999999999999999999999999998654 46899999999985
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
+++.+++|||||.+.....+||+|.+.++...+... ....+++++.++++|+.+|+.+..++.+ ..||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 367789999999987777899999999985322111 1124445668999999999999888654 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|.|||||+++|+||+|||||+.||...+.++++.++++++ +|+|||+++||++. +.++||++++|++|+++..|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999995 59999999999875 779999999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-49 Score=414.70 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. .+++|+|.++|++++. .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCh
Confidence 58999999998 2222999999999999999999999999999999999954 3569999999999874 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.+|.||+|||+..|||+|||+|||.|+.+.+ ..++++.++++.++.+.|+|++..|+. +++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 4688999999999999999999999998765 357888999999999999999988754 67999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|++|||. .++..++|||++|++|+|...|+|.|+.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999865 89999999996 46889999999999999999999999854
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=418.99 Aligned_cols=233 Identities=27% Similarity=0.473 Sum_probs=206.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..++++||+++| ++..+|+|||++|++||+++|+|||||||||||++|+|.. . +++|+|.+||+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-Q-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEECCCCC
Confidence 369999999998 4678999999999999999999999999999999999943 3 569999999999874
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..+|.||+|||+..|||+|||+||+.|+.+.+ ....+++.++++.++++.++|++..+. ++.+|||||+|||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 45889999999999999999999999998743 234567788999999999999986664 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||. .+...++|||++|++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999765 99999999996 4688999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHH
Q 006330 385 AYFSSIGCSPQIAMNPAEFLLD 406 (650)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~ 406 (650)
..|.+.-.|||+-+
T Consensus 226 --------~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 --------ERPATRFVADFIGE 239 (352)
T ss_pred --------hCcchHHHHHHhCc
Confidence 34555455666643
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=393.27 Aligned_cols=204 Identities=32% Similarity=0.512 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.+++++|++.| +...+|+|||++|.+||+++|+||||||||||||+|+|... +++|+|.++|+++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 34789999999999999999999999999999999999653 5689999999998 4556
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
..++||||++.|||.+||+||+.++...+. .++++.++++.++|+.+||.+..|. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999987642 4566777799999999999987764 57899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
||+.+|+||+||||+++||+.++..+.+.|.+++++ ++||++||||.. |+..++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999754 899999999975 577899999999984
No 23
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.1e-50 Score=458.22 Aligned_cols=356 Identities=25% Similarity=0.327 Sum_probs=257.4
Q ss_pred hHhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhch
Q 006330 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (650)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (650)
.+..+..++..++..+...|.....+++|+|+.+..+.+++.+..........+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999998888876665444321111111111000111111112333456
Q ss_pred hhhHhhhhhhhhhhhhccccCCCCc----ccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006330 88 GAALSRASSASLGLSFSFTGFTMPP----DEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (650)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (650)
|..++..+..+.|.+.+|..+.... ..+ +..+.+...+.++.++..... .......|+
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP------LKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC------CCCCCCeEE
Confidence 6666666666677666665433211 111 111222222211111111110 111223599
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (650)
|+||+|.|+ +++++|+|+||+++|||.+||+||||||||||+++|.| +++| .+|+|.+||+|+++ .+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25789999999999999999999999999999999996 6655 58999999999863 67
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
|++|+||+||+.+|. -||+|||.++......+.+.++.+.+.+++.+..+ ++++||.+|+++ ..||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G-~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERG-VNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCCC-ccCCHHHHHHHHHH
Confidence 999999999999997 59999999984321111122222333455666655 888999999554 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||+++||+||+||||||+||+.++..+.+.++++. +++|+|+++|++++ .+.||+|+||++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999865 45699999999999999999999986
No 24
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.7e-48 Score=387.74 Aligned_cols=210 Identities=35% Similarity=0.583 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
++++||+..|..++ ....+|++|||+|++||++||||||||||||||++|.|.. .| ++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KP-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CC-CCceEEECCEEcCcCCHH
Confidence 67899999884322 2367999999999999999999999999999999999854 34 69999999988752
Q ss_pred ---hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ---~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
.+ +++||||||+..|.|.+||+||+.+++.... .+....+++++++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 5679999999999999999999998775542 2232567778899999999865552 34679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||+|||||+.+|+||+.||||.+||+.+...|+++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999994
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=393.56 Aligned_cols=219 Identities=31% Similarity=0.556 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++|+++.| ..+++|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y--------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEE--------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 369999999999 22269999999999999999999999999999999999664 56899999999876533
Q ss_pred -cCcEEEEccC---CcCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 228 -~~~i~yV~Q~---~~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
+.+||||||. +.-|| +||+|.+..+...+.. ... .+.+++.++++|+.+|+.+..|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 34566 6999999987533321 112 23447889999999999999998775 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+.. +.++||+|+.|+ +++++.|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999874 889999999995 6789999999
Q ss_pred HHHH
Q 006330 382 EAMA 385 (650)
Q Consensus 382 ~~~~ 385 (650)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
No 26
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=9.2e-50 Score=465.91 Aligned_cols=351 Identities=24% Similarity=0.345 Sum_probs=255.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchh
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (650)
++.++.++..++..+...|..++.+|||.|+.+..+.++|.+.+....+...+....++.+.........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999999999999999999888776655443333333221222222223344556688
Q ss_pred hhHhhhhhhhhhhhhccccCCCCcc----cc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006330 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (650)
+.++..+..+.|.+.+|..+..... .+ +..+.+...+.++..+.. ... ........|+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~----~~~-~~~~~~~~I~~ 481 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT----GTL-APLNLEGLIEF 481 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----CCC-CCCCCCCeEEE
Confidence 8888888888888877765432211 11 111111111111111100 000 00112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hcc
Q 006330 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (650)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (650)
+||+|+|+. .+++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+++ .++
T Consensus 482 ~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 482 QDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EEEEEECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999842 1246799999999999999999999999999999999985 44 458999999999853 578
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
++|+||+|++.+|+. |++|||.++.. ..++++..+ ..++.++. ++++.||.+|+.. ..||||||||
T Consensus 555 ~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~e~i~~al~~a~l~~~i~~--lp~GldT~ige~G-~~LSGGQkQR 625 (711)
T TIGR00958 555 RQVALVGQEPVLFSG-SVRENIAYGLT-----DTPDEEIMAAAKAANAHDFIME--FPNGYDTEVGEKG-SQLSGGQKQR 625 (711)
T ss_pred hhceEEecCcccccc-CHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHHh--CCCccCCcccCCC-CcCCHHHHHH
Confidence 899999999999975 99999998632 122222211 12233333 4677899998653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+++|+|||||||||+||++++..+.+ .. ..+++|+|+++|+++. .+.||+|++|++|++++.|+|+|+
T Consensus 626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 626 IAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHHHH
Confidence 999999999999999999999999999999988 22 2358999999999863 578999999999999999999998
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
++
T Consensus 701 ~~ 702 (711)
T TIGR00958 701 ME 702 (711)
T ss_pred Hh
Confidence 75
No 27
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-49 Score=453.19 Aligned_cols=215 Identities=26% Similarity=0.417 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+|+||+|.|. +++++|+|+||+|+|||.+||+||||||||||+++|+|. + |. +|+|.+||+++.+
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-~-p~-~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-L-PY-QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-C-CC-CcEEEECCEecccCCH
Confidence 599999998762 246799999999999999999999999999999999984 5 54 8999999999853
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+|++|+||+|++.+|+. |++|||.++. | +.++++. ...+++.++. |+++.||.+|+++ ..||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~G-~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQA-AGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--cccccccccccCC-CCCCHH
Confidence 578999999999999975 9999999863 1 2333332 2233444543 4788899998764 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999886 48999999999853 57899999999999999999
Q ss_pred HHHHHH
Q 006330 380 ASEAMA 385 (650)
Q Consensus 380 ~~~~~~ 385 (650)
|+|+++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
No 28
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.3e-49 Score=461.44 Aligned_cols=347 Identities=20% Similarity=0.260 Sum_probs=248.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999888888877665544433321111111111111222223344456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (650)
.++..|..+.|.+++|..+.. |...+.. .+.....+.+++.+. ... ........|+|+
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~-~~~~~~~~I~~~ 455 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----AKT-DPGKLSGAIEVD 455 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----CcC-CCCCCCceEEEE
Confidence 888888888887777664321 2111111 011111111111000 000 001112369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccC
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (650)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|+
T Consensus 456 nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 456 RVTFRYR------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred EEEEEcC------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999985 44 458999999999863 6789
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+||||+||+.+|+. |++|||.++.. .++++.. ..+++.++ .++++.||.+|+.+ ..||||||||+
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e~i~~al~~a~l~~~i~--~lp~G~dt~ige~G-~~LSGGQrQRi 597 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAP------LTLDEAWEAARMAGLAEDIR--AMPMGMHTVISEGG-GTLSGGQRQRL 597 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCC------CCHHHHHHHHHHcCcHHHHH--hccccccccccCCC-CCCCHHHHHHH
Confidence 99999999999975 99999998632 2222211 12233333 34678899998664 67999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+++|+||+||||||+||+.++..+.+.|+++ ++|+|+++|+++. .+.||+|++|++|++++.|+|++++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999876 5899999999853 5789999999999999999999986
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
+
T Consensus 673 ~ 673 (686)
T TIGR03797 673 A 673 (686)
T ss_pred h
Confidence 4
No 29
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-48 Score=382.50 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+..|+ +++++|+|||++|++||++||+|||||||||||++|+|. .+ +++|+|.+||.++.+
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999983 467899999999999999999999999999999999984 43 458999999987642
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+.++.+.|+.+|+.+.+-++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46889999999999999999999999876443321 1223455677889999999988776654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||+|||+|||||+.+|+|+|.|||+++|||.+++.+++.|+++++ +|.|||++.|+.. .+.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999985 4999999999976 477899999999999999
Q ss_pred EecCHHHHHHH
Q 006330 376 YFGKASEAMAY 386 (650)
Q Consensus 376 ~~G~~~~~~~~ 386 (650)
|+|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999987543
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-49 Score=489.81 Aligned_cols=354 Identities=20% Similarity=0.254 Sum_probs=255.9
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhhHhhh
Q 006330 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (650)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (650)
++.+++.+..++|.+...+|||+|+.+....++|.+..........+.....+.....+..++.-..+.-+++|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999999877665443332222222221222233333455566799999988
Q ss_pred hhhhhhhhhccccCCC----------------CccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEE
Q 006330 95 SSASLGLSFSFTGFTM----------------PPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (650)
Q Consensus 95 ~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (650)
+..+.|.++.+..+.+ ..+..+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 8888877655431111 111112222222222111111000000000000111236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 006330 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (650)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--------------------------- 211 (650)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 842 234579999999999999999999999999999999996 56652
Q ss_pred --------------------------cceEEEECCEeCC----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 006330 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (650)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (650)
.+|+|++||+++. +.+|++||||+|++.||+ .||+|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367999999999999996 599999999732 2
Q ss_pred ccHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006330 262 LTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (650)
Q Consensus 262 ~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (650)
.++++. .+.+++++. .|++++||.+|..+ ..||||||||++|||||+++|+|||||||||+||++++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 233332 233445554 46899999999654 5699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEecCCChHHHhhcCEEEEEeC----CeEE-EecCHHHHHH
Q 006330 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (650)
Q Consensus 337 ~L~~l~-~~g~TvI~~~H~~~~~i~~~~D~iivL~~----G~iv-~~G~~~~~~~ 385 (650)
.|+++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-48 Score=391.85 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCE---eCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~---~~~~ 225 (650)
+|+++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ |.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47888888877 46679999999999999999999999999999999999654 56899999999 5443
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
...++||||+|+..+|++|||+|||.|+...+ ....++.+.+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23578999999999999999999999998766 233457788899999999999987555 5788999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|+|++|||+. +++++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999965 6899999999999999999999999
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 843
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=372.38 Aligned_cols=232 Identities=24% Similarity=0.456 Sum_probs=196.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcceEEEECCEeC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~ 223 (650)
..++++||++.| +++.+|+|||+.|++++++||||||||||||||+++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 5788999999999999999999999999999999999 44432 2579999999997
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 006330 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (650)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (650)
.. ++|++||+|||.|.-|| +|++||+.|+.++.. ...++.++.|+..|+...|-+ ..|.+ +....+|
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~L 150 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL--HKSALGL 150 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCC
Confidence 43 57999999999999998 899999999988753 223667778888888776643 22322 1234579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. .+.+..|+..++..|++++
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVE 228 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999985 789999999975 5779999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCChHHHH
Q 006330 377 FGKASEAMAYFSSIGCSPQIAMNPAEFL 404 (650)
Q Consensus 377 ~G~~~~~~~~f~~~g~~~~~~~npad~~ 404 (650)
+|+.+++. ..|...-..||+
T Consensus 229 ~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 229 FGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred EcCHHhhh--------cCccHHHHHHHh
Confidence 99999874 345555555665
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.2e-46 Score=398.16 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..+++||||||++.+++.+||+||+.|.+..+ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 45788999999999999999999999866543 2334455667889999999988777765 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999986
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 4
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-47 Score=369.62 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=200.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|++.+++.+|+ ...++++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 378899999982 23459999999999999999999999999999999999765 468999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..|++||.++.+..+|..||++|||.|.+++. .+...+.++++.++.+.|+|.++.|+++| ++|-|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 56899999998889999999999999998875 46778889999999999999999999875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|||||+++|++++|||||||||..+...+.+.++++.+.|++||++||.+ +++..+||+|++|++|++++.|+++++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999998899999999996 56888999999999999999999988765
Q ss_pred H
Q 006330 386 Y 386 (650)
Q Consensus 386 ~ 386 (650)
.
T Consensus 223 r 223 (245)
T COG4555 223 R 223 (245)
T ss_pred H
Confidence 3
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-47 Score=364.63 Aligned_cols=213 Identities=29% Similarity=0.472 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+|+||++.|. . .+++|+||||+|++||++-|+||||||||||||+|.+... ++.|+|++||+++.+
T Consensus 1 mI~f~~V~k~Y~------~-g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP------G-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC------C-CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999983 2 3679999999999999999999999999999999998543 568999999999852
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
.+|++||+||||..|.+..||+||+.|+.+.. ..+.++.+++|.++|+..||.+..+. .+.+|||||+
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47999999999999999999999999998764 35678889999999999999987764 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||+||||++.+|++||.||||.+|||..+.+|++++.++.+.|.|||+.||+.. .+-.+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999953 4556668999999999987654
No 36
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-48 Score=457.29 Aligned_cols=354 Identities=23% Similarity=0.285 Sum_probs=248.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++.+++-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677788889999999999999999988888876665544432221111111100011112222334456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccC-CCC-CCCCCCCCCeeEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTR-ERP-KFQTEPTLPIYLK 151 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ 151 (650)
.++..|..+.|.+..|..+.. |...+.. .+.....+.+++...... ... .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888888888888877664332 1111111 011111111111000000 000 0000011224699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (650)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.|+.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999985 44 458999999999853 57
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
|++|+||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .++++.||.+|+.+ .+|||||||
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~G-~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEGG-ANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccCC-CCCCHHHHH
Confidence 8999999999999965 9999998752 1 123332221 2233333 34678899998664 679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|++|||||+++|+|||||||||+||+.++..+.+.|++ .++|+|++||+++. ...||+|++|++|++++.|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 57799999999999999999999
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
No 37
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-48 Score=455.12 Aligned_cols=353 Identities=24% Similarity=0.352 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++..+..++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667778888889999999999999999888888887665543332221111111100111112222334456888
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (650)
.++..|..+.|.+++|..+.. |...+.. .+.....+.+++.+ . .+.....+.....|+|+
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~--~--~~~~~~~~~~~~~I~~~ 467 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP--E--GTRFLHRPRLQGEIEFR 467 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--C--CCCCCCCCCccceEEEE
Confidence 888888888888877764332 2111110 01111111111000 0 00000011122369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccC
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (650)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.|+.+ .+|+
T Consensus 468 ~vsf~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 468 NVSFAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred EEEEEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999985 44 458999999999863 5789
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+|+||+|++.+|+. |++|||.++.. ..++++.. ..+++.++. ++++.||.+|+.+ ..||||||||+
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~gl~T~i~e~G-~~LSgGQrQRl 610 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVRR--HPDGLDMQIGERG-RSLSGGQRQAV 610 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHHh--CcccccceecCCC-CCCCHHHHHHH
Confidence 99999999999975 99999998631 12333222 223344443 5778899998764 56999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+|+|++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999999999999999999864 8999999999864 5789999999999999999999987
Q ss_pred HH
Q 006330 385 AY 386 (650)
Q Consensus 385 ~~ 386 (650)
+.
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 64
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.3e-46 Score=400.58 Aligned_cols=221 Identities=24% Similarity=0.407 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+++||+++|..+ ...+++|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 37999999998311 123579999999999999999999999999999999999543 468999999998752
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..+++||||||++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|.. +.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 24678999999999999999999999976532 234556677899999999998776654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 999999999965 57789999999999999999999
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
No 39
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.5e-48 Score=456.22 Aligned_cols=352 Identities=21% Similarity=0.264 Sum_probs=252.7
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchh
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (650)
++.++.+++-++..+...|.+...+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777788888999999999999999998888887766554443322111111110011111222234455688
Q ss_pred hhHhhhhhhhhhhhhccccCCC----CccccccC------------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006330 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (650)
+.++..|..+.|.+++|..+.. |...+... +.....+.+.+.+... .....+.....|++
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~----~~~~~~~~~~~I~~ 476 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK----KRTELNNLNGDIVI 476 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc----cccCCCCCCCcEEE
Confidence 8888888888888887765432 22221111 1111111111110000 00001112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hcc
Q 006330 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (650)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (650)
+||+|+|+ .++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|++||.++++ .+|
T Consensus 477 ~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 477 NDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred EEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHH
Confidence 99999982 235799999999999999999999999999999999985 44 458999999999753 678
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
++||||+|++.+|+. |++|||.++.. + ..++++. ...+++.++ .++.+.||.+|+.+ ..||||||||
T Consensus 548 ~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~G-~~LSgGQrQR 619 (708)
T TIGR01193 548 QFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEEG-SSISGGQKQR 619 (708)
T ss_pred HheEEEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCCC-CCCCHHHHHH
Confidence 999999999999975 99999998631 1 1233222 222334444 34778899998654 6799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+++|+||+||||||+||+.++..+.+.|+++ +++|+|+++|+++. .+.||+|++|++|++++.|+|+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999985 47999999999863 578999999999999999999998
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
++
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 75
No 40
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=445.07 Aligned_cols=357 Identities=20% Similarity=0.280 Sum_probs=246.7
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchh
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (650)
+..++.+++.++..+...+.....+++|+++.+....++|.+..........+...........+..+..-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777788888999999999999999998888888766554443221111111110111111111223334566
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCccccccC-------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEE
Q 006330 89 AALSRASSASLGLSFSFTGFT----MPPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~ 157 (650)
+..+..|..+.|.+..+..+. .|...+... ++ ...++.+..+..+.........+..+..|+++||+|
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~-~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf 349 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA-ACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTF 349 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEE
Confidence 666666777777664443221 122211110 00 000011111100000000000111123699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEE
Q 006330 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (650)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (650)
+|+ ..++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||+++.+ .++++|+|
T Consensus 350 ~y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 350 TYP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D-IDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred ecC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCceEEECCEEhhhcCHHHHHhhceE
Confidence 983 23467999999999999999999999999999999999854 3 458999999999753 56889999
Q ss_pred EccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
||||+.+|+. |++|||.++. ++..++++..+ .+++.++. |+++.||.+|+.+ ..||||||||++|||
T Consensus 422 v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~--lp~Gldt~ig~~g-~~LSGGqrQRi~LAR 493 (582)
T PRK11176 422 VSQNVHLFND-TIANNIAYAR----TEQYSREQIEEAARMAYAMDFINK--MDNGLDTVIGENG-VLLSGGQRQRIAIAR 493 (582)
T ss_pred EccCceeecc-hHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHh--cccccCceeCCCC-CcCCHHHHHHHHHHH
Confidence 9999999975 9999998852 11223333222 22333333 5778899998764 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+|+++++
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999854 799999999985 467899999999999999999999874
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-46 Score=380.62 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998642
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.|+||+|++.+++.+||+||+.++..... ..+.++..+++.++++.+||.+..++. +..|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346789999999999999999999998754221 123445566788999999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||+|++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999975 477889999999999999999988
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 763
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.1e-46 Score=400.80 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 58999999998 34579999999999999999999999999999999999643 568999999998753 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.||||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|.+..++ .+.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999987543 24456677889999999999887765 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.+
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 6889999999999999999999998854
No 43
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=401.02 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 489999999982 24579999999999999999999999999999999999643 568999999998753 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987532 23455667789999999999876665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999865 899999999965 588999999999999999999999874
No 44
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-48 Score=420.44 Aligned_cols=221 Identities=33% Similarity=0.560 Sum_probs=188.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+|+||+|+|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|++||+++.+
T Consensus 350 ~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEVS 419 (591)
T ss_pred CcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhhC
Confidence 4699999999992 34569999999999999999999999999999999995 554 58999999999853
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
.+|+.|||||||..||.+ ||.+||.|+..-...+.+-+..++...++.+.. +++++.|.+|+++. .||||||||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG~-~LSGGekQr 495 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERGL-MLSGGEKQR 495 (591)
T ss_pred hHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhccc-ccccchHHH
Confidence 578999999999999976 999999998532111111122233345556654 48899999998764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
|+||||+++||+|+++|||||+||.+++.++++.+.+.. .++|+|++.|+++ ....||+|++|++|++.+.|+|+|+
T Consensus 496 vslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 496 VSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred HHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHH
Confidence 999999999999999999999999999999999999843 5999999999976 4688999999999999999999999
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
+.
T Consensus 573 l~ 574 (591)
T KOG0057|consen 573 LA 574 (591)
T ss_pred hh
Confidence 87
No 45
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-48 Score=440.92 Aligned_cols=349 Identities=22% Similarity=0.318 Sum_probs=245.1
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchh
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (650)
+..++.++..++.++...|.+...+|+|+|+.+..+.+++.+......+...+.....+...........-..+.-++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888999999999999999999999888888776665444332211111110001111111112223455
Q ss_pred hhHhhhhhhhhhhhhccccCC-----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006330 89 AALSRASSASLGLSFSFTGFT-----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~-----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (650)
+.++ .+..+.|.+.+|..+. .|...+ +..+..+..+.++..+. +...........|+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~-----~~~~~~~~~~~~i~ 340 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF-----PTTSTAAADQVSLT 340 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CcccCCCCCCCeEE
Confidence 5543 3555566655543221 011111 11111111111111100 00000011223699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (650)
|+||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+++|+|. ++ +.+|+|.+||+++++ .+
T Consensus 341 ~~~v~f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 341 LNNVSFTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred EEEEEEECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHH
Confidence 999999983 1235799999999999999999999999999999999985 44 458999999999763 57
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCCCCHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGer 301 (650)
|++|+||+|++.+|+. |++|||.++.. ..++ +++.++++..++ +++.||.+|+. ...||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqr 481 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP-----NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQ 481 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC-----ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHH
Confidence 8899999999999975 99999998631 1222 234455555544 56788999865 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. ...||+|++|++|++++.|+|+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 48999999999864 4679999999999999999999
Q ss_pred HHHH
Q 006330 382 EAMA 385 (650)
Q Consensus 382 ~~~~ 385 (650)
|+++
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 9874
No 46
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-46 Score=398.76 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||+++| +++.+|+|+|++|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999643 568999999998753 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .+..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 24456677889999999999876654 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578999999999999999999999874
No 47
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.3e-45 Score=397.73 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc--eEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~--G~I~~~G~~~~~- 225 (650)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCC
Confidence 58999999998 24569999999999999999999999999999999999543 568 999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.|+||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 24578999999999999999999999987543 245566677899999999998877654 578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999965 5788999999999999999999998
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
No 48
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-45 Score=393.84 Aligned_cols=220 Identities=28% Similarity=0.418 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|.+. +++|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 34679999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.|||+||++.+++.+||+||+.+....+. .+..+..++++++++.++|.+..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 457789999999999999999999997654431 233445567788999999988777654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 688899999999999999999999986
Q ss_pred HH
Q 006330 385 AY 386 (650)
Q Consensus 385 ~~ 386 (650)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-46 Score=369.77 Aligned_cols=221 Identities=28% Similarity=0.434 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|+++.|..+. ...++|+||||+|.+||+++|+|+||||||||.++|+|... +.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCcccc
Confidence 589999999994321 12369999999999999999999999999999999999543 468999999988754
Q ss_pred --hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..++.|-+||||| .+.|..||++.|.-+... ...++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 3578899999998 588999999999876543 223333 334899999999986432 356789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.. .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999865 889999999975 58889999999999999999999
Q ss_pred HHHHH
Q 006330 381 SEAMA 385 (650)
Q Consensus 381 ~~~~~ 385 (650)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
No 50
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-46 Score=375.13 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.++++|++|+|+ .. +.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999982 12 689999999999999999999999999999999999664 45899999999865
Q ss_pred -hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 225 -~~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..+++++|||+|+| .+|. -||.|.+.|+.... .++.++.++++.++++.+|+.+..+. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25789999999997 5665 59999999997643 45677789999999999999987765 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++|||.. .+..+||++++|++|+++++|+|
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877 799999999965 58888999999999999999999
Q ss_pred HHHHH
Q 006330 381 SEAMA 385 (650)
Q Consensus 381 ~~~~~ 385 (650)
.++..
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 88764
No 51
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=394.71 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+||+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999543 468999999998753 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.++.|+||+|++.+||++||+||+.|+...... ...+.++..+++.++++.++|++..++ ++..|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 357899999999999999999999998653211 123455667789999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 899999999975 578899999999999999999999885
No 52
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.8e-45 Score=396.60 Aligned_cols=218 Identities=25% Similarity=0.443 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|++++| +++++|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..++.||||||++.+||++||+|||.|+...+ ..+..+.+++++++++.+||.+..+.. +.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHH
Confidence 34678999999999999999999999986532 234556667889999999998777654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 999999999965 578899999999999999999999875
No 53
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.9e-47 Score=431.75 Aligned_cols=355 Identities=25% Similarity=0.340 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhh
Q 006330 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (650)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (650)
.++.++..++..+...|.....+|+|+|+.+....++|.+......+...+.....+.....+..+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777888888899999999999998888876665443322111111111011111122223344568888
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006330 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (650)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (650)
++..|..+.|.++++..+.. |...+..... ....++.+.++..+...+.. ..+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCCeEEEEEEEEEcC
Confidence 88888888888877764332 1111111000 00001111111111000000 0111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEcc
Q 006330 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (650)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (650)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||+++.. .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 23467999999999999999999999999999999999854 3 458999999998753 56889999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHH-----HHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~ 311 (650)
++.+|+. |++||+.++.. ..++++ +....+++++.+ +++.||.+|.. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999976 99999986421 122222 122334555544 66778888764 4679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998766899999999986 357899999999999999999998764
No 54
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-47 Score=442.37 Aligned_cols=351 Identities=23% Similarity=0.338 Sum_probs=251.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++.+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455666677778888999999999999999999999887776654432221111111000011111122334456888
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (650)
.++..|..+.|.+..|..+.. |...+.. .+.....+.++..+. ......+.....|+++
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~i~~~ 459 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AGLAALPELRGAITFE 459 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CCCCCCCCCCCeEEEE
Confidence 888888888888877764321 2111111 111111111111000 0000111223469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccC
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (650)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|++||+++++ .+|+
T Consensus 460 ~vsf~y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-~~-p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 460 NIRFRYA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-YT-PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred EEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEehhhCCHHHHHH
Confidence 9999983 2345799999999999999999999999999999999985 43 458999999999863 5788
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
.|+||+|++.+|+. |++|||.++. + ..+.++.. ..+++.++. ++++.||.+|+. ..+||||||||+
T Consensus 532 ~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri 602 (694)
T TIGR01846 532 QMGVVLQENVLFSR-SIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRI 602 (694)
T ss_pred hCeEEccCCeehhh-hHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHH
Confidence 99999999999975 9999998752 1 12332222 223344443 467789999865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+++|+|||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|++|++++.|++++++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999985 58999999999864 4679999999999999999999987
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
+
T Consensus 680 ~ 680 (694)
T TIGR01846 680 A 680 (694)
T ss_pred H
Confidence 4
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-45 Score=368.88 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999998 34579999999999999999999999999999999999653 468999999987642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|++..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4678999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999975 57788999999999999999988763
No 56
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.9e-45 Score=372.96 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 23569999999999999999999999999999999999653 468999999998753
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC-------ccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
. .++.++|++|++.+++.+||+||+.++........ ....+..++++++++.+||.+..++. ++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 2 24579999999999999999999998754321110 01334456788999999998766554 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999975 57788999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
No 57
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.9e-45 Score=385.48 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 58999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.+ ..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHH
Confidence 34678999999999999999999998754432 1233444566788999999987777654 589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999999998864
No 58
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-45 Score=394.34 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|++++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 24579999999999999999999999999999999999643 568999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..++.||||+|++.+||++||+||+.|+...+ ..+..+.++++.++++.++|.+..+. .+.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986543 23456667789999999999876664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 4899999999965 578999999999999999999999875
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
No 59
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.5e-45 Score=368.69 Aligned_cols=208 Identities=27% Similarity=0.475 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. .+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 2 IRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred eEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChh
Confidence 78999999982 112469999999999999999999999999999999999643 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.++|++|++.+++.+||+||+.++...+ ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 145 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQ 145 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24678999999999999899999999876432 123344566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999877999999999975 46678999999999974
No 60
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=391.17 Aligned_cols=220 Identities=25% Similarity=0.405 Sum_probs=190.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|..+ ..++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 i~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 2 IELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEK 75 (343)
T ss_pred EEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHH
Confidence 7899999998310 124579999999999999999999999999999999999653 468999999998752
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..+++||||+|++.+++.+||+||+.++.... ..+..+..+++.++++.+||.+..++. +..|||||||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~q 147 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 23678999999999999999999999876532 234455567789999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.|+++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 899999999975 577889999999999999999998
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 227 ~~~ 229 (343)
T PRK11153 227 EVF 229 (343)
T ss_pred HHH
Confidence 875
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-45 Score=371.97 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48999999998 23579999999999999999999999999999999999643 468999999998743 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.++.++||+|++.+++.+||+||+.++...+.. ......+..++++++++.+||.+..++. +..|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333456788899999997665554 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||+|++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 467889999999999999999988763
No 62
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-45 Score=366.20 Aligned_cols=210 Identities=31% Similarity=0.538 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4789999998 23579999999999999999999999999999999999653 468999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+||+||+.++.... ........+++.++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875432 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||+|++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467889999999999998765
No 63
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.5e-47 Score=432.62 Aligned_cols=344 Identities=19% Similarity=0.246 Sum_probs=235.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccce-eeeecccccceeechhchh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (650)
..+..+++..+......|.....+|+|+|+.+....+++.+..+.......+.....+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677777788888889999999987777777765544333211000000000 0000001111111111222
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006330 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (650)
+. +..|..+.|.+..+..+.. |...+ +..+..+..+.++. +.. .. ..+.....|++
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~----~~~-~~--~~~~~~~~i~~ 343 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ----QYG-ND--DRPLQSGRIDI 343 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCC-CC--ccCCCCCeEEE
Confidence 22 3455566666666543221 11111 11111111111100 000 00 00111235999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hcc
Q 006330 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (650)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (650)
+||+|+|+ .++++|+|+|++|++||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||.++++ .++
T Consensus 344 ~~v~f~y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 344 DNVSFAYR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred EEEEEEeC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHH
Confidence 99999983 235699999999999999999999999999999999985 44 458999999999853 578
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGer 301 (650)
++|+||+|++.+|++ |++|||.++. ..+++ ++.++++..| |+++.||.+|..+ ..||||||
T Consensus 415 ~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g-~~LSGGqr 482 (592)
T PRK10790 415 QGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQK 482 (592)
T ss_pred hheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCC-CCCCHHHH
Confidence 999999999999986 9999999863 12222 2334444433 4678899998654 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ....||+|++|++|++++.|+|+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 799999999985 45779999999999999999999
Q ss_pred HHHH
Q 006330 382 EAMA 385 (650)
Q Consensus 382 ~~~~ 385 (650)
++++
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 9864
No 64
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=380.47 Aligned_cols=235 Identities=31% Similarity=0.445 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
+|+++||+|.|..+ ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 37899999998311 0112469999999999999999999999999999999999653 46899999999874
Q ss_pred ----hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 225 ----~~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
...++.+|||+|++ .+|+ .||.||+.|+.... ..+.++.++++.++++.+||. +..++ .+..||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13567899999986 5675 59999999876432 234556677889999999995 34443 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46788999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCCCCC
Q 006330 378 GKASEAMA---YFSSIGCSPQIAM 398 (650)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~~~~ 398 (650)
|+++++.. .+...|+.+|...
