Query 006331
Match_columns 650
No_of_seqs 390 out of 3819
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 21:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6E-37 1.3E-41 344.2 23.2 520 71-626 69-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.4E-41 342.1 20.9 512 98-641 68-585 (968)
3 KOG4341 F-box protein containi 99.9 1.7E-27 3.7E-32 217.4 13.9 389 11-490 71-460 (483)
4 KOG4341 F-box protein containi 99.9 1.5E-25 3.1E-30 204.9 10.1 331 304-637 139-477 (483)
5 KOG4194 Membrane glycoprotein 99.9 2.2E-26 4.8E-31 218.5 -2.0 367 177-591 79-447 (873)
6 KOG4194 Membrane glycoprotein 99.9 2.1E-25 4.5E-30 212.0 -1.2 362 230-617 82-447 (873)
7 KOG2120 SCF ubiquitin ligase, 99.9 9.7E-23 2.1E-27 177.9 8.9 270 11-313 97-373 (419)
8 KOG0618 Serine/threonine phosp 99.8 2.8E-22 6.1E-27 201.3 -2.3 289 303-617 219-508 (1081)
9 KOG0472 Leucine-rich repeat pr 99.8 3.6E-22 7.8E-27 181.6 -5.2 511 12-621 21-541 (565)
10 KOG0444 Cytoskeletal regulator 99.8 4.8E-22 1E-26 190.9 -7.7 22 294-315 117-138 (1255)
11 KOG0618 Serine/threonine phosp 99.8 3.7E-21 8.1E-26 193.4 -5.5 467 127-646 23-496 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 5.5E-21 1.2E-25 183.7 -4.3 367 201-596 6-375 (1255)
13 cd00116 LRR_RI Leucine-rich re 99.7 3.9E-16 8.5E-21 153.1 24.8 165 407-576 109-295 (319)
14 PLN03210 Resistant to P. syrin 99.7 6.8E-18 1.5E-22 190.1 13.5 351 144-547 552-907 (1153)
15 cd00116 LRR_RI Leucine-rich re 99.7 8.3E-16 1.8E-20 150.8 25.7 268 297-571 17-319 (319)
16 PLN03210 Resistant to P. syrin 99.7 1.3E-16 2.9E-21 179.7 13.5 344 94-470 553-907 (1153)
17 KOG0472 Leucine-rich repeat pr 99.7 7E-19 1.5E-23 160.4 -5.9 456 61-572 81-541 (565)
18 KOG2120 SCF ubiquitin ligase, 99.5 2.1E-14 4.5E-19 126.3 9.7 203 279-485 186-390 (419)
19 KOG3207 Beta-tubulin folding c 99.4 3.1E-14 6.7E-19 132.1 2.8 219 350-574 117-341 (505)
20 KOG4237 Extracellular matrix p 99.4 4.3E-15 9.3E-20 135.8 -3.9 301 126-452 68-368 (498)
21 KOG1909 Ran GTPase-activating 99.4 2.6E-12 5.5E-17 116.3 13.6 96 296-391 23-131 (382)
22 KOG1947 Leucine rich repeat pr 99.4 3.8E-12 8.3E-17 133.0 13.3 247 353-601 187-445 (482)
23 KOG1947 Leucine rich repeat pr 99.4 4.1E-12 9E-17 132.7 13.3 261 314-576 174-445 (482)
24 KOG1909 Ran GTPase-activating 99.4 1.3E-11 2.8E-16 111.8 13.8 184 404-592 90-307 (382)
25 KOG3207 Beta-tubulin folding c 99.3 2.9E-12 6.4E-17 119.2 4.5 231 48-286 98-334 (505)
26 PRK15387 E3 ubiquitin-protein 99.2 1.1E-11 2.3E-16 129.9 7.1 253 279-592 202-454 (788)
27 KOG4237 Extracellular matrix p 99.2 2E-12 4.2E-17 118.7 -0.1 94 425-523 269-362 (498)
28 PRK15387 E3 ubiquitin-protein 99.2 2.3E-11 5E-16 127.4 6.1 225 303-580 242-466 (788)
29 PRK15370 E3 ubiquitin-protein 98.9 1E-08 2.2E-13 108.5 12.5 54 99-161 199-252 (754)
30 PF14580 LRR_9: Leucine-rich r 98.8 1.9E-09 4.1E-14 91.9 2.6 86 505-593 62-150 (175)
31 KOG0617 Ras suppressor protein 98.8 4.6E-11 1E-15 96.6 -6.9 132 175-316 55-186 (264)
32 PF12937 F-box-like: F-box-lik 98.8 2E-09 4.3E-14 70.0 1.1 38 12-51 1-38 (47)
33 KOG2982 Uncharacterized conser 98.8 1.3E-08 2.8E-13 90.5 6.1 83 152-235 47-130 (418)
34 PRK15370 E3 ubiquitin-protein 98.8 3.4E-08 7.3E-13 104.7 10.2 255 125-424 178-433 (754)
35 KOG2982 Uncharacterized conser 98.7 1.2E-08 2.7E-13 90.6 4.6 210 358-574 49-264 (418)
36 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 87.5 3.5 62 481-544 63-124 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.7 1E-08 2.2E-13 110.4 4.2 107 225-337 544-651 (889)
38 KOG0617 Ras suppressor protein 98.7 4.5E-10 9.7E-15 91.0 -5.2 153 175-339 32-184 (264)
39 KOG3665 ZYG-1-like serine/thre 98.6 1.6E-07 3.4E-12 98.7 10.7 204 304-515 61-283 (699)
40 COG5238 RNA1 Ran GTPase-activa 98.6 1E-06 2.2E-11 77.7 13.6 165 404-572 90-285 (388)
41 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.3E-13 106.1 5.2 34 11-46 404-439 (889)
42 KOG3665 ZYG-1-like serine/thre 98.5 1.6E-07 3.5E-12 98.6 8.0 162 150-336 122-283 (699)
43 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5E-13 88.9 0.4 102 481-592 306-408 (490)
44 COG5238 RNA1 Ran GTPase-activa 98.5 2.7E-06 5.8E-11 75.1 12.9 60 533-593 185-252 (388)
45 KOG1259 Nischarin, modulator o 98.4 4.5E-08 9.8E-13 87.1 0.3 131 429-573 283-413 (490)
46 PF00646 F-box: F-box domain; 98.3 1.5E-07 3.3E-12 61.8 0.1 39 11-51 2-40 (48)
47 KOG1859 Leucine-rich repeat pr 98.2 7.8E-08 1.7E-12 96.1 -3.6 108 454-572 185-292 (1096)
48 smart00256 FBOX A Receptor for 98.1 1.4E-06 3E-11 55.0 1.8 35 15-51 1-35 (41)
49 KOG3864 Uncharacterized conser 98.1 3.7E-06 8E-11 71.0 4.1 87 509-597 103-190 (221)
50 KOG3864 Uncharacterized conser 98.1 3.3E-06 7.2E-11 71.3 3.4 89 431-521 102-190 (221)
51 KOG1859 Leucine-rich repeat pr 98.0 5.8E-07 1.3E-11 90.1 -2.4 126 126-263 165-290 (1096)
52 PF13855 LRR_8: Leucine rich r 97.8 5.8E-06 1.2E-10 57.5 0.6 59 406-466 1-59 (61)
53 PF13855 LRR_8: Leucine rich r 97.8 6.9E-06 1.5E-10 57.1 0.5 59 176-236 1-59 (61)
54 COG4886 Leucine-rich repeat (L 97.6 4.6E-05 9.9E-10 77.0 3.6 152 407-574 141-292 (394)
55 PLN03150 hypothetical protein; 97.6 0.00017 3.6E-09 76.6 7.8 107 228-339 420-526 (623)
56 KOG2123 Uncharacterized conser 97.4 3.2E-05 7E-10 68.7 0.0 102 456-565 19-123 (388)
57 COG4886 Leucine-rich repeat (L 97.4 0.00015 3.2E-09 73.3 4.5 148 177-339 141-288 (394)
58 PLN03150 hypothetical protein; 97.3 0.00044 9.5E-09 73.5 7.4 106 432-544 420-526 (623)
59 KOG2123 Uncharacterized conser 97.2 0.00012 2.5E-09 65.3 1.3 82 481-570 18-99 (388)
60 KOG4308 LRR-containing protein 97.2 0.00034 7.4E-09 70.7 4.0 169 406-578 262-451 (478)
61 KOG0532 Leucine-rich repeat (L 97.1 8E-05 1.7E-09 73.2 -1.2 33 203-236 144-176 (722)
62 PRK15386 type III secretion pr 97.1 0.00036 7.8E-09 67.7 2.8 140 425-592 47-186 (426)
63 KOG4308 LRR-containing protein 97.0 0.00016 3.5E-09 73.0 0.3 38 536-574 265-305 (478)
64 KOG2739 Leucine-rich acidic nu 97.0 0.0003 6.6E-09 62.5 1.8 89 505-594 63-154 (260)
65 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.5E-08 41.8 3.5 13 559-571 24-36 (44)
66 KOG0531 Protein phosphatase 1, 96.9 8.4E-05 1.8E-09 75.2 -3.2 166 404-591 93-263 (414)
67 PF12799 LRR_4: Leucine Rich r 96.9 0.0019 4.2E-08 40.8 4.0 38 406-445 1-38 (44)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00018 3.9E-09 63.9 -1.0 108 506-617 42-151 (260)
69 KOG1644 U2-associated snRNP A' 96.8 0.00062 1.3E-08 57.9 1.9 35 482-517 88-123 (233)
70 KOG1644 U2-associated snRNP A' 96.8 0.00066 1.4E-08 57.8 1.6 63 200-263 62-124 (233)
71 KOG0531 Protein phosphatase 1, 96.7 0.00014 3E-09 73.6 -3.3 217 377-617 92-313 (414)
72 KOG0532 Leucine-rich repeat (L 96.6 0.00019 4.2E-09 70.6 -2.7 147 126-289 99-245 (722)
73 PRK15386 type III secretion pr 96.5 0.0054 1.2E-07 59.8 6.4 136 404-569 50-187 (426)
74 KOG4579 Leucine-rich repeat (L 96.3 0.0021 4.6E-08 51.0 2.0 85 483-573 28-114 (177)
75 KOG4579 Leucine-rich repeat (L 95.8 0.004 8.6E-08 49.5 1.3 83 454-543 51-133 (177)
76 smart00367 LRR_CC Leucine-rich 95.7 0.012 2.7E-07 32.1 2.7 22 533-554 2-23 (26)
77 smart00367 LRR_CC Leucine-rich 95.6 0.018 3.9E-07 31.4 3.0 20 456-475 2-21 (26)
78 PLN03215 ascorbic acid mannose 94.9 0.015 3.3E-07 56.0 2.1 40 10-50 2-41 (373)
79 PF13516 LRR_6: Leucine Rich r 94.3 0.021 4.5E-07 30.5 0.9 21 559-579 2-22 (24)
80 KOG0281 Beta-TrCP (transducin 94.2 0.022 4.8E-07 52.4 1.4 40 9-50 72-115 (499)
81 KOG2997 F-box protein FBX9 [Ge 92.3 0.068 1.5E-06 49.1 1.4 38 11-49 106-147 (366)
82 PF13516 LRR_6: Leucine Rich r 91.9 0.11 2.3E-06 27.7 1.4 19 406-424 2-20 (24)
83 PF13504 LRR_7: Leucine rich r 90.2 0.2 4.4E-06 24.0 1.3 14 559-572 1-14 (17)
84 smart00368 LRR_RI Leucine rich 88.7 0.5 1.1E-05 26.3 2.4 22 559-580 2-23 (28)
85 PF00560 LRR_1: Leucine Rich R 88.7 0.19 4E-06 26.1 0.6 20 203-223 1-20 (22)
86 PF13306 LRR_5: Leucine rich r 88.5 0.069 1.5E-06 43.8 -1.8 14 145-158 30-43 (129)
87 PF13306 LRR_5: Leucine rich r 87.8 0.28 6.1E-06 40.1 1.5 12 223-234 32-43 (129)
88 PF13013 F-box-like_2: F-box-l 87.7 0.46 9.9E-06 36.9 2.4 30 11-42 21-50 (109)
89 smart00368 LRR_RI Leucine rich 87.2 0.94 2E-05 25.1 2.9 23 533-556 2-24 (28)
90 KOG3763 mRNA export factor TAP 80.9 2.4 5.2E-05 42.9 4.6 38 301-338 216-254 (585)
91 smart00370 LRR Leucine-rich re 80.5 1.1 2.4E-05 24.2 1.3 21 559-579 2-22 (26)
92 smart00369 LRR_TYP Leucine-ric 80.5 1.1 2.4E-05 24.2 1.3 21 559-579 2-22 (26)
93 KOG3763 mRNA export factor TAP 79.6 3.6 7.8E-05 41.7 5.3 39 378-416 216-254 (585)
94 KOG0274 Cdc4 and related F-box 73.4 1.1 2.4E-05 46.6 0.0 46 7-54 103-148 (537)
95 smart00365 LRR_SD22 Leucine-ri 64.1 4.6 9.9E-05 22.0 1.2 15 559-573 2-16 (26)
96 PF09372 PRANC: PRANC domain; 62.6 3.6 7.9E-05 31.5 0.9 26 9-36 69-94 (97)
97 KOG3926 F-box proteins [Amino 48.1 22 0.00049 32.4 3.5 42 7-49 197-238 (332)
98 PF07723 LRR_2: Leucine Rich R 41.5 22 0.00047 19.3 1.5 22 152-173 2-23 (26)
99 KOG3735 Tropomodulin and leiom 38.2 74 0.0016 30.5 5.4 83 371-454 189-278 (353)
100 smart00364 LRR_BAC Leucine-ric 35.6 23 0.0005 19.3 1.0 15 559-573 2-16 (26)
101 KOG3735 Tropomodulin and leiom 30.7 1.2E+02 0.0026 29.2 5.4 82 446-529 188-276 (353)
102 KOG4242 Predicted myosin-I-bin 28.4 1.5E+02 0.0031 30.2 5.8 15 406-420 440-454 (553)
103 KOG0473 Leucine-rich repeat pr 21.7 6.1 0.00013 35.3 -4.2 89 143-238 35-123 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-37 Score=344.20 Aligned_cols=520 Identities=18% Similarity=0.144 Sum_probs=332.1
Q ss_pred CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (650)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (650)
.+++.|+++++. +..... +.+..++.|+.|++++|....... ..+...+++|++|++++|...+..+. ..++
