BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006331
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 183/403 (45%), Gaps = 65/403 (16%)
Query: 202 QEIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLS 260
+EIR L + +T+ CL + K + + LVL C G DGLA++ +C++LK L+L
Sbjct: 108 EEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 261 KCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI 320
+ ++ V +L Y+ VS ++S CL + V+ S +
Sbjct: 165 E-SDVDDV-------SGHWLSHFPDTYTSLVSLNIS-CLAS------------EVSFSAL 203
Query: 321 KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC----CRKITYASINSIT 376
+ + +LK L L++ V E+L+ ++Q +L +L R Y+ ++
Sbjct: 204 ERLVTRCPNLKSLKLNR--AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 377 KTCTSLTSLRMECCKLVSWEA----FVLIGQQCQYLEELDITENEVNDEGL-KSISRCSK 431
C L C W+A + C L L+++ V L K + +C K
Sbjct: 262 SGCKELR------CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315
Query: 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS--------GITDVGVVAVSHGCPS 483
L +L + I D GL+ + STC L+EL ++ S +T+ G+V+VS GCP
Sbjct: 316 LQ--RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373
Query: 484 LEMINIAYNERITDTSLISLSEC------LRLKVLEIRGCPRIS----AIGLSAIAMGCR 533
LE + + + ++T+ +LI+++ RL ++E + ++ IG AI C+
Sbjct: 374 LESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGL 576
L L + + D + Y++ ++ +++++ +D+G+
Sbjct: 433 DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 137/330 (41%), Gaps = 33/330 (10%)
Query: 290 WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFV 349
W+ A S ++ L+ I+ + V ++ I + K L LS C G + + L+ +
Sbjct: 96 WIEAMSS----SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 350 VQSHKELRKLDI--TCCRKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQ 406
+ + L++LD+ + ++ ++ T TSL SL + C VS+ A + +C
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 407 YLEELDITENEVNDEGLKSISRCSKLSSLKL-GICSNITDE---GLKHVGSTCSMLKELD 462
L+ L + ++ + R +L L G + + + GL S C L+ L
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL- 270
Query: 463 LYRSSGITD---VGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPR 519
SG D + AV C L +N++Y + + L +C +L+ L +
Sbjct: 271 ----SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD--Y 324
Query: 520 ISAIGLSAIAMGCRQLAMLDI--------KKCFNINDNGMIPLAQYSQNLKQINLSYC-S 570
I GL +A C+ L L + + + + G++ ++ L+ + L +C
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQ 383
Query: 571 VTDVGLIALASINCLQNMTILHVVGLTPNG 600
+T+ LI +A NMT + + P
Sbjct: 384 MTNAALITIARNR--PNMTRFRLCIIEPKA 411
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 43/248 (17%)
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
+ D G+E++A C+++R L + P E V+E + + GL SV
Sbjct: 325 IEDAGLEVLASTCKDLREL---------RVFPS-------EPFVMEPNVALTEQGLVSVS 368
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLI----------------KGADYLQQLILAYSFWVS 292
C L+++ L C+ +++ L ++ K DYL L F
Sbjct: 369 MGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--G 425
Query: 293 ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352
A + C + S D + IG + ++ LS++ +G +D + V+
Sbjct: 426 AIVEHCKDLRRLSLSGLLTD-----KVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSG 479
Query: 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412
LRKL+I C A + + +K T + SL M C VS+ A L+GQ+ L
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLET-MRSLWMSSCS-VSFGACKLLGQKMPKLNVEV 537
Query: 413 ITENEVND 420
I E D
Sbjct: 538 IDERGAPD 545
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 52/375 (13%)
Query: 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVG--LSSLIKGADYLQQL-- 283
LE L L+ C G DGL S+ C+ +K L + + G L L + L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199
Query: 284 -ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHGSLKEL---SLSK 337
+ ++ DL N L S+K D + KA N L+E SL++
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN----LEEFCGGSLNE 255
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM--ECCKLVSW 395
G+ ++ ++ V RKL C ++Y N + +R L+
Sbjct: 256 DIGMPEKYMNLVFP-----RKL---CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGST 454
E + Q+C LE L+ T N + D GL+ +++ C +L L++ + G G
Sbjct: 308 EDHCTLIQKCPNLEVLE-TRNVIGDRGLEVLAQYCKQLKRLRI-------ERGADEQG-- 357
Query: 455 CSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLR----LK 510
M E L ++ G++A++ GC LE + + Y IT+ SL S+ L+ +
Sbjct: 358 --MEDEEGL-----VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFR 409
Query: 511 VLEIRGCPRISAI----GLSAIAMGCRQLAMLDIK-KCFNINDNGMIPLAQYSQNLKQIN 565
++ + RI+ + G+ ++ +GC++L + + D G+ + QYS N++ +
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469
Query: 566 LSYCSVTDVGLIALA 580
L Y +D GL+ +