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHH
Confidence 99998753 3456677666543
No 65
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8e-47 Score=431.25 Aligned_cols=350 Identities=22% Similarity=0.283 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..++.++..++..+...|...+.+++|+|+.+....++|.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788889999999999999999998888887665433332221111111100011111112333455788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006330 90 ALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (650)
.++..|..+.|.+++|..+.. |...+ +..+.....+.++..+.. + ...+.....|+++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~----~--~~~~~~~~~I~~~ 317 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG----S--EPVPEGRGELDVN 317 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----C--CCCCCCCCcEEEE
Confidence 888888888888777664332 11111 111111111111100000 0 0011112359999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccC
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (650)
|++|+|+ ..++++|+|+|++|+||+.++|+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+++
T Consensus 318 ~v~~~y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-~~-p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 318 IRQFTYP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-FD-VSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred EEEEECC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCCEEEECCEEHhhCCHHHHHh
Confidence 9999983 2245799999999999999999999999999999999985 43 468999999998753 5688
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH-----HHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
.|+||+|++.+|+. |++|||.++. + ..++++..+.. ++.+. .++++.||.+|+. ...||||||||+
T Consensus 390 ~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~~~~~~~l~~~i~--~lp~gl~t~~~~~-g~~LSgGq~qRi 460 (569)
T PRK10789 390 RLAVVSQTPFLFSD-TVANNIALGR----P-DATQQEIEHVARLASVHDDIL--RLPQGYDTEVGER-GVMLSGGQKQRI 460 (569)
T ss_pred heEEEccCCeeccc-cHHHHHhcCC----C-CCCHHHHHHHHHHcCCHHHHH--hCcCcccceecCC-CCcCCHHHHHHH
Confidence 89999999999975 9999998753 1 12332222211 12222 4577889998865 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+++|+||||||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.||+|++|++|++++.|++++++
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999975 58999999999853 5779999999999999999999986
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
+
T Consensus 538 ~ 538 (569)
T PRK10789 538 Q 538 (569)
T ss_pred H
Confidence 4
No 66
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.5e-45 Score=369.93 Aligned_cols=216 Identities=27% Similarity=0.507 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998642
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
. .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++. +..||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 24579999999999999999999998654321 23344556788999999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||+|++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999988764
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-45 Score=370.20 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+|+.+|++||+.+....+ ........+.+.++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23578999999999999899999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999865 899999999975 577889999999999999999988
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
No 68
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-45 Score=393.45 Aligned_cols=218 Identities=28% Similarity=0.482 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (650)
.|+++|++++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999653 468999999998753 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.|+||+|++.+|+.+||+||+.|+...+ ..+.++.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986533 234455667889999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5778999999999999999999998753
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-45 Score=365.06 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.+||+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4789999988 24569999999999999999999999999999999999643 4689999999987655677
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+|+.+..++. +..||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999899999999875433 123344556788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 467889999999999998764
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4e-45 Score=369.94 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCCh-
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~- 225 (650)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999988 245799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..++.++|++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 3467899999999888 7899999998754321 11222345678889999999866554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.+.||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999975 56788999999999999999987
Q ss_pred HH
Q 006330 381 SE 382 (650)
Q Consensus 381 ~~ 382 (650)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-45 Score=366.09 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=183.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|+++.|... ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~-~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT-GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-cccC
Confidence 4789999998210 011579999999999999999999999999999999999653 46899999999875 3467
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++||+|++.+++.+||+||+.++...+ ....+...+++.++++.+||.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999998899999999875432 123344556788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEe--CCeEEEecCHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~--~G~iv~~G~~~ 381 (650)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
No 72
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.9e-45 Score=366.31 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +++|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 47899999982 112679999999999999999999999999999999999643 468999999998742 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.++||+|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998899999999875432 123344456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999976 699999999976 46678999999999999999998764
No 73
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-46 Score=429.87 Aligned_cols=354 Identities=21% Similarity=0.288 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhh
Q 006330 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (650)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (650)
.+..++...+..+...+...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667778888888999999999999888888876655433222111111111111111122223444567888
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006330 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (650)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (650)
++..|..+.|.++.+..+.. |...+..... ....++.+.+...+...............|+++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 88888878887766664221 2111111000 0000011111111100000000011123599999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEcc
Q 006330 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (650)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (650)
..++++|+|+|++|++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.++++ .++++|+||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999954 3 458999999998753 56889999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
++.+|+. |++|||.++. +++.++++ +.++++..| |+++.||.+|+. ...||||||||++||||
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~----~~~~~~~~----i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCC----CCCCCHHH----HHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 9999999763 11223322 333333333 467789999876 35799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
++++|+|++||||||+||+.++..+.+.|+++. +++|+|++||++. ..+.||+|++|++|++++.|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999885 4799999999975 468899999999999999999999863
No 74
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-45 Score=370.57 Aligned_cols=220 Identities=29% Similarity=0.488 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999882 11579999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-----CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
..++.++|++|++.+|+.+||+||+.++...... .........+++.++++.++|.+..++. +..||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCC
Confidence 2457899999999999889999999876421100 0111223456788899999997655543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4777999999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99998763
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-45 Score=347.89 Aligned_cols=214 Identities=26% Similarity=0.455 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|.+++|.|+|.. .==..+++|++||++||+||||||||||||+|+|... |.+|+|++||++... ..
T Consensus 2 l~L~~V~~~y~~----------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH----------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc----------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 567899999821 2235889999999999999999999999999999543 468999999999753 45
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
.|-++.+||+.+||.++||.+|+.++..-.+ .+ .++.+++++.++..+||..+.+.+ +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 7789999999999999999999999864221 12 355677899999999999877754 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|+|+++-+||+||||+|+|||.-+.++..++.++++ ++.|++++||+|+ ++.+.+|+++++++|||.+.|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999985 4899999999987 478999999999999999999988865
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=376.48 Aligned_cols=222 Identities=27% Similarity=0.470 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998311 0112579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCH
Q 006330 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (650)
..+++||||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 469999999875432 245566667889999999996 44443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999965 46788999999999999999
Q ss_pred cCHHHHHH
Q 006330 378 GKASEAMA 385 (650)
Q Consensus 378 G~~~~~~~ 385 (650)
|+++++.+
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13637 227 GTPREVFK 234 (287)
T ss_pred CCHHHHHh
Confidence 99998753
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.4e-44 Score=363.54 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998311 011279999999999999999999999999999999999543 468999999998753 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999899999998865432 123445567788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++...||++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 577889999999999998764
No 78
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-44 Score=362.59 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4789999998 23579999999999999999999999999999999999653 468999999998743 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+||+||+.++...+ ....++.++++.++++.+|+.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 567889999999999999876
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-44 Score=369.31 Aligned_cols=216 Identities=30% Similarity=0.541 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
++++||+++|. + +.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRYG--------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEeC--------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 46899999982 3 569999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+++.+||+||+.++.... ....++..+++.++++.+||.+ ..++ .+..|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34678999999999998899999999875432 1234445667889999999975 4443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999865 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 80
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2e-44 Score=380.44 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 48999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 123444556788999999998877765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999965 799999999975 5788999999999999999999999865
No 81
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-44 Score=365.38 Aligned_cols=214 Identities=28% Similarity=0.500 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++++|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999988 24579999999999999999999999999999999999653 468999999998742
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHH
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++. +..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122344566777777 466555543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+.||+|++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 47788999999999999999998876
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-44 Score=367.89 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=187.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChh
Confidence 7899999998 24579999999999999999999999999999999999643 568999999998752
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||++..+.. +..||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 346789999999999988999999988642111 123444556788999999997666543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 46778999999999999999998876
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
No 83
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.6e-45 Score=370.68 Aligned_cols=219 Identities=29% Similarity=0.467 Sum_probs=184.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHH
Confidence 78999999881 14579999999999999999999999999999999999643 468999999998642
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-----CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
.+++.++||+|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..+.. +..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCC
Confidence 2467899999999999889999999875321000 0011233456788899999997665543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999975 4678899999999999999
Q ss_pred ecCHHHH
Q 006330 377 FGKASEA 383 (650)
Q Consensus 377 ~G~~~~~ 383 (650)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998875
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.7e-44 Score=369.07 Aligned_cols=218 Identities=30% Similarity=0.502 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 48999999998 23579999999999999999999999999999999999653 468999999988641
Q ss_pred ---------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ---------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
..++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..++. +..|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhC
Confidence 245679999999999988999999988643111 123344556788999999998665543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778899999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
No 85
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-44 Score=381.86 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=183.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---hccCcEEEEccCCcCCCCCC
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lT 245 (650)
++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. ..++++||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 468999999998743 35678999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (650)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++. ++.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 233445566788999999998777765 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHH
Q 006330 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~ 386 (650)
||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999988654
No 86
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.2e-46 Score=426.98 Aligned_cols=354 Identities=22% Similarity=0.321 Sum_probs=243.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..+..+++..+.++...+.....+++|.|+.+..+.+++.+......+-..+.....+.....+..+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666788888889999999999999998888777776655543321111111111111111222222333445777
Q ss_pred hHhhhhhhhhhhhhccccCC----CCccccccC-------CCCCCCCCccccccccC--CCCCCCCCCCCCeeEEEEeEE
Q 006330 90 ALSRASSASLGLSFSFTGFT----MPPDEIADS-------KPFSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVT 156 (650)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~nvs 156 (650)
.++..|..+.|.++.+..+. .|...+... .. ...++.+.++..+. ..+.....+.....|+++||+
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vs 341 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAP-KLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVS 341 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEE
Confidence 77777777777766554321 111111100 00 00000000000000 000000011112369999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEE
Q 006330 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (650)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (650)
|+|+ +++++|+|+|++++|||.++|+|+||||||||+|+|+|.. + +.+|+|.+||.++.+ .++++|+
T Consensus 342 f~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 342 FSYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-D-PQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCCEEEECCEEhhhCCHHHHHhheE
Confidence 9983 2246999999999999999999999999999999999854 3 458999999998863 5788999
Q ss_pred EEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
||+|++.+|+. |++|||.++. + ..++++..+ ..++.++. ++++.||.+|+. ...||||||||++||
T Consensus 413 ~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRialA 483 (588)
T PRK13657 413 VVFQDAGLFNR-SIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRLAIA 483 (588)
T ss_pred EEecCcccccc-cHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHHHHH
Confidence 99999999975 9999999862 1 123332221 22333332 467789988765 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999998754 799999999975 468899999999999999999999864
No 87
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-44 Score=376.64 Aligned_cols=232 Identities=27% Similarity=0.451 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|... ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38999999999311 0112569999999999999999999999999999999999653 468999999998731
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
..++.||||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..++ .+..||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 3457899999986 4664 69999999875432 234555566789999999996 44454 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||||++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5778999999999999999
Q ss_pred ecCHHHHHH---HHHhcCCCCC
Q 006330 377 FGKASEAMA---YFSSIGCSPQ 395 (650)
Q Consensus 377 ~G~~~~~~~---~f~~~g~~~~ 395 (650)
.|+++++.. .+...+..+|
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCC
Confidence 999988742 2334455443
No 88
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.7e-44 Score=392.94 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 35679999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
.++++||||+|++.+++.+||+||+.++....... ........++++++++.+|+.+..++. ++.||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45778999999999988899999999864321100 011234556789999999998777654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999999985
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 4
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.2e-44 Score=373.06 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..++.++|++|++.+++.+||.||+.++..... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 235679999999999998999999998643211 123444456788899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999965 47788999999999999999999
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-44 Score=380.14 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=192.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+|.|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998311 0113469999999999999999999999999999999999653 468999999987632
Q ss_pred ------------------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccc
Q 006330 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (650)
Q Consensus 226 ------------------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (650)
.+++.|+||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 49999999875422 234455566788999999996 334
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcC
Q 006330 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (650)
Q Consensus 285 ~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D 364 (650)
++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45689999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEeCCeEEEecCHHHHHH---HHHhcCCCCC
Q 006330 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (650)
Q Consensus 365 ~iivL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 395 (650)
+|++|++|++++.|+++++.. .+...|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999998743 2344555544
No 91
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-44 Score=372.54 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|+ ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 13469999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.|+||+|++. .+..+||.||+.|+.... .....+.++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34678999999973 334579999999875422 233445556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999965 46688999999999999999998754
No 92
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.8e-46 Score=423.35 Aligned_cols=323 Identities=22% Similarity=0.265 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhhH
Q 006330 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (650)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (650)
++.++..++..+...|.....+|+|+|+.+....+++.+......+...+.....+...........-..+.-++.|+.+
T Consensus 183 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (529)
T TIGR02868 183 VALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA 262 (529)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466667788899999999999999999999999988776655444332111111110011111111122334567777
Q ss_pred hhhhhhhhhhhhccccCCC----Cccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeE
Q 006330 92 SRASSASLGLSFSFTGFTM----PPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (650)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nv 155 (650)
+..|..+.|.+.++..+.. |... .+..+..+..+.++....... +.....+.....|+|+||
T Consensus 263 ~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV--PAAGALGLGKPTLELRDL 340 (529)
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC--CCCcccCCCCceEEEEEE
Confidence 7777777776666554321 1111 111111111111111100000 000001112236999999
Q ss_pred EEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---hccCcEE
Q 006330 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIG 232 (650)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~ 232 (650)
+|+|+ +++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.|+++ ++|++|+
T Consensus 341 sf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 341 SFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhheE
Confidence 99983 224699999999999999999999999999999999984 44 458999999998763 5678999
Q ss_pred EEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
||||++.+|+. |++|||.++. + ..++++..+ .+++.++ .|+++.||.+|+.+ ..||||||||++||
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiaiA 482 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLALA 482 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHHH
Confidence 99999999976 9999999863 1 123332221 2233343 35788999999765 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~ 355 (650)
|||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999864 489999999984
No 93
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-44 Score=362.35 Aligned_cols=209 Identities=32% Similarity=0.540 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|... ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 4789999998210 011579999999999999999999999999999999999653 468999999998742
Q ss_pred ---h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ---~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
. .++.++|++|++.+++.+||+||+.++...+. .......+++.++++.+||.+..++. +..||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 24679999999999999999999998764321 22334456788999999998766554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. + ..||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999764 5 48999999999974
No 94
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.4e-44 Score=359.51 Aligned_cols=206 Identities=32% Similarity=0.535 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4789999998 24579999999999999999999999999999999999653 568999999988742 34
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++||+|++.+++.+||+||+.+....+. . ..++++++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 6779999999999989999999998754321 1 234678889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999975 466789999999999998765
No 95
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-45 Score=355.49 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|..+|+.++| ++++++++||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58889999988 56789999999999999999999999999999999999654 568999999999874
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..|..|||+||++..|..+||+|||......+.. .....+.+.+++++|++|++.+.++.+ ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 3456699999999999999999999988776532 233456677789999999999998875 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|+++|..|+++-|+.. +....|||.+++++|+++..|+|+++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 57799999999999999999999998
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 227 ~ 227 (243)
T COG1137 227 V 227 (243)
T ss_pred h
Confidence 6
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7e-44 Score=365.64 Aligned_cols=215 Identities=26% Similarity=0.460 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-----ceEEEECCEeCC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPYS 224 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~-----~G~I~~~G~~~~ 224 (650)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 2 IEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEcc
Confidence 7899999998 23469999999999999999999999999999999999653 33 899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccCC
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (650)
. ..++.++|++|++.+++ +||+||+.+....+. ..+..+..+++.++++.+||. +..++ .+.
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~ 143 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SAL 143 (247)
T ss_pred ccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Ccc
Confidence 2 34678999999999998 899999998754321 123344556788999999997 43443 456
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGEL 221 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999977 589999999975 47788999999999999
Q ss_pred EEecCHHHHH
Q 006330 375 LYFGKASEAM 384 (650)
Q Consensus 375 v~~G~~~~~~ 384 (650)
++.|+++++.
T Consensus 222 ~~~~~~~~~~ 231 (247)
T TIGR00972 222 VEYGPTEQIF 231 (247)
T ss_pred EEeCCHHHHH
Confidence 9999998864
No 97
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-44 Score=371.84 Aligned_cols=228 Identities=24% Similarity=0.440 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|.. ...+.+|+|+||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 112469999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..+++++||+|++ .+++.+||+|||.|+.... ..+.++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 3567899999997 3566789999999875432 234555667789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999754 5 5799999999999999999988
Q ss_pred HHH---HHHhcCCC
Q 006330 383 AMA---YFSSIGCS 393 (650)
Q Consensus 383 ~~~---~f~~~g~~ 393 (650)
+.. .++..|+.
T Consensus 227 ~~~~~~~~~~~~~~ 240 (279)
T PRK13650 227 LFSRGNDLLQLGLD 240 (279)
T ss_pred HHcChHHHHHcCCC
Confidence 753 23444554
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-43 Score=362.10 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChh
Confidence 7899999998 24579999999999999999999999999999999999643 468999999998742 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+||+||+.+....+ .....+..+.+.++++.+||.+..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999999888899999998865432 123444556788999999998766654 45899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. + ..||++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999985 58999999999764 4 4599999999999999999887754
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-44 Score=365.24 Aligned_cols=218 Identities=27% Similarity=0.526 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+||+||+.+...... ....++.+.+++++++.+|+.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 235779999999999988999999988643221 12334455678899999999765554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999974 57789999999999999999999876
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
No 100
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.1e-44 Score=367.02 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 468999999987631
Q ss_pred --------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-cccccC
Q 006330 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (650)
Q Consensus 226 --------------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (650)
.+++.++||+|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 346789999999999998999999987542111 123445567788999999997643 33
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. ++..+||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35689999999999999999999999999999999999999999999999877999999999975 4667899999999
Q ss_pred CCeEEEecCHHHHH
Q 006330 371 KGSLLYFGKASEAM 384 (650)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (650)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
No 101
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.05 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 58999999998311 112579999999999999999999999999999999999653 468999999998742
Q ss_pred ----hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999875432 123344556788999999998765543 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999754 4 4468999999999998876
Q ss_pred H
Q 006330 380 A 380 (650)
Q Consensus 380 ~ 380 (650)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
No 102
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.9e-44 Score=359.82 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcceEEEECCEeCCh-h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-~ 226 (650)
.++|+||+++|+.. +..+++|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998321 1146899999999999999999999999999999999996531 0468999999998753 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH-HHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.++.++|++|++.+++.+||+||+.++.....+.....+...+++++ .++.+++.+..++ .++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 57789999999999999999999998765432221222233334555 7888888765554 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999755688999999999999999875
No 103
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=389.68 Aligned_cols=223 Identities=32% Similarity=0.515 Sum_probs=192.8
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (650)
...|+|+||+|.|. ++|++|+||||++.||+.+||+||||+||||++++|- |+++. .+|.|.+||+|++.
T Consensus 535 ~G~i~fsnvtF~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNV 605 (790)
T ss_pred CCeEEEEEeEEecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHH
Confidence 34799999999993 5789999999999999999999999999999999999 67764 48999999999863
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+|+.||.||||..||.+ |+..||.|+......+.+..+.+.+.+++-+ ++++++++|++|.++.+ |||||||
T Consensus 606 t~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERGLk-LSGGEKQ 681 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLK-LSGGEKQ 681 (790)
T ss_pred HHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccc-cCCcchh
Confidence 689999999999999975 9999999974322111222222333444433 67899999999998776 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
||+|||+++++|.|++|||.||+||..+++.|...|.++++ ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHH
Confidence 99999999999999999999999999999999999999986 8999999999986 35699999999999999999999
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
++.
T Consensus 759 Ll~ 761 (790)
T KOG0056|consen 759 LLK 761 (790)
T ss_pred HHh
Confidence 975
No 104
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.4e-44 Score=384.00 Aligned_cols=207 Identities=26% Similarity=0.460 Sum_probs=183.3
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc----cCcEEEEccCCc
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yV~Q~~~ 239 (650)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .+ ++.|+||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 35679999999999999999999999999999999998543 568999999999753 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 006330 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (650)
Q Consensus 240 l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 319 (650)
+|+++||+||+.|+.... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456677789999999999876665 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|++++.|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999965 5788999999999999999999998753
No 105
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.1e-44 Score=357.94 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|. +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 78999999882 23579999999999999999999999999999999999643 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.++|++|++.+++.+||+||+.+....+ .......++++.++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999998899999999875432 123344556788999999998655544 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999877999999999975 5777899999999985
No 106
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=374.36 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++||+++|..+. .....+|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 389999999983210 112469999999999999999999999999999999999653 46899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc
Q 006330 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (650)
Q Consensus 225 ------------------------~~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (650)
..+++.||||+|++ .++ ..||+|||.|+.... ..+.++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677889999999
Q ss_pred CCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 006330 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (650)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~ 357 (650)
||. +..++ .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++.|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 44554 45789999999999999999999999999999999999999999999999877999999999965
Q ss_pred HHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 358 ~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
.+.+.||||++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 477899999999999999999998875
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=363.83 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 58999999998 2357999999999999999999999999999999999965421 358999999998742
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
.+++.|+|++|++.+++.+||+||+.++...+.. .....+..+.+.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 4567899999999888889999999987542211 112344456788999999986421111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++. ++.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999975 467889999999999999999998
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
No 108
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.7e-44 Score=363.08 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC---C-CccHHHHHHHHHHHHHHcCCCc-cccccccCccCC-CCCH
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (650)
. .+..++||+|++.+++.+|++||+.+....... . .....+..+++.++++.+||++ ..++. +. .|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999886532110 0 1122334567889999999973 44433 33 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh-cCEEEEEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~-~D~iivL~~G~iv~~ 377 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 46666 899999999999999
Q ss_pred cCHHHH
Q 006330 378 GKASEA 383 (650)
Q Consensus 378 G~~~~~ 383 (650)
|++++.
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
No 109
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.9e-45 Score=420.50 Aligned_cols=353 Identities=24% Similarity=0.336 Sum_probs=244.4
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchh
Q 006330 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (650)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (650)
+.++..++...+..+...+.....+++|+++.+....+++.+.......-..+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888899999999999999999998888888766553332221110000000000111111223334467
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006330 89 AALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (650)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (650)
+.++..+..+.|.+..+..+.. |...+.. .+.....+.++..+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 7777667777776655543221 1111110 01111111111100000 0000 00111235999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hcc
Q 006330 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (650)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (650)
+||+|+|+. ..++++|+|+|++++|||.++|+||||||||||+|+|+|.. + +.+|+|.+||.++++ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-D-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999832 12367999999999999999999999999999999999954 3 458999999998753 567
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGer 301 (650)
++|+|+||++.+|+. |++|||.++. + ..+++ ++.+.++..| ++++.||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGR----P-DATDE----EVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 889999999999975 9999998753 1 12222 2333444333 356678888765 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||++. ....||+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999975 45789999999999999999999
Q ss_pred HHHH
Q 006330 382 EAMA 385 (650)
Q Consensus 382 ~~~~ 385 (650)
++.+
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8754
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-43 Score=379.04 Aligned_cols=228 Identities=24% Similarity=0.424 Sum_probs=191.5
Q ss_pred eeEEEEeEEEEEeeccc-----cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe
Q 006330 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 222 (650)
+.|+++||++.|..+.. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999843110 00123579999999999999999999999999999999999653 468999999998
Q ss_pred CCh-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006330 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (650)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (650)
+.. .++++|+||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||.+ ..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 588899999999987543211 2355666778889999999953 333 45
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6799999999999999999999999999999999999999999999999865 899999999975 46778999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
No 111
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-44 Score=363.10 Aligned_cols=215 Identities=24% Similarity=0.431 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +.+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCH
Confidence 59999999998 24579999999999999999999999999999999999643 468999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+|+.+||+||+.++.... ...+..+.+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864321 1222334566777777 46544443 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999965 5778999999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
No 112
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=370.80 Aligned_cols=218 Identities=29% Similarity=0.528 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++||+++|. .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 23569999999999999999999999999999999999643 56899999999873
Q ss_pred --hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 225 --KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 225 --~~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..+++.++|++|++ .++ ..||+||+.++.... ..+..+..++++++++.+||.+..++. ++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 13567899999997 344 479999999865422 234455556788999999998766654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999975 4667899999999999999999
Q ss_pred HHHHHH
Q 006330 380 ASEAMA 385 (650)
Q Consensus 380 ~~~~~~ 385 (650)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 998754
No 113
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=364.62 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (650)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|+++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 369999999998 2356999999999999999999999999999999999965421 24899999999863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccCC
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (650)
...++.|+|++|++.+++ +||+||+.++..... .......++++.+.++.+++. +..++ .+.
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134678999999998885 899999998754321 112334456678888888873 23343 357
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||+|++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 799999999975 46788999999999999
Q ss_pred EEecCHHHHH
Q 006330 375 LYFGKASEAM 384 (650)
Q Consensus 375 v~~G~~~~~~ 384 (650)
++.|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 114
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.9e-45 Score=421.04 Aligned_cols=354 Identities=21% Similarity=0.258 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhh
Q 006330 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (650)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (650)
.+..++..++..+...|...+.+|+++|+.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777888999999999999999988888887766554333221100000000000000111112233457777
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccCC--CCCCCCCCCCCeeEEEEeEEEE
Q 006330 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRE--RPKFQTEPTLPIYLKFTDVTYK 158 (650)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~nvs~~ 158 (650)
++..|..+.|.+.++..+.. |...+..... ....++.+..+..+.. .......+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 77777777777666553221 2111111000 0000000001000000 0000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEE
Q 006330 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (650)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV 234 (650)
|+ +++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-D-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-C-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 83 2246899999999999999999999999999999999854 3 468999999998753 568899999
Q ss_pred ccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
+|++.+|+ .|++|||.++. + ..++++..+. +++.+. .++++.||.+|.. ...||||||||++||||
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999996 59999998863 1 1233332222 222332 3466778888764 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999885 48999999999853 46799999999999999999999864
No 115
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=362.18 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 48899999998 24579999999999999999999999999999999999643 46899999999762
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
...++.|+|++|++.+++.+||+||+.+.. ... .....+..+++.++++.+|+++..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 134678999999999999999999997532 211 123344456788999999997666654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999999999999
Q ss_pred cCHHHH
Q 006330 378 GKASEA 383 (650)
Q Consensus 378 G~~~~~ 383 (650)
|++++.
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=371.58 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48999999998311 0112569999999999999999999999999999999999543 468999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
.+++.||||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++ .+..||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 5665 59999999875432 234555667789999999996 45554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999975 4678899999999999999
Q ss_pred ecCHHHHHH
Q 006330 377 FGKASEAMA 385 (650)
Q Consensus 377 ~G~~~~~~~ 385 (650)
.|+++++..
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988753
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-44 Score=357.53 Aligned_cols=208 Identities=30% Similarity=0.574 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++||+++| +++++|+|+||++++| +++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2347999999999999 999999999999999999999653 468999999987642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 5678999999999999899999999865432 123334456788899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999986 589999999975 466789999999999998765
No 118
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-43 Score=365.02 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 23579999999999999999999999999999999999653 468999999987631
Q ss_pred -------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006330 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (650)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (650)
.+++.++|++|++.+++.+||.||+.++.... ......+..+.+.++++.+|+.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM----- 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----
Confidence 34678999999999999899999999864211 1123444556788999999997665543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999865 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=363.91 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcceEEEECCEeC
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~ 223 (650)
|+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 23569999999999999999999999999999999999642 12 3689999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
.. .+++.++|++|++.+|+ .||+||+.++...+. ....+...+++.++++.+++.+...... +..+..||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999988 599999998754321 1123344567888899998854222111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=365.13 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (650)
+.|+++|+++.| +++++|+|+||+|++||++||+||||||||||+++|+|.... ++++|+|.++|+++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 369999999988 245699999999999999999999999999999999996532 136899999998863
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. ..++.++|++|++.+++ +||+||+.++.... ..+.+...+++.++++.+++.+...... +..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCH
Confidence 2 34677999999999888 89999999875432 1233444566888999998842211111 233568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 799999999975 467889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998863
No 121
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8.1e-44 Score=356.84 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|. +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999982 12579999999999999999999999999999999999643 468999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+++.+||+||+.++...+ ....++..+++.++++.+||++..++. +..|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24678999999999999899999999875432 123444556788999999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999877999999999975 46678999999999974
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=371.02 Aligned_cols=221 Identities=27% Similarity=0.436 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|..+ ....+.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 47899999998210 0012579999999999999999999999999999999999653 568999999998632
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
..++.|+|++|++ .++ .+||.||+.++.... ....++..+++.++++.+||. +..++. ++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCC
Confidence 2456799999997 456 579999999875432 234455566789999999996 445543 56899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 57789999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
No 123
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-43 Score=376.32 Aligned_cols=228 Identities=25% Similarity=0.425 Sum_probs=191.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cceEEEECCEeCCh
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~ 225 (650)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 123579999999999999999999999999999999999653 32 48999999998742
Q ss_pred ----h---cc-CcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 226 ----~---~~-~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
+ +| +.|+||+|++ .++|.+|+.+++.+...... ..+..+..+++.++++.+||++..+. .+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 2 22 4799999998 68899999999987654321 23455666788999999999764322 2356789
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999976 46678999999999999
Q ss_pred EEecCHHHHHH
Q 006330 375 LYFGKASEAMA 385 (650)
Q Consensus 375 v~~G~~~~~~~ 385 (650)
++.|+++++..
T Consensus 241 ve~g~~~~i~~ 251 (330)
T PRK09473 241 MEYGNARDVFY 251 (330)
T ss_pred EEECCHHHHHh
Confidence 99999998853
No 124
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=394.34 Aligned_cols=216 Identities=32% Similarity=0.533 Sum_probs=184.2
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC--
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (650)
+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|... +++|+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCCC
Q 006330 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (650)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (650)
..+|++++||+|+|.+|+. |++|||.++.. ..++++ +.++++..|| +++.|+.+|+.+ ++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~G-~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEGG-AGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccCC-CCC
Confidence 3689999999999999986 99999998632 123333 3333333332 567889998654 679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|||++||++.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 6999999999764 57799999999999999
Q ss_pred ecCHHHHHH
Q 006330 377 FGKASEAMA 385 (650)
Q Consensus 377 ~G~~~~~~~ 385 (650)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=368.10 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 589999999982 123569999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.|+|++|++. ++..+||+|||.++.... ....++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566689999999875432 234455567789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 8999999999764 54 599999999999999999988
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
No 126
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=375.63 Aligned_cols=227 Identities=26% Similarity=0.380 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcceEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (650)
.|+++||++.|..+ .+...+|+||||+|++||++||+||||||||||+++|+|.+..+ +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12256999999999999999999999999999999999965421 368999999998742
Q ss_pred ---hc----cCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 ---SL----KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ---~~----~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
.+ ++.|+||+|++ .++|.+||.+++........ ....++.++++.++++.+||.+..+ ..+.++.+|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 11 24699999998 47889999999876654321 1345566778999999999975221 123456899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++||++. .+.++||+|++|++|+++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4899999999976 467889999999999999
Q ss_pred EecCHHHHH
Q 006330 376 YFGKASEAM 384 (650)
Q Consensus 376 ~~G~~~~~~ 384 (650)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999999875
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=366.08 Aligned_cols=216 Identities=22% Similarity=0.432 Sum_probs=184.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC-----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----- 224 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----- 224 (650)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 2 LATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred eEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCC
Confidence 7899999998 24579999999999999999999999999999999999653 56899999999873
Q ss_pred -hhccCcEEEEccCCcC-CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 225 -KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 225 -~~~~~~i~yV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
...++.|+||+|++.+ +...|+.||+.+..... ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKK 143 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHH
Confidence 1345779999999752 33458999998865432 123444456788899999997766553 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877899999999975 4678899999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 223 ~~ 224 (271)
T PRK13638 223 VF 224 (271)
T ss_pred Hh
Confidence 64
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=362.12 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2356999999999999999999999999999999999965321 25899999999874
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..+++.++|++|++.+++.+||+||+.++...+.. ....++..+++.++++.+|+.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 13467899999999999999999999987543210 012334455678889998885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 699999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98864
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.9e-43 Score=357.39 Aligned_cols=215 Identities=28% Similarity=0.459 Sum_probs=175.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|..+ ....++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchh
Confidence 7899999998311 011369999999999999999999999999999999999643 468999999998742
Q ss_pred ---hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-HHHHHHHcCCC-ccccccccCccCCCCCH
Q 006330 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (650)
..++.++|++|++ .+++.+||+||+.+......+ ....+..+. +.++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3467899999998 467789999999887543211 111222222 35788999985 34443 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 006330 378 G 378 (650)
Q Consensus 378 G 378 (650)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
No 130
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=394.19 Aligned_cols=359 Identities=26% Similarity=0.335 Sum_probs=271.0
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhhHhhh
Q 006330 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (650)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (650)
+|.....+..++-+.-+.|+|+|-+-.+...++..+.-...++..+.-.-..|.+.-.|+.+-+.+|..-+-.|+-|+-.
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 45555555566666666789988888888888887666555554443333344444457888888888888899999999
Q ss_pred hhhhhhhhhccccC---CC-CccccccC-CC-----CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEeeccc
Q 006330 95 SSASLGLSFSFTGF---TM-PPDEIADS-KP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164 (650)
Q Consensus 95 ~~~~~g~~~~~~~~---~~-~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~~~~ 164 (650)
+.++.|++..=+-+ .+ |.+...+. +. .++..+.+-++..+...+. +..|.....|.++++++.
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~------ 343 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAA------ 343 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeec------
Confidence 98888887654321 11 22211111 00 1222233333333322222 234444457999999983
Q ss_pred cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEccCCcC
Q 006330 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVL 240 (650)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l 240 (650)
+++.++++|+|+||++.+||.+||+||||||||||.|+|.|.. ++.+|.|.+||.++++ .+-++|||+|||-.|
T Consensus 344 PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 344 PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 3556789999999999999999999999999999999999954 3568999999998863 466889999999999
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 006330 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (650)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 320 (650)
|+. ||.|||.=....-.++.+-++.+.+.++|++- .+++++||.+|+.+ ..||||||||+++||||..||.+++||
T Consensus 422 F~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLD 497 (580)
T COG4618 422 FDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLD 497 (580)
T ss_pred cCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEec
Confidence 986 99999973221111111223445566888874 56999999999765 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHH
Q 006330 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (650)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~ 388 (650)
||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 498 EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 498 EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999999999999999999999999999999999987 578899999999999999999999988654
No 131
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=368.97 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=184.3
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----h
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (650)
.++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 456777766 45679999999999999999999999999999999999653 468999999998742 1
Q ss_pred ----ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 227 ----~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++. +..|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998899999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 477889999999999999999998
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 864
No 132
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.4e-43 Score=359.23 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 48999999998 23579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC--C---CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
..++.++|++|++.+++.+||+||+.++...... . ....++.+++++++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245799999999999999999999986432100 0 011234456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||+|++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999965 577889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
No 133
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=363.46 Aligned_cols=212 Identities=31% Similarity=0.477 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ...
T Consensus 2 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~~ 70 (255)
T PRK11248 2 LQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PGA 70 (255)
T ss_pred EEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CCC
Confidence 7899999998 23579999999999999999999999999999999999653 468999999998753 345
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++|++|++.+++.+||+||+.++...+ .....+..+++.++++.+||.+..++. +..||||||||++|||+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~lara 142 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARA 142 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 6999999999998899999999865432 123444556788999999998665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEe--CCeEEEecCHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~--~G~iv~~G~~~ 381 (650)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|+ +|++++.++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999999864 5899999999975 5778999999998 59999988653
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.5e-43 Score=354.73 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=177.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4789999998 23579999999999999999999999999999999999653 468999999998731
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+|++||+.++..... ....++..+++.++++.+|+.+..++. +..||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999988999999998643111 123344556788899999997765554 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+.||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999974
No 135
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-43 Score=360.60 Aligned_cols=223 Identities=22% Similarity=0.406 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~--~~~-~~~G~I~~~G~~~~ 224 (650)
+.|+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|+++.