T Consensus 69 ~~v~~L~L~~~~-i~~~~~---~~~~~l~~L~~L~Ls~n~~~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN-ISGKIS---SAIFRLPYIQTINLSNNQLSGPIP-DDIFTTSSSLRYLNLSNNNFTGSIPR---GSIP 140 (968)
T ss_pred CcEEEEEecCCC-ccccCC---hHHhCCCCCCEEECCCCccCCcCC-hHHhccCCCCCEEECcCCccccccCc---cccC
Confidence 467777777654 221111 134567778888888776432222 22333677888888887764433332 4567
Q ss_pred CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccE
Q 006331 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (650)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 230 (650)
+|++|++++|...+. ....+. .+++|++|++++|......+... .++++|++|++++|.+.+..+..++++++|++
T Consensus 141 ~L~~L~Ls~n~~~~~-~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNMLSGE-IPNDIG-SFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCccccc-CChHHh-cCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 888888887763221 122233 37788888888774433433332 36778888888888777777777778888888
Q ss_pred EecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEe
Q 006331 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (650)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 310 (650)
|++++|.... ..+..+.. +++|++|++++|.. . ..++..+..+++|++|++++| .+.+..|..+..+++|++|++
T Consensus 217 L~L~~n~l~~-~~p~~l~~-l~~L~~L~L~~n~l-~-~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 217 IYLGYNNLSG-EIPYEIGG-LTSLNHLDLVYNNL-T-GPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred EECcCCccCC-cCChhHhc-CCCCCEEECcCcee-c-cccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEEC
Confidence 8888765433 22344554 77888888877652 1 223556677788888888777 455566777777788888888
Q ss_pred cCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCC
Q 006331 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (650)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (650)
++|.+.+..+..+. .+++|+.|++++|.... ..+..+..+++|+.|++++|.... ..+.....+++|+.|++++|
T Consensus 292 s~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 292 SDNSLSGEIPELVI-QLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCeeccCCChhHc-CCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcC--cCChHHhCCCCCcEEECCCC
Confidence 88877766665555 67788888887764322 233445677888888887776322 22333456678888888776
Q ss_pred ccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCC
Q 006331 391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGIT 470 (650)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 470 (650)
.. ....+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++| .++......+ ..+++|+.|++++|. ++
T Consensus 367 ~l-~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~ 441 (968)
T PLN00113 367 NL-TGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEF-TKLPLVYFLDISNNN-LQ 441 (968)
T ss_pred ee-EeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhH-hcCCCCCEEECcCCc-cc
Confidence 43 222223333 5677888888888777777777777888888888887 6654433333 367888888887764 32
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhh
Q 006331 471 DVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNG 550 (650)
Q Consensus 471 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 550 (650)
. .+......+++|+.|++++|. +....+..+ ..++|+.|++++| .++.. .+..+..+++|+.|++++| .+....
T Consensus 442 ~-~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~~-~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~ 515 (968)
T PLN00113 442 G-RINSRKWDMPSLQMLSLARNK-FFGGLPDSF-GSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQLKLSEN-KLSGEI 515 (968)
T ss_pred C-ccChhhccCCCCcEEECcCce-eeeecCccc-ccccceEEECcCC-ccCCc-cChhhhhhhccCEEECcCC-cceeeC
Confidence 1 122233357888888888874 433222222 3577888888888 55543 3445566788888888888 443222
Q ss_pred HHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCCh
Q 006331 551 MIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQ 626 (650)
Q Consensus 551 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~ 626 (650)
...+ ..+++|+.|++++|.+++..+..+..+++|+.|++.++.- ...++..+..+++|+.++++ |.+.+.+|.
T Consensus 516 p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 516 PDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL--SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ChHH-cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc--cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 2222 4467888888888888877777788888888888875432 12334455678888888888 777777774
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=342.09 Aligned_cols=512 Identities=19% Similarity=0.150 Sum_probs=392.2
Q ss_pred cccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCC
Q 006331 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (650)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (650)
..+++.|+++++..... ....+. .+++|+.|++++|.....++...+..+++|++|++++|...+.... ..+++
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~-~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~~ 141 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIPN 141 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHh-CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----cccCC
Confidence 35789999998763332 223444 8999999999999855566666667999999999999875432221 23789
Q ss_pred CceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccccee
Q 006331 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (650)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 257 (650)
|++|++++|......+... ..+++|++|++++|.+.+..+..++++++|++|++++|..... .+..+.. +++|++|
T Consensus 142 L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~-l~~L~~L 217 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQ-MKSLKWI 217 (968)
T ss_pred CCEEECcCCcccccCChHH--hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcC-cCCccEE
Confidence 9999999985544444433 4799999999999999888899999999999999999865443 2455665 8999999
Q ss_pred ecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCC
Q 006331 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (650)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (650)
++++|.. . ..++..+..+++|++|++++| .+.+..|..+..+++|++|++++|.+.+..+..+. .+++|++|++++
T Consensus 218 ~L~~n~l-~-~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~ 293 (968)
T PLN00113 218 YLGYNNL-S-GEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293 (968)
T ss_pred ECcCCcc-C-CcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcC
Confidence 9998862 2 234566788999999999998 56667888999999999999999998877777776 789999999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCc
Q 006331 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE 417 (650)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (650)
|.... .++..+..+++|+.|++++|.... ..+.....+++|+.|++++|.. ....+..+. .+++|+.|++++|.
T Consensus 294 n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 294 NSLSG--EIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKF-SGEIPKNLG-KHNNLTVLDLSTNN 367 (968)
T ss_pred Ceecc--CCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCC-cCcCChHHh-CCCCCcEEECCCCe
Confidence 85322 244557789999999999987432 2333455789999999999764 333334444 78999999999999
Q ss_pred cChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCCh
Q 006331 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITD 497 (650)
Q Consensus 418 ~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 497 (650)
+.+..+..+..+++|+.|++++| .+.......+. .+++|+.|++++|.. +.. ++.....+++|+.|++++| .++.
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~-~~~~L~~L~L~~n~l-~~~-~p~~~~~l~~L~~L~Ls~N-~l~~ 442 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLG-ACRSLRRVRLQDNSF-SGE-LPSEFTKLPLVYFLDISNN-NLQG 442 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCC-EecccCCHHHh-CCCCCCEEECcCCEe-eeE-CChhHhcCCCCCEEECcCC-cccC
Confidence 98877888888999999999999 77655554444 789999999998753 321 2334457899999999999 5776
Q ss_pred HHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHH
Q 006331 498 TSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLI 577 (650)
Q Consensus 498 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 577 (650)
.....+..+++|+.|++++| .+... ++..+ ..++|+.|++++| .++......+ ..+++|+.|++++|.++...+.
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n-~~~~~-~p~~~-~~~~L~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARN-KFFGG-LPDSF-GSKRLENLDLSRN-QFSGAVPRKL-GSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred ccChhhccCCCCcEEECcCc-eeeee-cCccc-ccccceEEECcCC-ccCCccChhh-hhhhccCEEECcCCcceeeCCh
Confidence 66666778999999999999 44332 22222 4589999999999 5643322222 4568999999999999988888
Q ss_pred HHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCChhH-----HHHhhhcccEEEe
Q 006331 578 ALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQSF-----LHYMEAQNFLFLW 641 (650)
Q Consensus 578 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~~~-----~~~~~~~~~~~~~ 641 (650)
.+..+++|+.|++.++.-. ..++..+..+++|+.|+++ |.+.+.+|..+ ++.+++.+|.+.-
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLS--GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred HHcCccCCCEEECCCCccc--ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 8999999999999865321 2234456799999999999 88888888753 6677788887653
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=217.39 Aligned_cols=389 Identities=22% Similarity=0.383 Sum_probs=223.1
Q ss_pred CCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhcccccccchhhHHHHHhcCCCceEeccCCCCCCCchhhh
Q 006331 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALS 90 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 90 (650)
+.-.||+|++..||+ +|+ .+.+.+++.+|+.|...+... ..|..++... |+ + +.. .....