Sbjct: 470 LGYVGESDEGLMEFS 484
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 137/323 (42%), Gaps = 50/323 (15%)
Query: 255 KALNLSKCQNISHVGLSS--------LIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
K +NL + + +GLS L A +++L L Y+ + D + P L+
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS---GVTDEE-------LSFVVQSHKEL 356
++ + + G++ + + LK L + + + G+ DEE L + Q +EL
Sbjct: 322 VLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
Query: 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416
+ + IT S+ SI +L R+ VL+ ++ + + +L +
Sbjct: 381 EYMAVYVS-DITNESLESIGTYLKNLCDFRL-----------VLLDRE-ERITDLPL--- 424
Query: 417 EVNDEGLKSI-SRCSKLSSLKLGI-CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGV 474
D G++S+ C KL + +TD GL ++G ++ + L G +D G+
Sbjct: 425 ---DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGL 480
Query: 475 VAVSHGCPS---LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIG--LSAIA 529
+ S GCP+ LEM ++ER ++ L L+ L ++G R S G L +A
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS---LRYLWVQGY-RASMTGQDLMQMA 536
Query: 530 MGCRQLAMLDIKKCFNINDNGMI 552
+ ++ ++ +N G I
Sbjct: 537 RPYWNIELIPSRRVPEVNQQGEI 559
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 17 EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK-ILKPLC-AETLSRTSARYPFIT 74
+++I ++ ++ DP R S SL CR ++ I+S R+ + LC T R S R+P +
Sbjct: 18 DDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLR 76
Query: 75 QLDLSLCPRA 84
L L PRA
Sbjct: 77 SLKLKGKPRA 86
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 35/256 (13%)
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELD 412
EL K+ C R AS S+ +T M+ V E L G QC L+ L
Sbjct: 28 ELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVI-EVSTLHGILSQCSKLQNLS 86
Query: 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDV 472
+ ++D + ++++ S L L L CS ++ L+ + S+CS L EL+L T+
Sbjct: 87 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 146
Query: 473 GV-VAVSHGCPSLEMINIA-YNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAM 530
V VAV+H ++ +N++ Y + + + L +L +R CP + + LS M
Sbjct: 147 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----------VRRCPNLVHLDLSDSVM 196
Query: 531 GCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYC-SVTDVGLIALASINCLQNMT 589
L ++ F +N L+ ++LS C + L+ L I L+
Sbjct: 197 ----LKNDCFQEFFQLN------------YLQHLSLSRCYDIIPETLLELGEIPTLKT-- 238
Query: 590 ILHVVGLTPNGLVNAL 605
L V G+ P+G + L
Sbjct: 239 -LQVFGIVPDGTLQLL 253
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
+C +++ L L L +++ + + K L L L GC G + L ++ SC L LNL
Sbjct: 78 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 137
Query: 260 SKCQNIS--HVGLSSLIKGADYLQQLILA--YSFWVSADLSKCLHNFPMLQSIKFEDCPV 315
S C + + HV + ++ ++ + QL L+ +DLS + P L + D +
Sbjct: 138 SWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 196
Query: 316 ARSGIKAIGNWHGSLKELSLSKCSGVTDEEL 346
++ L+ LSLS+C + E L
Sbjct: 197 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 227
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 32/208 (15%)
Query: 401 IGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460
I QC L+ L + ++D + ++++ S L L L CS ++ L+ + S+CS L E
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172
Query: 461 LDLYRSSGITDVGV-VAVSHGCPSLEMINIA-YNERITDTSLISLSECLRLKVLEIRGCP 518
L+L T+ V VAV+H ++ +N++ Y + + + L +L +R CP
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----------VRRCP 222
Query: 519 RISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYC-SVTDVGLI 577
+ + LS M L ++ F +N L+ ++LS C + L+
Sbjct: 223 NLVHLDLSDSVM----LKNDCFQEFFQLN------------YLQHLSLSRCYDIIPETLL 266
Query: 578 ALASINCLQNMTILHVVGLTPNGLVNAL 605
L I L+ L V G+ P+G + L
Sbjct: 267 ELGEIPTLKT---LQVFGIVPDGTLQLL 291
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
+C +++ L L L +++ + + K L L L GC G + L ++ SC L LNL
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175
Query: 260 SKCQNIS--HVGLSSLIKGADYLQQLILA--YSFWVSADLSKCLHNFPMLQSIKFEDCPV 315
S C + + HV + ++ ++ + QL L+ +DLS + P L + D +
Sbjct: 176 SWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 316 ARSGIKAIGNWHGSLKELSLSKCSGVTDEEL 346
++ L+ LSLS+C + E L
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 144/342 (42%), Gaps = 67/342 (19%)
Query: 295 LSKCLHNFPMLQSIKFEDCPVARSGIK----AIGNWHGSLKELSLSKC--SGVTDEELSF 348
L L + P L+ + D P+ +G++ + + L++L L C + + E L+
Sbjct: 101 LPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLAS 160
Query: 349 VVQSHKELRKLDITCCRKITYASI----NSITKTCTSLTSLRMECCKLVSWEAFVLIG-- 402
V+++ + L++L ++ I A + + L +LR+E C L L G
Sbjct: 161 VLRATRALKELTVSN-NDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIV 219