T Consensus 2 ~~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 368999999998 2457999999999999999999999999999999999852 222 24899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. ..++.++|++|++.+++ .||+||+.++...+. ....+...+.++++++.+||.+...... +..+..|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 149 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSG 149 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCH
Confidence 2 34677999999999887 599999998754321 1122334566788999999865322211 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 4799999999976 467889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14245 228 DTKKIF 233 (250)
T ss_pred CHHHHh
Confidence 999874
No 136
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-43 Score=354.21 Aligned_cols=202 Identities=29% Similarity=0.506 Sum_probs=171.9
Q ss_pred EEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-hcc
Q 006330 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~ 228 (650)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 368999988 23 579999999999999999999999999999999999643 568999999998753 345
Q ss_pred CcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 229 ~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
+.++|++|++. .+..+||+||+.++.... . ...+++.++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 68999999974 233579999998865321 1 1124678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999877999999999975 466789999999999975
No 137
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=365.97 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|..+ ....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 37899999998311 0012469999999999999999999999999999999999653 468999999998642
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (650)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+. .+..||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3467799999997 4665 69999999875432 1234445567888999999963 3443 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
No 138
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=363.74 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48899999998 24579999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.++|++|++.+++.+||+||+.++.... ....++..+++.++++.+||.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998666654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 305 ~IA~aL~------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
+|||||+ .+|++|+|||||+|||+.++..+.+.|++++ +.|+|||++||++. .+.+.||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 56899999999975 46779999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
No 139
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.4e-43 Score=355.40 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|.. ..+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 689999999831 1112579999999999999999999999999999999999653 468999999998742
Q ss_pred h---cc-CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ~---~~-~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122334456788999999998665543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|+|++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999864 899999999976 34 558999999999985
No 140
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.9e-43 Score=355.30 Aligned_cols=208 Identities=27% Similarity=0.480 Sum_probs=178.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChh
Confidence 78999999982 23579999999999999999999999999999999999643 568999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.++|++|++.+++.+||+||+.+....+ ....++..+++.++++.+++.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHH
Confidence 24678999999999888899999999875432 123444456678899999998655543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++. ++...||+|++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999975 467789999999999985
No 141
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=366.99 Aligned_cols=216 Identities=26% Similarity=0.455 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 2 IRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred EEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccH
Confidence 78999999982 23569999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++. .+...||.||+.+..... ..+..+..+++.++++.+||.+..++. +..||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQC 144 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHH
Confidence 34678999999975 355679999999875432 234455566788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||+|++|++|++++.|+++++
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998779999999999764 5 56999999999999999999886
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 223 ~ 223 (274)
T PRK13644 223 L 223 (274)
T ss_pred h
Confidence 4
No 142
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-44 Score=355.28 Aligned_cols=220 Identities=27% Similarity=0.484 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++.+||+.++ +.-.+++||||++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCH
Confidence 58899999988 56789999999999999999999999999999999999653 468999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccC--------CC-CccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (650)
..+..|+--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~----- 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG----- 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----
Confidence 236678999999999999999999998865331 11 11345667789999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||+. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999974 799999999976 5899999999999999
Q ss_pred EEEecCHHHHH
Q 006330 374 LLYFGKASEAM 384 (650)
Q Consensus 374 iv~~G~~~~~~ 384 (650)
++..|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999975
No 143
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=361.26 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999643 568999999998742
Q ss_pred -h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC----------CCc--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 006330 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (650)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (650)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 2 244699999999999999999999986431110 000 1122345678889999997665544
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 899999999975 5778899999999
Q ss_pred CCeEEEecCHHHHH
Q 006330 371 KGSLLYFGKASEAM 384 (650)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (650)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
No 144
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-43 Score=373.55 Aligned_cols=227 Identities=26% Similarity=0.431 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccc--cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (650)
.|+++||++.|..+.. ...+.+.+|+||||+|++||++||+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999843210 00113579999999999999999999999999999999999653 468999999998742
Q ss_pred ------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 006330 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (650)
.++++|+||+|++ .+++.+||.+++........ .....+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 58899999999987654321 2345566778999999999963 344 356799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||||||+|||||+.+|++||+||||++||+.++.++++.|+++.++ |.|+|++||++. .+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999864 999999999975 466789999999999999
Q ss_pred EecCHHHHHH
Q 006330 376 YFGKASEAMA 385 (650)
Q Consensus 376 ~~G~~~~~~~ 385 (650)
+.|+++++++
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999998853
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=374.46 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcceEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (650)
.|+++||+++|..+ .+.+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998432 13457999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006330 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (650)
Q Consensus 226 ---~----~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (650)
. .++.|+||+|++. +++.+||.+++.+......... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 012344567889999999975321 123456
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+||||+. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999999874 899999999975 477899999999999
Q ss_pred eEEEecCHHHHH
Q 006330 373 SLLYFGKASEAM 384 (650)
Q Consensus 373 ~iv~~G~~~~~~ 384 (650)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 146
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-43 Score=362.65 Aligned_cols=218 Identities=24% Similarity=0.433 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++|. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++. +++..|+++|+.+..... ....+...+++.++++.+++.+..++. +..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 45678999999984 677789999998875432 123444556788899999998766643 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .||+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999764 54 499999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
No 147
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=363.40 Aligned_cols=221 Identities=27% Similarity=0.484 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (650)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 69999999998 3467999999999999999999999999999999999965321 236999999988632
Q ss_pred -------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006330 226 -------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (650)
Q Consensus 226 -------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (650)
..++.++|++|++.+++.+||+||+.++.....+. ....++.+.++.++++.+||.+..++. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 23567999999999999899999998764211000 011233456788999999998766654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999864 899999999975 467899999999999
Q ss_pred eEEEecCHHHH
Q 006330 373 SLLYFGKASEA 383 (650)
Q Consensus 373 ~iv~~G~~~~~ 383 (650)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999998764
No 148
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=361.76 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=186.0
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeC
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~ 223 (650)
...|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3469999999998 235699999999999999999999999999999999996531 2 3689999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
.. .++++|+|++|++.+++ .||+||+.++..... ..+.++..+++.++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999887 799999998754221 1334445567889999998853211111 23456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
No 149
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=359.37 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-- 225 (650)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+|+ .||+||+.++...+.. ........+++.++++.++|.+...... +..+..||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 35678999999999997 6999999987533210 0012334556788999999953221111 23456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999999886
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
No 150
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=365.30 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++++||+++|. +.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 489999999982 13469999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++||+|++. ++ ..||.||+.++.... ....+...++++++++.+||.+..++. +..|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 45678999999973 45 579999998865422 234455566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999975 577899999999999999999999
Q ss_pred HHHH
Q 006330 382 EAMA 385 (650)
Q Consensus 382 ~~~~ 385 (650)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 151
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-43 Score=381.22 Aligned_cols=203 Identities=26% Similarity=0.454 Sum_probs=178.2
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----h----ccCcEEEEccCCcCCC
Q 006330 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLFP 242 (650)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yV~Q~~~l~~ 242 (650)
.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. . .++.++||+|++.+|+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 48999999999999999999999999999999999653 468999999998742 1 1357999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 006330 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (650)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 322 (650)
.+||+||+.++...+ ....++..+++.++++.+||.+..++. +..|||||||||+|||||+.+|++||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999986543 133445567788999999998766653 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999975 4899999999975 577899999999999999999998875
No 152
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=363.42 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. .++
T Consensus 12 ~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~~ 80 (257)
T PRK11247 12 PLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EAR 80 (257)
T ss_pred cEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hhh
Confidence 59999999998 34579999999999999999999999999999999999653 46899999998763 456
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
+.++|++|++.+++.+||+||+.++.. . ...+++.++++.+||.+..+.. +..||||||||++|||
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~---~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~lar 146 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLK---G------QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALAR 146 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhccc---c------hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 789999999999988999999987521 0 1235678899999998765543 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+.||+|++|++|++++.|+.+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999865 4899999999975 467889999999999999887653
No 153
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=348.55 Aligned_cols=216 Identities=26% Similarity=0.460 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+..| +..++|++|||++++||+++|+||||||||||||+|+|... +.+|+|.++|+|++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 58999999988 46789999999999999999999999999999999999653 458999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGerq 302 (650)
..|..|+||||...+|+.|||+|||..++..+.. ++......+++.+.|- |.+..+.+- ..|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHH
Confidence 3577899999999999999999999998754321 1111222566666662 444445443 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. .+.+.+||.+||.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988854 578899999999999999999999
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 985
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=362.89 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 48999999998 34579999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+||.||+.++...... .........+++.++++.+||.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999885321000 0111223455678899999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877899999999975 57789999999999999999998876
Q ss_pred H
Q 006330 384 M 384 (650)
Q Consensus 384 ~ 384 (650)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 4
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.8e-43 Score=363.43 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.|+++||+++|...+ ....+++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 489999999983210 000124679999999999999999999999999999999999643 468999999998742
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
.+++.|+||+|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1456799999997 4677899999998764321 1123334556788999999995 44454 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998875
No 156
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-44 Score=351.96 Aligned_cols=221 Identities=29% Similarity=0.543 Sum_probs=205.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|++++|+.+| +++.+++|+||+++||++++++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 48999999988 67889999999999999999999999999999999999654 568999999999998889
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
.+|||+|.+.-|++.+||.|.|.|.+.++ .+++++.++++..+|+.+++......+ +.+||.|++|++.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 478889999999999999998766544 5789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHH
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~ 388 (650)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999965 6899999999999999999999999987554
No 157
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-43 Score=358.59 Aligned_cols=223 Identities=22% Similarity=0.401 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 245699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 346789999999999998999999987654221 1223344566888999999864221111 1245789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4678999999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 98864
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=362.36 Aligned_cols=216 Identities=31% Similarity=0.547 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccch
Confidence 78999999982 13469999999999999999999999999999999999653 468999999998731
Q ss_pred --hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..++.|+|++|++ .+++ .||.||+.++.... ....++..+++.++++.+||.+..++. +..||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999997 3554 69999998864321 233445566788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999965 467789999999999999999999
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 223 ~~~ 225 (275)
T PRK13639 223 EVF 225 (275)
T ss_pred HHh
Confidence 875
No 159
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.3e-43 Score=356.63 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+|+.+|++||+.++..... .. ..+.++++++.++ +.+..++ .+..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999999999999998754321 11 1233466676665 4444443 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 5777899999999999999999887
Q ss_pred H
Q 006330 383 A 383 (650)
Q Consensus 383 ~ 383 (650)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=363.94 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|++++|. .+++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999982 124579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.++|++|++. .++.+||+||+.++.... ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 45678999999974 566789999999875422 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999866 5899999999864 4 479999999999999999988
Q ss_pred HHH
Q 006330 382 EAM 384 (650)
Q Consensus 382 ~~~ 384 (650)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-43 Score=362.35 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|+++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+++. ||.||+.++...+.. .....+..+++.++++.+||.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346789999999998875 999999987543211 0123334567888999999964221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88864
No 162
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-43 Score=354.89 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.5
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCc
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~ 230 (650)
+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 368899988 23569999999999999999999999999999999999653 46899999998764 45678
Q ss_pred EEEEccCCcCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 231 i~yV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++||+|++.++ ..+||+||+.++...... .....+...++++++++.+++++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999986432110 0011223456788899999997655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999975 477889999999886 66654
No 163
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=363.90 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ceEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~- 225 (650)
.|+++|+++.|. ...+++|+||||+|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|.++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..+++||||+|++. +++.+||.||+.|..... ..+.++..+++.++++.+||.+..++. ++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHH
Confidence 34678999999974 566789999999865322 234556667889999999998766543 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999865 8999999999764 4 57999999999999999999
Q ss_pred HHHHH
Q 006330 381 SEAMA 385 (650)
Q Consensus 381 ~~~~~ 385 (650)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
No 164
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.1e-45 Score=447.94 Aligned_cols=347 Identities=21% Similarity=0.269 Sum_probs=234.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhh
Q 006330 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (650)
..+..++..++..+.++|++++.+||++|+++..+.++|.+.+......+.+.....+.+............+..+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566678899999999999999999999999999997666655443332222222111111111122334456777
Q ss_pred hHhhhhh----------------hhhhhhhccccC--------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCC
Q 006330 90 ALSRASS----------------ASLGLSFSFTGF--------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (650)
Q Consensus 90 ~~~~~~~----------------~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (650)
.++..+. ...|.+.++..+ ....+..+..+.++..+.++.++.... .. ..+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~--~~--~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD--GK--KLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--Cc--cCCC
Confidence 7766541 122222211110 011112222222222222211111000 00 0111
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEE-CCEeCC
Q 006330 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~-~G~~~~ 224 (650)
. ..|+++||+|+|+. ++++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchh
Confidence 1 26999999999831 1235799999999999999999999999999999999984 44 45899999 567764
Q ss_pred ----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC----------CC-----------------------------C
Q 006330 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (650)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~----------~~-----------------------------~ 261 (650)
+.+|++||||+|++.+|+. ||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 2468889999999999975 99999999742100 00 0
Q ss_pred c---------cHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006330 262 L---------TKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (650)
Q Consensus 262 ~---------~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (650)
. .....++.+.++++.+ .|++++||.+|.. ...||||||||++|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 0001123455555544 4567788988865 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
||+.++..+.+.|+++.+ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4789999999986
No 165
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=363.90 Aligned_cols=223 Identities=23% Similarity=0.410 Sum_probs=187.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+++|.... +...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccc
Confidence 3699999999983210 0113579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 ---SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..++.++||+|++. ++ ..||.||+.|+.... ..+..+.+++++++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 149 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQ 149 (280)
T ss_pred cHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHH
Confidence 34678999999974 45 469999999875432 234455567789999999998776654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. .||++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGT 227 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 9999999999764 54 499999999999999999
Q ss_pred HHHHHH
Q 006330 380 ASEAMA 385 (650)
Q Consensus 380 ~~~~~~ 385 (650)
++++..
T Consensus 228 ~~~~~~ 233 (280)
T PRK13633 228 PKEIFK 233 (280)
T ss_pred HHHHhc
Confidence 998753
No 166
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=359.57 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996532 22 58999999998741
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++|++|++.+++. ||+||+.+...... ....++..++++++++.+++.+...... +..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346789999999999875 99999998753321 1123444566788899988854211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999975 789999999975 5778999999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
No 167
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=363.11 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCH
Confidence 69999999998 24579999999999999999999999999999999999543 468999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
.+++.++|++|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 34677999999988888899999998753211000 011123345688899999997655654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999975 5778999999999999999999887
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 63
No 168
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=359.45 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235799999999999999999999999999999999996542 1 25899999999863
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..+++.++|++|++.+++.+||+||+.++...+. ....++.++++.++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999998999999998764321 1123445567888899998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe------CCe
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~------~G~ 373 (650)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||+|++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 689999999975 4678999999997 799
Q ss_pred EEEecCHHHHH
Q 006330 374 LLYFGKASEAM 384 (650)
Q Consensus 374 iv~~G~~~~~~ 384 (650)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=360.49 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=187.6
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeC
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~ 223 (650)
...|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3479999999998 346799999999999999999999999999999999996542 14689999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
.. ..++.|+||+|++.+|+ .||+||+.++.... . ...+++.++++.++++.++|.+..+... +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 34678999999998887 59999999875422 1 1233445567888999999864322222 24467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.+.||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 47789999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998874
No 170
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.9e-43 Score=352.83 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=181.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4789999988 24579999999999999999999999999999999999653 5689999999987543345
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++|++|++.+++.+|++||+.+....+. .. ..++.++++.+||.+..+.. +..||||||||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 23577889999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++.+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877899999999975 4678899999999999999998753
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-43 Score=351.10 Aligned_cols=206 Identities=30% Similarity=0.539 Sum_probs=173.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----h
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (650)
+++|++++|. +.++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3689999882 112579999999999999999999999999999999999653 468999999998742 3
Q ss_pred ccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 227 ~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.++.|+|++|++. .++.+||+||+.++.... ........+++.++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4678999999974 355689999998865432 123344456788899999997655543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++...||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 5677899999999985
No 172
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=362.88 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCH
Confidence 69999999998 24579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+||+||+.++.....+. ....+...+++.++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHH
Confidence 34567999999999998899999998753111000 00112344568889999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.++||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 5788999999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 65
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.9e-43 Score=355.55 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++|++++| +++++|+|+|+++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998753 33
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+|+.+|++||+.+....+ ........+.+.++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122334456778999999997666654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999875 899999999975 467889999999999999999988874
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.5e-43 Score=360.46 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 34579999999999999999999999999999999999653 468999999998743
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998777788999999885321000 0011123345788899999997665554 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+.+|+++||||||+|||+.+...+.+.|++++++|.|||+++|++. .+.+.||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 467899999999999999999988763
No 175
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=357.07 Aligned_cols=222 Identities=28% Similarity=0.438 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--cceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 24579999999999999999999999999999999999642 231 48999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++||+|++.+|+ +||+||+.++...+. ........+++.++++.+++.+..... .+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34678999999999987 799999998754321 112233456677888888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 5778899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 176
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-44 Score=386.47 Aligned_cols=215 Identities=31% Similarity=0.544 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++++||+|+|+ +.+.++|+|+||++++||.+||+|+||||||||+++|.|. ++ +.+|+|.+||.++..
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999994 3455799999999999999999999999999999999985 44 458999999998752
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCC
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (650)
.+++.|++++|...+|.+ |+++||.++.. + .++++ +.++++..|| +++.||.+|+.+ +.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~----~-AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G-~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP----D-ASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC----C-CCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC-CcCC
Confidence 478899999999999975 99999998742 1 23333 4444554444 456778887654 6799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+.++ |+|+|++||++.. .+.||||++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998775 9999999999875 588999999999999999
Q ss_pred cCHHHHHH
Q 006330 378 GKASEAMA 385 (650)
Q Consensus 378 G~~~~~~~ 385 (650)
|+|.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
No 177
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-43 Score=361.31 Aligned_cols=226 Identities=26% Similarity=0.450 Sum_probs=193.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCC--
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~-- 224 (650)
|+++|++..|... .+..++++||||++++||++||+|.|||||||+.+.|+|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999998532 23467999999999999999999999999999999999977533 26799999999763
Q ss_pred -h----hc-cCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 225 -~----~~-~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
+ .+ .+.|+||||++ .|.|.+||.+.+.-...... .. .+++..+++.++|+.+||++-. .+.+.++.+
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPE--RRLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcc
Confidence 2 22 35799999997 58899999999987665422 12 3566788899999999998632 234578899
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||+.|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999976 48899999999999999
Q ss_pred EEecCHHHHH
Q 006330 375 LYFGKASEAM 384 (650)
Q Consensus 375 v~~G~~~~~~ 384 (650)
|+.|+.++++
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
No 178
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.4e-45 Score=411.68 Aligned_cols=333 Identities=23% Similarity=0.267 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhh
Q 006330 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (650)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (650)
.++.+++.++..+...|.....+++|+|+.+..+.++|.+..........+.................-..+.-+..|+.
T Consensus 172 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (529)
T TIGR02857 172 ARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGF 251 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777788889999999999999999999988865554333211100000000000000011111111223444
Q ss_pred HhhhhhhhhhhhhccccCC----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEe
Q 006330 91 LSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (650)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 154 (650)
.+..|..+.|.++.+..+. .|...+ +..+.....+.++ ...+.....+.....|+++|
T Consensus 252 ~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~------~~~~~~~~~~~~~~~i~~~~ 325 (529)
T TIGR02857 252 RLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR------PLAGKAPVTAAPAPSLEFSG 325 (529)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ccCCCcCCCCCCCCeEEEEE
Confidence 4445556666655554321 111111 1111111111110 00000000011113699999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----hhccCc
Q 006330 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (650)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~ 230 (650)
|+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++. +.+|++
T Consensus 326 v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 326 LSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred EEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHhh
Confidence 999983 1235799999999999999999999999999999999985 44 45899999999875 357889
Q ss_pred EEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 231 i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
++||+|++.+|+. |++|||.++.. ..++++.. ..+++.++. ++++.||.+|+.. ..||||||||++
T Consensus 398 i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~Gldt~v~e~g-~~LSgGq~qri~ 468 (529)
T TIGR02857 398 IAWVPQHPFLFAG-TIAENIRLARP-----DASDAEIRRALERAGLDEFVAA--LPQGLDTLIGEGG-AGLSGGQAQRLA 468 (529)
T ss_pred eEEEcCCCcccCc-CHHHHHhccCC-----CCCHHHHHHHHHHcCcHHHHHh--Ccccccchhcccc-ccCCHHHHHHHH
Confidence 9999999999974 99999998632 12222211 122333433 3667899988643 569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999999875 58999999999853 5789999985
No 179
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-44 Score=449.12 Aligned_cols=217 Identities=24% Similarity=0.370 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+|+||+|+|. ++.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||+|+++
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 3699999999993 123579999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.+|++|++||||+.+|+. ||||||.++. ..++++. ...+++.++. ++++.||.+|+.+ ..|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~--lp~GLdt~Vge~G-~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRR--NSLGLDAEVSEAG-ENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHh--CccccCccccCCC-CCCCH
Confidence 679999999999999976 9999998642 1233222 2223344443 4678899998654 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+|+|++++ ...||||+||++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4669999999999999999
Q ss_pred CHHHHHH
Q 006330 379 KASEAMA 385 (650)
Q Consensus 379 ~~~~~~~ 385 (650)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999974
No 180
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-43 Score=356.66 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 48999999998 24579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999887 69999998754321 1 1234677889999996 33443 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4678899999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-42 Score=352.77 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 24579999999999999999999999999999999999653 458999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+|+.+|++||+.+....+. .......++++++++.+|+.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5689999999999988999999998764331 23344456788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999865 899999999975 467889999999999999999987764
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=355.62 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 48999999998 235799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++|++|++.+++ +||+||+.++...+. ....++.++++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34678999999999887 899999998754321 1123344567788888888753211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 899999999965 5778899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
No 183
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-42 Score=351.27 Aligned_cols=213 Identities=31% Similarity=0.473 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCH
Confidence 69999999998310 011359999999999999999999999999999999999643 468999999998742
Q ss_pred ----hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
.. ++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..+.. +..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge 151 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGE 151 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHH
Confidence 12 257999999999999899999999865332 123344567788999999998766554 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999764 899999999976 34 56999999999999753
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=363.82 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++||+++|..+. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 589999999983110 001359999999999999999999999999999999999653 46899999998863
Q ss_pred -----hhccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 006330 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (650)
Q Consensus 225 -----~~~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (650)
..+++.|+||+|++. +++ .||+||+.++.... ....++..+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134678999999973 454 59999999875322 123444456678899999995 44444 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.||+|++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 577899999999999999
Q ss_pred EecCHHHHH
Q 006330 376 YFGKASEAM 384 (650)
Q Consensus 376 ~~G~~~~~~ 384 (650)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988864
No 185
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=355.06 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (650)
+.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 468999999998 245799999999999999999999999999999999996532 1 25899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.+++.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 34677999999999997 899999998754321 112334456678889999875321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999876 689999999975 577889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998874
No 186
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-42 Score=348.05 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++|++++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 47899999982 222 39999999999999999999999999999999643 568999999998743 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+||+||+.++..... .. .++.++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999999999999987643211 11 223455788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999965 466889999999999998764
No 187
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=368.08 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (650)
..|+++|++++|. .+.+++|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999983 1345799999999999999999999999999999999986431 135899999999985
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
..+++.++||||++.+|+ .||+|||.|+.... ... .+..++.+.++++.++|.+..++.++ .....||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245788999999999996 69999999875321 122 22334557788888888655455554 3457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||||++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=359.97 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|.. ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 5899999999831 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCc-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++. .++..||.||+.++.... ....++..++++++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566689999999865422 123444556788999999997766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 9999999999764 4 4699999999999999999988
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
No 189
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=355.69 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999998 245799999999999999999999999999999999996531 2 358999999998642
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++||+|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999999886 99999998743321 11122334456788999999865322211 2335689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||+++|++. .+.+.||+|++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
No 190
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=354.49 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+.+.+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 24579999999999999999999999999999999999653212 37999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+++.+|+.||+.++..... ....++..+.+.+.++.+++.+..... .+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 346679999999999998999999987653221 112333445667777777654211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 799999999975 4777899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 191
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=357.97 Aligned_cols=226 Identities=28% Similarity=0.457 Sum_probs=197.0
Q ss_pred eeEEEEeEEEEEeec----------cc------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006330 148 IYLKFTDVTYKVILK----------GM------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~----------~~------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~ 211 (650)
..|+++||++-+..+ +. .+.+...-++|+||+|+.||+..|||-||||||||+++|++ +.+|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-
Confidence 358899998765321 00 00122347899999999999999999999999999999995 5554
Q ss_pred cceEEEECCEeCCh-------hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc
Q 006330 212 VGGSITYNDHPYSK-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (650)
Q Consensus 212 ~~G~I~~~G~~~~~-------~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (650)
+.|+|+++|.++.+ ++ |+++++|||...|+|+.||.||..|+...+ .++++++++++.++|+..||...
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998742 23 567999999999999999999999998775 47899999999999999999987
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhh
Q 006330 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (650)
Q Consensus 284 ~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~ 362 (650)
.+. ++++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||+. |.+++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 775 56899999999999999999999999999999999999999999999999755 899999999975 68899
Q ss_pred cCEEEEEeCCeEEEecCHHHHH
Q 006330 363 FDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 363 ~D~iivL~~G~iv~~G~~~~~~ 384 (650)
-|||.+|++|+|+..|+|+|++
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999987
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=354.12 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 1 258999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++|++|++.+++ +||+||+.++..... ....+..++.+.+.++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34678999999999987 799999998754321 112333455678888888885422111 23445789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
No 193
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=351.01 Aligned_cols=214 Identities=26% Similarity=0.455 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++||+++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChh
Confidence 78999999982 222 38999999999999999999999999999999643 468999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+|+.||+.++..... .. .+...+++.++++.+||.+..++. +..||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999998999999987532111 11 223456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|+++.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999764 899999999975 467889999999999999999988764
No 194
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-44 Score=444.96 Aligned_cols=217 Identities=24% Similarity=0.351 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+|+||+|+|+ .+.+++|+|+|++|+|||.+||+||||||||||+++|.| +++| .+|+|.+||+|+++
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999992 123579999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.+|++|+|||||+.+|+. |+||||.++. ..++++.. ..+++.++ .++++.||.+|+.+ ..|||
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdeei~~al~~a~l~~~I~--~lp~GLdt~v~e~G-~~LSg 1374 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDADLWEALERAHIKDVID--RNPFGLDAEVSEGG-ENFSV 1374 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHHHHHHHHHcCCHHHHH--hCcCCCCceecCCC-CCCCH
Confidence 679999999999999976 9999998642 12333221 12233333 34677899998654 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+|+|+++. ...||+|++|++|++++.|
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 48999999999864 4669999999999999999
Q ss_pred CHHHHHH
Q 006330 379 KASEAMA 385 (650)
Q Consensus 379 ~~~~~~~ 385 (650)
+|+|+++
T Consensus 1452 t~~eLl~ 1458 (1495)
T PLN03232 1452 SPQELLS 1458 (1495)
T ss_pred CHHHHHh
Confidence 9999974
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=358.65 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=182.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 469999999998 245799999999999999999999999999999999996431 046899999999863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
..+++.++||+|++.+|+. ||+||+.+....+ .... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 2346789999999999984 9999999876432 1122 2345667788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-------
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~------- 371 (650)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999964 789999999975 57889999999996
Q ss_pred ----CeEEEecCHHHHHH
Q 006330 372 ----GSLLYFGKASEAMA 385 (650)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (650)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
No 196
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-42 Score=350.72 Aligned_cols=215 Identities=30% Similarity=0.541 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
|+++|++++| ++ ++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 4689999988 22 38999999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+|+.+|+.||+.++.... ..+..+..+.+.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 578999999999998899999999875332 123444556778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999765 899999999975 467889999999999999999988764
No 197
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=371.95 Aligned_cols=207 Identities=28% Similarity=0.483 Sum_probs=180.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|++ ||+++| +++. + |+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 899888 2222 3 8999999999999999999999999999999653 468999999998642
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
..++.++||+|++.+|+.+||+||+.|+.. ....++++++++.+||.+..+.. +..||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 246789999999999999999999998642 12345688999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999865 899999999975 57889999999999999999999
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9885
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=391.26 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (650)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|... | +++|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 59999999998 34579999999999999999999999999999999999653 3 368999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..++. +..|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13567999999999999999999999875422101123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 5778899999999999999999876
Q ss_pred H
Q 006330 383 A 383 (650)
Q Consensus 383 ~ 383 (650)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
No 199
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.4e-42 Score=357.52 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.|+++||+++|..+.. ...+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5899999999831100 00123579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 006330 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGe 300 (650)
..++.++||+|++. +++.+||.+++.+....+. .....+..+++.++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44443 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 899999999975 5777899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
No 200
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=356.76 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (650)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+|+. ||+||+.+...... ....+..++++.++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999986 99999998754321 1122334456788888888864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||+|++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
No 201
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-42 Score=371.72 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.6
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--------
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------- 225 (650)
||+++| +++. + |+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 2233 4 9999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..++.++||+|++.+|+.+||+||+.|+.... ...+.+++++++++.+||.+..++. +..|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24678999999999999999999999875421 1233456788999999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 577889999999999999999998875
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3e-42 Score=372.78 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=180.1
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCE----eCCh-------hc-cCcEEEEc
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK-------SL-KSKIGFVT 235 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~----~~~~-------~~-~~~i~yV~ 235 (650)
+...+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|+++|+ ++.. .. +++|+||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34579999999999999999999999999999999999643 46899999996 3321 12 25799999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 006330 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (650)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~ 315 (650)
|++.+|+.+||+||+.|+...+ ..++.+.++++.++++.+||.+..+.. +..|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986542 234566677889999999998766654 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
||||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999865 899999999975 577999999999999999999999875
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=352.39 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996532 2 358999999998631
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+|+ .||+||+.++..... ....+...+++.++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 34677999999999886 799999988653221 112233345678888888884211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98864
No 204
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=352.83 Aligned_cols=223 Identities=27% Similarity=0.419 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~ 224 (650)
+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++.
T Consensus 5 ~~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 5 IILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred ceEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996432 21 4799999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. ..++.++|++|++.+|+. ||+||+.++...+.. ......++.+.++++.+++.+...+.. +..+..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 152 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSG 152 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCH
Confidence 2 345679999999999975 999999987643211 122334556778888888754221111 234568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++..|
T Consensus 153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcC
Confidence 999999999999999999999999999999999999999999976 689999999965 466789999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14261 231 KTTQIF 236 (253)
T ss_pred CHHHHH
Confidence 998764
No 205
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.2e-42 Score=344.85 Aligned_cols=209 Identities=26% Similarity=0.477 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hc
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (650)
++++||++.|. .+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 47899999881 14689999999999999999999999999999999653 468999999998743 35
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++||+|++.+|+.+|++||+.+...... . .....++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHH
Confidence 6789999999999998999999987643211 1 1122355678899999997666553 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999965 4667899999999999998874
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=352.36 Aligned_cols=222 Identities=24% Similarity=0.379 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (650)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 2457999999999999999999999999999999999965321 35899999998873
Q ss_pred ----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
...++.++|++|++.+|+ .||+||+.++..... ........+++.+.++.+++.+...... +..+..|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134678999999999997 799999998753211 1123334566778888888754221111 23456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
+++.
T Consensus 229 ~~~~ 232 (249)
T PRK14253 229 QVIF 232 (249)
T ss_pred HHHH
Confidence 8763
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-42 Score=355.45 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (650)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 24579999999999999999999999999999999999542 11 468999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++|++|++.+|+. ||+||+.++..... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346789999999999875 99999998653221 112223345677788888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||+|++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4778899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-42 Score=343.31 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (650)
.+.|+||+|.|+.+ ++++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 47899999999542 24568999999999999999999999999999999999965311 568999999998753
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 45678999999999999999999998763210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999865 6787777766555678899999999999998765
No 209
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-42 Score=340.75 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++|+++.|... ..++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 58999999998311 11357999999999999999999999999999999999964323568999999998765567
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875310 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-CeEEEec
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-G~iv~~G 378 (650)
||+.+|++|||||||+|||+.++..+.+.|+++++.|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999976446788999999999 9999876
No 210
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=351.57 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cceEEEECCEeCC
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (650)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999864
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. .+++.++||+|++.+++. ||+||+.++...+.. ...++..+.+++.++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999975 999999987543211 11223345567778888875322211 2334678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999975 467889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 998864
No 211
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=358.31 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------cceEEEECCEe
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~-------~~G~I~~~G~~ 222 (650)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. |. .+|+|.++|.+
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999988 34579999999999999999999999999999999999653 32 17999999998
Q ss_pred CCh----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 223 ~~~----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
+.. ..++.++|++|++.++..+||+||+.++...... ......+..+++.++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999886321100 011112344568889999999765554 346899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEE
Q 006330 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 298 GGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~ii 367 (650)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999875 899999999975 4677899999
Q ss_pred EEeCCeEEEecCHHHHH
Q 006330 368 LLGKGSLLYFGKASEAM 384 (650)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (650)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
No 212
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-43 Score=440.93 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+++
T Consensus 1283 g~I~f~nVsf~Y~------~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR------EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeC------CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 4699999999993 123479999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.+|++|+|||||+.+|++ ||||||.... ..++++.. ..+++.++. ++++.||.+|..+ ..|||
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdeei~~al~~a~l~~~I~~--lp~GLdt~v~e~G-~~LSg 1424 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEEVWWALELAHLKTFVSA--LPDKLDHECAEGG-ENLSV 1424 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHHHHHHHHHcCcHHHHhh--CccCCCceecCCC-CcCCH
Confidence 679999999999999986 9999997321 12333221 122333332 4677899998643 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||||+||++|+|++.|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 48999999999865 5679999999999999999
Q ss_pred CHHHHHH
Q 006330 379 KASEAMA 385 (650)
Q Consensus 379 ~~~~~~~ 385 (650)
+|+++++
T Consensus 1502 ~~~eLl~ 1508 (1522)
T TIGR00957 1502 APSNLLQ 1508 (1522)
T ss_pred CHHHHHh
Confidence 9999975
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.4e-42 Score=353.70 Aligned_cols=214 Identities=31% Similarity=0.544 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 47899999882 123579999999999999999999999999999999999653 568999999998642
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCCCH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (650)
.+++.++|++|++.+++ .||+||+.+.... ...... ...+.++++.+ ++....+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34678999999998885 6999999874321 111111 11223444444 3332222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999764 4 569999999999999999
Q ss_pred CHHHHHH
Q 006330 379 KASEAMA 385 (650)
Q Consensus 379 ~~~~~~~ 385 (650)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9988653
No 214
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.1e-41 Score=351.73 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe-----C
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (650)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 59999999998 23579999999999999999999999999999999999643 468999999987 5
Q ss_pred Ch----h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006330 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (650)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (650)
.. . .++.++||+|++. +++.+|+.||+.+...... .....+...++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2457999999973 6777899999986532211 1112334567889999999963 3443 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999998765 899999999965 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998864
No 215
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-44 Score=375.11 Aligned_cols=347 Identities=27% Similarity=0.352 Sum_probs=242.1
Q ss_pred HHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCC-----------Cccccccccce--eee----eccccccee
Q 006330 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP-----------GRAGASGRNTH--IRK----SRSAQLKLE 81 (650)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~----~~~~~~~~~ 81 (650)
.++.+.|..|+-+-|||+-|+.+.-|..+|...++..-.. -..|+.-.++. +.. ..-.+..++
T Consensus 119 s~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~T 198 (497)
T COG5265 119 SDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLT 198 (497)
T ss_pred hHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCC
Confidence 4455667778888899999999988888887655431111 11111111111 000 111112333
Q ss_pred echhchhhhH-hhhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006330 82 LDEVSSGAAL-SRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (650)
Q Consensus 82 ~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (650)
+.++-.-.++ ..-+.-..+..++|. ++-+..+..+.++...+.+..+...+..++- .+..+..+.|+||+|.|.