T Consensus 71 ~~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~-~~~q~idL~t-------~~--r--Dv~------g~VV~ 130 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDG-SCWQHIDLFT-------FQ--R--DVD------GGVVE 130 (483)
T ss_pred ccccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhcc-ccceeeehhc-------ch--h--cCC------Cccee
Confidence 445699999999999 998 999999999999999764432 2222222100 00 0 111 11111
Q ss_pred hhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHH-hccCcceeeccCCcCCChHhHH
Q 006331 91 IVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA-EAKNLERLWLARCKLITDLGIG 169 (650)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 169 (650)
.+ .......||.|.++++.......+..+...||++++|.+.+|..+++.....++ .+++|++|++..|..+++..+.
T Consensus 131 ~~-~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 131 NM-ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred hH-hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 12 223335678888888887777777888778888888888887766665443333 2455555555555555555555
Q ss_pred HHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHh
Q 006331 170 RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249 (650)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 249 (650)
.++..|++|+++++++|..+...++..+... +..++.+.+.+|.......+.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG------------------------~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRG------------------------CKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhcc------------------------chhhhhhhhcccccccHHHHHHHhc
Confidence 5555555555555555544433332222222 2333444444444444444554555
Q ss_pred cCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCC
Q 006331 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (650)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 329 (650)
+++.+.++++..|..+++.++..+-..+..|+.++.+++.. +++..+..++.++++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhcCCCc
Confidence 55556666655665555555444444455555555444422 344455555556666
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCc
Q 006331 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (650)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (650)
|+.+.++.|..+++..+...-.+++.|+.+++..|....+..+.....+|+.|+.+.++.|..+++.+...+...
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~----- 396 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS----- 396 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc-----
Confidence 666666666656655555555556666666666655555555555555556666666665555555433332210
Q ss_pred EEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeC
Q 006331 410 ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINI 489 (650)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 489 (650)
-.....|+.+.+++|+.+++..++.+. .|++|+.+++.+|..++..++..+..++|+++...+
T Consensus 397 ----------------~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 ----------------SCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ----------------cccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 012345666667777666666665554 667777777777777777777777767776666544
Q ss_pred C
Q 006331 490 A 490 (650)
Q Consensus 490 ~ 490 (650)
-
T Consensus 460 ~ 460 (483)
T KOG4341|consen 460 F 460 (483)
T ss_pred c
Confidence 3
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=204.91 Aligned_cols=331 Identities=23% Similarity=0.441 Sum_probs=278.8
Q ss_pred CCcEEEecCCc-CCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCC
Q 006331 304 MLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (650)
Q Consensus 304 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (650)
.|+.|.+.|+. +.+.....+...+|++++|.+.+|..+++.....+...|++|+.+.+..|..+++..+......|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777787774 55667777888899999999999999999988888899999999999999989998888888899999
Q ss_pred CEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCC-ccChhhHHhhh-cCCCCCeeecCCCCCCChhhHHHHHhcCccCcE
Q 006331 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (650)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~ 460 (650)
++|++++|+.+...++..+...+..++.+...+| ....+...... .++-+.++++..|..++++++..+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999999988888888888888888877775 33333333333 467788888889988999999999889999999
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhc-CCCCcEEEecCCCCCChHHHHHHHhcCCCccEEe
Q 006331 461 LDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSE-CLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLD 539 (650)
Q Consensus 461 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (650)
|+.++|..+++..+.++.+++++|+.+.++.|.++++.+...++. ++.|+.+++.+|..+++..+.....+|+.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 999999999999999999999999999999999999999888874 8999999999998888877788888999999999
Q ss_pred cCCCCCCChhhHHHHHH---hCCcCCeEEeecCC-CCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceee
Q 006331 540 IKKCFNINDNGMIPLAQ---YSQNLKQINLSYCS-VTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVK 615 (650)
Q Consensus 540 l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 615 (650)
++.|..++|.+...+.. ....|+.+.+++|+ +++...+++..+++|+.+.+.+|.++.-.++...-..+|+++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~- 457 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH- 457 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh-
Confidence 99999899988777653 46789999999996 67778888999999999999999999888888877788877654
Q ss_pred eccccccCCChhHHHHhhhccc
Q 006331 616 LNASFRPLLPQSFLHYMEAQNF 637 (650)
Q Consensus 616 l~~~~~~~~p~~~~~~~~~~~~ 637 (650)
..+....|+++.+.+..+.|
T Consensus 458 --a~~a~~t~p~~v~~~~~~v~ 477 (483)
T KOG4341|consen 458 --AYFAPVTPPGFVKGLHQRVC 477 (483)
T ss_pred --hhccCCCCccccccchhhcc
Confidence 45556677777777766655
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.2e-26 Score=218.53 Aligned_cols=367 Identities=16% Similarity=0.128 Sum_probs=202.6
Q ss_pred CCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccce
Q 006331 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (650)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 256 (650)
.-+.|++++| .+....+..+ .++++|+.+++..|.++ .+|...+...+|+.|++.+| .+....-+.+.. ++.|+.
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f-~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~-l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFF-YNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSA-LPALRS 153 (873)
T ss_pred ceeeeecccc-ccccCcHHHH-hcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHh-Hhhhhh
Confidence 3445555555 3333333332 25555555555555554 22332223344555555553 223333333333 455555
Q ss_pred eecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecC
Q 006331 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (650)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (650)
|+++.|. ++..--..+..-.++++|++.+|.++......+. .+.+|..|.++
T Consensus 154 lDLSrN~---------------------------is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLs 205 (873)
T KOG4194|consen 154 LDLSRNL---------------------------ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLS 205 (873)
T ss_pred hhhhhch---------------------------hhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecc
Confidence 5555443 2111111222223455555555555544443333 34455555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCC
Q 006331 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (650)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (650)
.+. ++.. ....|..+++|+.|++..+.. ..... ..+..+++|+.|.+..|. +..-.-..+. .+.++++|++..|
T Consensus 206 rNr-ittL-p~r~Fk~L~~L~~LdLnrN~i-rive~-ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy-~l~kme~l~L~~N 279 (873)
T KOG4194|consen 206 RNR-ITTL-PQRSFKRLPKLESLDLNRNRI-RIVEG-LTFQGLPSLQNLKLQRND-ISKLDDGAFY-GLEKMEHLNLETN 279 (873)
T ss_pred cCc-cccc-CHHHhhhcchhhhhhccccce-eeehh-hhhcCchhhhhhhhhhcC-cccccCccee-eecccceeecccc
Confidence 543 2211 123344455555555555442 11101 112345566666665533 2111111111 5677777777777
Q ss_pred ccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCC
Q 006331 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERIT 496 (650)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 496 (650)
++......++..+.+|+.|+++.| .|......... .+++|++|+++.|. ++...-.. +..+..|++|+|++| .++
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws-ftqkL~~LdLs~N~-i~~l~~~s-f~~L~~Le~LnLs~N-si~ 354 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS-FTQKLKELDLSSNR-ITRLDEGS-FRVLSQLEELNLSHN-SID 354 (873)
T ss_pred hhhhhhcccccccchhhhhccchh-hhheeecchhh-hcccceeEeccccc-cccCChhH-HHHHHHhhhhccccc-chH
Confidence 777666667777778888888777 66655444443 66788888887653 33211111 124568888888888 577
Q ss_pred hHHHHHhhcCCCCcEEEecCCCCCChH--HHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 497 DTSLISLSECLRLKVLEIRGCPRISAI--GLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 497 ~~~~~~l~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
......|..+.+|++|+++.| .++-. .....+.++++|+.|.+.+| ++....-..+ ..++.|++|++.+|.|..+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCcceee
Confidence 777777777888888888887 43211 12345567888888888888 7766555555 3458888999988888888
Q ss_pred HHHHHhcCCCCCceeee
Q 006331 575 GLIALASINCLQNMTIL 591 (650)
Q Consensus 575 ~~~~~~~l~~L~~L~l~ 591 (650)
.+.+|..+ .|++|.+.
T Consensus 432 q~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMN 447 (873)
T ss_pred cccccccc-hhhhhhhc
Confidence 88888887 77777654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-25 Score=212.03 Aligned_cols=362 Identities=17% Similarity=0.190 Sum_probs=241.4
Q ss_pred EEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEE
Q 006331 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (650)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 309 (650)
.|++++| .+.+..+..+.. +++|+++++..|. + ..++.+.+...+|+.|++.++ .+...-.+.++.++.|+.|+
T Consensus 82 ~LdlsnN-kl~~id~~~f~n-l~nLq~v~l~~N~-L--t~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNN-KLSHIDFEFFYN-LPNLQEVNLNKNE-L--TRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeecccc-ccccCcHHHHhc-CCcceeeeeccch-h--hhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhh
Confidence 3444442 233333444444 5555555555443 1 122333334445666666655 34445556777889999999
Q ss_pred ecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCC
Q 006331 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (650)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (650)
++.|.++......+. .-.++++|+++++. ++.... ..|..+.+|..|.++.+. ++... ...++.+++|+.|++..
T Consensus 156 LSrN~is~i~~~sfp-~~~ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFP-AKVNIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhchhhcccCCCCC-CCCCceEEeecccc-cccccc-ccccccchheeeecccCc-ccccC-HHHhhhcchhhhhhccc
Confidence 999988765554444 44689999999875 443321 224566788899998887 44333 34456789999999988
Q ss_pred CccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCC
Q 006331 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGI 469 (650)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 469 (650)
|. +....+..+ +.+++|+.|.+..|.+......+|-.+.++++|++..| ++....-..+. ++..|+.|+++.|. +
T Consensus 231 N~-irive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~Na-I 305 (873)
T KOG4194|consen 231 NR-IRIVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYNA-I 305 (873)
T ss_pred cc-eeeehhhhh-cCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchhh-h
Confidence 54 332222222 37889999999998887766667778899999999988 77655444444 77889999998753 3
Q ss_pred CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCC--
Q 006331 470 TDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIN-- 547 (650)
Q Consensus 470 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-- 547 (650)
....+..+ +.+++|++|+|++| +++......+..+..|++|.+++| .+... ....+..+.+|++|+++.| .+.
T Consensus 306 ~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~N-~ls~~ 380 (873)
T KOG4194|consen 306 QRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRSN-ELSWC 380 (873)
T ss_pred heeecchh-hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcCC-eEEEE
Confidence 32222222 35789999999998 688888888888999999999998 66553 2445667789999999988 443
Q ss_pred -hhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHH-HHHhCcccceeeec
Q 006331 548 -DNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVN-ALLRCQGLIKVKLN 617 (650)
Q Consensus 548 -~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~l~l~ 617 (650)
..+...+ ..+++|+.|++.+|++..+.-.+|.+++.|+.|++.+. ....+.. .|..+ .|++|.+.
T Consensus 381 IEDaa~~f-~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N---aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 381 IEDAAVAF-NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN---AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred Eecchhhh-ccchhhhheeecCceeeecchhhhccCcccceecCCCC---cceeecccccccc-hhhhhhhc
Confidence 1233334 34799999999999999888889999999988888743 2222222 23344 66666544
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.7e-23 Score=177.93 Aligned_cols=270 Identities=23% Similarity=0.335 Sum_probs=164.8
Q ss_pred CCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhccccccc-------chhhHHHHHhcCCCceEeccCCCCC
Q 006331 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPL-------CAETLSRTSARYPFITQLDLSLCPR 83 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~ 83 (650)
.|+.|||||+..||+ .|+ -+++.+++.|||||+++....+ .|... ....+.+..++ .+..+.+....