Query: 403 QQCQYLEELDITENEVNDEGLKSI-----SRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457
L ELD+ N + D G+ + S S+L +L L C +IT G + + C +
Sbjct: 220 ASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWEC-DITASGCRDL---CRV 275
Query: 458 LKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECL-----RLKVL 512
L+ + +L+ +++A N ++ D L E L +L+ L
Sbjct: 276 LQAKE--------------------TLKELSLAGN-KLGDEGARLLCESLLQPGCQLESL 314
Query: 513 EIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFN-INDNGMI----PLAQYSQNLKQINLS 567
++ C +A M + +L+++ N + D+G+ L+Q L+ + L
Sbjct: 315 WVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLG 374
Query: 568 YCSVTDVGLIALASI--------------NCLQNMTILHVVG 595
C VT+ G +LAS+ NC+ + +L ++G
Sbjct: 375 DCEVTNSGCSSLASLLLANRSLRELDLSNNCVGDPGVLQLLG 416
>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 397 AFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456
F + + C+ +E + EV D+ +++SR K K G +N ++ G+ S
Sbjct: 45 GFTITTEACKTYQETETIPQEVADQVRENVSRVEKEMGAKFGDPANPLLFSVRS-GAAAS 103
Query: 457 MLKELDLYRSSGITDVGVVAVSHGCPSLE-MINIAYNERIT 496
M +D + G+ V V A P LE + +Y IT
Sbjct: 104 MPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFIT 144
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 34/269 (12%)
Query: 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEV----- 418
C + + ++ T T L L K ++ + F +LEEL++ EN V
Sbjct: 18 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA----SFPHLEELELNENIVSAVEP 73
Query: 419 ----NDEGLKSIS-RCSKLSSLKLGI---CSNITDEGL---KHVGSTCSMLKELDLYRSS 467
N L+++ R ++L + LG+ SN+T + K V M ++L +S
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
Query: 468 GITDVGVVAVSH----GCPSLEMINIAYNERITDTSLIS--LSECLRLKVLEIRGCPRIS 521
+ D +V +SH G SLE + + E+ TS+ + LS L VL +R I+
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTL---EKCNLTSIPTEALSHLHGLIVLRLRHL-NIN 189
Query: 522 AIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALAS 581
AI + R L +L+I ++ M P Y NL +++++C++T V +A+
Sbjct: 190 AIRDYSFKRLYR-LKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 582 INCLQNMTI-LHVVGLTPNGLVNALLRCQ 609
+ L+ + + + + +++ LLR Q
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS 467
LE LDI+ N+V+D IS +KL++L+ I +N + +G + L EL L +
Sbjct: 174 LERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL-NGN 226
Query: 468 GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI---- 523
+ D+G +A L++ N +I++ L LS +L L++ G +IS I
Sbjct: 227 QLKDIGTLASLTNLTDLDL----ANNQISN--LAPLSGLTKLTELKL-GANQISNISPLA 279
Query: 524 GLSAIA-MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIA 578
GL+A+ + + + DI N+ +NL + L + +++D+ ++
Sbjct: 280 GLTALTNLELNENQLEDISPISNL------------KNLTYLTLYFNNISDISPVS 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS 467
LE LDI+ N+V+D IS +KL++L+ I +N + +G + L EL L +
Sbjct: 175 LERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL-NGN 227
Query: 468 GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI---- 523
+ D+G +A L++ N +I++ L LS +L L++ G +IS I
Sbjct: 228 QLKDIGTLASLTNLTDLDL----ANNQISN--LAPLSGLTKLTELKL-GANQISNISPLA 280
Query: 524 GLSAIA-MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIA 578
GL+A+ + + + DI N+ +NL + L + +++D+ ++
Sbjct: 281 GLTALTNLELNENQLEDISPISNL------------KNLTYLTLYFNNISDISPVS 324
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS 467
LE LDI+ N+V+D IS +KL++L+ I +N + +G + L EL L +
Sbjct: 175 LERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL-NGN 227
Query: 468 GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI---- 523
+ D+G +A L++ N +I++ L LS +L L++ G +IS I
Sbjct: 228 QLKDIGTLASLTNLTDLDL----ANNQISN--LAPLSGLTKLTELKL-GANQISNISPLA 280
Query: 524 GLSAIA-MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIA 578
GL+A+ + + + DI N+ +NL + L + +++D+ ++
Sbjct: 281 GLTALTNLELNENQLEDISPISNL------------KNLTYLTLYFNNISDISPVS 324
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS 467
LE LDI+ N+V+D IS +KL++L+ I +N + +G + L EL L +
Sbjct: 175 LERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL-NGN 227
Query: 468 GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI---- 523
+ D+G +A L++ N +I++ L LS +L L++ G +IS I
Sbjct: 228 QLKDIGTLASLTNLTDLDL----ANNQISN--LAPLSGLTKLTELKL-GANQISNISPLA 280
Query: 524 GLSAIA-MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIA 578
GL+A+ + + + DI N+ +NL + L + +++D+ ++
Sbjct: 281 GLTALTNLELNENQLEDISPISNL------------KNLTYLTLYFNNISDISPVS 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,760,066
Number of Sequences: 62578
Number of extensions: 610802
Number of successful extensions: 1274
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 71
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)