T Consensus 199 vgD~V~~Nall~qls~Plnflg~~Yr--ei~q~ltdme~mfdLl~~~~~v~d~pda~~L---~~~~~g~v~F~~V~F~y~ 273 (497)
T COG5265 199 VGDLVNVNALLFQLSIPLNFLGFSYR--EIRQALTDMEKMFDLLDVEAEVSDAPDAPPL---WPVRLGAVAFINVSFAYD 273 (497)
T ss_pred chhHHhHHHHHhhhhhhhhhhHHHHH--HHHHhhhhHHHHHHhhccchhhccCCCCccc---cccccceEEEEEEEeecc
Confidence 3332211122 222222222222222 1222222223334344444333333221111 112345699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----hhccCcEEEEcc
Q 006330 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (650)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (650)
+.+++|+|+||++++|+.+||+||||+||||++++|- |++++. +|.|.+||+++. +.+|+-||.|||
T Consensus 274 -------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 274 -------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred -------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 5789999999999999999999999999999999999 688765 899999999985 367899999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~i 316 (650)
|..||.+ |+..|+.|+.......++..+.+.+.++++++.+ ++++|+.||.++.+ |||||||||+|||+++++|+|
T Consensus 345 DtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred cceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheee-ccCchHHHHHHHHHHhcCCCE
Confidence 9999965 9999999974321111112222344556677654 99999999988765 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHH
Q 006330 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (650)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~ 386 (650)
|+|||.||+||..++++|...|++++ .|+|.+++.|++++ .--+|.|+||++|+|++.|+|+++++.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 99999999999999999999999987 49999999999986 356999999999999999999999863
No 216
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=354.13 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 245699999999999999999999999999999999996531 2 368999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+|+ .||+||+.++..... .......++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999887 499999998754321 1122223445677777775432211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999975 4678899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
No 217
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=354.66 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcceEEEECCEeC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~ 223 (650)
..|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|.++
T Consensus 20 ~~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEc
Confidence 368999999998 34679999999999999999999999999999999999653 3 3589999999987
Q ss_pred Ch-----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 224 SK-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 224 ~~-----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.. .+++.++|++|++.+|+ +||+||+.++.... ...+..+....+.++++.+++.+..++.. +..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSg 166 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSG 166 (276)
T ss_pred cccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCH
Confidence 42 34678999999999998 79999999875321 11234444556778889999875332222 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|
T Consensus 167 Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 589999999975 577899999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 245 ~~~~~~ 250 (276)
T PRK14271 245 PTEQLF 250 (276)
T ss_pred CHHHHH
Confidence 998874
No 218
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=387.05 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
. .++.++||+|++.+++.+||+||+.++...+.. ......+.++++.++++.+||.+..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122344456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999998765
Q ss_pred H
Q 006330 383 A 383 (650)
Q Consensus 383 ~ 383 (650)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=351.89 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--cceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~--~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+|+||||||||+++|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 68999999998 2356999999999999999999999999999999999965321 2 48999999998732
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++||+|++.+|+ +||+||+.++...+. ...+.+..+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34678999999999997 899999988754321 123334455677888888884321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe-----CCeE
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~-----~G~i 374 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 689999999975 5778999999998 5999
Q ss_pred EEecCHHHHH
Q 006330 375 LYFGKASEAM 384 (650)
Q Consensus 375 v~~G~~~~~~ 384 (650)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
No 220
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=387.39 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhcc--C-C-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998754210 0 0 0012334556788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+...||+|++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999965 4778899999999999999999
Q ss_pred HHHH
Q 006330 380 ASEA 383 (650)
Q Consensus 380 ~~~~ 383 (650)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=356.73 Aligned_cols=223 Identities=22% Similarity=0.363 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .| +.+|+|.++|+++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 369999999998 23469999999999999999999999999999999999642 13 36899999998863
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. .+++.++||+|++.+++. ||+||+.++...+.. ......++++.++++.+|+.+..... -+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999998875 999999987543211 12233445677888888874211111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999975 467889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998874
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=348.43 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (650)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 68999999998 235799999999999999999999999999999999996431 21 48999999998731
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
.+++.++|++|++.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34678999999999998 6999999987543211 11222344566778877764221111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4778899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
+.+..
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
No 223
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=350.29 Aligned_cols=222 Identities=23% Similarity=0.417 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cceEEEECCEeCC
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (650)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 59999999998 23469999999999999999999999999999999999654 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
..+++.++|++|++.+|+ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCH
Confidence 134677999999999998 899999998653221 1123344567788999998854322111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeC-----C
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~-----G 372 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57889999999999 9
Q ss_pred eEEEecCHHHHH
Q 006330 373 SLLYFGKASEAM 384 (650)
Q Consensus 373 ~iv~~G~~~~~~ 384 (650)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999974
No 224
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.4e-41 Score=347.57 Aligned_cols=222 Identities=24% Similarity=0.343 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 59999999998 2356999999999999999999999999999999999963223568999999998743
Q ss_pred -hccC-cEEEEccCCcCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCH
Q 006330 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 -~~~~-~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSG 298 (650)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.+|+.+ ..++.++ ..|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 1222 488999999999999999999876432110 01112233456788899999963 4444321 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh-cCEEEEEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~-~D~iivL~~G~iv~~ 377 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999998779999999999653 4455 899999999999999
Q ss_pred cCHHHH
Q 006330 378 GKASEA 383 (650)
Q Consensus 378 G~~~~~ 383 (650)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.8e-42 Score=348.51 Aligned_cols=200 Identities=33% Similarity=0.490 Sum_probs=171.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---hhccCcEEEEc-cCCcCCCC
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPH 243 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~ 243 (650)
+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999653 46899999998753 23567899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006330 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (650)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPT 323 (650)
+||+||+.+....+ ....++..+++.++++.+||.+..++.+ ..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 1233444566788999999987777654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
+|||+.++..+.+.|++++++ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999765 899999999975 567889999999999998765
No 226
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=341.79 Aligned_cols=203 Identities=30% Similarity=0.503 Sum_probs=173.0
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-----
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (650)
.+ ||+++| +++.+ |+||+|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 45 888888 23444 99999999 9999999999999999999999653 468999999988641
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..+.. +..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHH
Confidence 24568999999999998899999998865321 2333456788999999997655543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999875 899999999975 466889999999999998765
No 227
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-43 Score=438.78 Aligned_cols=215 Identities=23% Similarity=0.387 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (650)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|++||+|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 3699999999993 223569999999999999999999999999999999996 4544 5899999999986
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCCC
Q 006330 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (650)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (650)
+.+|++|+|||||+.+|+. ||+|||.... ..+++ .+.++++..+ ++++.||.+|+.+ ..|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~G-~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLEGG-SNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccCCc-CcC
Confidence 3689999999999999976 9999996421 22332 3344444433 4667899998654 569
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||||||++|||||+++ |+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 47999999999864 5789999999999999
Q ss_pred EecCHHHHHH
Q 006330 376 YFGKASEAMA 385 (650)
Q Consensus 376 ~~G~~~~~~~ 385 (650)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=347.92 Aligned_cols=222 Identities=22% Similarity=0.385 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (650)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.+||.++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 48899999988 245799999999999999999999999999999999996431 2 368999999998742
Q ss_pred ------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..++.++|++|++.+|+. |++||+.++..... ....+..++++.+.++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999975 99999998653221 1123344567888899988854322111 3345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...||++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 889999999975 5788899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
No 229
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-42 Score=333.61 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
+|+.+|++|+. .+|.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 37889999987 46789999999999999999999999999999999999764 468999999999863
Q ss_pred -hccCcEEEEccCCcC-CCCCCHHHHHHHHHhccCCCCc--cHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
++.++-+.+||+..+ || .||.|-+.++.. |... ...+..+.+++++...++.+..... ...||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEq 141 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQ 141 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHH
Confidence 456677999999776 65 699999999863 3322 2234555677888888887765543 468999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 302 KRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 302 qRv~IA~aL~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||.+||.|+. ++++||||||||+||...+..++++.++++++|..|++|.||++- ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999975 445899999999999999999999999999999999999999875 66899999999999999
Q ss_pred EecCHHHHH
Q 006330 376 YFGKASEAM 384 (650)
Q Consensus 376 ~~G~~~~~~ 384 (650)
..|+|++++
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999876
No 230
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.6e-41 Score=348.23 Aligned_cols=219 Identities=20% Similarity=0.336 Sum_probs=180.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| ++++|+|+||+|++||+++|+||||||||||+++|+|... | +++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 368999999987 2469999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 225 ~-~-~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
. . .++.++||+|++. +.+.+|+.+|+.+.+.... ... ..+++.++++.++|.+.. + +-+..+..|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~-~-~~~~~~~~LS~Gq 145 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAA-R-VLKLYPFEMSGGM 145 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChh-h-hhhcCCcccCHHH
Confidence 3 2 2357999999974 4566799999877543211 111 235688899999997521 0 1123356899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 899999999975 4667899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
++++.
T Consensus 225 ~~~~~ 229 (254)
T PRK10418 225 VETLF 229 (254)
T ss_pred HHHHh
Confidence 98864
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=352.44 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 369999999998 235799999999999999999999999999999999996532 146899999999863
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. .+++.++||+|++.+|+. ||+||+.+....+. ... ...++++++++.++|.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988885 99999998754321 122 34456888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEE-EEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ii-vL~~G~iv~~ 377 (650)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++|||++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 5677899975 6799999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-41 Score=383.04 Aligned_cols=214 Identities=23% Similarity=0.417 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred --h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
. .++.++||+|++.+++.+||+||+.++... ..+.++++.++++.+||.+..+.. +..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 235699999999999999999999885321 123456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999888999999999965 4778999999999999999999877
Q ss_pred HH
Q 006330 383 AM 384 (650)
Q Consensus 383 ~~ 384 (650)
+.
T Consensus 227 ~~ 228 (510)
T PRK15439 227 LS 228 (510)
T ss_pred cC
Confidence 53
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.8e-41 Score=335.81 Aligned_cols=191 Identities=52% Similarity=0.894 Sum_probs=164.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-hc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (650)
.|+++||+++|.... ...++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 589999999983210 011367999999999999999999999999999999999965112468999999998864 45
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999889999999864310 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998764
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=351.29 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 479999999998 245799999999999999999999999999999999996532 1 25899999999873
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
. .+++.|+|++|++.+++. ||.||+.++...+. ... ..++.+.+.++.+++....... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998875 99999998653321 111 2234456677777764221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe--------
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~-------- 370 (650)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999975 4778999999998
Q ss_pred -CCeEEEecCHHHHH
Q 006330 371 -KGSLLYFGKASEAM 384 (650)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (650)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999999874
No 235
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-41 Score=339.45 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=169.6
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---h---
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~--- 225 (650)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 46888888 24579999999999999999999999999999999999653 46899999999853 1
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++. +..||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23568999999999999899999999875432 123444566788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. ..+.||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877999999999975 34789999875
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=349.00 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeC
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~ 223 (650)
++.+.+++++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.+. +.+|+|.++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 4568999999987 3467999999999999999999999999999999999965420 2589999999987
Q ss_pred Ch------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 006330 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (650)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (650)
.. .+++.++|++|++.+| .+|++||+.++...+. . ..+..+++.++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 42 3467799999999888 5899999998764321 1 2233467888999999865332222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe-------
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~------- 370 (650)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.+.||+|++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 789999999975 4778999999996
Q ss_pred -CCeEEEecCHHHHH
Q 006330 371 -KGSLLYFGKASEAM 384 (650)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (650)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998875
No 237
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.9e-41 Score=352.08 Aligned_cols=226 Identities=25% Similarity=0.455 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.|+++||+++|...+. ....++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 5899999999831000 00013679999999999999999999999999999999999543 468999999998642
Q ss_pred -----hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
.+++.++|++|++ .+++..|+.||+.+...... .....+...+++++++.+|+. +..++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 46677899999987543111 123444556789999999996 34444 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998865
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-41 Score=341.60 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||++.|..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999988311 11367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++|++|++.+|+.+|+.||+.++..... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 246789999999999988999999998754321 133445566789999999997766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|||+++|++. +.+.||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 4899999999975 4589999999999986
No 239
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-42 Score=347.99 Aligned_cols=215 Identities=31% Similarity=0.505 Sum_probs=174.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 47899999982 112479999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCCCH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (650)
..++.++|++|++.+++ .||+||+.+.... ...... ...+.+.++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34678999999999886 6999999875321 111111 11234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999964 8999999999764 54 49999999999999999
Q ss_pred CHHHHHHH
Q 006330 379 KASEAMAY 386 (650)
Q Consensus 379 ~~~~~~~~ 386 (650)
+++++.+.
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=372.82 Aligned_cols=228 Identities=27% Similarity=0.443 Sum_probs=197.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cceEEEECCEeCCh-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (650)
.|+++|++..|... .+...+++||||+|++||++||+|.|||||||+.++|.|.+..+. .+|+|.++|+++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998542 233579999999999999999999999999999999999765431 47999999997631
Q ss_pred ------h-ccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ------~-~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
. ..++|+||||++ .+.|-+||.+.|.-....+.. .+.++.++++.++++..||++-... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 246799999997 467778999999876665432 3477888899999999999876554 5689999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 5999999999986 478899999999999999
Q ss_pred EecCHHHHHHH
Q 006330 376 YFGKASEAMAY 386 (650)
Q Consensus 376 ~~G~~~~~~~~ 386 (650)
+.|+++++++-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
No 241
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=374.06 Aligned_cols=228 Identities=26% Similarity=0.422 Sum_probs=195.0
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (650)
+.++++||+..|..++. ...+...+++||||++++||++||||+||||||||.|+|+|... +++|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccc
Confidence 46899999999965321 11234679999999999999999999999999999999999553 46999999998731
Q ss_pred ------hhccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
...++++-+||||| .|.|.+||+++|.-......+ ...+++++++.++++..||+.. +.++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567888999986 589999999999987654432 2356677889999999999842 445778999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||||||++|||||+.+|++|++|||||+||+..+..++++|+++.++ |.|.|+||||+. .+.+.||||+||++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999865 999999999976 478899999999999999
Q ss_pred EecCHHHHH
Q 006330 376 YFGKASEAM 384 (650)
Q Consensus 376 ~~G~~~~~~ 384 (650)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888875
No 242
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=350.22 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 235799999999999999999999999999999999996431 1 25899999998863
Q ss_pred -----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 006330 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (650)
..+++.++|++|++.+++ .||+||+.++...+ ... ....+++.++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234678999999999887 49999999875432 111 12345566777777774321111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe---------
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~--------- 370 (650)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 5789999999998
Q ss_pred CCeEEEecCHHHHH
Q 006330 371 KGSLLYFGKASEAM 384 (650)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (650)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
No 243
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-41 Score=345.66 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=170.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHH
Q 006330 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (650)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~ 252 (650)
|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 5689999999987532 2235899999999998999999998
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006330 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (650)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (650)
......+ .....+..+++.++++.+||.+..++. +..||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233444556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 333 ~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
.+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999765 899999999975 47788999999999999998866543
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.6e-41 Score=343.93 Aligned_cols=228 Identities=27% Similarity=0.345 Sum_probs=180.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++||+++| +++++|+|+||+|++|++++|+||||||||||+++|+|....++.+|+|.++|+++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2457999999999999999999999999999999999964213468999999987642
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhc-cC--C-CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHH
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALL-RL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGG 299 (650)
. .++.++|++|++.+++.+|+.+++.+.... +. . .........+.+++.++.+++++ ..++.+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 1 235699999999988888887776543211 00 0 00112233556778899999964 333322 1369999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh-cCEEEEEeCCeEEEec
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~-~D~iivL~~G~iv~~G 378 (650)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999965 35555 8999999999999999
Q ss_pred CHHHHHHHHHhcC
Q 006330 379 KASEAMAYFSSIG 391 (650)
Q Consensus 379 ~~~~~~~~f~~~g 391 (650)
+++.+ +.++..+
T Consensus 229 ~~~~~-~~~~~~~ 240 (248)
T PRK09580 229 DFTLV-KQLEEQG 240 (248)
T ss_pred CHHHH-HHHHhcC
Confidence 98854 4444333
No 245
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.5e-41 Score=345.29 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe-----C
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (650)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 23569999999999999999999999999999999999643 468999999976 4
Q ss_pred Ch----h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006330 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (650)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (650)
.. . .++.++|++|++. +++.+|+.||+.+..... . ........+++.++++.+|+.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 1 2356999999974 455679999997643211 1 0111234567889999999963 4444 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998764 899999999965 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.5e-42 Score=348.04 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=172.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
++++|+++.|.. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 468999998821 123579999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 34567999999998886 69999998753211 1111111 122233332 11222222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 78999999999764 5 48999999999999999998
Q ss_pred HHHHHH
Q 006330 381 SEAMAY 386 (650)
Q Consensus 381 ~~~~~~ 386 (650)
+++.++
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-41 Score=353.34 Aligned_cols=213 Identities=22% Similarity=0.379 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++|+ .+.+.+|+|+||+|++||+++|+||||||||||+++|+|... .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 489999999983 124569999999999999999999999999999999998653 47999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCC
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (650)
.+++.|+||||++.+|+. ||+||+.... .... +++.+.++.+||.+.. ++.++. ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467889999999999975 9999996421 1122 3456667777776433 334433 235699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||||++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999974 34 45999999999999999
Q ss_pred cCHHHHHH
Q 006330 378 GKASEAMA 385 (650)
Q Consensus 378 G~~~~~~~ 385 (650)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
No 248
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-41 Score=342.89 Aligned_cols=211 Identities=24% Similarity=0.411 Sum_probs=175.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 6 ~~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~ 75 (225)
T PRK10247 6 PLLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLK 75 (225)
T ss_pred ceEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCC
Confidence 369999999998 3457999999999999999999999999999999999954 3568999999988642
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerq 302 (650)
.+++.++|++|++.+++. ||+||+.+....+.. . ...+++.++++.+++.+ ..++ .+..|||||||
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~q 144 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQ 144 (225)
T ss_pred HHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHH
Confidence 346789999999998874 999999986433211 1 12345778999999953 3443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEe-CCeEEEecCH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKA 380 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~-~G~iv~~G~~ 380 (650)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++.. + ..||++++|+ ++..+..|++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhh
Confidence 999999999999999999999999999999999999999764 8999999999754 5 5699999995 5666777766
Q ss_pred H
Q 006330 381 S 381 (650)
Q Consensus 381 ~ 381 (650)
+
T Consensus 223 ~ 223 (225)
T PRK10247 223 E 223 (225)
T ss_pred c
Confidence 4
No 249
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=326.88 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999888 5678999999999999999999999999999999998 4544 46899999998762
Q ss_pred -------------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006330 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (650)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (650)
+.+|.+.|+|||..+|+++|||.||+.-+...-+ ..++.+..++++.+|...|+.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1356789999999999999999999976532211 35678888899999999999887764
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. .-+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999764 5677899999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999974
No 250
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=344.42 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++|. ..+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 488999999982 12469999999999999999999999999999999999653 568999999988742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCC
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVS 297 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LS 297 (650)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+. .++.. +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 356779999999998875 999999875321 111 122233333333221 12222 23357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999754 4 56999999999999999
Q ss_pred cCHHHHHH
Q 006330 378 GKASEAMA 385 (650)
Q Consensus 378 G~~~~~~~ 385 (650)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
No 251
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=353.07 Aligned_cols=225 Identities=24% Similarity=0.431 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|...+ ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 245799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC--C-------Ccc-HHHHHHHHHHHHHHcCCCccccccc
Q 006330 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N-------TLT-KQQKEKRAIDVINELGLERCQDTMI 288 (650)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (650)
. .+++.++||+|++.+++ .||+||+.++...... . ... .....+++.++++.+++.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34678999999998887 4999999987532100 0 011 1233566788899998854332222
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEE-E
Q 006330 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (650)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~i-i 367 (650)
+..+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEE
Confidence 334678999999999999999999999999999999999999999999999976 589999999975 467889997 5
Q ss_pred EEeCCeEEEecCHHHHH
Q 006330 368 LLGKGSLLYFGKASEAM 384 (650)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (650)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-41 Score=378.36 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCCh---
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~--- 225 (650)
|+++||+++| +++++|+||||++++||+++|+||||||||||+++|+|... | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 24579999999999999999999999999999999999653 3 258999999998752
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.++|.+..+. ..+..|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322110 12233445678899999999764421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999965 5778899999999999999998764
No 253
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=378.06 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 59999999998 24569999999999999999999999999999999999643 468999999998742
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
.+++.|+||+|++.+++.+||+||+.++............+..+++.++++.+||.+..+.. +..||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHH
Confidence 24678999999999999999999999864211101122344556788999999997655543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999975 57788999999999999887653
No 254
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=348.90 Aligned_cols=220 Identities=23% Similarity=0.389 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++||+++|. +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999653 468999999998754333
Q ss_pred -CcEEEEccCCcCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 229 -~~i~yV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+.++|++|++.+. ...++++|+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345677889999998766654 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||+++++ +|++++.|+++++.
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999999999877999999999975 477899999877 89999999988763
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-41 Score=385.53 Aligned_cols=227 Identities=24% Similarity=0.380 Sum_probs=189.2
Q ss_pred eeEEEEeEEEEEeeccc--c-ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (650)
..|+++||++.|...+. . ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 36999999999842100 0 0012469999999999999999999999999999999999653 46899999999874
Q ss_pred h-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006330 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (650)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (650)
. .++++|+||+|++ .+++.+||.||+.+....+. .....+..+++.++++.+||+ +..++ .+.
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2467899999997 58889999999998654321 112344557788999999996 44444 457
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 899999999975 5778999999999999
Q ss_pred EEEecCHHHHH
Q 006330 374 LLYFGKASEAM 384 (650)
Q Consensus 374 iv~~G~~~~~~ 384 (650)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999875
No 256
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.2e-41 Score=340.39 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCCh-hc-cCcEEEEccCCc--CCCCC
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-SL-KSKIGFVTQDDV--LFPHL 244 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~-~~-~~~i~yV~Q~~~--l~~~l 244 (650)
+|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|+++.. .. ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 168999999998753 22 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006330 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (650)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTs 324 (650)
|+.||+.+...... .......+++.++++.+++.+.. ...+..+..|||||||||+|||||+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987653221 11233456788999999997320 01123456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|++++.|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999864 899999999975 577889999999999999999998874
No 257
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=344.40 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEEC------CEe
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~------G~~ 222 (650)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++ |++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcc
Confidence 69999999998 35679999999999999999999999999999999999643 345555544 555
Q ss_pred CC----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 223 ~~----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1356789999999999988999999998754321 1123445567889999999863211111 224568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|++++.|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 699999999975 466889999999999999999
Q ss_pred CHHHHH
Q 006330 379 KASEAM 384 (650)
Q Consensus 379 ~~~~~~ 384 (650)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
No 258
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=343.32 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=182.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (650)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 369999999998 245799999999999999999999999999999999996542 1 15899999997652
Q ss_pred --------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 225 --------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
..+++.++|++|++.+|+. ||+||+.++.... ... ....++++.++++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346789999999999986 9999999875322 111 2223456777888887743211111 233568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 689999999965 477899999999999999
Q ss_pred EecCHHHHH
Q 006330 376 YFGKASEAM 384 (650)
Q Consensus 376 ~~G~~~~~~ 384 (650)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999998764
No 259
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.1e-41 Score=339.75 Aligned_cols=209 Identities=30% Similarity=0.545 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|+++.|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCH
Confidence 478999999882 123569999999999999999999999999999999999643 568999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (650)
..++.++|++|++.+++ .||+||+.+.... .. .+++.++++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 34568999999998887 6999999874211 11 2345567777777654443221 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+ +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999998764 89999999976 34 799999999999998764
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=376.84 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=183.1
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-----h
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-----~ 226 (650)
++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888888 24579999999999999999999999999999999999653 468999999998742 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++||+|++.+++.+||+||+.++............+..++++++++.+++.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999998998999999998764211010112334456788999999998666654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. ++.+.||+|++|++|++++.|++++.
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999888999999999975 57788999999999999999997664
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.9e-41 Score=377.71 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEEC----------
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~---------- 219 (650)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+|+|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 2457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH
Q 006330 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (650)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v 271 (650)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... ..+.++.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3221 0 1235679999997 67888899999999875432 12344556788
Q ss_pred HHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 006330 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (650)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~ 350 (650)
.++++.+||++..+.. +..|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999998766543 468999999999999999999999999999999999999999999999975 4899999
Q ss_pred EecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHH
Q 006330 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (650)
Q Consensus 351 ~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f 387 (650)
+||++. .+.+.||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999975 466889999999999999999998887654
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.2e-41 Score=333.05 Aligned_cols=190 Identities=31% Similarity=0.438 Sum_probs=162.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4789999988 2356999999999999999999999999999999999964223468999999998753
Q ss_pred h-ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
. .+..++|++|++.+++.+|+++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1 2446999999999998888887760 0 0136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh-hcCEEEEEeCCeEEEecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~-~~D~iivL~~G~iv~~G~~~~~ 383 (650)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .||++++|++|++++.|+ .++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999999999999999999877899999999976 4555 799999999999999994 446
Q ss_pred HHHHH
Q 006330 384 MAYFS 388 (650)
Q Consensus 384 ~~~f~ 388 (650)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 65554
No 263
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=321.40 Aligned_cols=216 Identities=29% Similarity=0.478 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.+..++++.+|+. ..+.+|+|||++|.+||.++++||||||||||||+++|... +..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888832 22569999999999999999999999999999999999553 5689999999998532 2
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
..-|.|||++.|+|.+||.||+.|+.+++ .+.+.++.+++.+.+...||.+..+.. +.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHH
Confidence 23599999999999999999999999886 477899999999999999998776654 5789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC--CeEEEecCHHH
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASE 382 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~--G~iv~~G~~~~ 382 (650)
||..+|++|+||||+++||.-+++.+.++|-++++. |+.+++|||+.. +..-++++++||+. |||+..=+++=
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCH
Confidence 999999999999999999999999999999998864 999999999975 46678999999985 79998877663
No 264
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-41 Score=341.38 Aligned_cols=215 Identities=33% Similarity=0.518 Sum_probs=171.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|. +.+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 47899999882 1356999999999999999999999999999999999964 3568999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
.+++.++|++|++.+++ .||+||+.++... .......+ .+.+.++.+ +...++.+. ..+..|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHH
Confidence 34677999999999886 6999999875321 11111111 122233322 222333332 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
|||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 9999999999764 4 45999999999999999998
Q ss_pred HHHHH
Q 006330 381 SEAMA 385 (650)
Q Consensus 381 ~~~~~ 385 (650)
+++.+
T Consensus 220 ~~~~~ 224 (236)
T cd03253 220 EELLA 224 (236)
T ss_pred HHHhh
Confidence 77643
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.5e-41 Score=378.22 Aligned_cols=227 Identities=27% Similarity=0.463 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 006330 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (650)
..|+++||++.|..+.. .+.+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ + .+|+|+++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEcc
Confidence 36999999999831100 0001357999999999999999999999999999999999964 3 5899999998864
Q ss_pred h-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006330 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (650)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (650)
. .++++++||+|++ .+++.+||+||+.++...+.. .....+.++++.++++.+||. +..+. .+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCc
Confidence 2 1356799999997 488889999999987542211 123344556788999999996 34554 356
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4778899999999999
Q ss_pred EEEecCHHHHH
Q 006330 374 LLYFGKASEAM 384 (650)
Q Consensus 374 iv~~G~~~~~~ 384 (650)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999998874
No 266
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-40 Score=331.39 Aligned_cols=198 Identities=24% Similarity=0.424 Sum_probs=169.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---hh
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (650)
|+++|++++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. ..