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~-lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~- 170 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDES-LWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSF- 170 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhcccccc-ceeeeccCCCccChhHHHHHHhC--CeEEEEcchhh-
Confidence 478999999999999 999 9999999999999999866542 22222 22333333332 23333332111
Q ss_pred CCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCC
Q 006331 84 ANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI 163 (650)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 163 (650)
..+..+... ...+...|++++++... ++...+..+...|..|+.|.+.+.. +++.....++.-.+|+.|+++.+..+
T Consensus 171 ~~~prlae~-~~~frsRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 171 MDQPRLAEH-FSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hcCchhhhh-hhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeecccccccc
Confidence 111111111 23344567888888765 5555566666688888888888777 45544567777778888888887777
Q ss_pred ChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhH
Q 006331 164 TDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDG 243 (650)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 243 (650)
+..+..-+..+|..|..|++++|...++.....+..--++|+.|+++++.- ......
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr-----------------------nl~~sh 304 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR-----------------------NLQKSH 304 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh-----------------------hhhhhH
Confidence 777777777777777888887775555543333333445555555555411 111223
Q ss_pred HHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCC
Q 006331 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313 (650)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 313 (650)
+..+...||+|.+|+++++..+.. +....+.+++.|++|.++.|..+.....-.+...|.|.+|++.|+
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 444555566777777766655444 334445556666666666665444444444555666666666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-22 Score=201.32 Aligned_cols=289 Identities=17% Similarity=0.177 Sum_probs=171.8
Q ss_pred CCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCC
Q 006331 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (650)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (650)
++|+.|+.+.|.++...... ...+|++++++.+.. . .++.++..+++|+.+....+.. . .+..-.....+|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l-~--~lp~wi~~~~nle~l~~n~N~l-~--~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNL-S--NLPEWIGACANLEALNANHNRL-V--ALPLRISRITSL 289 (1081)
T ss_pred cchheeeeccCcceeecccc---ccccceeeecchhhh-h--cchHHHHhcccceEecccchhH-H--hhHHHHhhhhhH
Confidence 46666666666655221111 224677777776542 2 2446667777777777776653 2 222222234566
Q ss_pred CEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCC-CCCeeecCCCCCCChhhHHHHHhcCccCcEE
Q 006331 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGICSNITDEGLKHVGSTCSMLKEL 461 (650)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L 461 (650)
+.|.+..|.. +......+..+.|+.|++..|.+.......+.... .|+.|..+.+ .+.... ..-....+.|+.|
T Consensus 290 ~~l~~~~nel---~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp-~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 290 VSLSAAYNEL---EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLP-SYEENNHAALQEL 364 (1081)
T ss_pred HHHHhhhhhh---hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc-cccccc-cccchhhHHHHHH
Confidence 6666655432 22222333567788888888777655443333322 2555555544 322111 0011234567777
Q ss_pred eccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecC
Q 006331 462 DLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIK 541 (650)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 541 (650)
.+.+ +.++|..++.+. ++++|+.|++++| ++.......+.+++.|++|+++|| +++. ++..+..++.|++|...
T Consensus 365 ylan-N~Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 365 YLAN-NHLTDSCFPVLV-NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHhc-Ccccccchhhhc-cccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhc
Confidence 7775 457776666554 6788888888888 577777777888888888888888 7766 34556677888888887
Q ss_pred CCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec
Q 006331 542 KCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN 617 (650)
Q Consensus 542 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~ 617 (650)
+| .+.... -...++.|+.+|+|.|.++.....+...-++|++|++.+.+.. .--...+..|..+...++.
T Consensus 439 sN-~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l--~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 439 SN-QLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL--VFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred CC-ceeech---hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc--ccchhhhHHhhhhhheecc
Confidence 77 443222 2234578888888888888776665555578888888754321 1112234456666655555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=3.6e-22 Score=181.61 Aligned_cols=511 Identities=16% Similarity=0.126 Sum_probs=278.8
Q ss_pred CCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhcccccccchhhHHHHHhcCCCceEeccCCCCCCCchhhhh
Q 006331 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSI 91 (650)
Q Consensus 12 ~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 91 (650)
..+-|.|+++.... .-. --+||..+......+..-+.+.+...+.++..+..++++.+...+-
T Consensus 21 l~~vp~~vyq~~~t-~~e-----------~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~l----- 83 (565)
T KOG0472|consen 21 LKDVPTEVYQINLT-TGE-----------GENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQL----- 83 (565)
T ss_pred hhhccHHHHHHHhh-ccc-----------hhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhC-----
Confidence 34566666655444 111 2345554443333333334456677788888899999887774332
Q ss_pred hhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHH
Q 006331 92 VSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRI 171 (650)
Q Consensus 92 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 171 (650)
.++...+..+++++.++++.. .++.-....++|+.++++.+... +.+ +.++.+-.|+.++..++...+ . .+.+
T Consensus 84 p~aig~l~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~s-l-p~~~ 156 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLS---ELPEQIGSLISLVKLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQISS-L-PEDM 156 (565)
T ss_pred CHHHHHHHHHHHhhcccchHh---hccHHHhhhhhhhhhhcccccee-ecC-chHHHHhhhhhhhcccccccc-C-chHH
Confidence 225667788888888877642 22222237778999999988743 333 467888888888888776322 1 2333
Q ss_pred HhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcC
Q 006331 172 AACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC 251 (650)
Q Consensus 172 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (650)
.. +.++..+++.++ .+...+...+ ..+.|++|+...|-++ ..|+.++.+.+|+.|++..|.... ++.|.. |
T Consensus 157 ~~-~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~---lPef~g-c 227 (565)
T KOG0472|consen 157 VN-LSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF---LPEFPG-C 227 (565)
T ss_pred HH-HHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc---CCCCCc-c
Confidence 33 778888888887 4555555543 3788888988888765 688888888888888888864322 335555 7
Q ss_pred cccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCc
Q 006331 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (650)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 331 (650)
..|+++.++.+. +... -......++++..|+++++ .++ +.|..+..+.+|++|++++|.++.. +..++ ++ .|+
T Consensus 228 s~L~Elh~g~N~-i~~l-pae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLg-nl-hL~ 300 (565)
T KOG0472|consen 228 SLLKELHVGENQ-IEML-PAEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLG-NL-HLK 300 (565)
T ss_pred HHHHHHHhcccH-HHhh-HHHHhcccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCccccC-Ccccc-cc-eee
Confidence 888888887764 2211 1233446777777777777 343 6677777777777777777776632 22333 33 566
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCC--ccCC-----HHHHHHHhhc
Q 006331 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC--KLVS-----WEAFVLIGQQ 404 (650)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~-----~~~~~~~~~~ 404 (650)
.|.+.+++-- .+..-+-.++ +...+...-. ..+.=.++.. ...+ ...+...- .
T Consensus 301 ~L~leGNPlr---TiRr~ii~~g-------------T~~vLKyLrs---~~~~dglS~se~~~e~~~t~~~~~~~~~~-~ 360 (565)
T KOG0472|consen 301 FLALEGNPLR---TIRREIISKG-------------TQEVLKYLRS---KIKDDGLSQSEGGTETAMTLPSESFPDIY-A 360 (565)
T ss_pred ehhhcCCchH---HHHHHHHccc-------------HHHHHHHHHH---hhccCCCCCCcccccccCCCCCCcccchh-h
Confidence 6666665421 1111111100 0111111100 0000000000 0000 00000000 2
Q ss_pred CCCCcEEEecCCccChhhHHhhh--cCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 405 CQYLEELDITENEVNDEGLKSIS--RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
..+.+.|++++-.++....+.|. +-.-...+++++| ++. .+.+.++.++.
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~-----elPk~L~~lke---------------------- 412 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN-QLC-----ELPKRLVELKE---------------------- 412 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccc-hHh-----hhhhhhHHHHH----------------------
Confidence 23445555554433333222221 1112333444443 221 11111111110
Q ss_pred CCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCC
Q 006331 483 SLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLK 562 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 562 (650)
....+.++++ .-+.....+..+++|..|++++| -+.+ ++.-+..+..|+.|+++.| .+... .........++
T Consensus 413 lvT~l~lsnn--~isfv~~~l~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lE 484 (565)
T KOG0472|consen 413 LVTDLVLSNN--KISFVPLELSQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLE 484 (565)
T ss_pred HHHHHHhhcC--ccccchHHHHhhhcceeeecccc-hhhh--cchhhhhhhhhheeccccc-ccccc--hHHHhhHHHHH
Confidence 1112233333 33344455556667777777666 4444 3344445566777777777 33221 11112233566
Q ss_pred eEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccc
Q 006331 563 QINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFR 621 (650)
Q Consensus 563 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~ 621 (650)
.+-.++|++....+..+.++.+|.+|++ .++....++..+++|.+|++|++. |+|+
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL---~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDL---QNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceecc---CCCchhhCChhhccccceeEEEecCCccC
Confidence 6666778888776665555555555554 477788888889999999999999 7776
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=4.8e-22 Score=190.93 Aligned_cols=22 Identities=5% Similarity=-0.005 Sum_probs=9.6
Q ss_pred hHHHHhhcCCCCcEEEecCCcC
Q 006331 294 DLSKCLHNFPMLQSIKFEDCPV 315 (650)
Q Consensus 294 ~~~~~l~~l~~L~~L~l~~~~~ 315 (650)
+.|..+...+++-.|+++.|++
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCcc
Confidence 3344444444444444444443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=3.7e-21 Score=193.35 Aligned_cols=467 Identities=15% Similarity=0.137 Sum_probs=236.0
Q ss_pred CceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCce
Q 006331 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206 (650)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 206 (650)
+..|+++.|..+... .+.+...-+|+.|+++++.. .+-+ ..+.. .++|+.|.++.| .+...+... .+..+|+.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~-~~fp-~~it~-l~~L~~ln~s~n-~i~~vp~s~--~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQI-SSFP-IQITL-LSHLRQLNLSRN-YIRSVPSSC--SNMRNLQY 95 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeecccccc-ccCC-chhhh-HHHHhhcccchh-hHhhCchhh--hhhhcchh
Confidence 444455544422221 23333344455555555532 1110 11111 345555555554 333333221 24455555
Q ss_pred eecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcc
Q 006331 207 LDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILA 286 (650)
Q Consensus 207 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 286 (650)
+.|.++... ..|..+..+.+|+.|+++.|..... +..+.. +..+..+..++|..+.. ++.. .++.+++.
T Consensus 96 lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~-lt~~~~~~~s~N~~~~~------lg~~-~ik~~~l~ 164 (1081)
T KOG0618|consen 96 LNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPI--PLVIEV-LTAEEELAASNNEKIQR------LGQT-SIKKLDLR 164 (1081)
T ss_pred heeccchhh-cCchhHHhhhcccccccchhccCCC--chhHHh-hhHHHHHhhhcchhhhh------hccc-cchhhhhh
Confidence 555555433 3444555555555555555433221 111111 34444444444321111 1111 14444444
Q ss_pred cCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCC
Q 006331 287 YSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366 (650)
Q Consensus 287 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (650)
.+ .+...++..+..+.. .|++.+|.+... .+. .+++|+.+....+.... +....++++.|....|..
T Consensus 165 ~n-~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls-~~~~l~~l~c~rn~ls~------l~~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 165 LN-VLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLS-NLANLEVLHCERNQLSE------LEISGPSLTALYADHNPL 231 (1081)
T ss_pred hh-hcccchhcchhhhhe--eeecccchhhhh---hhh-hccchhhhhhhhcccce------EEecCcchheeeeccCcc
Confidence 44 233334444443333 466666655411 111 34555555544432111 111235666666666652
Q ss_pred ccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChh
Q 006331 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (650)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~ 446 (650)
.+ .... ....+|++++++.+..... + .+...|++|+.++...|.+ ...+..+....+|+.|.+..| .+..