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 2 LEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred eEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHH
Confidence 7899999998 23569999999999999999999999999999999999653 56899999999874 23
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.+++++|++|++.+++.+||+||+.+....+. . ...++++++++.+||.+..++. +..||||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 140 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVAL 140 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHH
Confidence 56789999999999999999999998754321 1 2345678899999998665553 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. +....+|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999999999998778999999999764 54555777766
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-40 Score=342.09 Aligned_cols=200 Identities=29% Similarity=0.472 Sum_probs=172.8
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEccCCcCCCCCCHH
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~ 247 (650)
+|+|+||+|++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 7999999998742 3456799999998888789999
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 006330 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (650)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLD 320 (650)
||+.+..... ...++..++++++++.+||.+..++. +..||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9999863211 22334456788999999997665554 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999965 477899999999999999999988763
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=383.59 Aligned_cols=225 Identities=22% Similarity=0.361 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC-----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~----- 223 (650)
.|+++||++.|... .+..++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 69999999998311 123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006330 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (650)
Q Consensus 224 --------~~----~~~-~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (650)
.. .++ +.||||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2345556678899999999964110 1
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEE
Q 006330 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~ii 367 (650)
-+..+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++++++ |+|||++||++. .+.++||||+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 12346789999999999999999999999999999999999999999999999865 899999999975 4778999999
Q ss_pred EEeCCeEEEecCHHHHH
Q 006330 368 LLGKGSLLYFGKASEAM 384 (650)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (650)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999998874
No 269
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=323.62 Aligned_cols=170 Identities=31% Similarity=0.607 Sum_probs=153.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
++++|++++| +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 4689999988 23469999999999999999999999999999999999643 468999999998752 4
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+||+||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998899999973 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999965 56678999999999974
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-40 Score=373.91 Aligned_cols=224 Identities=23% Similarity=0.410 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcceEEEECCEeCCh
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (650)
.|+++||+++|... +..+++|+|+||+|++||++||+||||||||||+|+|+|.+.++ +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 59999999998311 11357999999999999999999999999999999999976421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 006330 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (650)
Q Consensus 226 -------~~~-~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (650)
..+ +++|||+|++. +++.+||+||+.+...... ..+..+..++++++++.+||.+. .++ .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 6777899999986543211 23345566788999999999752 243 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999865 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
No 271
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.2e-42 Score=424.13 Aligned_cols=214 Identities=21% Similarity=0.362 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.|+.+
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 48999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCCC
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (650)
.+|++|+||||+|.+|++ ||||||.... ..++ +.+.++++..+| +++.|+.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 578999999999999986 9999996421 1222 334555555543 56789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++..+ ++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998754 7999999999864 46799999999999999
Q ss_pred ecCHHHHHH
Q 006330 377 FGKASEAMA 385 (650)
Q Consensus 377 ~G~~~~~~~ 385 (650)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
No 272
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-40 Score=329.61 Aligned_cols=195 Identities=26% Similarity=0.424 Sum_probs=168.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---hh
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (650)
|+++||++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHH
Confidence 4789999988 34579999999999999999999999999999999999643 46899999998864 24
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+||+||+.+.... . ..++++++++.+++.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 1 235678889999998766554 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++.. ....||+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
No 273
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-40 Score=331.57 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-h
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~ 226 (650)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchh
Confidence 369999999987 24579999999999999999999999999999999999543 468999999998753 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+|++||+.+....+. . ..++.+.++++.++|++..++. +..||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999988999999988654321 1 1234567888999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||+++.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999975 57889999999864
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-40 Score=409.06 Aligned_cols=224 Identities=26% Similarity=0.388 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+++|. ++++.+|+||||+|++||++||+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123679999999999999999999999999999999999653 468999999998852
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.|||+||++.+++.+||+|||.+.+..+. .+.++.+++++++++.+||.+..|+.+ +.|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 356789999999999999999999998776542 344455667889999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||+||+.+|+||||||||+|||+.+++.+.+.|++++++|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999965 688899999999999999999999998
Q ss_pred HHHH
Q 006330 385 AYFS 388 (650)
Q Consensus 385 ~~f~ 388 (650)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 275
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-41 Score=314.84 Aligned_cols=212 Identities=32% Similarity=0.504 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++++++.+.. ..+...||++|++.|++||.+||||||||||||||-+++|. .. +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CC-CCCceEEEcCcchhhcCH
Confidence 5888999887632 22456899999999999999999999999999999999994 33 568999999999752
Q ss_pred ----hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
.+ .+++|||||...|.|+||..||+...+.++.. ...+....+.+.++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 23 46799999999999999999999998877642 233445667889999999876553 567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
+|||+||||+...|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +...|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999975 4999999999975 567899999999999975
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=373.71 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||++.|.. .+++++|+|+||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 5999999998721 12356999999999999999999999999999999999964 33358999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCC--CccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (650)
..++.++||+|++ .+++.+||.||+.++....... ....++..++++++++.+++. +..++. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998764211100 012334456788999999996 455554 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cCHHHH
Q 006330 378 GKASEA 383 (650)
Q Consensus 378 G~~~~~ 383 (650)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987664
No 277
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.9e-40 Score=372.47 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEEC-CEe---C
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~-G~~---~ 223 (650)
..|+++||+++|... ..+++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 468999996 532 2
Q ss_pred C-------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 006330 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (650)
Q Consensus 224 ~-------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (650)
. ...+++|+||+|++.+++.+||+||+.+..... .+.+..++++.++++.+||.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 1 123567999999999999999999998764321 223334567889999999964 2343
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999764 899999999975 5778999999999
Q ss_pred CCeEEEecCHHHHHH
Q 006330 371 KGSLLYFGKASEAMA 385 (650)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (650)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-40 Score=334.35 Aligned_cols=208 Identities=27% Similarity=0.448 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++|. ..++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 378999999982 12357999999999999999999999999999999999964 3568999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCC
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (650)
.+++.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 599999975311 111 2344455555554322 2222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||+++|++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 6899999999754 4 45999999999999988
Q ss_pred cC
Q 006330 378 GK 379 (650)
Q Consensus 378 G~ 379 (650)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
No 279
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-40 Score=339.16 Aligned_cols=202 Identities=25% Similarity=0.462 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 68999999998 24579999999999999999999999999999999999653 4689999987 2
Q ss_pred CcEEEEccCCcCCCC--CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~--lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
..++|++|++.+++. .|+++++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999887765 3788877542 1 111 23567889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999865 899999999975 57788999999964 799999988764
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-40 Score=322.31 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4789999988 23579999999999999999999999999999999999643 468999999988642
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999998642 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999965 4667899999999985
No 281
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.8e-40 Score=325.22 Aligned_cols=194 Identities=25% Similarity=0.393 Sum_probs=165.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHH
Confidence 4789999988 3457999999999999999999999999999999999954 3468999999998642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.++.++|++|++.+++.+||.||+.+....+. . .++++.++++.+++.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999999988999999988654321 1 134577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEE
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iiv 368 (650)
||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998779999999999754 34677664
No 282
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-39 Score=404.10 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||++.|. ++++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4699999999982 124679999999999999999999999999999999999653 568999999999853
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..|+.+|||+|++.+++.+||+|||.|.++.+. .+.++.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 356789999999999999999999999876542 33445567789999999998877654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+||+||+.+|+||||||||+|||+.++..+.+.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999965 577899999999999999999999998
Q ss_pred HHHH
Q 006330 385 AYFS 388 (650)
Q Consensus 385 ~~f~ 388 (650)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7764
No 283
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.6e-40 Score=325.95 Aligned_cols=193 Identities=26% Similarity=0.391 Sum_probs=165.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHH
Confidence 7899999998 24579999999999999999999999999999999999543 568999999998742 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++.+..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997655543 35799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEE
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ii 367 (650)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++.. ...+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999987779999999999753 46677644
No 284
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.1e-40 Score=332.09 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=168.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5677777776 45679999999999999999999999999999999999543 568999999987531
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
..+...+++.+||+||+.+..... .....+..+++.++++.++|++..++. +..||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 112234556789999999875432 123344456778889999998776654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999965 467789999999999998765
No 285
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-40 Score=357.51 Aligned_cols=216 Identities=26% Similarity=0.446 Sum_probs=192.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (650)
+.++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.. . +++|+|.+||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-P-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-c-CCCceEEECCEEccCCC
Confidence 469999999998 5678999999999999999999999999999999999954 3 56899999999874
Q ss_pred --hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
+....-|+.|+||..|+|+|||.|||.++...+.+ .-++.....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 13456799999999999999999999988654331 23567778888999999999964466665 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|.|.|||||..+++|||||||||+|+......+.+.+++|.++|.+||+|||++. ++++.||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999964 7999999999999999998887
No 286
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.8e-40 Score=335.64 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=169.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|+++.|.. +.++++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 46999999999831 11246999999999999999999999999999999999964 3568999999987642
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGer 301 (650)
..++.++|++|++.+|+ .||+||+.++.................++++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34577999999998886 59999998754211000000111122356778877 66544443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 6899999999764 5 45999999999974
No 287
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.4e-40 Score=339.09 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=172.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|++++|. ..++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 123579999999999999999999999999999999999653 568999999998743
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.+++.++||+|++.+|+ .|++||+.... ....... ...+.+.++.+ +...++.++ .....|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 45678999999999887 49999986421 1111111 11223334433 112233332 24568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999864 44 59999999999999999
Q ss_pred CHHHHHH
Q 006330 379 KASEAMA 385 (650)
Q Consensus 379 ~~~~~~~ 385 (650)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-39 Score=333.17 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeecc------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceE
Q 006330 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~ 215 (650)
..|+++||+..|.... +.....+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999988886521 011234579999999999999999999999999999999999653 46899
Q ss_pred EEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 216 I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
|.++|. +++++|++.+++.+||.||+.+..... ....++..+.+.++++.+++.+..+.. +..
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788887788899999998765432 123444455677788888887766553 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++. .+.+.||+|++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 467889999999999999
Q ss_pred EecCHHHHHH
Q 006330 376 YFGKASEAMA 385 (650)
Q Consensus 376 ~~G~~~~~~~ 385 (650)
+.|+++++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.4e-40 Score=320.72 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
|+++|++++|. ..++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.+||.++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHH
Confidence 47899999982 11246999999999999999999999999999999999964 3568999999997642 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 5678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||||+.+|++|+|||||+|||+.++..+++.|+++. ++.|||+++|++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999763 4 579999999999998765
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.6e-40 Score=319.27 Aligned_cols=169 Identities=34% Similarity=0.622 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|. ..++++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.+||.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 47899999882 123569999999999999999999999999999999999643 468999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.+++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 356789999999988874 999987 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
No 291
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=323.00 Aligned_cols=220 Identities=25% Similarity=0.456 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
+++++||+++| +.+.+|+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 37899999998 5788999999999999999999999999999999999 5553 46899999999985
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+++.++++.+-|+..+...+||+|-+.|+..... ..-..++++..+++.++.++|.+..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 3677889999999999889999999999853221 2223456777899999999999877754 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
-||+.|+.+.+.++||||.++||-..+..+++.|++++++ |+|||++.||.+. +..++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999976 9999999999875 5678999999999999999999998
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
+.
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 63
No 292
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=339.34 Aligned_cols=230 Identities=26% Similarity=0.486 Sum_probs=200.9
Q ss_pred CCeeEEEEeEEEEEeecccc-c--cccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe
Q 006330 146 LPIYLKFTDVTYKVILKGMT-S--SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~-~--~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 222 (650)
.++.++.+||...|+.++.- + .....++++||+++++||.++|||.||||||||-.+|.+. . +.+|+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL-~--~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-I--PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh-c--CcCceEEECCcc
Confidence 45679999999999876421 1 1235799999999999999999999999999999999964 3 236999999999
Q ss_pred CCh-------hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006330 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (650)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (650)
+.. .+|+++-.||||| .|-|.|||.+-|.-+.....| ..+.+++++++.+.+++.||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 3688999999998 488999999999998876544 578899999999999999997522 25688
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
+++|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.++ |.+-++|+||+. .+-.+||+|+||.+|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 999999999999999999999999999999999999999999999999754 999999999975 477899999999999
Q ss_pred eEEEecCHHHHH
Q 006330 373 SLLYFGKASEAM 384 (650)
Q Consensus 373 ~iv~~G~~~~~~ 384 (650)
+||+.|+.++++
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
No 293
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-40 Score=306.67 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC--C--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S-- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~--~-- 224 (650)
.|+++|+++.| +..++|.||+++.+.||.+.++||||||||||++.|. .+. .+.+|+..+.|... +
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle-~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLE-MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHh-CCCCCeEEecccccccccC
Confidence 47899999998 4567999999999999999999999999999999998 454 34689999987643 2
Q ss_pred ------hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
..+|+.+|+|+|+-.++|++||.||+.-+.. +. ..+++++...++.++++.+.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1578999999999999999999999976432 21 246788888899999999999988875 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-++++|... ...+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999965 356789999999999999999
Q ss_pred CHHH
Q 006330 379 KASE 382 (650)
Q Consensus 379 ~~~~ 382 (650)
+++-
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8754
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-40 Score=368.95 Aligned_cols=215 Identities=23% Similarity=0.426 Sum_probs=179.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|+++.| +.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+
T Consensus 264 ~~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 138999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccC---CcCCCCCCHHHHHHHHHhcc---CCC--C-ccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 006330 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (650)
Q Consensus 226 ---~~~~~i~yV~Q~---~~l~~~lTV~enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (650)
..++.|+||+|+ +.+++.+||+||+.++...+ ... . ......+++++++++.+||. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 235679999998 46888999999998753211 000 0 11223345678999999996 556654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999878999999999975 577899999999999
Q ss_pred eEEEecCH
Q 006330 373 SLLYFGKA 380 (650)
Q Consensus 373 ~iv~~G~~ 380 (650)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
No 295
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=6.4e-41 Score=381.56 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=169.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++||+|+|+.+. ..++++|+|+|+++++||++||+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 3699999999994210 0124699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc-cCccCCCCCHHHHH
Q 006330 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERK 302 (650)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v-g~~~~~~LSGGerq 302 (650)
.+++.++||+|++.+|+. |+++|+. + ...++++.++++.+++.+..+... |-.....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8998841 1 122345677888888765433221 11112579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~-~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|++|||||+++|+||||||||++||+.++..+.+.+. ++...|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998664 45556899999999975 3578999999999999864
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-39 Score=327.60 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=169.3
Q ss_pred EEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEEC--CE--eCC
Q 006330 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~--G~--~~~ 224 (650)
|+++||+++|..+. +.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchh
Confidence 78999999984210 011 2479999999999999999999999999999999999643 458999998 42 432
Q ss_pred h-------hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCC
Q 006330 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (650)
Q Consensus 225 ~-------~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~ 295 (650)
. .. ++.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+. .+. .+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999999865322 12333445678889999999753 243 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4667899998763
No 297
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.5e-40 Score=320.18 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=153.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999864 8999999999999999999999999999999999643 468999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999995 57888999999986420 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999965 57788999999999974
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.6e-40 Score=368.05 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 23569999999999999999999999999999999999653 468999999976532
Q ss_pred -hccCcEEEEccCCcC--C-C-----CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l--~-~-----~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||.+..+.. +..|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 235669999998643 1 1 46888887532 12345688899999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5778999999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988764
No 299
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-39 Score=324.73 Aligned_cols=198 Identities=21% Similarity=0.399 Sum_probs=164.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++|. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 589999999982 122479999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.|+||+|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 49999997531 1121 12333333 2 1 23568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|++++.|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988864
No 300
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-39 Score=324.07 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=167.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-hc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (650)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 48999999998 24569999999999999999999999999999999999543 468999999988642 25
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+.. ++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHH
Confidence 6789999999888888999999988653321 1 123478899999997655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++-++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999988779999999999753 43 3 88877743
No 301
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-39 Score=366.74 Aligned_cols=221 Identities=21% Similarity=0.373 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++++|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCH
Confidence 6999999987621 123569999999999999999999999999999999999653 3358999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (650)
..+++++||+|++ .+++.+||+||+.++...... ........++++.++++.+++.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 3467899999995 588899999999886421110 01223344567889999999963 34544 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++. ++.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999987
Q ss_pred cCHH
Q 006330 378 GKAS 381 (650)
Q Consensus 378 G~~~ 381 (650)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 302
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.1e-39 Score=317.48 Aligned_cols=177 Identities=32% Similarity=0.572 Sum_probs=151.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh------hccCcEEEEccCC--cC
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------~~~~~i~yV~Q~~--~l 240 (650)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999653 468999999998731 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 006330 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (650)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 320 (650)
+ ..||+||+.+..... ....++..++++++++.+||.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 469999999875432 123444556788999999998766654 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999964
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=351.26 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.++++|+++.|.. +..+++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 5889999888721 123579999999999999999999999999999999999653 5689999999752
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~ 308 (650)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445667789999998854322 123444556678899999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHH
Q 006330 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f 387 (650)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++++..-|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 577889999999999999999999887544
No 304
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=360.94 Aligned_cols=214 Identities=23% Similarity=0.416 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 26999999999999999999999999999999999653 458999999988742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCC---CccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN---TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (650)
..++.+|||+|++ .+++.+||+||+.++....... ....++.+++++++++.+||. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2456799999996 5788899999998753211100 022334456788999999995 455554 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5788999999999999999
Q ss_pred ecCHHHH
Q 006330 377 FGKASEA 383 (650)
Q Consensus 377 ~G~~~~~ 383 (650)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.7e-39 Score=324.17 Aligned_cols=197 Identities=27% Similarity=0.426 Sum_probs=163.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCC--CCCHHHHHHHHHh
Q 006330 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (650)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~--~lTV~enl~~~~~ 255 (650)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++. ..+++++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG-KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch-HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4789999999999999999999999999643 46899999999864 34678999999987632 4799999987532
Q ss_pred ccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 006330 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (650)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i 334 (650)
.... .........+++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998666554 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 335 ~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999975 477899999999 89999999988764
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.6e-39 Score=365.13 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||+|+|+ +++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||+++.+
T Consensus 322 ~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCCH
Confidence 699999999983 234699999999999999999999999999999999985 43 458999999999863
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc--cCCCCCHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGERK 302 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGerq 302 (650)
.++++|+||+|++.+|+. |++|| + + . ..++.++++++.+++.+..+ .++. ....|||||||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~q 456 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKK 456 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHH
Confidence 568899999999999975 88887 1 1 1 22345778888888875433 2221 12579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .++|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999987653 5899999999975 4678999999999999877
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.3e-39 Score=315.85 Aligned_cols=175 Identities=33% Similarity=0.584 Sum_probs=149.9
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----h
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (650)
+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHH
Confidence 478999988 23569999999999999999999999999999999999643 568999999998742 3
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.++|++| +++.+|+.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4455666554443 246899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ ++|+|+++|++. ++.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 899999999975 466889999999999998754
No 308
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-39 Score=361.86 Aligned_cols=215 Identities=20% Similarity=0.371 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCH
Confidence 5888888631 48999999999999999999999999999999999653 468999999988642
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccC-CCC--ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (650)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.++++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2357899999996 48888999999987542110 000 12233345688899999994 555654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++.|.|||++|||+. ++.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999965 5788999999999999999
Q ss_pred ecCHHHH
Q 006330 377 FGKASEA 383 (650)
Q Consensus 377 ~G~~~~~ 383 (650)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9988653
No 309
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-40 Score=411.66 Aligned_cols=335 Identities=19% Similarity=0.179 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhchhhhHh
Q 006330 13 TKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALS 92 (650)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 92 (650)
+.++.-.+.++...|.+.+.++||.++.+....+++.+.........++.....+......... .+-+.-++.|+.++
T Consensus 470 ~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fg~~~v 547 (1495)
T PLN03232 470 EGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--PVVVTLVSFGVFVL 547 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3344455666777888889999999999887777776533332222221111100000000000 00111134566555
Q ss_pred hhhhhhhhhhhccccC----CCCccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEE
Q 006330 93 RASSASLGLSFSFTGF----TMPPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT 156 (650)
Q Consensus 93 ~~~~~~~g~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs 156 (650)
..+..+.|.++++..+ ..|... .+..|.....+.++.... ... ........|+++|++
T Consensus 548 ~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-----~~~-~~~~~~~~I~~~~vs 621 (1495)
T PLN03232 548 LGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-----QNP-PLQPGAPAISIKNGY 621 (1495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-----ccC-CcCCCCCcEEEEeeE
Confidence 5555566666655321 111111 111111111111111000 000 000112359999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEcc
Q 006330 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 236 (650)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q 236 (650)
|+|+. ..++++|+|+|++|++||.++|+||||||||||+++|.|.+ ++ .+|.+. .+++.|+||+|
T Consensus 622 F~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~-~~G~i~--------~~~~~Iayv~Q 686 (1495)
T PLN03232 622 FSWDS-----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SH-AETSSV--------VIRGSVAYVPQ 686 (1495)
T ss_pred EEcCC-----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cc-cCCCEE--------EecCcEEEEcC
Confidence 99842 12467999999999999999999999999999999999854 33 466552 34678999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
++.+|+. ||+|||.|+.. .++++ .+++++.. .|+++.+|.+|+++ ..||||||||++||||
T Consensus 687 ~p~Lf~g-TIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 687 VSWIFNA-TVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARA 754 (1495)
T ss_pred ccccccc-cHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHH
Confidence 9999975 99999999742 22222 22222222 45788899999875 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~-L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
++++|+|+|||||||+||+.++..+++. ++.+. +++|+|++||+++ ....||+|++|++|++++.|+++++++
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999988765 55443 5899999999986 367899999999999999999999874
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=309.58 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=198.9
Q ss_pred eEEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.|+++|+++++ .+ +.||++||++|++||+.|||||||||||||.++|+|+-.-..++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 58999999987 34 58999999999999999999999999999999999964223468999999999852
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGer 301 (650)
..|.-|...+|.|.=+|..|+.+.|..+...+....-...+..+.+++.++.+++++ ..++.+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 456778999999999999999999998775432211113455677888999999986 4455443 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhc--CEEEEEeCCeEEEecC
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~--D~iivL~~G~iv~~G~ 379 (650)
||..|+..++.+|++.|||||-||||..+-..|-+.+++++..|.++++|||.. ++.++. |+|.||.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999984 466766 9999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 006330 380 ASEAMAYFSSIGCSP 394 (650)
Q Consensus 380 ~~~~~~~f~~~g~~~ 394 (650)
+ ++..+++..||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999865
No 311
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.6e-39 Score=318.63 Aligned_cols=194 Identities=27% Similarity=0.440 Sum_probs=152.6
Q ss_pred EEEEeEEEEEeeccccccc--cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
|+++||+++|.. .. .+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-------
Confidence 478999999821 11 1369999999999999999999999999999999999543 5689999999
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGe 300 (650)
+|+|++|++.+++ .||+||+.+... ...+. ..+.++.+++. .+.++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999885 699999987532 11111 12222222221 12233332 2357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++.. +.. ||++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 567666668999999999753 444 99999999985
No 312
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=326.86 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--------hccCcEEEEccCCcCCCCCC
Q 006330 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~Q~~~l~~~lT 245 (650)
=+++|..+.-.++||-|+||||||||+|+|+|... +.+|.|.+||+-+.+ ..+|+|||||||-.|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 35788888767999999999999999999999654 468999999986532 24788999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (650)
|+.||.|+.... .....+++++.||++|..+. ++..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 34457788899999988875 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||-.-..+++-.|++|.++ ...|+++||.+ .|+.+++|+|++|++|++...|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999976 78999999996 57999999999999999999999999863
No 313
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-38 Score=308.22 Aligned_cols=167 Identities=37% Similarity=0.638 Sum_probs=147.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++|.. .++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 478999998821 12369999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.+++.++|++|++.+++ .|++||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34678999999998886 5999887 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 555 99999999985
No 314
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-38 Score=317.93 Aligned_cols=200 Identities=26% Similarity=0.434 Sum_probs=158.3
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh-----
Q 006330 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (650)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (650)
.+.|+.|.|+ +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 458999999987632
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCC
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRG 295 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~ 295 (650)
..++.++|++|++.++ ..|++||+.+... ...+ ...++++.+++.+. .++... ..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCc
Confidence 2346799999999888 4699999987531 1111 12334444554322 122222 34678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~--~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|+++|++.. + ..||++++|++|.
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 677666668999999999764 4 5799999999884
No 315
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.5e-38 Score=356.90 Aligned_cols=214 Identities=22% Similarity=0.310 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|++. .+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCH
Confidence 588888872 15999999999999999999999999999999999653 458999999998742
Q ss_pred --hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHH
Q 006330 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (650)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGG 299 (650)
..++.|+||+|++ .+++.+||.||+........+........+++++++++.+||+ +..++. +..||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999984 4788899999996431111110011222345688999999996 556654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999975 5788999999999999999998
Q ss_pred HHHH
Q 006330 380 ASEA 383 (650)
Q Consensus 380 ~~~~ 383 (650)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7653
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=307.36 Aligned_cols=204 Identities=28% Similarity=0.494 Sum_probs=174.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~ 225 (650)
++++++.|.- .+.++|+|+||++++||.++|.||||||||||+|+++. +. ++++|.+++.|++++ +
T Consensus 4 le~kq~~y~a--------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 4 LELKQVGYLA--------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred hHHHHHHhhc--------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChH
Confidence 4556665532 56789999999999999999999999999999999996 44 356899999999986 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.+|++|+||.|.|.||+. ||+||+.|....+..+ ...+++.++|+.+++++..- +..+..||||||||++
T Consensus 74 a~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriA 143 (223)
T COG4619 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSIL----TKNITELSGGEKQRIA 143 (223)
T ss_pred HHHHHHHHHHcCcccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHH
Confidence 689999999999999986 9999999987765322 13456778899999976432 2345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|+|.|..-|+||+||||||+||+.+++.|-++|.++. .+.+.++.+||++.. ..+.||+++-+..|++
T Consensus 144 liR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999999999999999999999987 568999999999764 6789999999999876
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.6e-38 Score=336.21 Aligned_cols=187 Identities=31% Similarity=0.524 Sum_probs=163.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHH
Q 006330 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (650)
Q Consensus 188 IvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~ 265 (650)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+|+.+||+||+.|+...+ ..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999653 568999999998743 34678999999999999999999999986432 13344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 006330 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (650)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~- 344 (650)
+.+++++++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 5566788999999998766654 4689999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 345 g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|+|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5788999999999999999999998753
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.8e-38 Score=303.02 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=141.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (650)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 4789999998 23579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999965 4667899999999999875
No 319
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-38 Score=311.58 Aligned_cols=191 Identities=21% Similarity=0.330 Sum_probs=159.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|++++| +++.+++ +||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 999999999999999999999999999999643 5689999999987543345
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998865321 0 234567788889987655543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEE
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~i 366 (650)
++.+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|++.. ...+|-|
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999999999999999999999998777779999999999764 4556755
No 320
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=338.26 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC----
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (650)
.++++|+++.| +...+++||||+|++||+.||+|.||||||||+++|.|. +. |++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999995 44 45899999999874
Q ss_pred -hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
+..+..||+|.|++.|+|++||.|||.++...........+..++++.++.+.+||+-..|..+ ..||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2457789999999999999999999999875322223567778889999999999987666654 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||+|||.+. |+.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999975 6899999999999999876554
No 321
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-39 Score=406.32 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc-eEEEECCEeCChhc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~-G~I~~~G~~~~~~~ 227 (650)
.|+++|++|+|+. ..++++|+|+|++|++||+++|+||||||||||+++|.|.+. +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------
Confidence 5999999999842 124679999999999999999999999999999999999653 457 89974
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGe 300 (650)
+++|+||+|++.+|+. ||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|+++ ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 4579999999999975 99999999742 2222 223333322 35778899999775 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||+||||++++|+|+|||||||+||+.++..+.+ .++.+. +|+|+|++||++. ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999988864 566554 5899999999975 467899999999999999999
Q ss_pred HHHHHH
Q 006330 380 ASEAMA 385 (650)
Q Consensus 380 ~~~~~~ 385 (650)
++++++
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-37 Score=325.66 Aligned_cols=204 Identities=29% Similarity=0.440 Sum_probs=163.0
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh
Q 006330 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (650)
....|+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-----
Confidence 3456999999974 2469999999999999999999999999999999999653 4689999998
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSG 298 (650)
.|+|++|++.+++. ||+||+.++... ... ++.+.++.+++. ...++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 111 112223333332 22233332 23468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L-~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999998865 5554 47899999999764 4 67999999999999999
Q ss_pred cCHHHHHH
Q 006330 378 GKASEAMA 385 (650)
Q Consensus 378 G~~~~~~~ 385 (650)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=360.64 Aligned_cols=220 Identities=27% Similarity=0.470 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 69999999998311 123579999999999999999999999999999999999653 568999999998753
Q ss_pred -h----ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 006330 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 -~----~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 300 (650)
+ .++.++|++|++.+|+.+|+.||+.+..... ....++.++++.++++.+||.+..|+. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 2 1467999999999999999999999865422 223455667889999999998766654 45899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
+||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|+|+++|++. ..+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 006330 381 SEAM 384 (650)
Q Consensus 381 ~~~~ 384 (650)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8764
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.6e-38 Score=302.14 Aligned_cols=163 Identities=29% Similarity=0.526 Sum_probs=143.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|++++|+ .++++|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 47899999882 12569999999999999999999999999999999999653 46899999873 5
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
+++|++|++.++ .+||+||+.+. .+..||||||||++||||
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999999752 124799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
|+.+|++|+|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999876 689999999975 35789999999875
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=351.64 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=173.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|. .
T Consensus 2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-------~ 64 (530)
T PRK15064 2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN-------E 64 (530)
T ss_pred EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------C
Confidence 7899999998 34579999999999999999999999999999999999653 45899999873 3
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHh-c-----------cCCCC-----------------ccHHHHHHHHHHHHHHcCC
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELGL 280 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL 280 (650)
.|+|++|++.+++.+||+||+.++.. . ..+.. ....+.++++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999987531 0 00000 0001224568889999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 006330 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (650)
Q Consensus 281 ~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~ 360 (650)
++..+. ..+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|++ .|.|||+++|++. .+.
T Consensus 145 ~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~ 216 (530)
T PRK15064 145 PEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN 216 (530)
T ss_pred ChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence 753321 23468999999999999999999999999999999999999999999863 5899999999975 477
Q ss_pred hhcCEEEEEeCCeE-EEecCHHHHHH
Q 006330 361 HKFDKLILLGKGSL-LYFGKASEAMA 385 (650)
Q Consensus 361 ~~~D~iivL~~G~i-v~~G~~~~~~~ 385 (650)
+.||+|++|++|++ ++.|++++..+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 89999999999999 58999887653
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-37 Score=354.21 Aligned_cols=210 Identities=28% Similarity=0.382 Sum_probs=172.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
+.|+++||+++|. +++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 4799999999981 14679999999999999999999999999999999999653 46899999752
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhc---------------cCCCC-cc-----------------HHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPNT-LT-----------------KQQKEKRAIDV 274 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~---------------~~~~~-~~-----------------~~~~~~~v~~~ 274 (650)
..||||+|++.+++.+||.||+.++... ..+.. .. ..+..+++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875320 00000 00 00123567788
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 006330 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (650)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~ 354 (650)
++.+||.. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 34689999999999999999999999999999999999999999999886 3599999999
Q ss_pred CChHHHhhcCEEEEEeCCeEE-EecCHHHH
Q 006330 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 355 ~~~~i~~~~D~iivL~~G~iv-~~G~~~~~ 383 (650)
+. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 75 577889999999999986 88987764
No 327
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.4e-39 Score=372.54 Aligned_cols=338 Identities=16% Similarity=0.168 Sum_probs=219.4
Q ss_pred hHhHHHHHHHHHHHHHHhhcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeeccccc--ceeechh
Q 006330 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (650)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (650)
.++.++.+++.++..+..+|.....++|++|+++..+.+++.++.........+.....+.+......... ...+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999987776655433211111111000000000 0001111
Q ss_pred chhhhHhh-h----hhhhhhhhhc-cccC-------------------CCCccccccCCCCCCCCCcccccccc----CC
Q 006330 86 SSGAALSR-A----SSASLGLSFS-FTGF-------------------TMPPDEIADSKPFSDDDIPEDIEAGT----RE 136 (650)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (650)
..|..... . +..+.|.+.+ |..+ ++........|.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221211 1 2222222221 1110 11111111122222222111111000 00
Q ss_pred CC-----------C----CCCCCCCCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 006330 137 RP-----------K----FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (650)
Q Consensus 137 ~~-----------~----~~~~~~~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~ 201 (650)
.+ . ..........|+++||++.|+ +++++|+|+||+|++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 00 0 000011123599999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006330 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (650)
Q Consensus 202 ~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (650)
+|+|.. ++.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....++++.++++.+++.
T Consensus 497 lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCH
Confidence 999954 34589998864 4679999999999987 9999998864211000 0001234567788888887
Q ss_pred cccc------ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 006330 282 RCQD------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (650)
Q Consensus 282 ~~~~------t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~ 355 (650)
+..+ +..+ ....||||||||++|||||+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|++
T Consensus 565 ~~~~~~~g~~~~~~--~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILEREGGWSAVQD--WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRK 639 (659)
T ss_pred HHHhhcCCcccccc--cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCch
Confidence 6443 3322 2467999999999999999999999999999999999999999998876 389999999997
Q ss_pred ChHHHhhcCEEEEEeC
Q 006330 356 SSRLFHKFDKLILLGK 371 (650)
Q Consensus 356 ~~~i~~~~D~iivL~~ 371 (650)
+. .+.||++++|+.
T Consensus 640 ~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SL--WKYHEYLLYMDG 653 (659)
T ss_pred HH--HHhCCEEEEEeC
Confidence 63 588999999974
No 328
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.61 Aligned_cols=215 Identities=20% Similarity=0.369 Sum_probs=175.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|+++.+ +++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 369999998752 359999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccCC---cCCCCCCHHHHHHHHHh--ccCCCC-ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 006330 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--LRLPNT-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (650)
..++.++|++|++ .+|+.+|+.+|+.+... ...... ......++.+.++++.+++. +..++ .+..
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888898887433210 000001 12233456778899999985 33444 4568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCH
Q 006330 376 YFGKA 380 (650)
Q Consensus 376 ~~G~~ 380 (650)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87755
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=310.73 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (650)
..|+++||+++| .+|+||+|||++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|+...
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999998 5788999999999999999999999999999999999943 455899999999864
Q ss_pred --hhccCcEEEEccC--CcCCCCCCHHHHHHHHHh--ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 006330 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (650)
Q Consensus 225 --~~~~~~i~yV~Q~--~~l~~~lTV~enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (650)
.++|++||||.-+ ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+..|..+ ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3679999999854 344556788888763321 111111234556778899999999998887665 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 299 GerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
||||||-|||||+.+|++||||||++|||...++.+++.|.+++.. +.++|+|||+.. ++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 6888899999999999999
Q ss_pred ecC
Q 006330 377 FGK 379 (650)
Q Consensus 377 ~G~ 379 (650)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.56 Aligned_cols=215 Identities=21% Similarity=0.372 Sum_probs=172.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. .++.+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 469999999998 2456999999999999999999999999999999999953 22258999999987531
Q ss_pred ---hccCcEEEEccCCcCCC--CCCHHHHHHHHHhc--cCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 006330 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~--~lTV~enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (650)
..+++|+|++|++.++. ..|+++++.++... ....... ...+++++++++.+||.+ ..++. +..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 24567999999976543 24777776544211 0001111 233457889999999986 55554 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHh-hcCEEEEEeCCeEE
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~~H~~~~~i~~-~~D~iivL~~G~iv 375 (650)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++++ .|||++||++. ++.+ .||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceE
Confidence 999999999999999999999999999999999999999999998775 47999999975 4555 58999999999987
Q ss_pred Eec
Q 006330 376 YFG 378 (650)
Q Consensus 376 ~~G 378 (650)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-37 Score=348.09 Aligned_cols=204 Identities=23% Similarity=0.366 Sum_probs=172.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 34569999999999999999999999999999999999643 45899999873
Q ss_pred cCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 006330 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 228 ~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+.+|||+|++. +++.+||+||+.+.. .. . ..++++.++++.+|+. +..+. .+..|||||||||
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 0 1235678899999984 44454 3568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE-EecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv-~~G~~~~~ 383 (650)
+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||++. .+.+.||+|++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999876 359999999975 577889999999999998 88988876
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
++
T Consensus 524 ~~ 525 (530)
T PRK15064 524 LR 525 (530)
T ss_pred HH
Confidence 43
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.4e-37 Score=348.58 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 689999999982 14579999999999999999999999999999999999653 4689999975 2
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhc-cC-----------CCCccHH---------------------HHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (650)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000010 0123566777
Q ss_pred HHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 006330 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (650)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~ 355 (650)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7888853 343 35689999999999999999999999999999999999999999999875 35999999996
Q ss_pred ChHHHhhcCEEEEEeCCeEE-EecCHHHHHH
Q 006330 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (650)
Q Consensus 356 ~~~i~~~~D~iivL~~G~iv-~~G~~~~~~~ 385 (650)
. .+...||+|++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 577889999999999975 7898876543
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.8e-37 Score=308.68 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=159.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEE-ECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 006330 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (650)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~en 249 (650)
.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999643 5689997 777543 13356778899999999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006330 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (650)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (650)
+.+...... ...++.. +.+.+.++|++..++. ++.||||||||++|||||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 2333456777666654 3589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHHh
Q 006330 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (650)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~~ 389 (650)
++..+.+.|.+..+ ++|+|+++|++. .+.+.||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866544 578999999976 46678999999999999999999999887664
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-37 Score=310.91 Aligned_cols=194 Identities=26% Similarity=0.446 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
.++++|+++.|..+.. .......+++||||+|++||+++|||+||||||||-|+|.|. .+ +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 5899999999875431 111124799999999999999999999999999999999974 43 46899999999864211
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
.++..+++.++++.+||+.. ...+++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHH
Confidence 33466789999999998642 22467899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
|||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||++ .+...+|||.||+.|+||+.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 999999999976 4778899999999999999999999863
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-37 Score=319.86 Aligned_cols=227 Identities=26% Similarity=0.454 Sum_probs=195.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cceEEEECCEeCC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~- 224 (650)
.|+++|++..+... .+...++++|||+|++||.+||||.||||||-..+.++|.+..+. -+|+|.|+|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999998543 356789999999999999999999999999999999998775532 4799999999873
Q ss_pred ---hhc---c-CcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 225 ---KSL---K-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 225 ---~~~---~-~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
+.+ | .+|+.+||+| .|.|-.|+...|.-..++. ..+++++.++++.++++..|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 122 2 4799999998 4777778888887665543 3567888899999999999998755432 568899
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
|||||||||.||+||+.+|++||.||||++||..-+.+|+++|++|.++ |..+++||||+. .+-+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999755 999999999976 47788999999999999
Q ss_pred EEecCHHHHH
Q 006330 375 LYFGKASEAM 384 (650)
Q Consensus 375 v~~G~~~~~~ 384 (650)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999998875
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-36 Score=311.60 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=155.4
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCC
Q 006330 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (650)
+.++|++++++ +||+++|+||||||||||+++|+|... +.+|+|.++|. .|+|++|++..+..+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36777877776 799999999999999999999999653 46899999985 5999999987766789
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (650)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532111 0 122356788899998766654 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEE--EecCHHHH
Q 006330 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv--~~G~~~~~ 383 (650)
||+.++..+.+.|++++++ |+|||+++|++. .+..+||+|++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999764 899999999965 567789999999765433 44555553
No 337
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-37 Score=370.97 Aligned_cols=336 Identities=23% Similarity=0.308 Sum_probs=230.4
Q ss_pred hcCCCccccccccCCCccchhhhhhhhhhhcCCCccccccccceeeeecccccceeechhc--hhhhHh---hhh----h
Q 006330 26 FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS--SGAALS---RAS----S 96 (650)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~---~~~----~ 96 (650)
.|++....|||||+.+..-.+++..++..-.+.-+. .... .|-+...+|++... ...++. ..+ .