T Consensus 232 ~~--~~~~--p~p~nl~~~dis~n~l~~l--p-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~y- 301 (1081)
T KOG0618|consen 232 TT--LDVH--PVPLNLQYLDISHNNLSNL--P-EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEY- 301 (1081)
T ss_pred ee--eccc--cccccceeeecchhhhhcc--h-HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhh-
Confidence 21 1110 1124666666666443221 1 2222567777777766666 233444455566666666655 3321
Q ss_pred hHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHH
Q 006331 447 GLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLS 526 (650)
Q Consensus 447 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 526 (650)
+........+|++|++..+. +.......+..-...|+.|+.+.+ .+.......=..++.|+.|++.+| .+++..++
T Consensus 302 -ip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p 377 (1081)
T KOG0618|consen 302 -IPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANN-HLTDSCFP 377 (1081)
T ss_pred -CCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcC-cccccchh
Confidence 11112245667777776643 221111111111123455555544 232222111113667888999998 88887655
Q ss_pred HHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHH
Q 006331 527 AIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALL 606 (650)
Q Consensus 527 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 606 (650)
. +.++.+|+.|++++| .+.......+ ..++.|++|++|||+++... ..++.+++|++|... ++....++ .+.
T Consensus 378 ~-l~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ah---sN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 378 V-LVNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAH---SNQLLSFP-ELA 449 (1081)
T ss_pred h-hccccceeeeeeccc-ccccCCHHHH-hchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhc---CCceeech-hhh
Confidence 4 468899999999999 6664444443 44688999999999998764 677888999888776 44444555 455
Q ss_pred hCcccceeeec-ccccc-----CCChhHHHHhhhcccE-EEecccCC
Q 006331 607 RCQGLIKVKLN-ASFRP-----LLPQSFLHYMEAQNFL-FLWRDKAF 646 (650)
Q Consensus 607 ~~~~L~~l~l~-~~~~~-----~~p~~~~~~~~~~~~~-~~~~~~~~ 646 (650)
..++|+.+||+ |++.. ..|.+.++.+++.+|. ...+.+-|
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhh
Confidence 89999999999 44443 3454678889999885 44444433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=5.5e-21 Score=183.73 Aligned_cols=367 Identities=14% Similarity=0.135 Sum_probs=244.9
Q ss_pred CCCCceeecCCCCCC-cccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 201 CQEIRTLDLSYLPIT-EKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
++=.+-.++++|.++ +..|.....++.++.|.+... ... ..++.++. +.+|++|.+..+.. ..+..-+..+|.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~-~vPeEL~~-lqkLEHLs~~HN~L---~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLE-QVPEELSR-LQKLEHLSMAHNQL---ISVHGELSDLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhh-hChHHHHH-Hhhhhhhhhhhhhh---Hhhhhhhccchh
Confidence 455677889999887 566777888999999999873 222 23566777 99999999998752 223445667899
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (650)
|+.+.++.+.--...+|..+-.+..|..|+++.|++. +.+..+. ...++-.|.++++...+. ....+.++..|-.|
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetI--Pn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETI--PNSLFINLTDLLFL 155 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccC--CchHHHhhHhHhhh
Confidence 9999999884444567888889999999999999876 4455555 667888999998753222 12345567777888
Q ss_pred EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCc-cChhhHHhhhcCCCCCeeecC
Q 006331 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLG 438 (650)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~ 438 (650)
+++++. +. .++.....+..|+.|.+++|+. ....+..+. .+.+|+.|.+++++ -.+..+..+..+.+|+.++++
T Consensus 156 DLS~Nr-Le--~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 156 DLSNNR-LE--MLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred ccccch-hh--hcCHHHHHHhhhhhhhcCCChh-hHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 888876 22 3344445677888888888763 223334333 56677777888743 334456667777888888888
Q ss_pred CCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC
Q 006331 439 ICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP 518 (650)
Q Consensus 439 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (650)
.| +++. .++.+. .+++|+.|++++|. ++..... .....+|+.|+++.| +++. .+.++.++++|+.|.+.+|
T Consensus 231 ~N-~Lp~-vPecly-~l~~LrrLNLS~N~-iteL~~~--~~~W~~lEtLNlSrN-QLt~-LP~avcKL~kL~kLy~n~N- 301 (1255)
T KOG0444|consen 231 EN-NLPI-VPECLY-KLRNLRRLNLSGNK-ITELNMT--EGEWENLETLNLSRN-QLTV-LPDAVCKLTKLTKLYANNN- 301 (1255)
T ss_pred cc-CCCc-chHHHh-hhhhhheeccCcCc-eeeeecc--HHHHhhhhhhccccc-hhcc-chHHHhhhHHHHHHHhccC-
Confidence 77 6652 222222 56788888888754 4422111 112367888888887 4543 3466677788888888777
Q ss_pred CCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHH-HhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCC
Q 006331 519 RISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLA-QYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGL 596 (650)
Q Consensus 519 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~ 596 (650)
+++-.+++..++.+.+|+.+...+| .++ +.+-+ ..|++|+.|.++.|++.. .++++--++.|..|++...+++
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN-~LE---lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANN-KLE---LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhcc-ccc---cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 7777777777777777777777777 432 11111 335677777777776443 3455556666666666655543
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.9e-16 Score=153.09 Aligned_cols=165 Identities=25% Similarity=0.369 Sum_probs=79.8
Q ss_pred CCcEEEecCCccChhhHH----hhhcC-CCCCeeecCCCCCCChhhHHHH---HhcCccCcEEeccCCCCCCHHHHHHHH
Q 006331 407 YLEELDITENEVNDEGLK----SISRC-SKLSSLKLGICSNITDEGLKHV---GSTCSMLKELDLYRSSGITDVGVVAVS 478 (650)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~ 478 (650)
+|++|++++|.+.+.+.. .+..+ ++|+.|++++| .++..+...+ ...+++|+.|++++|. +++.++..+.
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 186 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA 186 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence 355555555554432222 22233 55555666555 4443322222 2234456666665533 3333333222
Q ss_pred ---hcCCCCCEEeCCCCCCCChHHHHHh----hcCCCCcEEEecCCCCCChHHHHHHHhcC----CCccEEecCCCCCCC
Q 006331 479 ---HGCPSLEMINIAYNERITDTSLISL----SECLRLKVLEIRGCPRISAIGLSAIAMGC----RQLAMLDIKKCFNIN 547 (650)
Q Consensus 479 ---~~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~ 547 (650)
..+++|++|++++| .+++.....+ ..+++|++|++++| .+++.++..+...+ +.|++|++++| .++
T Consensus 187 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~ 263 (319)
T cd00116 187 EGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DIT 263 (319)
T ss_pred HHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCC
Confidence 22346666666665 3544433322 23555666666666 45554444443332 46666666666 555
Q ss_pred hhhHHHHH---HhCCcCCeEEeecCCCCcHHH
Q 006331 548 DNGMIPLA---QYSQNLKQINLSYCSVTDVGL 576 (650)
Q Consensus 548 ~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~ 576 (650)
+.+...+. ..+++|+.+++++|.+++.+.
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 44444333 223456666666666665533
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=6.8e-18 Score=190.09 Aligned_cols=351 Identities=18% Similarity=0.196 Sum_probs=168.1
Q ss_pred HHHHhccCcceeeccCCcCCC--h---HhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccc
Q 006331 144 AAIAEAKNLERLWLARCKLIT--D---LGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218 (650)
Q Consensus 144 ~~l~~l~~L~~L~l~~~~~~~--~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (650)
..|..+++|+.|.+..+..-. . .-...+....++|+.|.+.++ .+...+..+ ...+|+.|++.++.+. ..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f---~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF---RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC---CccCCcEEECcCcccc-cc
Confidence 456666777776664432100 0 000111111235666666665 233333332 3456666666666554 34
Q ss_pred ccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHH
Q 006331 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC 298 (650)
Q Consensus 219 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 298 (650)
+..+..+++|+.|+++++..+... +.+.. +++|+.|++.+|..+. .++..+..+++|+.|++++|..+. .+|..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~-l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~ 700 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEI--PDLSM-ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLE-ILPTG 700 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcC--Ccccc-CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcC-ccCCc
Confidence 444555666666666665443332 22333 5666666666654332 233445555566666666554332 22322
Q ss_pred hhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhc
Q 006331 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (650)
Q Consensus 299 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (650)
+ .+++|+.|++++|......+ ....+|+.|+++++. +. .++..+ .+++|++|.+.++.... +. .
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~-i~--~lP~~~-~l~~L~~L~l~~~~~~~---l~---~- 764 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETA-IE--EFPSNL-RLENLDELILCEMKSEK---LW---E- 764 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCc-cc--cccccc-cccccccccccccchhh---cc---c-
Confidence 2 34555555555553221111 112345555554442 11 011111 23444444443321000 00 0
Q ss_pred CCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccC
Q 006331 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (650)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 458 (650)
.+.. .........++|+.|++++|......+..+.++++|+.|++++|..+.... ..+ .+++|
T Consensus 765 -------------~~~~-l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP-~~~--~L~sL 827 (1153)
T PLN03210 765 -------------RVQP-LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP-TGI--NLESL 827 (1153)
T ss_pred -------------cccc-cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC-CCC--Ccccc
Confidence 0000 000011124566777776665544455566667777777777664443211 111 45667
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 459 KELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+.|++++|..+.. ++ ...++|+.|+++++ .++.. +..+..+++|+.|++.+|+.++.. +..+..+++|+.+
T Consensus 828 ~~L~Ls~c~~L~~--~p---~~~~nL~~L~Ls~n-~i~~i-P~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~L 898 (1153)
T PLN03210 828 ESLDLSGCSRLRT--FP---DISTNISDLNLSRT-GIEEV-PWWIEKFSNLSFLDMNGCNNLQRV--SLNISKLKHLETV 898 (1153)
T ss_pred CEEECCCCCcccc--cc---ccccccCEeECCCC-CCccC-hHHHhcCCCCCEEECCCCCCcCcc--CcccccccCCCee
Confidence 7777777665542 11 12356777777776 35432 344566777777777777666653 3334456677777
Q ss_pred ecCCCCCCC
Q 006331 539 DIKKCFNIN 547 (650)
Q Consensus 539 ~l~~~~~l~ 547 (650)
++++|+.+.
T Consensus 899 ~l~~C~~L~ 907 (1153)
T PLN03210 899 DFSDCGALT 907 (1153)
T ss_pred ecCCCcccc
Confidence 777776554
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=8.3e-16 Score=150.78 Aligned_cols=268 Identities=22% Similarity=0.269 Sum_probs=168.1
Q ss_pred HHhhcCCCCcEEEecCCcCCHhHHHHHH---hhcCCCcEEecCCCCCCC-h---HHHHHHHhcCCCCcEEEccCCCCcc-
Q 006331 297 KCLHNFPMLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVT-D---EELSFVVQSHKELRKLDITCCRKIT- 368 (650)
Q Consensus 297 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~-~---~~~~~~~~~~~~L~~L~l~~~~~~~- 368 (650)
..+..+.+|+.+++.++.++......+. ...++++++.++++.... . ..+...+..+++|+.|+++++....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3334444566666666665544332222 234456666666543210 1 1233344556677777777776421
Q ss_pred -HHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHH---hhcC-CCCcEEEecCCccChhhH----HhhhcCCCCCeeecCC
Q 006331 369 -YASINSITKTCTSLTSLRMECCKLVSWEAFVLI---GQQC-QYLEELDITENEVNDEGL----KSISRCSKLSSLKLGI 439 (650)
Q Consensus 369 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~ 439 (650)
...+..+... ++|++|++++|. +++.....+ ...+ ++|++|++++|.+..... ..+..+++|++|++++
T Consensus 97 ~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 97 GCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 1122222223 458888888765 333333322 1244 788999999888874332 3445678899999999
Q ss_pred CCCCChhhHHHHHh---cCccCcEEeccCCCCCCHHHHH---HHHhcCCCCCEEeCCCCCCCChHHHHHhhc-----CCC
Q 006331 440 CSNITDEGLKHVGS---TCSMLKELDLYRSSGITDVGVV---AVSHGCPSLEMINIAYNERITDTSLISLSE-----CLR 508 (650)
Q Consensus 440 ~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~ 508 (650)
| .+++.+...+.. .+++|+.|++++|. +++.+.. .....+++|++|++++| .+++.....+.. .+.
T Consensus 175 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 175 N-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNIS 251 (319)
T ss_pred C-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCC
Confidence 8 788766655543 34589999998864 5544433 33446789999999998 588766666543 379
Q ss_pred CcEEEecCCCCCChHHH---HHHHhcCCCccEEecCCCCCCChhhHHHHH---HhC-CcCCeEEeecCCC
Q 006331 509 LKVLEIRGCPRISAIGL---SAIAMGCRQLAMLDIKKCFNINDNGMIPLA---QYS-QNLKQINLSYCSV 571 (650)
Q Consensus 509 L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~-~~L~~L~l~~~~i 571 (650)
|++|++.+| .+++.+. ...+..+++|+.+++++| .+++.+...+. ... +.|+++++.++++
T Consensus 252 L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 252 LLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999 7765433 344556688999999999 78877665554 233 6899999988763
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.3e-16 Score=179.72 Aligned_cols=344 Identities=17% Similarity=0.167 Sum_probs=228.9
Q ss_pred cCcccccccceecCCCccc-----chHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhH
Q 006331 94 SSSWKLTLRSINLSRSRLF-----TKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGI 168 (650)
Q Consensus 94 ~~~~~~~L~~L~l~~~~~~-----~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 168 (650)
++..+++|+.|.+..+..- .......+....++|+.|.+.++. +...+. .+ ...+|++|++.++. +.. +
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~-~f-~~~~L~~L~L~~s~-l~~--L 626 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPS-NF-RPENLVKLQMQGSK-LEK--L 626 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCC-cC-CccCCcEEECcCcc-ccc--c
Confidence 4567788888887654210 001111222123468888888775 444442 22 46789999998875 322 1
Q ss_pred HHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHH
Q 006331 169 GRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248 (650)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 248 (650)
..-...+++|+.|+++++..+...+. ...+++|+.|++++|......|..+.++++|+.|++.+|..+...... .
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i 701 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--I 701 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--C
Confidence 11123478899999988766665553 136889999999988655677888888999999999988766654221 1
Q ss_pred hcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHh------HHHH
Q 006331 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARS------GIKA 322 (650)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------~~~~ 322 (650)
.+++|+.|++++|..+.. ++ ...++|+.|++.++. +. .+|..+ .+++|++|.+.++..... ....
T Consensus 702 -~l~sL~~L~Lsgc~~L~~--~p---~~~~nL~~L~L~~n~-i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKS--FP---DISTNISWLDLDETA-IE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred -CCCCCCEEeCCCCCCccc--cc---cccCCcCeeecCCCc-cc-cccccc-cccccccccccccchhhccccccccchh
Confidence 378899999998864332 12 224678888888873 32 444433 567888888876432100 0011
Q ss_pred HHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHh
Q 006331 323 IGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (650)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (650)
....+++|+.|++++|..... ++..+..+++|+.|++.+|..+... +... .+++|+.|++++|..+.. +.
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~-----~p 842 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRT-----FP 842 (1153)
T ss_pred hhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccc-----cc
Confidence 111357899999998865442 4556788999999999998765532 2211 578999999999976542 11
Q ss_pred hcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCC
Q 006331 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGIT 470 (650)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 470 (650)
...++|+.|++++|.+.. .+..+..+++|+.|++.+|..+..... -...+++|+.+++++|..++
T Consensus 843 ~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 DISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 134789999999998875 456788899999999999977765322 22367889999999998775
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=7e-19 Score=160.43 Aligned_cols=456 Identities=20% Similarity=0.169 Sum_probs=252.5
Q ss_pred hhHHHHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCCh
Q 006331 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGD 140 (650)
Q Consensus 61 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 140 (650)
..+|..+.....+..++.+++. ...- .+.......++.++++++...... ..+. .+-.|+.++..+|. +..
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~-ls~l----p~~i~s~~~l~~l~~s~n~~~el~--~~i~-~~~~l~dl~~~~N~-i~s 151 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNK-LSEL----PEQIGSLISLVKLDCSSNELKELP--DSIG-RLLDLEDLDATNNQ-ISS 151 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccch-Hhhc----cHHHhhhhhhhhhhccccceeecC--chHH-HHhhhhhhhccccc-ccc
Confidence 3356677777788888887765 2221 114567788888888877643221 2233 66678888888877 555
Q ss_pred HHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccccc
Q 006331 141 AAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLP 220 (650)
Q Consensus 141 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (650)
.+ ..+..+.+|..+++.++. +.......+. ++.|++|+...| .++..|.+. +.+.+|..|++..|++. ..+
T Consensus 152 lp-~~~~~~~~l~~l~~~~n~-l~~l~~~~i~--m~~L~~ld~~~N-~L~tlP~~l--g~l~~L~~LyL~~Nki~--~lP 222 (565)
T KOG0472|consen 152 LP-EDMVNLSKLSKLDLEGNK-LKALPENHIA--MKRLKHLDCNSN-LLETLPPEL--GGLESLELLYLRRNKIR--FLP 222 (565)
T ss_pred Cc-hHHHHHHHHHHhhccccc-hhhCCHHHHH--HHHHHhcccchh-hhhcCChhh--cchhhhHHHHhhhcccc--cCC
Confidence 55 577888889999998886 3333333333 688999999887 556666665 47889999999999886 455
Q ss_pred ccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhh
Q 006331 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (650)
Q Consensus 221 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (650)
.|.++..|++|+++.|.. . ...++..++++++..|++.++. +.. ++..+..+.+|..|+++++ .++ ..|..++
T Consensus 223 ef~gcs~L~Elh~g~N~i-~-~lpae~~~~L~~l~vLDLRdNk-lke--~Pde~clLrsL~rLDlSNN-~is-~Lp~sLg 295 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQI-E-MLPAEHLKHLNSLLVLDLRDNK-LKE--VPDEICLLRSLERLDLSNN-DIS-SLPYSLG 295 (565)
T ss_pred CCCccHHHHHHHhcccHH-H-hhHHHHhcccccceeeeccccc-ccc--CchHHHHhhhhhhhcccCC-ccc-cCCcccc
Confidence 899999999999988542 2 2244566568999999999876 332 3555666788999999988 343 6788888
Q ss_pred cCCCCcEEEecCCcCCHhHHHHHHhh-cCCCcEEecC-CCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhc
Q 006331 301 NFPMLQSIKFEDCPVARSGIKAIGNW-HGSLKELSLS-KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (650)
Q Consensus 301 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (650)
++ +|+.|.+.||.+...--+.+... -.-|++|.=. .+.+.+.. +.=.-..-. ......+. ...
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s------------e~~~e~~~t-~~~~~~~~-~~~ 360 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS------------EGGTETAMT-LPSESFPD-IYA 360 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC------------cccccccCC-CCCCcccc-hhh
Confidence 88 89999999997653322221100 0011111100 00000000 000000000 00000000 001
Q ss_pred CCCCCEEEcCCC--ccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCe-eecCCCCCCChhhHHHHHhcC
Q 006331 379 CTSLTSLRMECC--KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS-LKLGICSNITDEGLKHVGSTC 455 (650)
Q Consensus 379 ~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~-L~l~~~~~i~~~~~~~l~~~~ 455 (650)
..+.+.|++++- ..+.++.+...- -.-....+++.|++.+. +..+..+..+.+ +.++++ .+.. +......+
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~--~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn-~isf--v~~~l~~l 434 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAK--SEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNN-KISF--VPLELSQL 434 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhh--hcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcC-cccc--chHHHHhh
Confidence 123344444331 112222222111 12245566666655432 333333333333 233333 3331 22223356
Q ss_pred ccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCc
Q 006331 456 SMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQL 535 (650)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (650)
++|..|+++++ .+.+ ++.-..++..|+.|++++| .+.. .+..+.....++.+-.++| ++...... .+.++.+|
T Consensus 435 ~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr~-lP~~~y~lq~lEtllas~n-qi~~vd~~-~l~nm~nL 507 (565)
T KOG0472|consen 435 QKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFN-RFRM-LPECLYELQTLETLLASNN-QIGSVDPS-GLKNMRNL 507 (565)
T ss_pred hcceeeecccc-hhhh--cchhhhhhhhhheeccccc-cccc-chHHHhhHHHHHHHHhccc-cccccChH-Hhhhhhhc
Confidence 67777777643 2321 2222234456777777776 2322 2233333444555555544 55554322 34566777
Q ss_pred cEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 536 AMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 536 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
..|++.+| .+ ..+.+..+.+.+|++|++++|+++
T Consensus 508 ~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNN-DL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCC-ch--hhCChhhccccceeEEEecCCccC
Confidence 77777766 33 334445566777777777777776
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=126.32 Aligned_cols=203 Identities=21% Similarity=0.341 Sum_probs=109.6
Q ss_pred ccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006331 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (650)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (650)
.|+.|+++...-........++.+.+|+.|.+.|+.+.+.....++ .-.+|+.|+++.|.+++..++.-++++|..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666655222223444556666777777777777666666666 456677777777777776666666777777777
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCCcc-CCHHHHHHHhhcCCCCcEEEecCC-ccChhhHHhhhcCCCCCeee
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKL-VSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLK 436 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 436 (650)
|+++.|...++..-..+..--++|+.|+++++.. +.......+...||+|.+||++++ .+.......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777766444332222222234666666666532 223344444445666666666653 34444444555555556665
Q ss_pred cCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 437 LGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 437 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++.|-.+....+..+. ..|.|.+|++.+| ++|..+..+...+++|+
T Consensus 345 lsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 5555444433333222 4455555555544 22333333333444443
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.1e-14 Score=132.12 Aligned_cols=219 Identities=19% Similarity=0.218 Sum_probs=150.6
Q ss_pred HhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhh-hc
Q 006331 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SR 428 (650)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~ 428 (650)
-+++.+|+++.+.++. +...........|++++.|+++.+-.-.+..+..+++.+|+|+.|+++.|.+..-.-... ..