T Consensus 1001 ~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~-~~~a------~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~ 1073 (1381)
T KOG0054|consen 1001 SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFL-SISA------NRWLAVRLELLGNLVVLIAALFAVLLPSGLISP 1073 (1381)
T ss_pred HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 455566789999999999999999888765544331 1111 12233455554321 111111 101 1
Q ss_pred hhhhhhhcccc--------CCCCcccc-----ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEeecc
Q 006330 97 ASLGLSFSFTG--------FTMPPDEI-----ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKG 163 (650)
Q Consensus 97 ~~~g~~~~~~~--------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~~~ 163 (650)
-..|+..+++. ......++ +-+|..++.++++. .........++..-+....|+|+|++.+|.
T Consensus 1074 g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr--- 1149 (1381)
T KOG0054|consen 1074 GLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYR--- 1149 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeC---
Confidence 23444444432 00011111 11233334443322 000000011111112345799999999993
Q ss_pred ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEccCCc
Q 006330 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239 (650)
Q Consensus 164 ~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~ 239 (650)
.+...||||||++|+|||.+||||..|||||||+++|- |+.++ .+|+|.+||.|+.+ ++|++++.+||||.
T Consensus 1150 ---p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv 1224 (1381)
T KOG0054|consen 1150 ---PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQDPV 1224 (1381)
T ss_pred ---CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCCCc
Confidence 23468999999999999999999999999999999999 56554 58999999999974 78999999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 006330 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (650)
Q Consensus 240 l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 319 (650)
+|.+ |||.||.=.... .++.++++-.+....+.++ .++...|+.+.+. ..++|-||||-+++||||+++++||+|
T Consensus 1225 LFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~eg-G~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1225 LFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSEG-GENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred eecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecCC-CccCChHHHHHHHHHHHHhccCCEEEE
Confidence 9976 999999632110 1111222223334444554 3455677777644 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
||+|++.|+++-..|.+.||+--+ ++|||.|.|++.+ + --+|||+||++|+++++|+|.++++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999998543 8999999999886 4 4589999999999999999999974
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.3e-36 Score=340.67 Aligned_cols=205 Identities=22% Similarity=0.373 Sum_probs=168.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 469999999998 34579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 006330 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..||||+|++ .+++.+||+||+.++..... .... ...+.++++.+|+.+ ..+.. +..|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 2599999996 78888999999998643211 1111 123456889999963 34443 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-CeEE-EecCHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-G~iv-~~G~~~~~ 383 (650)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999986 7876 56665543
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.5e-35 Score=337.39 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=167.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 369999999998 34579999999999999999999999999999999999653 46899999542
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 006330 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..|||++|++ .+++.+||.||+.++..... .... +.++.++++.+|+.+ ..+.. +..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 47888999999998643211 1111 223557899999963 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-CeEE-EecCHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-G~iv-~~G~~~~ 382 (650)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.++||+|++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999987 5876 5676654
No 340
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=302.86 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=180.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---hhccCcEEEEc-cCCcCCCCCC
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHLT 245 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~lT 245 (650)
.++++||||+|++|++++++|||||||||+||+|+|.+. +++|.|.++|.+.- +++-+++++|+ |...+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 469999999999999999999999999999999999765 56899999998653 24456788776 4456666667
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsg 325 (650)
+.|.+......+ +++.++-.++.+.+.+.|+|+...+.+ ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877654433 467788888999999999998777765 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHHHHH
Q 006330 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~~f~ 388 (650)
||..++..|.+.|++..+ ++.||+.+||+.+ .+.++||||++|+.|+++|.|+.+++.+-|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999975 4899999999976 4889999999999999999999999987764
No 341
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=288.88 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC-EeCCh-
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~- 225 (650)
..|+++||++++ +.-.+|+|+||++.|||+-+|+|||||||||++++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 4667999999999999999999999999999999999954 45689999999 77753
Q ss_pred ----hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
-.|..||-=||.|..|+.+||+|||..+.....+- .-...+.+.+++++|...||.+.++... ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 23667999999999999999999999876432110 0112345678999999999998887654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|-||||++.|++-++.+|++|+||||++|+--....+.-++|+.++. +++|+++-||+. .+.+++|+|-||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999988888999999999986 689999999965 5788999999999999999
Q ss_pred ecCHHHHH
Q 006330 377 FGKASEAM 384 (650)
Q Consensus 377 ~G~~~~~~ 384 (650)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.9e-35 Score=337.23 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..++++|+++.| ++ ..|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 469999999988 22 25999999999999999999999999999999999653 468999986
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
..++|++|+..+++.+||+||+.++... ... ...+.++++.++|.+..++. +..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 22467899999998766654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++||+. .+..+||||++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999864 899999999965 4778899999996 58877776
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.8e-36 Score=307.76 Aligned_cols=199 Identities=26% Similarity=0.365 Sum_probs=162.7
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEE-----------ECCEe
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (650)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+|+|+|... +++|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCch
Confidence 6778772 1236999999 599999999999999999999999999643 4589996 88887
Q ss_pred CCh---hcc---CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 223 ~~~---~~~---~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
+.. ..+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 643 112 247999999888874 8888887642 1223345678899999998765543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++++|||+++|++. .+.+.||+|++|+ |++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 4667899999994 66665
Q ss_pred ec
Q 006330 377 FG 378 (650)
Q Consensus 377 ~G 378 (650)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=339.76 Aligned_cols=203 Identities=29% Similarity=0.439 Sum_probs=169.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 34679999999999999999999999999999999999653 56899999742
Q ss_pred cCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH
Q 006330 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 228 ~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv 304 (650)
.++||++|+. .+.+..|+.+++... . ......++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 1 1123456788999999963 44544 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE-EecCHHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv-~~G~~~~~ 383 (650)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.++||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999965 577899999999999997 88998876
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.6e-35 Score=367.16 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.++++|++|.|. ..++++|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999983 123579999999999999999999999999999999999643 4689999997
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH---HHHHcC-CCccccccccCccCCCCCHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
+|+||+|++.+++ .||+|||.|+.. ..++..+ ++.+ +.+.++ ++++.+|.+|.. ...||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQ-QVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHH-HHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999985 699999998632 1222211 1211 122232 356678888865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l--~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
+||||++++|+|++||||||+||+.++..+.+.+.+. ..+++|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2348999999999764 46699999999999999999999
Q ss_pred HHH
Q 006330 383 AMA 385 (650)
Q Consensus 383 ~~~ 385 (650)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.4e-35 Score=275.73 Aligned_cols=144 Identities=33% Similarity=0.561 Sum_probs=130.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+ +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 4789999988 23469999999999999999999999999999999999543 56899999985 4
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
.++|++| ||+||+||++||||
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6999998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999886 479999999965 4667899999999985
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.9e-35 Score=335.86 Aligned_cols=205 Identities=26% Similarity=0.437 Sum_probs=168.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 369999999998 34579999999999999999999999999999999999653 56899998 4332
Q ss_pred cCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 006330 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
.|||++|++ .+++.+||.||+.++.... ... .....+.++++.+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1234577889999985 344544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe-CCeEEE-ecCHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLY-FGKASEA 383 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~-~G~iv~-~G~~~~~ 383 (650)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||+|++|+ +|++.. .|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999964 5778899999998 799854 5666553
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-34 Score=285.96 Aligned_cols=222 Identities=22% Similarity=0.319 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeecc----------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 006330 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~ 212 (650)
.|+++||+..|+... ........+|+||||++++||.++|+|+||||||||||+|+|.+. |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 578889988876531 111234579999999999999999999999999999999999543 56
Q ss_pred ceEEEECCEeCChhccCcEEEEcc-CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006330 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (650)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yV~Q-~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (650)
+|+|.++|+- +++.. .--+-|.+|.+||+.+-..+. .+++++.+++++++++--+|.+..|.++
T Consensus 81 ~G~v~v~G~v---------~~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKV---------APLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceE---------ehhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 8999999974 22222 123456799999999876543 4678889999999999889998888765
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+.+|-||+=|++.|.|...+|+|||+||-.+-.|+.-+++-.+.++++.++++|||+++|++. .+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 789999999999999999999999999999999999999999999999888899999999975 58899999999999
Q ss_pred CeEEEecCHHHHHHHHHhc
Q 006330 372 GSLLYFGKASEAMAYFSSI 390 (650)
Q Consensus 372 G~iv~~G~~~~~~~~f~~~ 390 (650)
|++.+.|++++++++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999998764
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=284.42 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=167.7
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChh----ccCcEEEEccCCc--CC
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV--LF 241 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yV~Q~~~--l~ 241 (650)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++. ....++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46889999999999999999999999999999999999764 5699999999998742 2245788999984 68
Q ss_pred CCCCHHHHHHHHHhccCCCCccH---HHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 006330 242 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (650)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~i 316 (650)
+.|||.||+..+..-...+.+.. ..+.+...+-+..+ ||++..++++| -|||||||-+++++|.+..|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764311122222 22333344445544 66677777665 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
|+|||-|++|||.++..|++.-.++.++ +.|.+||||.+. ++..+-+|.++|++|+||.+=
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998754 789999999975 477899999999999999763
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=333.07 Aligned_cols=207 Identities=28% Similarity=0.442 Sum_probs=162.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|... +++|+|.++|..
T Consensus 2 i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------- 64 (638)
T PRK10636 2 IVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------- 64 (638)
T ss_pred EEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC-------
Confidence 7899999998 45679999999999999999999999999999999999543 468999998842
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHh--------c-----cCC-----------CCccHHHHHHHHHHHHHHcCCC-ccc
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAAL--------L-----RLP-----------NTLTKQQKEKRAIDVINELGLE-RCQ 284 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~--------~-----~~~-----------~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (650)
.++|++|++..+. .|+.+++.-... . ... ......+...++.++++.+|+. +..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~ 143 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL 143 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh
Confidence 3899998754432 466555431100 0 000 0000012345788899999996 445
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcC
Q 006330 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (650)
Q Consensus 285 ~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D 364 (650)
+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||+.. .+.+.||
T Consensus 144 ~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d 214 (638)
T PRK10636 144 ERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVD 214 (638)
T ss_pred cCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcC
Confidence 554 4689999999999999999999999999999999999999999998875 569999999965 5778899
Q ss_pred EEEEEeCCeEE-EecCHHHH
Q 006330 365 KLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 365 ~iivL~~G~iv-~~G~~~~~ 383 (650)
+|++|++|+++ |.|+.+..
T Consensus 215 ~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 215 KIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEEEeCCEEEEecCCHHHH
Confidence 99999999996 67876543
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.8e-34 Score=332.40 Aligned_cols=207 Identities=21% Similarity=0.368 Sum_probs=166.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++||++.|. +++.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4699999999982 23469999999999999999999999999999999999653 56899998752
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
.+|||++|++. +.+++.+|..+......+ ... .+++.++++.+|+.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 46999999862 345676665432211111 111 345778999999973 3343 356899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE-EecCHHHHHH
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv-~~G~~~~~~~ 385 (650)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+...||++++|++|+++ +.|++++..+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999998888764 34 9999999965 577889999999999998 7888876544
Q ss_pred H
Q 006330 386 Y 386 (650)
Q Consensus 386 ~ 386 (650)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.9e-34 Score=281.14 Aligned_cols=157 Identities=26% Similarity=0.384 Sum_probs=131.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
.+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH------------
Confidence 5679999999999999999999999999999999963 379999998732 222445888887
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCC
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSG 325 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPTsg 325 (650)
.++++.++|... .+. .++.||||||||++|||+|+.+ |+++||||||++
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 135667777642 343 3568999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
||+.++..+.+.|+++.+.|+|||++||++.. .+.||++++|++|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~--~~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV--LSSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEECCCCC
Confidence 99999999999999998779999999999753 468999999966443
No 353
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-34 Score=280.63 Aligned_cols=152 Identities=27% Similarity=0.425 Sum_probs=132.5
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEE
Q 006330 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (650)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (650)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 356789985 9999999999999999999999999999653 468999999963 78
Q ss_pred EEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 006330 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (650)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~ 312 (650)
|++|++. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhhcCEEEEEeCCeEEEe--cCH
Q 006330 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKA 380 (650)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~--G~~ 380 (650)
+|++++|||||++||+.++..+.+.++++++++ .|||+++|++. .+.+.||++++|+++-.++. |.|
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~ 158 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQP 158 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCC
Confidence 999999999999999999999999999998765 89999999965 46678999999998766544 544
No 354
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=267.53 Aligned_cols=191 Identities=31% Similarity=0.500 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcceEEEECCEeCC--h
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS--K 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~--~ 225 (650)
.+.++||+.+. ++.-.|-|+|++|.+||++-||||||||||||+..+.|-+... ..+|++++|+++++ +
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 46789998764 4567999999999999999999999999999999999976432 36899999999886 3
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
..+|++|+++||+.+||+++|.+||.|+ +|..+..+.++..++..+++.||....+. .+..||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 5678999999999999999999999997 45566667788889999999999876664 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCC
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~~H~~~ 356 (650)
+-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||..
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999999999999999998887654 445999999999954
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.3e-34 Score=354.54 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~en 249 (650)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+|+. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 4689999998 39999999999975 99999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006330 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (650)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (650)
|.|+.... ........+....++.++.+ +++.+|.+|.. ...|||||||||+||||++.+|+|+||||||+|||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874210 00000000111122333333 45567778765 4679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 330 s~~~i~~~-L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999974 66665 48999999999764 45699999999999999999998863
No 356
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=342.37 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=201.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|||||||||++|+|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 36889999998832 112 999999999999999999999999999999999954 3568999999998853
Q ss_pred ---hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 006330 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (650)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq 302 (650)
+.++.+||+||+|.+++.+|.+|++.+.++++ .++..+.++.++..++.+||.+..|+.+ +.+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 3556667777999999999999998875 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
|+++|.||+.+|++++|||||+|+||.+++.++++++++.+.|+.||++||.. +|...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999995 57889999999999999999999999
Q ss_pred HHHHHHh
Q 006330 383 AMAYFSS 389 (650)
Q Consensus 383 ~~~~f~~ 389 (650)
+..+|..
T Consensus 785 LKsrfG~ 791 (885)
T KOG0059|consen 785 LKSRYGS 791 (885)
T ss_pred HHhhcCC
Confidence 9988763
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.2e-34 Score=327.42 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=161.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|... +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 34679999999999999999999999999999999999543 468999998732
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHH------------------------------hcc--CCCCccHHHHHHHHHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAA------------------------------LLR--LPNTLTKQQKEKRAIDVIN 276 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~ 276 (650)
.++|++|++......+|.+++..+. ... .. .....+...++.++++
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 144 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLA 144 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHH
Confidence 2678887654333346666542110 000 00 0000123456888999
Q ss_pred HcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 277 ~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
.+|+.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||++.
T Consensus 145 ~lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~ 214 (635)
T PRK11147 145 QLGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS 214 (635)
T ss_pred hCCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH
Confidence 999863 33 45689999999999999999999999999999999999999999999887 359999999965
Q ss_pred hHHHhhcCEEEEEeCCeEE-EecCHHHH
Q 006330 357 SRLFHKFDKLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 357 ~~i~~~~D~iivL~~G~iv-~~G~~~~~ 383 (650)
.+.+.||+|++|++|+++ +.|+.++.
T Consensus 215 -~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 -FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred -HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 477889999999999997 56887653
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.7e-34 Score=269.56 Aligned_cols=226 Identities=21% Similarity=0.445 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
.++++|+++.+.... .-.+....+++.|||+++.|+.+||+|.||||||||.|+|+|... |++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 478888877653211 111234569999999999999999999999999999999999653 569999999999742
Q ss_pred -hc-cCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 006330 226 -SL-KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (650)
Q Consensus 226 -~~-~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGe 300 (650)
.. .++|-.+||||. +.|.+.+.+-|....++ ..++..+.+.+++.+.++.+||- +..+ -++..||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchh
Confidence 23 367999999985 66777777777766544 44577888999999999999984 4343 3467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
||||++||||+.+|+|+|.||...+||...+.++++++-+|.++ |.+-|+++.++. .+...+|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999865 999999999976 4778899999999999999999
Q ss_pred HHHHH
Q 006330 380 ASEAM 384 (650)
Q Consensus 380 ~~~~~ 384 (650)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 99986
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-33 Score=268.44 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.8
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hc
Q 006330 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (650)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (650)
++|++++| .++.+|+++|++|++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 68899987 23469999999999999999999999999999999999653 468999999987643 34
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA 307 (650)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
|+++.+|++++|||||+|||+.++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998876799999999965 4667789999999875
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-33 Score=332.09 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=174.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..++++|.++++.. ....+.|+||||+|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999842 234459999999999999999999999999999999999774 56899999985
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHH---HHc-CCCccccccccCccCCCCCHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l---~~l-gL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
++||+|++.++.. ||||||.|+.. +. +++.++|-+.. +++ -|+++-.|.||++++ +||||||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~------~d-~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqR 651 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSP------YD-EERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQR 651 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCcc------cc-HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHH
Confidence 9999999999965 99999999853 22 22333332221 222 245677889998776 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
|++|||+.+|++|++||.|.|++|+.....+.+..-+..-+++|+|++|||.. ....||+|++|++|+|++.|+++|+
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHH
Confidence 99999999999999999999999999988887655443445899999999854 5788999999999999999999999
Q ss_pred HH
Q 006330 384 MA 385 (650)
Q Consensus 384 ~~ 385 (650)
++
T Consensus 730 ~~ 731 (1381)
T KOG0054|consen 730 LK 731 (1381)
T ss_pred Hh
Confidence 83
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.9e-33 Score=317.50 Aligned_cols=189 Identities=28% Similarity=0.390 Sum_probs=155.4
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEE-----------ECCEe
Q 006330 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (650)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (650)
+++++|. +...+|++++ .+++||+++|+||||||||||+|+|+|.+. +.+|+|. ++|.+
T Consensus 78 ~~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 78 EPVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred CceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChH
Confidence 3677771 2246999999 999999999999999999999999999653 4589998 99988
Q ss_pred CChh------ccCcEEEEccC----CcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006330 223 YSKS------LKSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (650)
Q Consensus 223 ~~~~------~~~~i~yV~Q~----~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (650)
+... .+.++++.+|. +.++. .||+|++.+. +..++++++++.++|.+..|+.+
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~---- 210 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRDI---- 210 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh----
Confidence 7431 12345665654 44443 3999998641 12346788999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|+|++|+++
T Consensus 211 -~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 -SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999988 999999999975 577889999999873
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-32 Score=343.16 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=155.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
++++|+|+|++|++|++++|+|||||||||||++|+|.+. +.+|+|.++ ++|+||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999653 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (650)
||.|+.... .....+..+...+++.++.+ +++.++.+|.. ...|||||||||+|||||+.+|+|+||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000011112233444444 33446666644 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHHH
Q 006330 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (650)
Q Consensus 329 ~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~~ 385 (650)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++.+
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99998887543222358999999999753 47899999999999999999998753
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=258.66 Aligned_cols=214 Identities=29% Similarity=0.453 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe---CC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~---~~- 224 (650)
.+++++++..| +...-.+||||++.|||+++|+|.|||||||||++|++++. ++.|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 68999999988 34567899999999999999999999999999999999875 568999996533 21
Q ss_pred ----h-----hccCcEEEEccCCc--CCC----CCCHHHHHH-HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006330 225 ----K-----SLKSKIGFVTQDDV--LFP----HLTVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (650)
Q Consensus 225 ----~-----~~~~~i~yV~Q~~~--l~~----~lTV~enl~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (650)
+ -.|..-|+|.|+|. +-. .-.|.|-+. .+++. .-..++.+.+++++..++... +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456899999874 221 223344332 12111 123455677889988776422 2
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEE
Q 006330 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~ii 367 (650)
+..++.+|||++||+.|||.|++.|+++|+||||-|||..-+..++++++.+..+ |..+|++|||+.- +--++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 2356899999999999999999999999999999999999999999999999865 9999999999763 445689999
Q ss_pred EEeCCeEEEecCHHHHH
Q 006330 368 LLGKGSLLYFGKASEAM 384 (650)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (650)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888765
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.2e-32 Score=303.58 Aligned_cols=208 Identities=29% Similarity=0.459 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++|+++.| +.+++++|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+-
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 57889999999999999999999999999999999999653 56899987642
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhcc-------------CCCC--------------ccHHHHHHHHHHHHHHcCCC
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (650)
-+++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 35999999999998889999887653210 0000 00001235677788888887
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh
Q 006330 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (650)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~ 361 (650)
+. ++.+ ..||||||.||+||++|+.+|++|+|||||+.||..+..-+.+.|++. .| |+|+|||| ...+-+
T Consensus 146 ~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 5544 689999999999999999999999999999999999998888888754 46 99999999 556778
Q ss_pred hcCEEEEEeCCeE-EEecCHHHH
Q 006330 362 KFDKLILLGKGSL-LYFGKASEA 383 (650)
Q Consensus 362 ~~D~iivL~~G~i-v~~G~~~~~ 383 (650)
.|++|+-++.|++ .|.|..+.-
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HhhheEEecCCceeEecCCHHHH
Confidence 8999999999986 566665443
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=1.8e-32 Score=318.41 Aligned_cols=219 Identities=22% Similarity=0.282 Sum_probs=157.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcceEEEECCEeC--
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~-- 223 (650)
...|+++|++++| +++++|+|+||+|++|+++||+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3469999999998 345699999999999999999999999999999999986421 23468887654431
Q ss_pred ---Ch-------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC---------------ccHHHHHHHHH
Q 006330 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---------------LTKQQKEKRAI 272 (650)
Q Consensus 224 ---~~-------------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~---------------~~~~~~~~~v~ 272 (650)
+. .+++.++|++|++.+... ++.++.........+.. ......++++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 10 012336677776543221 22222111000000000 00012345666
Q ss_pred HHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 006330 273 DVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (650)
Q Consensus 273 ~~l~~lgL~-~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~ 351 (650)
+++..+|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 778888885 22343 34689999999999999999999999999999999999999999999876 6799999
Q ss_pred ecCCChHHHhhcCEEEEEeCCeEE-EecCHHHH
Q 006330 352 IHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (650)
Q Consensus 352 ~H~~~~~i~~~~D~iivL~~G~iv-~~G~~~~~ 383 (650)
+|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 398 sHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 398 SHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99964 577889999999999996 67776543
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=259.83 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=162.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---h
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (650)
++.+|+++. ++++.++.++||++.+||++-|.|||||||||||++|+|... +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 566777764 357789999999999999999999999999999999999764 568999999998864 2
Q ss_pred ccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 006330 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (650)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~I 306 (650)
+++.+-|+--.+-+=+.+||.|||.|....... ...+.+.+.++.+||....|.++ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 456778888888888899999999998765321 12356788999999998888876 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~ 357 (650)
||-+++.+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999888888899999999875
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.9e-30 Score=263.13 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=135.5
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCcceEEEEC------------CEeCCh--hcc-CcE
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL-~~L~G~~~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (650)
.+.++|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 356799999999999999999999999999995 44431 1221110 000000 111 224
Q ss_pred EEEccCCc--CCCCCCHH---HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 006330 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 232 ~yV~Q~~~--l~~~lTV~---enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
++..|++. +.+..+|. +...+...+. ......++ .+.++.++|.+ ..+. .+..||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 45455442 23444544 2222221111 11112223 46789999975 2443 45789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEe
Q 006330 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (650)
Q Consensus 306 IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~ 377 (650)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||++. .+ +.||+|++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999878999999999975 34 689999999 99999998
Q ss_pred c
Q 006330 378 G 378 (650)
Q Consensus 378 G 378 (650)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=8.7e-31 Score=243.79 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=117.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEccCCcCCCCCCHHH
Q 006330 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
|+|||++|++|++++|+||||||||||+++|+|... +.+|+|.+||.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999643 468999999999864 45788999999999999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTs 324 (650)
| ...++++++++.+++.+..++.++.. ...|||||||||+||+||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23445788999999888777777544 37899999999999999999999999999996
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=244.86 Aligned_cols=212 Identities=27% Similarity=0.415 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe--CC--
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS-- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~--~~-- 224 (650)
.|..+||++++.-.. ..+-.-++|+|+||+++.||++++=||||+||||||++|-|.. . +++|+|++.... ++
T Consensus 4 ~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~-~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-L-PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-C-CCCceEEEEeCcchhhhh
Confidence 578899987764321 1122358999999999999999999999999999999999854 3 458999996542 11
Q ss_pred ----h---hc-cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 006330 225 ----K---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (650)
Q Consensus 225 ----~---~~-~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (650)
. +. ++.||||.|.-...|..+..|-+.-.+..+ .++.+...+++.+++..+++++..-.+ .+..+
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 1 22 456999999887788877777776554332 466777888999999999998765443 35789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 297 SGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||||+|||.|||.++.|-+||+|||||+.||..++..+++++++-..+|..+|=+-||- ..-...|||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999888899999999993 334457899988754
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.6e-30 Score=263.60 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=153.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CcceEEEECCEeCChhccC-
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~-----G~~~~----~----------~~~G~I~~~G~~~~~~~~~- 229 (650)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+.+..|+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC
Q 006330 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (650)
Q Consensus 230 -----------------------------~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (650)
.+.|..++...+..+||.|++.|....+ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2456666666667899999999875431 12456788999999
Q ss_pred Cc-cccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 281 ~~-~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
.+ ..+. .+..||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 75 2343 3568999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred hHHHhhcCEEEEE------eCCeEEEecCH
Q 006330 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (650)
Q Consensus 357 ~~i~~~~D~iivL------~~G~iv~~G~~ 380 (650)
. .+.||++++| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=269.06 Aligned_cols=213 Identities=23% Similarity=0.447 Sum_probs=178.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC--
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (650)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++.
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 346788888642 258999999999999999999999999999999993 3456899999999874
Q ss_pred ---hhccCcEEEEccC---CcCCCCCCHHHHHHHHHhccCC-C-CccHHHHHHHHHHHHHHcCCCc-cccccccCccCCC
Q 006330 225 ---KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (650)
Q Consensus 225 ---~~~~~~i~yV~Q~---~~l~~~lTV~enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~ 295 (650)
+..+..|+|||.| .-++..++|++|+.++...+.. . -++.....+.+++.++.+++.- ..+ ..+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-----~~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-----QPIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-----chhhc
Confidence 2456789999987 4688899999999988332211 1 2455666777889999998852 122 33568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEE
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv 375 (650)
||||.+|||.|||.|..+|+||||||||.|.|.-+..+|++++++++++|++||++|.++ .|+..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999996 5789999999999999998
Q ss_pred EecC
Q 006330 376 YFGK 379 (650)
Q Consensus 376 ~~G~ 379 (650)
..=+
T Consensus 481 ~e~~ 484 (500)
T COG1129 481 GELD 484 (500)
T ss_pred EEec
Confidence 7443
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=275.26 Aligned_cols=205 Identities=28% Similarity=0.440 Sum_probs=166.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChh
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (650)
...++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 45799999999982 23689999999999999999999999999999999999653 44899987532
Q ss_pred ccCcEEEEccCC-cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 227 ~~~~i~yV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
-++||..|+. .+.+..|+.|++.-.. |. ..+..+...+..++++...- ...++.||||||.|+.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3599999986 4557789999987532 11 11566788999999874221 1235689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe-cCHHHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~-G~~~~~~ 384 (650)
+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||. ..+-+.|++++++.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999998865 34999999995 457889999999998 65544 7776654
Q ss_pred H
Q 006330 385 A 385 (650)
Q Consensus 385 ~ 385 (650)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1e-28 Score=245.36 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=129.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCcceEEEECCEeCCh-hccCcEEEEccCCcCCCCCC
Q 006330 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-------~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (650)
+++++++++| +++|+||||||||||+++|+|.+.. ....|++.++|++... ..+++|+||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7799999999 9999999999999999999985421 1123578888876532 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDE 321 (650)
|+. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12355666665 333333 35689999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||+|||+.+...+.+.|+++++ +.|||++||++. ..+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3478999999975
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.7e-29 Score=238.52 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.++++||... .-|-.+|+.+..||++-++|||||||||||-.++|.. +-+|+|.++|.|+..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4677887654 2377899999999999999999999999999999965 348999999999863
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
++.++-+|+.|+..-...|.|...+.+. .+.+++...++++.+.++|.+...+ .+..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceee
Confidence 5667778998875433357898888753 2345667778888899999865544 3478999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEe
Q 006330 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (650)
Q Consensus 305 ~IA~aL~~-----~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~ 377 (650)
-+|...+. || ++|+||||.++||...+..+.+.|.+++..|.+||++.||++. ..+.+|++.+|++|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987754 44 6899999999999999999999999999999999999999875 6689999999999999999
Q ss_pred cCHHHHH
Q 006330 378 GKASEAM 384 (650)
Q Consensus 378 G~~~~~~ 384 (650)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.1e-27 Score=240.58 Aligned_cols=186 Identities=16% Similarity=0.308 Sum_probs=131.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCcce--------EEEECCEe--
Q 006330 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (650)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~---------------~~~~~~G--------~I~~~G~~-- 222 (650)
+++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCc
Confidence 3567888887 7899999999999999999998321 11 1234 56666532
Q ss_pred --CC---hhccCcEEEEccCCcCCC-CCCHHHHHHHHHhccCCCCccH-HHHHHHHHHHHHHcCCCccccccccCccCCC
Q 006330 223 --YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (650)
Q Consensus 223 --~~---~~~~~~i~yV~Q~~~l~~-~lTV~enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (650)
+. ...++.++|++|+..+++ ..|..|...+............ .....++.+ .+++.+..+. .+..
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccc-----cccc
Confidence 11 134677999999888876 4677776666554322211000 000112222 2344333332 3468
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
||||||||++|||+|+. +|++++|||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78888888884 4678999999986
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=8.6e-29 Score=248.68 Aligned_cols=189 Identities=14% Similarity=0.183 Sum_probs=139.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|+++|.. +| +++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....+
T Consensus 5 ~l~l~nfk-~~--------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~ 58 (212)
T cd03274 5 KLVLENFK-SY--------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQ 58 (212)
T ss_pred EEEEECcc-cC--------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhh
Confidence 35666654 33 45679999987 8999999999999999999982 1 2222211223
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhccCC-----CCccHHHHHH--HHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 301 (650)
+++++++|+..+++.+|+++++.+....... .....+.... ...++++.++|++..++. +..||+|||
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~ 133 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEK 133 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHH
Confidence 5799999999889999999987765432100 0011110000 014455667777766654 357999999
Q ss_pred HHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 302 KRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 302 qRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||++||++++. +|++++|||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999974 4799999999999999999999999999864 67899999994 57789999999975
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.5e-27 Score=242.03 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=136.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCE-eCCh------hccCcEEEEccCC---------cCCCCCCH
Q 006330 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (650)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~-~~~~------~~~~~i~yV~Q~~---------~l~~~lTV 246 (650)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+.++++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 44999999999999999999998654 233568888776 3311 1235799999985 34567899
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccc---------------cccCccCCCCCHHHHHHHHHHHHHh
Q 006330 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEII 311 (650)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGerqRv~IA~aL~ 311 (650)
.+++.++...+.... .+....+++.+.++.+|+...... ...+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 998876432211000 112334678889999998621000 0112346789999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 312 ----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 312 ----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
.+|++++|||||++||+.+...+.+.|+++.+ |.|+|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 57899999999999999999999999999854 88999999994 5678899998875
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=3.4e-26 Score=229.88 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=132.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC-Ee-CC-
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HP-YS- 224 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~-~~- 224 (650)
.|+++|+. +| .++ ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+. .. +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47788876 54 111 56677644 589999999999999999999997555332 33333321 01 11
Q ss_pred hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
......|++++|++.... ++..+. ..+.++..+.+ .++..++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 233566999999863311 121111 12222221111 122222333223 34568999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 305 ~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+||++|+. +|+++||||||++||+.+...+.+.|++++++++|||++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 67899999999999999999999999999877999999999975 4678899999999874
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.9e-25 Score=273.98 Aligned_cols=138 Identities=25% Similarity=0.365 Sum_probs=112.2
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh---hCCC
Q 006330 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (650)
Q Consensus 240 l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~---~~P~ 315 (650)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+. .+..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999987642211111233444556 57888999764 444 34689999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe------CCeEEEecCHHHHHH
Q 006330 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (650)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~------~G~iv~~G~~~~~~~ 385 (650)
+|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999888999999999975 34 8999999996 789999999998753
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-26 Score=242.20 Aligned_cols=204 Identities=25% Similarity=0.325 Sum_probs=162.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh---
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (650)
.|+++||.|.|.. ..-=+..||++|++||++-|+|.||||||||+++|.|. +.| .+|+|++||+|++.