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3455666666666655 333333345567788888888876555566777788888888888888876643222211 14
Q ss_pred CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCC
Q 006331 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLR 508 (650)
Q Consensus 429 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 508 (650)
++.|++|.+++| .++...+..+...+|+|+.|++.+|..+....... ..+..|+.|+|++|..++.......+.++.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccc
Confidence 778999999999 88888888888899999999999875433222211 134789999999986665555556667899
Q ss_pred CcEEEecCCCCCChHHHHHH-----HhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 509 LKVLEIRGCPRISAIGLSAI-----AMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 509 L~~L~l~~~~~l~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
|+.|.++.| .+++...+.. ...+++|+.|++..| .+.+.....-....++|+.|.+..+.++..
T Consensus 273 L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 273 LNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccccccc
Confidence 999999888 6766544333 456688888888888 565444333334567888888877776643
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=4.3e-15 Score=135.80 Aligned_cols=301 Identities=17% Similarity=0.065 Sum_probs=167.4
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
.-+.++|..|. ++.++..+|+.+++|+.|+|+.|. ++.+...++.. +++|..|.+.++..+++.+...+. .+..|+
T Consensus 68 ~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~l~k~~F~-gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKG-LASLLSLVLYGNNKITDLPKGAFG-GLSSLQ 143 (498)
T ss_pred cceEEEeccCC-cccCChhhccchhhhceecccccc-hhhcChHhhhh-hHhhhHHHhhcCCchhhhhhhHhh-hHHHHH
Confidence 56677777776 777777788888888888888775 55555555554 677777777775577777766653 677777
Q ss_pred eeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhc
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (650)
.|.+.-+++.......|..+++|..|.+.++.. ....-..+.. +..++.+.+..+..+.+- +|+.+.=
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~-l~~i~tlhlA~np~icdC----------nL~wla~ 211 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQG-LAAIKTLHLAQNPFICDC----------NLPWLAD 211 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccc-hhccchHhhhcCcccccc----------ccchhhh
Confidence 777777777665556666666666666665421 1110001111 344444444443311110 1111100
Q ss_pred ccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCC
Q 006331 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (650)
Q Consensus 286 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (650)
.....+..++.+.......+....+.......+......+.+--.+.| ..........|..+++|++|+++++.
T Consensus 212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCCCc
Confidence 000111222222222222233333332222222211111111111112 22333345557888999999998876
Q ss_pred CccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCCh
Q 006331 366 KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (650)
Q Consensus 366 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~ 445 (650)
++... ...+.....++.|.+..|.. .. .-..++..+..|+.|++++|+++...+.+|.....|.+|.+-+|+.--+
T Consensus 286 -i~~i~-~~aFe~~a~l~eL~L~~N~l-~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 286 -ITRIE-DGAFEGAAELQELYLTRNKL-EF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred -cchhh-hhhhcchhhhhhhhcCcchH-HH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 44332 33344567888888887553 21 1223344778899999999999888888888888999999888755444
Q ss_pred hhHHHHH
Q 006331 446 EGLKHVG 452 (650)
Q Consensus 446 ~~~~~l~ 452 (650)
--+..+.
T Consensus 362 C~l~wl~ 368 (498)
T KOG4237|consen 362 CRLAWLG 368 (498)
T ss_pred cchHHHH
Confidence 4444444
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.43 E-value=2.6e-12 Score=116.27 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=48.1
Q ss_pred HHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcC---CCcEEecCCCC--CCChH------HHHHHHhcCCCCcEEEccCC
Q 006331 296 SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG---SLKELSLSKCS--GVTDE------ELSFVVQSHKELRKLDITCC 364 (650)
Q Consensus 296 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~--~~~~~------~~~~~~~~~~~L~~L~l~~~ 364 (650)
...+..+..+++++++||.+..+..+.++..+. +|+..++++.. ...+. .+...+..+|+|+++++++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344455667777777777777666666554333 44444444310 01110 12223344566666666666
Q ss_pred CCcc--HHHHHHHHhcCCCCCEEEcCCCc
Q 006331 365 RKIT--YASINSITKTCTSLTSLRMECCK 391 (650)
Q Consensus 365 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 391 (650)
-.-. ...+..+.+++..|++|.+.+|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4211 12334444555666666666554
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.37 E-value=3.8e-12 Score=132.96 Aligned_cols=247 Identities=32% Similarity=0.533 Sum_probs=125.1
Q ss_pred CCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCC-CccCCH--HHHHHHhhcCCCCcEEEecCCc-cChhhHHhhhc
Q 006331 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC-CKLVSW--EAFVLIGQQCQYLEELDITENE-VNDEGLKSISR 428 (650)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ 428 (650)
++.|+.+.+.++..+.+.....+...++.|+.|++++ +..... .....+...+++|+.|+++.+. +++.+...++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4444444444444444433444444445555555544 111111 1122233355666666666654 66666666554
Q ss_pred -CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCC---CCChHHHHHhh
Q 006331 429 -CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNE---RITDTSLISLS 504 (650)
Q Consensus 429 -~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~l~ 504 (650)
|++|+.|.+.+|..+++.++..+.+.+++|++|++++|..+++.++.....+|++|+.|.+..+. .+++.....+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 66677777666645666677777666777777777777666666666666666666555443332 24444333333
Q ss_pred cCC--CCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCC-CCcHHHHHHhc
Q 006331 505 ECL--RLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCS-VTDVGLIALAS 581 (650)
Q Consensus 505 ~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~ 581 (650)
... .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .+..........++.|+++.|. .++........
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~ 424 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD 424 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhh
Confidence 322 3444444555444444333322 11111134555555554 3433333333346666666663 44444444433
Q ss_pred -CCCCCceeeecccCCCHHHH
Q 006331 582 -INCLQNMTILHVVGLTPNGL 601 (650)
Q Consensus 582 -l~~L~~L~l~~~~~~~~~~~ 601 (650)
+..+..+.+.+++.+.....
T Consensus 425 ~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 425 SCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hhhccccCCccCcccccchhh
Confidence 55566666666555444433
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.37 E-value=4.1e-12 Score=132.72 Aligned_cols=261 Identities=30% Similarity=0.458 Sum_probs=176.1
Q ss_pred cCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCC-CCcc--HHHHHHHHhcCCCCCEEEcCCC
Q 006331 314 PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC-RKIT--YASINSITKTCTSLTSLRMECC 390 (650)
Q Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~ 390 (650)
.........+...++.|+.+.+.+|..+.+.++......+++|+.|+++++ .... ..........+++|+.++++.+
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 344444455554567777777777766666666666677777777777662 2222 1122334455677888888877
Q ss_pred ccCCHHHHHHHhhcCCCCcEEEecCCc-cChhhHHhhh-cCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCC--
Q 006331 391 KLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRS-- 466 (650)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~-- 466 (650)
..+++.++..++..|++|+.|.+..+. +++.+...+. .++.|++|++++|..+++.++..+...|++++.|.+..+
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG 333 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC
Confidence 777777777777778888888876665 6777766665 477788888888877777777777777887777655443
Q ss_pred -CCCCHHHHHHHHhcCC-CCCEEeCCCCCCCChHHHHHhhcCCCCc-EEEecCCCCCChHHHHHHHhcCCCccEEecCCC
Q 006331 467 -SGITDVGVVAVSHGCP-SLEMINIAYNERITDTSLISLSECLRLK-VLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 467 -~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (650)
..+++.++........ .+..+.+.+|+.+++......+ ..... .+.+.+|+.++ ..+......+..++.|+++.|
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccC
Confidence 3466555555544432 6666677777666666666655 33333 57788888886 556555555566999999999
Q ss_pred CCCChhhHHHHHHhCCcCCeEEeecCC-CCcHHH
Q 006331 544 FNINDNGMIPLAQYSQNLKQINLSYCS-VTDVGL 576 (650)
Q Consensus 544 ~~l~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~ 576 (650)
...++..+......+..++.+++.+|. ++....
T Consensus 412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 412 RLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 888888887776557889999999995 444433
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=1.3e-11 Score=111.82 Aligned_cols=184 Identities=22% Similarity=0.399 Sum_probs=107.2
Q ss_pred cCCCCcEEEecCCccChhhHHhh----hcCCCCCeeecCCCCCCChhhHHHHH------------hcCccCcEEeccCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDEGLKHVG------------STCSMLKELDLYRSS 467 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~~~~l~------------~~~~~L~~L~l~~~~ 467 (650)
.+|+|+++++|+|.+...++..+ .++..|++|.+.+| .+...+-..+. ..-+.|+++...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 56677777777777766655443 35777777777777 66554433322 234567777666542
Q ss_pred CCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHH----HHhhcCCCCcEEEecCCCCCChHHHH---HHHhcCCCccE
Q 006331 468 GITDV---GVVAVSHGCPSLEMINIAYNERITDTSL----ISLSECLRLKVLEIRGCPRISAIGLS---AIAMGCRQLAM 537 (650)
Q Consensus 468 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~ 537 (650)
+.+. .+...++.++.|+.+.+..| .|...+. ..+..+++|+.|++..| .++..+-. ..+..+++|+.
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchhee
Confidence 3322 23334445567777777776 3544433 33445777777777777 44444322 23445566777
Q ss_pred EecCCCCCCChhhHHHHH----HhCCcCCeEEeecCCCCcHHHHHHh----cCCCCCceeeec
Q 006331 538 LDIKKCFNINDNGMIPLA----QYSQNLKQINLSYCSVTDVGLIALA----SINCLQNMTILH 592 (650)
Q Consensus 538 L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~~~----~l~~L~~L~l~~ 592 (650)
|++++| .+.+.|...+. ...|+|+.|.+.+|.|+..+...+. ..|.|..|.+..
T Consensus 246 l~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 246 LNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred eccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 777777 67766666554 3356777777777777655443322 344444454443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.9e-12 Score=119.22 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=153.5
Q ss_pred HHhhcccccccchhhHHHHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCC
Q 006331 48 ESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127 (650)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 127 (650)
.......+..+-.+.+.+.-+++..|+.+.+..++ +...... .....+++++.|+++++-...+..+..+...+|+|
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~-V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYR-VEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL 174 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCcc-ccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence 34445667777777788888889999999998877 4443222 24678999999999999988999999999999999
Q ss_pred ceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCcee
Q 006331 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTL 207 (650)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 207 (650)
+.|+++.|..........-..+++|+.|.++.|. +....+..+...+|+|+.|++..|..+....... ..+..|+.|
T Consensus 175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~L 251 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQEL 251 (505)
T ss_pred hhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhc
Confidence 9999998875433333333467899999999987 5566777777789999999998885332221111 246778888
Q ss_pred ecCCCCCCc-ccccccccCCCccEEecCCCCCCChhHHH-----HHHhcCcccceeecCCCCCCChHHHHHhhccCcccc
Q 006331 208 DLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLA-----SVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 208 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
+|++|.+-+ ......+.++.|+.|+++.+.. .+.... .....+++|+.|++..|. +.++....-+..+++|+
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI-ASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLK 329 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccCc-chhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhh
Confidence 888885543 2235566788888888877532 221111 112235666666666654 33333233333344444
Q ss_pred hhhcc
Q 006331 282 QLILA 286 (650)
Q Consensus 282 ~L~l~ 286 (650)
.|.+.
T Consensus 330 ~l~~~ 334 (505)
T KOG3207|consen 330 HLRIT 334 (505)
T ss_pred hhhcc
Confidence 44433
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=1.1e-11 Score=129.87 Aligned_cols=253 Identities=18% Similarity=0.142 Sum_probs=130.5
Q ss_pred ccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006331 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (650)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (650)
.-..|+++++ .+. .+|..+. ++|+.|.+.+|.++... ...++|++|++++|. +.. ++. ..++|+.