T Consensus 322 ~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~P-qsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQP-QSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cCC-CCCceeECCccCCCCCH
Confidence 6999999999842 22457899999999999999999999999999999995 444 58999999999973
Q ss_pred -hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
++|+-++-|+-|..+|+.+= .++.. ...+.++..++.+.|.+...-.-|+-..-.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 57888888999988887521 11111 122345666777766553322222222346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
++-.||+-+-+|+++||=-+--||.-++.+++.+--+ .+.|+||+.+|||- .-+..+||++.+.+|++++.-
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999998877654 55699999999993 368899999999999998764
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=6.7e-25 Score=236.47 Aligned_cols=222 Identities=23% Similarity=0.382 Sum_probs=185.8
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC---
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~--- 223 (650)
.+.|+++|++..- ..+.+.+++|||+++.||+++|.|-.|-|-+.|+.+|+|... + .+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~-~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-P-ASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-c-CCceEEECCEecccc
Confidence 4579999999752 223578999999999999999999999999999999999543 3 359999999996
Q ss_pred -Ch--hccCcEEEEccCC---cCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006330 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (650)
Q Consensus 224 -~~--~~~~~i~yV~Q~~---~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (650)
+. ..+..++|||.|. -+.+.+|+.||+.+....+.| .-+......+.+.++++++++...... ...
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cch
Confidence 22 2346799999986 467789999999987643211 124566778889999999988632211 234
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+.||||++||+-+||+|.++|++|+..+||-|||..+.+.|.+.|.++++.|+.|++++-++. +++.+||||.||++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 689999999999999999999999999999999999999999999999999999999999965 6999999999999999
Q ss_pred EEEecCHHH
Q 006330 374 LLYFGKASE 382 (650)
Q Consensus 374 iv~~G~~~~ 382 (650)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998887765
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=5.9e-26 Score=226.85 Aligned_cols=165 Identities=17% Similarity=0.266 Sum_probs=125.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCcceEEEECCEeCC-hhccCcEEEEccCC-----cCCCCC
Q 006330 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHL 244 (650)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~----G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~-----~l~~~l 244 (650)
..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 345667788 99999999999999999995 7543 33455542222222 23456799999987 445566
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH------HHHHHHHhhCCCEEE
Q 006330 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLF 318 (650)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR------v~IA~aL~~~P~iLl 318 (650)
|+.||+.+.. .. .+++.+ + ..++.||+||+|| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~~---------~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------QG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------hH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888886531 11 122223 2 2346899999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 319 LDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 319 LDEPTsgLD~~s~~-~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
|||||++||+..+. .+.+.|++++++ |.|||++||++. ....||+++.|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999876 889999999964 4578999999965
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=3e-25 Score=247.78 Aligned_cols=196 Identities=28% Similarity=0.464 Sum_probs=155.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+++|++..- +..+..|++.++.++|||-+.|.||||||||||+|+|+|.- |--+|+|.+= .
T Consensus 391 ~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW--P~g~G~I~~P-------~ 454 (604)
T COG4178 391 HGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW--PWGSGRISMP-------A 454 (604)
T ss_pred ceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC--ccCCCceecC-------C
Confidence 479999999874 23458999999999999999999999999999999999954 2335776432 1
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc-CccCCCCCHHHHHHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVCI 306 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerqRv~I 306 (650)
...+-|+||.|.+... |.||-|.|+... ... .++.+.++|.+.||++..+..-+ ++.-+.||+||||||++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2458999999998766 999999985321 112 34557788888888876654322 12335699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-|.|++. +..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999998743 3899999999965 456666655554
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=1.9e-24 Score=255.52 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006330 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (650)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 319 (650)
+||.|++.|...+. . ..+..+.++.+||.+ ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865431 1 123457889999975 2333 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEecCHHHHHH
Q 006330 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (650)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~G~~~~~~~ 385 (650)
||||+|||+.....+++.|+++.++|.|||+++|++.. ...||+|+.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4689999999 6899999999998753
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=5.5e-25 Score=213.33 Aligned_cols=229 Identities=21% Similarity=0.317 Sum_probs=176.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cceEEEECCEeCC---
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS--- 224 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~--- 224 (650)
+.++|++..+.. +.+..+++++||++++.||+-++||.||||||-..|+|+|...+.- +..+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 567788877643 2356679999999999999999999999999999999999665321 2344566666642
Q ss_pred h-h----ccCcEEEEccCCc--CCCCCCHHHHHHHHHhccCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006330 225 K-S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (650)
Q Consensus 225 ~-~----~~~~i~yV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (650)
+ + .-+.|+++||+|. |-|.-+|...|.-....+.-+.. .-..++.++-+++..+|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 1 1 2245789999985 44444444333221111100000 1123567788999999999877643 45778
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
+|.-||-|+|.||.|++.+|++|+.||||+++|+.++.+|.++|.++.+. |.||++++||+. .+-+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecc
Confidence 99999999999999999999999999999999999999999999999854 899999999975 4889999999999999
Q ss_pred EEEecCHHHHHH
Q 006330 374 LLYFGKASEAMA 385 (650)
Q Consensus 374 iv~~G~~~~~~~ 385 (650)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.4e-23 Score=247.79 Aligned_cols=125 Identities=27% Similarity=0.453 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 006330 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (650)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~---~P~iLl 318 (650)
.|||.|.+.|..... ...+..++++.+||... .+. .+..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 357777777754321 01134577888999642 333 346899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEecCHHHH
Q 006330 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (650)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~G~~~~~ 383 (650)
|||||+|||+.+...+++.|+++.++|.|||+++|++.. ...||+|++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4679999999 79999999999875
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=4e-24 Score=231.45 Aligned_cols=213 Identities=25% Similarity=0.383 Sum_probs=144.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..+.++|+++.+ .++.+++|++|++.+|+.++|+|||||||||+|++|.|+..+.+..=.++.-.+.+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 368999999987 467899999999999999999999999999999999998754332222322222221111
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHh-c-----------------cCCCCccHHHHHHHHHHHHHHcCCC-ccccccc
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL-L-----------------RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMI 288 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~-~-----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~v 288 (650)
.+-+-+|.+. .-..+.-+.+-.. + |. ..+..+..+.++..++..+|.. +..+.
T Consensus 146 ~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~k-- 217 (614)
T KOG0927|consen 146 KQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQDK-- 217 (614)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHHH--
Confidence 1111111100 0011111111000 0 00 0112233344556666666543 33333
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHHHhhcCEEE
Q 006330 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~~H~~~~~i~~~~D~ii 367 (650)
.+.++|||+|.|+++||+|..+|++|+|||||++||.++..-+-+.|.+. .+ ++|+++|.-. .+-..|.+|+
T Consensus 218 ---~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT~Ii 290 (614)
T KOG0927|consen 218 ---KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCTNII 290 (614)
T ss_pred ---HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhhhhh
Confidence 45789999999999999999999999999999999999988888888764 34 8999999854 4778999999
Q ss_pred EEeCCe-EEEecCHHHH
Q 006330 368 LLGKGS-LLYFGKASEA 383 (650)
Q Consensus 368 vL~~G~-iv~~G~~~~~ 383 (650)
-|++++ +.|.|+.+..
T Consensus 291 ~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQY 307 (614)
T ss_pred eecccceeeecCCHHHH
Confidence 999999 6667776553
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=3.8e-24 Score=231.57 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=157.6
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChh
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (650)
++.+.++||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.-
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~------ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS------ 451 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc------
Confidence 45799999999983 22279999999999999999999999999999999999764 4578775332
Q ss_pred ccCcEEEEccC--CcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 006330 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (650)
Q Consensus 227 ~~~~i~yV~Q~--~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv 304 (650)
..++++.-|+ +.+--..++-|++.=.. ++....+.+..++..+||....++ ..+++||+|||+||
T Consensus 452 -H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 452 -HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred -cccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 2335555554 22323457777765321 123345667889999999854443 23578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE-EEecCHH
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 381 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i-v~~G~~~ 381 (650)
..|+.++..|.||+|||||+|||..+...+-+.|.+. .-+||+++||.. .+-+.+++|.+..+|.+ .+.|...
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999999988888888765 348999999965 47788999999988765 5666543
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=7.9e-23 Score=203.39 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=121.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEE--ECCEeCCh-----hccCcEEEEccCCcCCCCCC
Q 006330 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT--YNDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~--~~G~~~~~-----~~~~~i~yV~Q~~~l~~~lT 245 (650)
++++++++.+| +.+|+||||||||||+.+|...+ .|+.. ..|..+.. .....|.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46788888888 88999999999999999997422 12211 11221111 12345888888776654
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 006330 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (650)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDE 321 (650)
| . .. ....++++++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 83 ---~--------~---~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N--------P---LC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C--------c---CC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 0 11 1123556677765 333443 3568999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCCChHHHhhcCEEEEEeCCe
Q 006330 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (650)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~---g~TvI~~~H~~~~~i~~~~D~iivL~~G~ 373 (650)
||+|||+.+...+.+.|+++.++ +.|||+++|++.. +. .+|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~-~~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LA-SSDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cc-cccceeEEEecC
Confidence 99999999999999999998653 3689999999764 54 459999998754
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=2e-22 Score=214.20 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=135.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHH
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~ 251 (650)
-|.-=.++|..||+++++||||-||||++++|+|.+. +++|. .. .-+|+|=||--.--...||++.|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 3444556677789999999999999999999999764 44675 11 234889899633223569999887
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006330 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (650)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (650)
-....+... .-...++++-|.|++..+..+ .+|||||.|||+||.+|.+++++++||||++-||++.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 554322111 112346777788888777654 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 332 ~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
..+-+.++++... ++|.+++-||... +--.+||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 8899999999753 445689998875
No 391
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=217.47 Aligned_cols=204 Identities=21% Similarity=0.345 Sum_probs=156.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|+|++|++.- +..+..+++|+|++|+.|+-+.|.||||||||+|+++|+|. . |..+|.+.--.+.-
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~---- 499 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGG---- 499 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCC----
Confidence 479999999874 22245688899999999999999999999999999999985 4 34689886543321
Q ss_pred cCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccc------ccCccCCCCCHHHH
Q 006330 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (650)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGer 301 (650)
.+.+=||||.|.+-.+ |.||.+.|....-.+ ..+...++++.+.|+..+|.|..+.. +--+....||+||+
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 1458999999987655 999999987321111 11122344566677777766544322 11122356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+.=|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999988875 4999999999976 4566688888875
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=6.8e-23 Score=210.58 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=118.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe-C-C---------hhccCcEEEEccCCc--CCCCCCHH
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDV--LFPHLTVK 247 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~-~---------~~~~~~i~yV~Q~~~--l~~~lTV~ 247 (650)
.++ +++|+||||||||||+++|++.+. + ..|++..++.. + . ....-.+.|..|++. .+. .+++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~-~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFR-RIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEE-EEEE
Confidence 344 999999999999999999998654 2 24656544321 0 0 011222444444432 111 1222
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccc---------cccC--------ccCCCCCHHHHHHHHHHHHH
Q 006330 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGG--------SFVRGVSGGERKRVCIGNEI 310 (650)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~--------~~~~~LSGGerqRv~IA~aL 310 (650)
+... ..+.... ....+.++++++.+|+...... .+.+ ..+..||||||||++||+++
T Consensus 97 ~~~~---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 97 GGSS---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CCce---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 2110 0011110 1123345678888888532211 1111 12368999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 311 IIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 311 ~~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+.+ |+++||||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.||++++|.+
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 875 899999999999999999999999999987799999999994 35789999999975
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.9e-22 Score=215.08 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=138.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhc
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (650)
..|...|++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| ++.+..++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888888 57889999999999999999999999999999999994 222 222332222
Q ss_pred cCcEEEEccC-CcCCCCCCHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 228 ~~~i~yV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
+. .+++-. +.+-..+.+.+-+.--. .+... ..++....+|..+|..+.... ...+.||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122221 12222323333322111 11111 223334447888888653322 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE-EEecCHHH
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASE 382 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i-v~~G~~~~ 382 (650)
+||||..+|+||||||||+.||..+..-+.+.|..+ +.|+|+|+|| +..+-..|..|+-+++-++ .|.|..++
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999988888888764 4799999999 4446667777777766554 44555444
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.5e-21 Score=205.83 Aligned_cols=192 Identities=26% Similarity=0.393 Sum_probs=150.3
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh
Q 006330 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (650)
.|+.|-++||+|.|+ +.++++++++|-|.-...+|||||||.||||||++|.|.+. +..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RK------- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRK------- 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhc-------
Confidence 356799999999983 56789999999999999999999999999999999999764 34676543
Q ss_pred hccCcEEEEccCC--cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 006330 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (650)
Q Consensus 226 ~~~~~i~yV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqR 303 (650)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 3345699999874 45555677777754322 222 2345678889998888885 467899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
|++|.--+..|+||||||||++||.++...+-+.|++. .-.||+++||-.. +.+.--.++|+.+
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 99999999999999999999999999988888888775 3489999999543 3333335555554
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.86 E-value=5.8e-21 Score=185.07 Aligned_cols=209 Identities=23% Similarity=0.299 Sum_probs=157.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (650)
..|++.++.|+|+ ...+++-|+|++++.|....++|.||||||||||+|+|.-. ...|.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~-------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEecc-------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 3699999999994 23489999999999999999999999999999999999533 235899999986411
Q ss_pred -------------hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006330 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (650)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (650)
++.+.+++-- +--+...+++.+.| |+... ... + +-+.+++.+.+.-.. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~g-----~dp-~---Rre~LI~iLDIdl~W-------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVGG-----DDP-E---RREKLIDILDIDLRW-------R 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHH-hhccC-----CCh-h---HhhhhhhheeccceE-------E
Confidence 2333333333 22233356665544 44321 111 2 334556666553211 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
.+.+|-|||+||.|++-|++.=++|+|||-|--||..++..+++.+++-.+ +|.|||+.||-..- +.....+++-|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 357999999999999999999999999999999999999999999999875 49999999999764 6788999999999
Q ss_pred CeEEEecCHHHHH
Q 006330 372 GSLLYFGKASEAM 384 (650)
Q Consensus 372 G~iv~~G~~~~~~ 384 (650)
|+++..-+.++..
T Consensus 224 Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 224 GKLVDNLKYQKIK 236 (291)
T ss_pred Ceeeeccccchhh
Confidence 9998855554443
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=2.6e-20 Score=187.41 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.6
Q ss_pred cCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCCChHHHhhcC-
Q 006330 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g-~TvI~~~H~~~~~i~~~~D- 364 (650)
.+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 3468999999998877554 5799999999999999999999999999999876 5 589999999654 456666
Q ss_pred -EEEEEeCCe
Q 006330 365 -KLILLGKGS 373 (650)
Q Consensus 365 -~iivL~~G~ 373 (650)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-20 Score=202.86 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=155.6
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh
Q 006330 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (650)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (650)
.++.+++.+|+|.|. ++.. +++.++++.++.-..++++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~-----p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT-----PSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCC-----Ccch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 456799999999873 1122 79999999999999999999999999999999998654 3468776554
Q ss_pred hccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 006330 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (650)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~ 305 (650)
|.+|+|-.|...=+-.+.|.+- .+....+ | ..++ +.++.-+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-P-GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHH-HHHHHhC-C-CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 5679999997543334455443 3333332 2 1233 3455678889997422 22335789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEE
Q 006330 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~ 376 (650)
+|.....+|.+|+|||||+.||-++-..+.+.|+.. +-.||+|||+. ..+-..|+.+.+.++|++.-
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999888875 34899999994 45778899999999999853
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=1.7e-20 Score=186.70 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=110.1
Q ss_pred ceeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCcce-EEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLL~~L~-G~~~~~~~~G-~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
-..++|+++.+|+ +++|.|||||||||||++|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 4568999999995 89999999999999999998 1110 0011 00000 001234444432111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (650)
+.++..+ .....+|+||||++.|++++ .+|+++++|||++|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCH
Confidence 1111011 11246999999999999884 89999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEec
Q 006330 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (650)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G 378 (650)
.....+. ..++++.+.|.|+|++||+. ++.+.||++++|++|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999986 46888877789999999983 577899999999999998874
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=198.85 Aligned_cols=169 Identities=32% Similarity=0.505 Sum_probs=128.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe-------------CChhcc----------CcEEEEcc
Q 006330 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-------------YSKSLK----------SKIGFVTQ 236 (650)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-------------~~~~~~----------~~i~yV~Q 236 (650)
.++|++++|+||||-||||-+|+|+|.+. |. =|+ +++.| +...++ .++-||.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 57899999999999999999999999775 33 232 22221 100010 12223333
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~i 316 (650)
-|-.+.. ||.|-|.-. ...-..+++++.++|.+..|..+ +.|||||-||++||.++++++++
T Consensus 173 iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 173 IPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCE
Confidence 3444433 777766422 11235778999999998877654 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
+++|||||-||...+...-+.++++++.+++||++-||+.. +--++|-|.++..
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 99999999999999999999999999889999999999763 4456899998875
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=1.6e-19 Score=176.65 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 296 LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|+++++.|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999976
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.2e-19 Score=180.60 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=103.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346788887765 79999999999999999999998432 2234544422 136778788899999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (650)
|+.++.. .... ..+++.++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~~-e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYA-ELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHH-HHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 1122 23567777776642 69999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCC
Q 006330 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~~H~~~ 356 (650)
.....+. ..++++.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988775 468888777899999999965
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=3.8e-18 Score=210.33 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=144.5
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CCCC--CCcceEEEECCEeCCh--------------hcc-
Q 006330 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RLME--PTVGGSITYNDHPYSK--------------SLK- 228 (650)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G-----~~~~--~~~~G~I~~~G~~~~~--------------~~~- 228 (650)
.=|+||+.+|+-|.+++|.|.||||||||++-..- .+.. ....--|.+|-.|+.+ .+|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 35899999999999999999999999999974431 1100 0123347777666521 000
Q ss_pred ---------------Cc---------------EEEEccCCcCC--------------------------------CCCCH
Q 006330 229 ---------------SK---------------IGFVTQDDVLF--------------------------------PHLTV 246 (650)
Q Consensus 229 ---------------~~---------------i~yV~Q~~~l~--------------------------------~~lTV 246 (650)
.. -|++.=+-.++ -.|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 00 11111111111 13567
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 006330 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 323 (650)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPT 323 (650)
.|.+.|... ..+-.+.-+.|.++||.... +| +....|||||.||+-||..|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 776666421 11233455678888986432 23 44567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe------CCeEEEecCHHHHHH
Q 006330 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (650)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~------~G~iv~~G~~~~~~~ 385 (650)
.||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+=|. .|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999964 678899999995 479999999999864
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.6e-19 Score=181.20 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=116.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEE-EEccCCcCCCCCCHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (650)
.+.+.+|+++++.+|++++|.||||+|||||++.++ .. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH------------------HHHHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999997 21 1122344 6666542221
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 006330 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (650)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP--- 322 (650)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 012334445554322 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecC
Q 006330 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (650)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~ 379 (650)
|++||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999987533 3344443 48899999996 45789999999999999987764
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=6.5e-18 Score=190.61 Aligned_cols=128 Identities=28% Similarity=0.484 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006330 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (650)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 319 (650)
.|||.|-..|.... ..-.+.-+.|..+||.-. .+| +....|||||.|||-+|.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 35666666654321 122344456677888632 233 445689999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe------CCeEEEecCHHHHHH
Q 006330 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (650)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~------~G~iv~~G~~~~~~~ 385 (650)
||||+||-.....++++.|.+|.+.|.|||+|-|.+. +.+.||.|+=|. .|+||..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 689999999984 589999999999875
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=4.8e-19 Score=191.05 Aligned_cols=185 Identities=23% Similarity=0.368 Sum_probs=133.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhcc
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (650)
.|.++||-.-. + ....++..++|.|+||--+.|.||||||||+|.++|.|. . |...|...+ | .+
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~---P----~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI---P----RP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec---C----CC
Confidence 47788876543 2 234688999999999999999999999999999999995 4 333343221 1 23
Q ss_pred CcEEEEccCCcCCCCCCHHHHHHHHHhcc--CCCCccHHHHHHHHHHHHHHcCCCccccccccC----ccCCCCCHHHHH
Q 006330 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (650)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGerq 302 (650)
.++-|+||.|.+- .-|.||.+-|....- ..+..++ +....+|+.+.|++....-.|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888887642100 0011222 2344555555555433322210 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 006330 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (650)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~ 357 (650)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-++|+|+-
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999999999999999999999999999888764 49999999999973
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.8e-18 Score=180.65 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
.|||||+||++||++++. +|++++|||||++||+.....+.+.|+++.+ +.|+|+++|++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 468999999998
Q ss_pred CCe
Q 006330 371 KGS 373 (650)
Q Consensus 371 ~G~ 373 (650)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 863
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=183.15 Aligned_cols=185 Identities=26% Similarity=0.430 Sum_probs=138.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CCcceEEEECCEeCChhccCcEEEEccCC-cCC
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLF 241 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~------~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~-~l~ 241 (650)
...+|+|||++|+||++++|+|+|||||||+|++|+|.... .+++|.|.+--.. --+.+|-+. .-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccccccc
Confidence 46799999999999999999999999999999999995321 1346766542211 124455432 223
Q ss_pred CCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006330 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (650)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE 321 (650)
..-|+.|.+.- .+.+ -..+.+++...||.+-. .-....+.||-|||.|..||.++...|.+++.||
T Consensus 468 ~~~tilehl~s-----~tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 35577777642 1111 12355788889987532 2223457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhh-cCEEEEEeCCeEE
Q 006330 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (650)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~-~D~iivL~~G~iv 375 (650)
--+.||+.++..+.+.+.+++++ |.|++++||+|.- .-.+ -|+++++.=|.+.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999864 9999999999753 3334 4999988777653
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=4.2e-18 Score=164.06 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.+++.++|++||++. +...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998766889999999964 467799999996
Q ss_pred C
Q 006330 371 K 371 (650)
Q Consensus 371 ~ 371 (650)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=9.5e-18 Score=198.98 Aligned_cols=135 Identities=23% Similarity=0.417 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHhccCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 006330 243 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (650)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P- 314 (650)
.+||.|.+.|...+..+.. .. -.+..++++ .++.+||.+. .|+. +..|||||+|||.||++|..+|
T Consensus 436 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~~~ 509 (943)
T PRK00349 436 ELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSGLT 509 (943)
T ss_pred cCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhCCC
Confidence 6899999998544322210 00 012334443 6778888754 4543 4689999999999999999997
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEecCHHHHHH
Q 006330 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (650)
Q Consensus 315 -~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~G~~~~~~~ 385 (650)
++++|||||+|||+.....+.+.|+++++.|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 510 ~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 510 GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999753 4 569999999 8999999999998743
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.8e-17 Score=193.53 Aligned_cols=134 Identities=24% Similarity=0.396 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHhccCCCCccH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 006330 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (650)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P- 314 (650)
.|||.|.+.|...+..+..... .+..+++ +.+..+||... .+ +.+.+|||||+|||.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 1111222 33566777543 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEecCHHHHH
Q 006330 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (650)
Q Consensus 315 -~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~G~~~~~~ 384 (650)
++|||||||+|||+.+...+++.|+++.++|.|||+++|++. . ...||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~-i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-T-IRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-H-HhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999965 3 4689999999 899999999998874
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.5e-16 Score=165.83 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhc
Q 006330 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~ 363 (650)
..-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999765 334 55555433 345566
Q ss_pred ---CEEEEEeCCeE
Q 006330 364 ---DKLILLGKGSL 374 (650)
Q Consensus 364 ---D~iivL~~G~i 374 (650)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.9e-18 Score=179.43 Aligned_cols=214 Identities=25% Similarity=0.353 Sum_probs=148.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC---
Q 006330 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (650)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (650)
..|.++|.+.+. .++.++.|-|++|--|..+++|||||-||||||+.|+.|-..-+..=.|++..+.+-
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 468888888764 457799999999999999999999999999999999987543222234555444321
Q ss_pred -----hhc---cCcEEEEccCCc-----CCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccC
Q 006330 225 -----KSL---KSKIGFVTQDDV-----LFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (650)
Q Consensus 225 -----~~~---~~~i~yV~Q~~~-----l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (650)
.-+ .++..++..+.. --...|+.|-+.-.+ .+|- +-....++++..+|.-||.+.-.. +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----c
Confidence 000 111111111111 112346666554222 2221 112224556778888888864332 2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
+....+|||-|-||++||||..+|-+|.|||||+.||..+..-+-+.|+.+. +|.++++||-. .+-..|..|+-|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 3346799999999999999999999999999999999999888888887764 59999999965 4677899999999
Q ss_pred CCeEEE-ecCH
Q 006330 371 KGSLLY-FGKA 380 (650)
Q Consensus 371 ~G~iv~-~G~~ 380 (650)
+-++-| .|..
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 887744 4543
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.70 E-value=1.1e-16 Score=159.66 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=105.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHH
Q 006330 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (650)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~ 253 (650)
-..++++.+|++++|+|||||||||||++|++.... ...|.. . ...+..++|..|....+ ...+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~-~~~~~~i~~~dqi~~~~---~~~d~i--- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------V-PAESASIPLVDRIFTRI---GAEDSI--- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------c-cccccccCCcCEEEEEe---cCcccc---
Confidence 334566668999999999999999999999953211 112211 0 01122344433322111 111110
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 006330 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (650)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~ 333 (650)
+ ...+.++++++| +..+.+++.+|+++|+||||+|||+.....
T Consensus 86 -------------------------------~-----~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 -------------------------------S-----DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred -------------------------------c-----CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 0 012346666665 666678889999999999999999998887
Q ss_pred HHH-HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 334 IVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 334 i~~-~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
+.. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...+...+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 755 5666776789999999985 4678899999999999998886544
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=3e-16 Score=156.83 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=99.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEE-EEccCCcCCCCCCHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (650)
++.+.+|+++++++|++++|+||||+||||+++++++... ..++| || |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987321 11222 33 3334556777
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 006330 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (650)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (650)
|+|... ++..+..+. ..+.+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 766432 122211111 124699999975 55566889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEecCCC
Q 006330 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 328 ~~s~~~i-~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9776555 4567777777999999999853
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=6.9e-16 Score=155.67 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=109.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
++.+.+|++++.++ ++++|.||||+|||||||.|++.... |+ .|.++.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34688999999987 99999999999999999999863321 11 1222221 2356777765 566777777
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---C
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 323 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---T 323 (650)
++..+ .|- .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 76532 111 122233333333579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+++|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88888652 23445555555 88999999994 567889998888899988877666543
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.58 E-value=6.1e-15 Score=153.18 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=95.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC-----hhccCcEEEEccCCcCCCCCCHHHHHHHHHhccC
Q 006330 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (650)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (650)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|.+ +.+.++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 5789999999999999999998654 45899999999874 24455678888865 334455554421
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006330 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (650)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (650)
+. .|+ ..+ ....+|+++++|||++ ...+...+
T Consensus 182 -----k~--------------------------------~~~---~~~--i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KA--------------------------------EGM---MML--IRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HH--------------------------------HHH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 010 112 2235999999999974 23344455
Q ss_pred HHHHHCCCEEEEEecCCChHHH------------hhcCEEEEEeCCeEEEecCHHHH
Q 006330 339 QDIAEAGKTVVTTIHQPSSRLF------------HKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 339 ~~l~~~g~TvI~~~H~~~~~i~------------~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
+.+ +.|.|+|+++|++..+-. ..|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 369999999998543212 5689999999887 66666543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=153.87 Aligned_cols=178 Identities=26% Similarity=0.366 Sum_probs=133.9
Q ss_pred cccceeceEEEEeCCe-----EEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCC
Q 006330 169 EKDILNGITGSVNPGE-----VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge-----~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (650)
.+.-+.+..+.|+.|+ ++..+|.||.|||||+++++|++. |...|+|-. -.++|=||...-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 4557788888888885 789999999999999999999765 444454421 247777886433224
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006330 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (650)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPT 323 (650)
-|||+.+.--.+. .-..-.-+.++++-|.+++..|.. +.+|||||.|||+||..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5899877532111 001223456777777777666654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~-~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
+-||++.+...-+.+++.- +.++|-.++-|+..-. --++|||++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfIma-TYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA-TYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH-HhhcceeEEEe
Confidence 9999999988888888864 5588999999997543 24689988764
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=1.1e-12 Score=142.39 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh--
Q 006330 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~-- 362 (650)
..+|+||+|++.||+.|+ .+|+||+||||+++||+..+..+++.+.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999885 799999999999999999999999988754 4578899998543 3344
Q ss_pred cCEEEEEeCCeE
Q 006330 363 FDKLILLGKGSL 374 (650)
Q Consensus 363 ~D~iivL~~G~i 374 (650)
.++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.47 E-value=2.5e-14 Score=140.78 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCCChHHHhhcCEEEEE
Q 006330 294 RGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~--~~P~iLlLDEPTsgLD~~s~~~i~-~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
+.+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468888776 444444 499999999999999999877764 556777764 88999999996 467778754344
Q ss_pred eCCeEE
Q 006330 370 GKGSLL 375 (650)
Q Consensus 370 ~~G~iv 375 (650)
.+++..
T Consensus 135 ~~~~~~ 140 (185)
T smart00534 135 RNLHMS 140 (185)
T ss_pred eEEEEE
Confidence 444443
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.45 E-value=1.1e-13 Score=123.74 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=61.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----hccCcEEEEccCCcCCCCCC
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lT 245 (650)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345557788777 554 49
Q ss_pred HHHHHHH
Q 006330 246 VKETLTY 252 (650)
Q Consensus 246 V~enl~~ 252 (650)
|+|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=2.1e-12 Score=130.08 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 295 GVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
.+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+ +.-+|++||++ .++..+|+.+-+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccc
Confidence 69999999999997663 47799999999999999999999999999865 57799999995 4688999887664
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.41 E-value=3.5e-13 Score=158.32 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=91.5
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCc-CCCCCCHHHHHHH
Q 006330 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (650)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~enl~~ 252 (650)
.+++.+.+| ++++|.||||+|||||||+|+|.... ...| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 478888888 99999999999999999999984211 1122 13443321 11 11111110
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006330 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (650)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (650)
.+... + .+.+ ..+.+|+|+++++.|++.+ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~---~---si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 0111 1246999999999998876 799999999999999999998
Q ss_pred HH-HHHHHHHHHCCCEEEEEecCCC
Q 006330 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 333 ~i-~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
.+ ..+++.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5778888878999999999954
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=2.3e-12 Score=129.85 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=87.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCC-CCCHHHH
Q 006330 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (650)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~-~lTV~en 249 (650)
.|-+|+++.=..+.+++|.||||+|||||||.|+..... ...|...... ...++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh-
Confidence 344555554222389999999999999999999832111 1235433221 234777777532221 111111
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 006330 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (650)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (650)
++| .-|-||++++++++.+|+++|||||++|+|
T Consensus 88 ---------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 88 ---------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ---------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 122 456799999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHC---CCEEEEEecCCC
Q 006330 328 STTALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (650)
Q Consensus 328 ~~s~~~i-~~~L~~l~~~---g~TvI~~~H~~~ 356 (650)
+.....+ ...++++.+. +.++|++||++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 9764444 5688888764 248999999964
No 424
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.39 E-value=1.2e-12 Score=134.64 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=105.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEE--CCEe-CC-hhccC---cEEEEccCCcCCCCCCHHHHH
Q 006330 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (650)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~--~G~~-~~-~~~~~---~i~yV~Q~~~l~~~lTV~enl 250 (650)
+.+.+||.++|+||+|+|||||++.|.+..........+++ -+.+ .. .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 47889999999999999999999999975532111122222 1111 11 11111 1222222221 111111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHH----------H-cCCCccccccccCccCCCCCHHH--------HHHHHHHHHHh
Q 006330 251 TYAALLRLPNTLTKQQKEKRAIDVIN----------E-LGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (650)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~----------~-lgL~~~~~t~vg~~~~~~LSGGe--------rqRv~IA~aL~ 311 (650)
..... ..+.++...+ + -.+...+++..+. ....+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 10000 0000000000 0 0122333443332 234589999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~-i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999766554 54 55555457899999999875 578999999999987
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.3e-12 Score=131.05 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006330 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (650)
Q Consensus 300 erqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~s~~~i~~~L~~l~~ 343 (650)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.30 E-value=5.2e-12 Score=134.41 Aligned_cols=185 Identities=26% Similarity=0.369 Sum_probs=125.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh--------------------hccC--cEEEEccCC
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------------------SLKS--KIGFVTQDD 238 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------------------~~~~--~i~yV~Q~~ 238 (650)
+||++.+++|-||-||||-+++++|++.+ +..+. .++-+... .++. +.-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nlg~~--~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRY--DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CCCCC--CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 58999999999999999999999998753 32221 01111100 0110 011222222
Q ss_pred cCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 006330 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (650)
Q Consensus 239 ~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 318 (650)
... ..+|.++|. ....++...++++.+.|.+..+..+ ..|||||-||.+||.+.+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeE
Confidence 111 123444332 1122234566777777776666543 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC-----CeEEEecCHHHHHHHH
Q 006330 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAMAYF 387 (650)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~-----G~iv~~G~~~~~~~~f 387 (650)
+|||.+-||...+..--..++.+....+=||++-||++- +--+.|-|.+|.. |-+..--+..+....|
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999999999998888999999999874 4456799998875 3443333445544444
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.30 E-value=2.4e-11 Score=134.14 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=113.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeC---Ch---------hccCcEEEEcc
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~yV~Q 236 (650)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999854 3 3579999965433 21 24567899986
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH-HHHhhCCC
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA-~aL~~~P~ 315 (650)
.+.-. -.+....+.+ -.+.|.+..-| .|.++- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g----~~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQG----LNVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCC----CcEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 0111111111 01122222222 122211 01121 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHH
Q 006330 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (650)
Q Consensus 316 iLlLDEP--TsgLD~~s~~~i~~~L~~l~~--~g~-----TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~ 382 (650)
+.+.|| |+|+|+.....+.+.++++.. .|. ||++.+|+++. ..||++..|.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999873 575 99999999874 6799999999999999998766
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=2e-11 Score=123.71 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=87.1
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~en 249 (650)
+.+.+|+++.+++|++++|.||||+||||++++|++.... ...|...... .-.++|..|= |..+...|+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~i---~~~~~~~d~ 86 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDSV---LTRMGASDS 86 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccceE---EEEecCccc
Confidence 5689999999999999999999999999999999983222 2356543221 1123333331 111111111
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 006330 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (650)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (650)
+. .++| ..|-+|++-...-+.+|+++|||||.+|.|
T Consensus 87 ~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 87 IQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 10 0111 223344444444456899999999999988
Q ss_pred HHHHHHH-HHHHHHHHHC-CCEEEEEecCCC
Q 006330 328 STTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (650)
Q Consensus 328 ~~s~~~i-~~~L~~l~~~-g~TvI~~~H~~~ 356 (650)
+.....+ ...++.+.+. +.++|++||++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7776664 5667777765 889999999964
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=6.4e-12 Score=143.94 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 45689999999
Q ss_pred eCCe
Q 006330 370 GKGS 373 (650)
Q Consensus 370 ~~G~ 373 (650)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=141.69 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh
Q 006330 293 VRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~ 361 (650)
+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.|||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4679999999999999887 599999999998 789999999999999998 5889999999964 457
Q ss_pred hcCEEEEEeC-CeE
Q 006330 362 KFDKLILLGK-GSL 374 (650)
Q Consensus 362 ~~D~iivL~~-G~i 374 (650)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 543
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.24 E-value=1.8e-11 Score=139.54 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 294 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
+.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+||++||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 789999999975 45899999999
Q ss_pred eCCe
Q 006330 370 GKGS 373 (650)
Q Consensus 370 ~~G~ 373 (650)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 432
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2e-11 Score=149.23 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 006330 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (650)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~ 360 (650)
+.++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++.+.|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4567899999999999999986 79999999999999999999999999999888999999999965 467
Q ss_pred hhcCEEEEEeCC
Q 006330 361 HKFDKLILLGKG 372 (650)
Q Consensus 361 ~~~D~iivL~~G 372 (650)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
No 433
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.24 E-value=1e-12 Score=129.42 Aligned_cols=154 Identities=28% Similarity=0.499 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006330 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (650)
Q Consensus 491 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (650)
+|++.+++|+++. +|++... ...++..++.++++|.+|.+.+ ++.+++ ++.|++++.+....+............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999986 6888666 7888999999999999999886 334445 7788888877766655555555778899
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006330 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQVCPFITTDKIN 648 (650)
Q Consensus 569 r~i~~rE~~~g~Y~~~ay~lAk~l~~lP~~~~~~~~f~~i~Y~m~gl~~~~~~f~~f~l~~~l~~~~~~~lG~~~~~~~~ 648 (650)
+..+.||+.++.|++.+|++|+.+.+++..++.++++..+.|++.|++.+ +|+.+++.++++.+++.++|++++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999987 6777788888888899999999887654
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.22 E-value=1.4e-11 Score=145.15 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCC
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G 372 (650)
+.+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999999888854 677777779999999999542 33334554443 45
Q ss_pred eEEE
Q 006330 373 SLLY 376 (650)
Q Consensus 373 ~iv~ 376 (650)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5554
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=2.2e-10 Score=130.56 Aligned_cols=138 Identities=23% Similarity=0.388 Sum_probs=103.3
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH------HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC-
Q 006330 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN- 313 (650)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~- 313 (650)
+..|++.|.+.|...+.+... .....+..+.+ +|..+||.... .++....|||||.||+-||..|=++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 346788888888766543211 11111222222 33445664321 2344568999999999999999765
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE------eCCeEEEecCHHHHHH
Q 006330 314 -PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (650)
Q Consensus 314 -P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL------~~G~iv~~G~~~~~~~ 385 (650)
-=+++||||+-||-+..-.++++.|++|.+.|-|+|++-||.. +...||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3478999999999999999999999999999999999999954 67899999988 4689999999999985
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.16 E-value=2.9e-10 Score=115.89 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhcc
Q 006330 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (650)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-L~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~ 257 (650)
-+++|+++.|.|||||||||| ++++.+... .| .++.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 389999999999999999999 688886332 12 124555532 25555555443322
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 006330 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL----DST 329 (650)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgL----D~~ 329 (650)
. .. ++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 10000010 1 236777666655544433 369999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhhcCEEEEEe
Q 006330 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (650)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~~H~~~~------~i~~~~D~iivL~ 370 (650)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998878877776654320 1234567777776
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.15 E-value=4e-10 Score=110.03 Aligned_cols=78 Identities=19% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEecCCCh------
Q 006330 293 VRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS------ 357 (650)
Q Consensus 293 ~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~------ 357 (650)
+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 4578999998 4444555667999999999999999 888888889999988889999999998653
Q ss_pred --HHHhhcCEEEEEe
Q 006330 358 --RLFHKFDKLILLG 370 (650)
Q Consensus 358 --~i~~~~D~iivL~ 370 (650)
.+...||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567889999987
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=1.3e-10 Score=117.41 Aligned_cols=135 Identities=20% Similarity=0.237 Sum_probs=88.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHH
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~e 248 (650)
++.+-+|+++.+++|++++|.||||+||||+++.+++...-. ..| .++... ..+++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la-~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA-QMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH-HcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 457899999999999999999999999999999998742210 112 111111 1112222 22222222233
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPTsgL 326 (650)
++.. ++| .-|-+|++-....+.+|++++||||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2221 111 12344444444445689999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CCEEEEEecCCC
Q 006330 327 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (650)
Q Consensus 327 D~~s~~~i~~~-L~~l~~~-g~TvI~~~H~~~ 356 (650)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99998888887 7777765 899999999954
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.13 E-value=6.4e-11 Score=118.14 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988766 899999999999999999999999887766789999999864
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.09 E-value=8.5e-11 Score=114.38 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeC
Q 006330 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (650)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~P~iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~ 371 (650)
..+||+++-++.+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 44444 345666666666799999999983 34567999999999
Q ss_pred CeEEEec
Q 006330 372 GSLLYFG 378 (650)
Q Consensus 372 G~iv~~G 378 (650)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.3e-10 Score=137.81 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.6
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCE
Q 006330 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (650)
Q Consensus 292 ~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ 365 (650)
.+..|||||++ |++||++++.+|+++||||||++||+..+..+.+.|..+...+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555566788999999999999999999999999999998776789999999963 6789999
Q ss_pred EEEEeC
Q 006330 366 LILLGK 371 (650)
Q Consensus 366 iivL~~ 371 (650)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=3.3e-10 Score=141.37 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=78.9
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHH---HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH------HHHHHHHHh
Q 006330 241 FPHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEII 311 (650)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq------Rv~IA~aL~ 311 (650)
|. .|+.|||.+ . +. .+.+ ....+...++.. +..+ |+.++.. ..||||||| |++||++++
T Consensus 1154 ~~-~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~--~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1154 YR-GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDMR--GRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred cC-ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCCC--CCCchhhhhHhhHhHHHHHHHHHh
Confidence 44 499999987 2 11 1111 112223333332 2333 5655432 479999999 999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCChHHHhhc
Q 006330 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (650)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~~H~~~~~i~~~~ 363 (650)
.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||++. .+..+|
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999999988742 3789999999965 354443
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.04 E-value=6e-10 Score=118.45 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=94.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEe-CChhccCcEEEEccCCcCCCCCCHHHHHHHH
Q 006330 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (650)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~ 253 (650)
=+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.+.+ +....+..+.++.+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 3668899999999999999999999999998653 445666664311 00000111222211100
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 006330 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (650)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~ 333 (650)
. + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 ----------------------------~------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 ----------------------------Q------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ----------------------------C------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 001111 1134556778999999999996 34
Q ss_pred HHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHHH
Q 006330 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (650)
Q Consensus 334 i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~~ 384 (650)
+.+.++.+...+.+++.++|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766643346799999976 45678999999999999888887765
No 444
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.04 E-value=6.2e-10 Score=135.92 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=68.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh
Q 006330 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (650)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~ 362 (650)
+.+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4567899999999999999996 89999999999999999999999999999888999999999743 23344
Q ss_pred cCEEEEEeC
Q 006330 363 FDKLILLGK 371 (650)
Q Consensus 363 ~D~iivL~~ 371 (650)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.03 E-value=5e-09 Score=124.87 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.7
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChH--------HHhhcCEEEEEeCCeEEEecCHH
Q 006330 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (650)
Q Consensus 311 ~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~--------i~~~~D~iivL~~G~iv~~G~~~ 381 (650)
..+|.++++|||+.+| |+..+..+.+.++++.+.|.++|++||++... +.+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998642 1367999999999998776643
Q ss_pred HHHHHHHhcCC
Q 006330 382 EAMAYFSSIGC 392 (650)
Q Consensus 382 ~~~~~f~~~g~ 392 (650)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=1.5e-09 Score=102.23 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH
Q 006330 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (650)
Q Consensus 296 LSGGerqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~ 358 (650)
.+.++.+++..+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666678888999999999999999995 4555555666666555555689999999987543
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=2.1e-09 Score=118.12 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=115.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccC
Q 006330 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (650)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (650)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|++... +..|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer------- 193 (432)
T PRK06793 131 FEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER------- 193 (432)
T ss_pred hheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC-------
Confidence 55566665441 234688885 9999999999999999999999999998542 345666555542
Q ss_pred cEEEEccCCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 006330 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (650)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~a 309 (650)
..+|+|.+..-. ..-|+.+. ..+ ....+-|.|+|+|++.+.+
T Consensus 194 -------------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 -------------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred -------------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 246777654321 11122110 111 1135689999999999988
Q ss_pred Hh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEeCCeEEEecCH
Q 006330 310 II-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (650)
Q Consensus 310 L~-------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~ 380 (650)
.+ .++-++++|+||+..|+. .++-..+.+.-..|.+..+.+|- + ++++|.-...+|.|...++.
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 87 689999999999999997 55555666655458888888884 3 34455555678888766653
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=7.8e-09 Score=100.10 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=61.3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhc-CEEE
Q 006330 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLI 367 (650)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~-D~ii 367 (650)
|++.....|-||-=---+.+. ..+.-|+|||||-++|.|.-+.+++..|+++++.|.-+|+.||.|-- ..+- -.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL--lAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL--LAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh--eeCCCcEEE
Confidence 334445689998654444444 45678999999999999999999999999999999999999998742 2221 3555
Q ss_pred EEeCCe
Q 006330 368 LLGKGS 373 (650)
Q Consensus 368 vL~~G~ 373 (650)
-++.+-
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 555543
No 449
>PRK01156 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.9e-09 Score=130.34 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.6
Q ss_pred cCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-CEEEEEecCCChHHHhh
Q 006330 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 362 (650)
Q Consensus 292 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~-g-~TvI~~~H~~~~~i~~~ 362 (650)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.|+... .. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356899999999975 589999999999999999999999999999998654 33 3 48999999964 4578
Q ss_pred cCEEEEEe
Q 006330 363 FDKLILLG 370 (650)
Q Consensus 363 ~D~iivL~ 370 (650)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.92 E-value=5.7e-09 Score=103.97 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEEe
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL~ 370 (650)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. ....||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 665543333 345569999999999763 46789887664
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=2e-09 Score=132.92 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.8
Q ss_pred cCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEE
Q 006330 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (650)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ii 367 (650)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57899997
Q ss_pred EEe
Q 006330 368 LLG 370 (650)
Q Consensus 368 vL~ 370 (650)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.88 E-value=1.8e-08 Score=102.71 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=98.1
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHH
Q 006330 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (650)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~en 249 (650)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| .++.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 445554 56799999999999999999999998852111 1 11 2345555432 33333
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 006330 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (650)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPTsg-- 325 (650)
+.-...... .. .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 322111111 00 01110 011111111110 112357788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhhcCEEEEEeC
Q 006330 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 371 (650)
Q Consensus 326 -LD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~------~i~~~~D~iivL~~ 371 (650)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777779999999998643 13455677776653
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.79 E-value=1.7e-08 Score=112.45 Aligned_cols=151 Identities=22% Similarity=0.280 Sum_probs=93.0
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHH
Q 006330 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (650)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl 250 (650)
.++++.+..+++|++++++||||+||||++..|++++. ...|. .+|++|.+|. + ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 45677788888999999999999999999999998542 12231 2589999986 2 46899999
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 006330 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (650)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPTs 324 (650)
.+.+.... ++........+..+...++.+....+| .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766532 111111122223334456665444333 232222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 006330 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (650)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~g~TvI~~~H 353 (650)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344555555445665555555
No 454
>PRK02224 chromosome segregation protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=122.97 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHH
Q 006330 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (650)
Q Consensus 293 ~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~~H~~~~~i 359 (650)
+..||||||+ |++|+++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 99999998864 3 67999999999999999999999999886664 8999999975 3
Q ss_pred HhhcCEEEEEeCC
Q 006330 360 FHKFDKLILLGKG 372 (650)
Q Consensus 360 ~~~~D~iivL~~G 372 (650)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5779999999753
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.78 E-value=9.7e-09 Score=126.98 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEE
Q 006330 293 VRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (650)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iiv 368 (650)
+..||||||++++||++++. +|+++|||||+++||+.....+.+.|+++++ +..+|++||++. ++..||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 56799999999999999985 6899999999999999999999999999865 578999999964 5689999988
Q ss_pred EeC
Q 006330 369 LGK 371 (650)
Q Consensus 369 L~~ 371 (650)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 764
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.76 E-value=6.1e-09 Score=114.55 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (650)
+.+|++||+++++||+++|+|||||||||||+ +|.. .++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5544 3454558999999875
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.75 E-value=5.4e-08 Score=99.63 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=83.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC-EeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 006330 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (650)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (650)
|.+..|+||+|+|||||.--++=.. ..|.=++++ ... .-..++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6789999999999999998887321 123211111 110 1123344544322
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 006330 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (650)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPTs- 324 (650)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555433222211 2245555555443 335799999999 775
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCC
Q 006330 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (650)
Q Consensus 325 -----gLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~ 356 (650)
.+|+.....+++.|++++++ |.|||++.|..-
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 899999999863
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=4e-07 Score=82.29 Aligned_cols=118 Identities=32% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhccCCCC
Q 006330 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (650)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (650)
++..+.|+||+|+||||+++.|+..+.... .+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV-----------------LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC-----------------HHHHH------------
Confidence 467899999999999999999997654211 134444443221100 00000
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 006330 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ----- 336 (650)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~----- 336 (650)
.... ........+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIV-----------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhh-----------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000 00113578888888888888888899999999999999998776664
Q ss_pred -HHHHHHHCCCEEEEEec
Q 006330 337 -MLQDIAEAGKTVVTTIH 353 (650)
Q Consensus 337 -~L~~l~~~g~TvI~~~H 353 (650)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22222344778888888
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.57 E-value=2.3e-07 Score=100.26 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
+++++|-.+|+++++||+. |+++....++ .+..|.+|+.++|..+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 34569999999999653 4666777654
No 460
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.57 E-value=6.6e-07 Score=107.40 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh--hcCEEEEEeCCeEE
Q 006330 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (650)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~--~~D~iivL~~G~iv 375 (650)
|++++..+|.++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+ .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999764 333 23433334444444
No 461
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.53 E-value=3.2e-08 Score=100.39 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=33.6
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCE
Q 006330 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (650)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~ 221 (650)
-|+.+ .+=+++|++++|.||+|+|||||...++...... ..+.+++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEcc
Confidence 45663 5679999999999999999999988655211111 1344666553
No 462
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.51 E-value=9.2e-07 Score=98.15 Aligned_cols=174 Identities=18% Similarity=0.230 Sum_probs=106.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh------------hccCcEEEEcc
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yV~Q 236 (650)
+..+++++ +.+.+||.++|+|+||+|||||+++|++... +..|.+...|..-++ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35799999 9999999999999999999999999998543 335666665543221 01122223322
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCC
Q 006330 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINP 314 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL--~~~P 314 (650)
-+. ++.+-. ......-.+.+.+...| .|.++- ..+|+- .|+|+ +.
T Consensus 227 ~d~-----~p~~r~------------~~~~~a~t~AE~frd~G----~~Vll~---~DslTr-------~A~A~REis-- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------------KGAYVATAIAEYFRDQG----KDVLLL---MDSVTR-------FAMAQREIG-- 273 (440)
T ss_pred CCC-----CHHHHH------------HHHHHHHHHHHHHHHCC----CCEEEE---EeChHH-------HHHHHHHHH--
Confidence 211 110000 00111112223333222 232221 112221 11111 11
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEecCCChHHHhhcCEEEEEeCCeEEEecCHHHH
Q 006330 315 SLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (650)
Q Consensus 315 ~iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~-------TvI~~~H~~~~~i~~~~D~iivL~~G~iv~~G~~~~~ 383 (650)
+.+.|| +.|+|+.....+-+++.+....+. ||++.+||... ..+|++.-+.+|+++..+...+.
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 334675 459999999999999998876666 88889999753 56899999999999999887664
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=1.2e-07 Score=104.57 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=66.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ceEEEECCEeCCh----------hccCcEEEEcc
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~----------~~~~~i~yV~Q 236 (650)
...+|+++ +++.+|++++|+||||+|||||+++|+|.. .+.. -|.|-.+|.++.. ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35799999 999999999999999999999999999854 3321 2445555554432 12456899999
Q ss_pred CCcCCCCCCHHHHHHHHHhc
Q 006330 237 DDVLFPHLTVKETLTYAALL 256 (650)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~ 256 (650)
+...+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999899999999876653
No 464
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=1.7e-07 Score=101.95 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999753 679999999864
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=98.49 E-value=2.3e-07 Score=100.52 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhhcCE
Q 006330 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (650)
Q Consensus 295 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~~D~ 365 (650)
-+|+||+|++.||..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 24555555543 57999
Q ss_pred EEEEeCCeEEEe
Q 006330 366 LILLGKGSLLYF 377 (650)
Q Consensus 366 iivL~~G~iv~~ 377 (650)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.48 E-value=3.5e-07 Score=90.15 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=62.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC-hhccCcEEEEccCC--cCCCCCCHHH
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~--~l~~~lTV~e 248 (650)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+.+-. ...+..++++.|.+ ...+..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4455667789999999999999999999999998653 45799999774321 12234567766654 3466789999
Q ss_pred HHHHHHhcc
Q 006330 249 TLTYAALLR 257 (650)
Q Consensus 249 nl~~~~~~~ 257 (650)
.+....+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876654
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.47 E-value=9.7e-09 Score=115.78 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=98.6
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCcceEEEECCEeCChhc---cCcEEEEccCCcCCCCC
Q 006330 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVLFPHL 244 (650)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~--G~~~~~~~~G~I~~~G~~~~~~~---~~~i~yV~Q~~~l~~~l 244 (650)
+-|+.+ .+=+++|..+.|.||+|||||||..-++ |... .. +.-+++....-.+++ .+.+|+-.++..--.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 446665 5679999999999999999999988763 3211 01 233555444322222 223454443211000
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 006330 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (650)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEP 322 (650)
++.+ ... .+. .....+++.+++.+..+.. ...+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~~---~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LDA---SPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Eec---Cch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 000 000 0001122333443333332 247999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH-------H-HhhcCEEEEEe
Q 006330 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (650)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~-------i-~~~~D~iivL~ 370 (650)
...+..+.+.++.+++.|+|+|+++|++... + ..+||.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999888899999999986420 1 45789999987
No 468
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.42 E-value=7.8e-07 Score=107.80 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=69.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhh
Q 006330 291 SFVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (650)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~~i~~~ 362 (650)
+.+..|||||+=.++||.+|+ .+ =++|||||||..||+.+...++++|.++...+.+|++|||+. ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 356789999999988887764 35 589999999999999999999999999998899999999994 46789
Q ss_pred cCEEEEEeC
Q 006330 363 FDKLILLGK 371 (650)
Q Consensus 363 ~D~iivL~~ 371 (650)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998875
No 469
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.37 E-value=9.7e-07 Score=97.52 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC---EeC
Q 006330 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (650)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~ 223 (650)
+..++.++++..|. ....+++.++ .|.+||.++|+||||+|||||+++|++.. . +..|.|.+.| +++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 34689999998873 2357899996 99999999999999999999999999743 3 4578888864 544
Q ss_pred Ch--------hccCcEEEEccCCc
Q 006330 224 SK--------SLKSKIGFVTQDDV 239 (650)
Q Consensus 224 ~~--------~~~~~i~yV~Q~~~ 239 (650)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12467999999764
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.36 E-value=4.1e-07 Score=90.24 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=65.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhc-cCCCCcc
Q 006330 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPNTLT 263 (650)
Q Consensus 185 ~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~-~~~~~~~ 263 (650)
+++|.||||||||||.+.|.+.+. +|. +.++++|+... .++..+........ ..|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 589999999999999999998541 222 34444444332 23333332221110 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006330 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (650)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (650)
..+...+.+..+...+..+. .....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12233455555544332222 224678888776555 5688999999999999986
No 471
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.32 E-value=1.2e-06 Score=105.11 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=88.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcE-EEEccCCcCCCCCCHHH
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTVKE 248 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i-~yV~Q~~~l~~~lTV~e 248 (650)
..|-+|+++. ..+.++.|.|||++||||+||.++-... -.++ .|||-+..-+ .+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~i---~~~d 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESARI---GIVD 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceEe---cccC
Confidence 4577888888 6778999999999999999999873211 1112 2344332111 1111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---C
Q 006330 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---T 323 (650)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEP---T 323 (650)
.| ...+|-. |. ...++|-=+.....++..|-. +++++|+||| |
T Consensus 652 ~I------------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 RI------------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred ee------------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 11 1111211 11 124677777777777777655 8999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhhcCE
Q 006330 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (650)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~-g~TvI~~~H~~~~~i~~~~D~ 365 (650)
+.+|..+ .....++.+.+. +.++|++||.. ++.+++++
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9999554 455566666665 58999999993 46677765
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.29 E-value=4e-06 Score=104.10 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=91.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHH
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~ 251 (650)
+..=+++..+++++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.++...+ +..
T Consensus 196 l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~ 264 (1153)
T PLN03210 196 MSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMK 264 (1153)
T ss_pred HHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chh
Confidence 33445677889999999999999999999999876543 34788988763221100 0 0000100000 000
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006330 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (650)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (650)
. ...++.+.++++..++. +.. .++.|+|+ ..++-+|+||+- |...
T Consensus 265 ~------------~l~~~~l~~il~~~~~~-----------~~~-~~~~~~~L------~~krvLLVLDdv----~~~~- 309 (1153)
T PLN03210 265 L------------HLQRAFLSEILDKKDIK-----------IYH-LGAMEERL------KHRKVLIFIDDL----DDQD- 309 (1153)
T ss_pred H------------HHHHHHHHHHhCCCCcc-----------cCC-HHHHHHHH------hCCeEEEEEeCC----CCHH-
Confidence 0 01112233333333221 111 25666663 355667888984 4333
Q ss_pred HHHHHHHHHHH---HCCCEEEEEecCCChHHHhh-cCEEEEEeCCeEEEecCHHHHHHHHHhcCC
Q 006330 332 LRIVQMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (650)
Q Consensus 332 ~~i~~~L~~l~---~~g~TvI~~~H~~~~~i~~~-~D~iivL~~G~iv~~G~~~~~~~~f~~~g~ 392 (650)
.++.|.... ..|.+||+|||+... +... +|+++-+. .=+.+++.+.|....+
T Consensus 310 --~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 --VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAF 365 (1153)
T ss_pred --HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhc
Confidence 344444332 348899999999542 2222 57665553 1245678888876544
No 473
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=2.3e-05 Score=93.87 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 006330 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (650)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~ 357 (650)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999998889999999999753
No 474
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=109.75 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 006330 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (650)
Q Consensus 293 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~ 355 (650)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 45799999999999999999999999999887 78999999873
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.24 E-value=7.1e-07 Score=87.37 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=46.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChh--cc-CcEEEEccCCcCCCCCCHHHHHHHH
Q 006330 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (650)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~--~~-~~i~yV~Q~~~l~~~lTV~enl~~~ 253 (650)
+||+++|+||||||||||+++|+|++. -+.++|.++... .+ ...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998643 157888776421 21 2356777765555555666666553
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.16 E-value=4.6e-05 Score=79.22 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=32.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G 205 (650)
-+.|+++.+-+.+|+++.|.||+|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457888888999999999999999999999998874
No 477
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.15 E-value=6.3e-05 Score=90.31 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=41.9
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 006330 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (650)
Q Consensus 311 ~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~~H~~~ 356 (650)
-.+|.++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
No 478
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=5.7e-06 Score=90.04 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=45.9
Q ss_pred eEEEEeEEEEEeecccccccccccee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006330 149 YLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (650)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (650)
.++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 130 ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 699999999983 2346886 999999999999999999999999999999643
No 479
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.09 E-value=7.7e-06 Score=90.59 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECC---EeCCh----hc---cCcEEEE-----
Q 006330 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SL---KSKIGFV----- 234 (650)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~~~----~~---~~~i~yV----- 234 (650)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| +++.+ .+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999985532 2347777755 44421 12 1235555
Q ss_pred ccCCc--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006330 235 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (650)
Q Consensus 235 ~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (650)
+|++. +.+.+ +...+.-..+......+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 33333 333333222222111123455677788888888884
No 480
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.08 E-value=9e-05 Score=81.01 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=101.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhcc
Q 006330 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (650)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~ 257 (650)
+-|++| ++.|+|.+=-||||||++|.--.|+.. -| ||+..-- -......+--+|-- .
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHi-pG----DGRE~VV-T~~~avkirAEDGR----~------------ 296 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHI-PG----DGREFVV-TDPDAVKIRAEDGR----S------------ 296 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCC-CC----CCceEEE-ECCCceEEEecCCc----e------------
Confidence 457888 999999999999999999985455321 12 3322100 00000011111100 0
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHH
Q 006330 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTAL 332 (650)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgL-----D~~s~~ 332 (650)
+. ...+--++. +|+.+.||.- -.-.+=||-.-|=.+|..||=...++||+||=||+- |...+.
T Consensus 297 ----V~----~vDISpFI~--~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~ 364 (448)
T PF09818_consen 297 ----VE----GVDISPFIN--NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQA 364 (448)
T ss_pred ----Ee----CccchHHHh--hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHH
Confidence 00 001122333 3455556541 112457999999999999999999999999999975 555555
Q ss_pred HH----------HHHHHHHH-HCCCEEEEEecCCChHHHhhcCEEEEEeCCeE
Q 006330 333 RI----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 333 ~i----------~~~L~~l~-~~g~TvI~~~H~~~~~i~~~~D~iivL~~G~i 374 (650)
.+ ++.++.+. +.|.+.|+++-- +...+..+|+|++|++=+.
T Consensus 365 Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 365 LVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 54 55677774 458877777765 5568899999999988654
No 481
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.05 E-value=3.4e-05 Score=70.37 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCC
Q 006330 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (650)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~~H~~~ 356 (650)
++..........++.++++||.-.. ++.....+.+.+..... .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555566778999999998765 56666778888877653 4678888888643
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=98.02 E-value=5.7e-06 Score=89.86 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC-hhccCcEEEEccCCcCCCCCCHHHHH
Q 006330 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (650)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~enl 250 (650)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++.... ...++++.+++|+..+++. ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666678999999999999999999999998654 45799999875432 2335679999999888864 555555
Q ss_pred HH
Q 006330 251 TY 252 (650)
Q Consensus 251 ~~ 252 (650)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.01 E-value=7e-06 Score=66.24 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=29.2
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006330 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (650)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLL~~L~G~~~ 208 (650)
.++..+++.+ |+++.|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456777775 56999999999999999999985444
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.01 E-value=6e-05 Score=73.85 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 006330 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (650)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~ 344 (650)
.+.+.++..+++- -.+++ +...+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.+.
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555543 34443 99999999999999999987754
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.00 E-value=6.7e-06 Score=83.72 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=49.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceE----EEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHh
Q 006330 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (650)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~----I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~ 255 (650)
-.+..+++|.||||||||||++.|++.+. +.+|. |.+|+.......+...+++++.+. ...+++.+.+.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRR 106 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHH
Confidence 34578999999999999999999998764 34676 555664444334445677766433 345566666655443
Q ss_pred c
Q 006330 256 L 256 (650)
Q Consensus 256 ~ 256 (650)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=5.1e-06 Score=82.67 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=43.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccC
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~ 237 (650)
++|++++|+|+||||||||.+.|++.+.. ...|.+.++|.++.+.+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67899999999999999999999986642 234789999987754444445665554
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.96 E-value=1.8e-05 Score=68.93 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=36.6
Q ss_pred CCCCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006330 293 VRGVSGGERK-RVCIGNEI------II------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (650)
Q Consensus 293 ~~~LSGGerq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (650)
..++|||||| .+.++.++ -. .|.+++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 44444332 22 3799999999999999999999999874
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.94 E-value=3e-05 Score=86.79 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.6
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEecCCCh-------HHHhhcCEEEEEeCCe
Q 006330 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (650)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~s~~~i~~~L~~l~~-~g~TvI~~~H~~~~-------~i~~~~D~iivL~~G~ 373 (650)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999765421 1 2234556666777764 59999999996432 1456899999998654
No 489
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.94 E-value=1e-05 Score=75.98 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006330 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (650)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL-----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l 341 (650)
.+.+.+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++.+.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445565554331 12222 2345789998887666553 2345555 99999999999999888764
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.93 E-value=4.1e-06 Score=83.87 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (650)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
No 491
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.93 E-value=8e-06 Score=86.03 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=49.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEE---CCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhcc
Q 006330 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (650)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~---~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~~ 257 (650)
-.++||.||||||||||+++|.+.+...+.+|.|.+ ||.......++..++. |+..+.+.+++.+.+.+-..++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 369999999999999999999986642233577666 4433333333445554 6656666778887777655443
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.93 E-value=1e-05 Score=79.62 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCC
Q 006330 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (650)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (650)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25777776654
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.91 E-value=1.4e-05 Score=78.86 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh-HHHhhcCEEEEEeCC
Q 006330 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (650)
Q Consensus 298 GGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H~~~~-~i~~~~D~iivL~~G 372 (650)
-|+-+|..||..+..+|+.+..+| +.+||....++.+.+++..+.|.+||+.+|.+.. .+...||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988777 7899999999999998876557799999998732 356789999887653
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.87 E-value=1.1e-05 Score=86.26 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCCh----------hccCcEEEEccCCcCCCCCCHHHHH
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----------SLKSKIGFVTQDDVLFPHLTVKETL 250 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----------~~~~~i~yV~Q~~~l~~~lTV~enl 250 (650)
++|++++++||||+||||++..|++.+. ..+|+|.+.+.|..+ ..+..+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5799999999999999999999998664 346799988877521 1245688998865555544566666
Q ss_pred HHH
Q 006330 251 TYA 253 (650)
Q Consensus 251 ~~~ 253 (650)
...
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 543
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=97.87 E-value=2.2e-05 Score=86.60 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=53.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cceEEEECCEeCCh--------hccCcEEEEccCC
Q 006330 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK--------SLKSKIGFVTQDD 238 (650)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~--------~~~~~i~yV~Q~~ 238 (650)
+.++++++ +.+.+||+++|+|+||+|||||+++|++. ..+. .-|.|-.+|+++.. ...+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~-~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEH-SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcC-CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 99999999999999999999999999974 3332 12889899988642 1236788887754
No 496
>PRK13764 ATPase; Provisional
Probab=97.84 E-value=5.6e-05 Score=86.76 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=48.2
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEec---------------CCChHHHhhcCEEEEEeCCeE
Q 006330 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------------QPSSRLFHKFDKLILLGKGSL 374 (650)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~~H---------------~~~~~i~~~~D~iivL~~G~i 374 (650)
|..+|+++++||.-. .++ ++.+..++..|..++.+.| ++. .+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999984 333 4444445555888999999 654 46678999999999999
Q ss_pred --EEecCH
Q 006330 375 --LYFGKA 380 (650)
Q Consensus 375 --v~~G~~ 380 (650)
+|.++.
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 777764
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.83 E-value=4.7e-05 Score=88.42 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=67.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC------CcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHHHHhc
Q 006330 183 GEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (650)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~------~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~ 256 (650)
.+.++|+||||+|||||+++|.+..... ...+-|.+||..+....+. + .+-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcCC--
Confidence 4569999999999999999998743210 1123466665443100000 0 1111110
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006330 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (650)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (650)
.. +.....+.+.++..|+.+..+.. +..+||| +||||| +..||+..+..+.+
T Consensus 236 -----~~-~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----VH-DPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----cc-HHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 11 11122344556777876555433 4578888 999999 89999999999998
Q ss_pred HHHH
Q 006330 337 MLQD 340 (650)
Q Consensus 337 ~L~~ 340 (650)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.82 E-value=0.0001 Score=80.12 Aligned_cols=124 Identities=23% Similarity=0.379 Sum_probs=71.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcceEEEECCEeCCh---hccCcEEEEccCCcCCCCCCHHHHHHHHHhc
Q 006330 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (650)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lTV~enl~~~~~~ 256 (650)
++|.+++|.||+||||||+|++|++.+.. ++..+.|.....|+.- ..+...+.+.|... +. +.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~~----~~------- 198 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--PR----HL------- 198 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--cc----cc-------
Confidence 58999999999999999999999975532 2223355544444321 11222344544321 00 00
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006330 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (650)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (650)
.++..+ |-.+|=.+|+++++.|-- |.++....++
T Consensus 199 -------------------------------------~~~~~~------l~~aLR~~Pd~i~vGEiR---d~et~~~al~ 232 (358)
T TIGR02524 199 -------------------------------------NNFAAG------VRNALRRKPHAILVGEAR---DAETISAALE 232 (358)
T ss_pred -------------------------------------cCHHHH------HHHHhccCCCEEeeeeeC---CHHHHHHHHH
Confidence 001111 112555689999999943 6665544433
Q ss_pred HHHHHHHCCCEEEEEecCCChHHHhhcCEEEEE
Q 006330 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (650)
Q Consensus 337 ~L~~l~~~g~TvI~~~H~~~~~i~~~~D~iivL 369 (650)
.+..|..|+.+.|-.+ +....+|++-+
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~ 259 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVGS 259 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence 2346888999999754 45555655443
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.81 E-value=9.3e-05 Score=80.82 Aligned_cols=30 Identities=43% Similarity=0.730 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006330 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (650)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (650)
+=+.+|+++.|.|++|+|||||+..++...
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999998644
No 500
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.75 E-value=2.5e-05 Score=88.47 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=51.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcceEEEECCEeCChhccCcEEEEccCCcCCCCCCHHHHHHH
Q 006330 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (650)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~enl~~ 252 (650)
-+++|.||||||||||.+.|++.+ + ..|.|.+||.... .+.+.+.+|++..++..++.++|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL--p-~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM--P-SIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC--C-CcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence 489999999999999999999865 2 3689999997532 2346788999988888899999864
Done!