T Consensus 202 ~~~~LdLs~~-~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-----~lp~~Lk~LdLs~N~-Lts--LP~---lp~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGES-GLT-TLPDCLP--AHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQ-LTS--LPV---LPPGLLE 266 (788)
T ss_pred CCcEEEcCCC-CCC-cCCcchh--cCCCEEEccCCcCCCCC-----CCCCCCcEEEecCCc-cCc--ccC---cccccce
Confidence 3455666666 444 4555443 36788888887776421 134677777777763 332 111 2356777
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecC
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (650)
|++.+|. +. .++ ...++|+.|++++|.. .. ++ ...++|+.|++++|.+..... ...+|+.|.++
T Consensus 267 L~Ls~N~-L~--~Lp---~lp~~L~~L~Ls~N~L-t~--LP---~~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls 330 (788)
T PRK15387 267 LSIFSNP-LT--HLP---ALPSGLCKLWIFGNQL-TS--LP---VLPPGLQELSVSDNQLASLPA----LPSELCKLWAY 330 (788)
T ss_pred eeccCCc-hh--hhh---hchhhcCEEECcCCcc-cc--cc---ccccccceeECCCCccccCCC----Ccccccccccc
Confidence 7777664 22 111 2235677777776542 21 11 123567777777776654211 12356666666
Q ss_pred CCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC
Q 006331 439 ICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP 518 (650)
Q Consensus 439 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (650)
+| .++.. ....++|+.|++++|. ++. ++. ..++|+.|++++| .++.... ...+|+.|++++|
T Consensus 331 ~N-~L~~L-----P~lp~~Lq~LdLS~N~-Ls~--LP~---lp~~L~~L~Ls~N-~L~~LP~----l~~~L~~LdLs~N- 392 (788)
T PRK15387 331 NN-QLTSL-----PTLPSGLQELSVSDNQ-LAS--LPT---LPSELYKLWAYNN-RLTSLPA----LPSGLKELIVSGN- 392 (788)
T ss_pred cC-ccccc-----cccccccceEecCCCc-cCC--CCC---CCcccceehhhcc-ccccCcc----cccccceEEecCC-
Confidence 66 55421 1112366677776543 331 111 1246666666665 3443211 1245666666666
Q ss_pred CCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeec
Q 006331 519 RISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILH 592 (650)
Q Consensus 519 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 592 (650)
.++.. +.. .++|+.|++++| .++.... .+.+|+.|++++|.++.+ +..+..+++|+.|++.+
T Consensus 393 ~Lt~L--P~l---~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 393 RLTSL--PVL---PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEG 454 (788)
T ss_pred cccCC--CCc---ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccCccccc-ChHHhhccCCCeEECCC
Confidence 44432 211 245666666666 4443221 123566666666666542 44455555666555553
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=2e-12 Score=118.70 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=60.4
Q ss_pred hhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhh
Q 006331 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLS 504 (650)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (650)
.|..+++|++|++++| .++...-..+. ....++.|.+.+|. +.. .-..+++++..|+.|++++| +|+...+.+|.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe-~~a~l~eL~L~~N~-l~~-v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~ 343 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFE-GAAELQELYLTRNK-LEF-VSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ 343 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhc-chhhhhhhhcCcch-HHH-HHHHhhhccccceeeeecCC-eeEEEeccccc
Confidence 4555666666666666 55544333332 44566666665543 221 11234557788888888888 68888888888
Q ss_pred cCCCCcEEEecCCCCCChH
Q 006331 505 ECLRLKVLEIRGCPRISAI 523 (650)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~ 523 (650)
.+.+|.+|.+-.||.--+.
T Consensus 344 ~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred ccceeeeeehccCcccCcc
Confidence 8888888888888665554
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=2.3e-11 Score=127.42 Aligned_cols=225 Identities=20% Similarity=0.132 Sum_probs=115.2
Q ss_pred CCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCC
Q 006331 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (650)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (650)
++|++|++++|.++... ...++|+.|++.+|. +. .++. ...+|+.|++++|. +.. ++ ...++|
T Consensus 242 ~~Lk~LdLs~N~LtsLP-----~lp~sL~~L~Ls~N~-L~--~Lp~---lp~~L~~L~Ls~N~-Lt~--LP---~~p~~L 304 (788)
T PRK15387 242 PELRTLEVSGNQLTSLP-----VLPPGLLELSIFSNP-LT--HLPA---LPSGLCKLWIFGNQ-LTS--LP---VLPPGL 304 (788)
T ss_pred CCCcEEEecCCccCccc-----CcccccceeeccCCc-hh--hhhh---chhhcCEEECcCCc-ccc--cc---cccccc
Confidence 45566666655554221 023455666665543 21 1111 12445566665554 221 11 123566
Q ss_pred CEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEe
Q 006331 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462 (650)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 462 (650)
+.|++++|.... +.. ...+|+.|.+++|.+..... ...+|+.|++++| .++.. ....++|+.|+
T Consensus 305 ~~LdLS~N~L~~---Lp~---lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N-~Ls~L-----P~lp~~L~~L~ 368 (788)
T PRK15387 305 QELSVSDNQLAS---LPA---LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDN-QLASL-----PTLPSELYKLW 368 (788)
T ss_pred ceeECCCCcccc---CCC---CcccccccccccCccccccc----cccccceEecCCC-ccCCC-----CCCCcccceeh
Confidence 666666653221 111 12346666666666543211 1136677777776 55531 11234666666
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCC
Q 006331 463 LYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKK 542 (650)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (650)
+++|. ++. ++. ..++|+.|++++| .++.... ..++|+.|++++| .++.. +.. ..+|+.|++++
T Consensus 369 Ls~N~-L~~--LP~---l~~~L~~LdLs~N-~Lt~LP~----l~s~L~~LdLS~N-~LssI--P~l---~~~L~~L~Ls~ 431 (788)
T PRK15387 369 AYNNR-LTS--LPA---LPSGLKELIVSGN-RLTSLPV----LPSELKELMVSGN-RLTSL--PML---PSGLLSLSVYR 431 (788)
T ss_pred hhccc-ccc--Ccc---cccccceEEecCC-cccCCCC----cccCCCEEEccCC-cCCCC--Ccc---hhhhhhhhhcc
Confidence 66543 331 222 2246777777777 3553221 1356778888887 55542 222 24677788887
Q ss_pred CCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHh
Q 006331 543 CFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALA 580 (650)
Q Consensus 543 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 580 (650)
| .++..... ...+++|+.|++++|++++..+..+.
T Consensus 432 N-qLt~LP~s--l~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 432 N-QLTRLPES--LIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred C-cccccChH--HhhccCCCeEECCCCCCCchHHHHHH
Confidence 7 56543211 23457788888888888776665553
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=1e-08 Score=108.52 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=26.4
Q ss_pred ccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCc
Q 006331 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCK 161 (650)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 161 (650)
+.|+.|++++|....... . .+++|++|++++|. ++.++. .+ .++|+.|++++|.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~--~---l~~nL~~L~Ls~N~-LtsLP~-~l--~~~L~~L~Ls~N~ 252 (754)
T PRK15370 199 EQITTLILDNNELKSLPE--N---LQGNIKTLYANSNQ-LTSIPA-TL--PDTIQEMELSINR 252 (754)
T ss_pred cCCcEEEecCCCCCcCCh--h---hccCCCEEECCCCc-cccCCh-hh--hccccEEECcCCc
Confidence 456666766665332111 1 12466666666654 333332 11 2356666666554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=1.9e-09 Score=91.86 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=24.4
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc---HHHHHHhc
Q 006331 505 ECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD---VGLIALAS 581 (650)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~---~~~~~~~~ 581 (650)
.++.|++|++++| .+++.+ ..+...+++|++|++++| .|.+.........+|+|+.|++.+|++++ .....+..
T Consensus 62 ~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 62 GLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp --TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred ChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 3444444444444 343321 111123444555555444 34332222222334555555555554432 22223445
Q ss_pred CCCCCceeeecc
Q 006331 582 INCLQNMTILHV 593 (650)
Q Consensus 582 l~~L~~L~l~~~ 593 (650)
+|+|+.|+-..+
T Consensus 139 lP~Lk~LD~~~V 150 (175)
T PF14580_consen 139 LPSLKVLDGQDV 150 (175)
T ss_dssp -TT-SEETTEET
T ss_pred cChhheeCCEEc
Confidence 555555554433
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.81 E-value=4.6e-11 Score=96.59 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+.+|+.|++.+| .+.+.+... .++++|+.|+++-|.+. ..|..|+.+|.|+.|++.++......-+..+.. +..|
T Consensus 55 l~nlevln~~nn-qie~lp~~i--ssl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~-m~tl 129 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEELPTSI--SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-MTTL 129 (264)
T ss_pred hhhhhhhhcccc-hhhhcChhh--hhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH-HHHH
Confidence 344444444443 233333333 25666666666666554 467777777777777777765444443444444 5667
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCC
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 316 (650)
+.|.+++++ ...++..++++++|+.|.++++.-+ ..|..++.+..|++|++.+|.++
T Consensus 130 ralyl~dnd---fe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 130 RALYLGDND---FEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHhcCCC---cccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceee
Confidence 777777654 1234555666777777777766333 56667777777777777777655
No 32
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.77 E-value=2e-09 Score=70.04 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhh
Q 006331 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (650)
Q Consensus 12 ~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~ 51 (650)
|..||+||+.+||+ ||+ ..|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 998 999999999999999988654
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.3e-08 Score=90.45 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=48.6
Q ss_pred cceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccccccc-ccCCCccE
Q 006331 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV-VKLQYLED 230 (650)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~ 230 (650)
++.|.+.++..-+...+..+...+..++.+++.+|.......+..+..++|.|+.|+++.|.+.. .+..+ ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEE
Confidence 33444444443333345666666778888888887555555566666778888888888776652 12222 23445555
Q ss_pred EecCC
Q 006331 231 LVLEG 235 (650)
Q Consensus 231 L~l~~ 235 (650)
|.+.+
T Consensus 126 lVLNg 130 (418)
T KOG2982|consen 126 LVLNG 130 (418)
T ss_pred EEEcC
Confidence 55555
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=3.4e-08 Score=104.69 Aligned_cols=255 Identities=17% Similarity=0.168 Sum_probs=153.5
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
.+...|+++++. ++.++. .+ .++|+.|++++|. ++..... .+++|+.|++++| .+..++... .++|
T Consensus 178 ~~~~~L~L~~~~-LtsLP~-~I--p~~L~~L~Ls~N~-LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l----~~~L 243 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPA-CI--PEQITTLILDNNE-LKSLPEN----LQGNIKTLYANSN-QLTSIPATL----PDTI 243 (754)
T ss_pred cCceEEEeCCCC-cCcCCc-cc--ccCCcEEEecCCC-CCcCChh----hccCCCEEECCCC-ccccCChhh----hccc
Confidence 457788888765 555442 12 2578888888886 3332111 1358888888887 455444332 3578
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (650)
+.|++++|.+. ..|..+. .+|+.|++++|.. ... +..+ .++|+.|++++|. +.. ++..+ .++|+.|+
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L-~~L-P~~l---~~sL~~L~Ls~N~-Lt~--LP~~l--p~sL~~L~ 310 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKI-SCL-PENL---PEELRYLSVYDNS-IRT--LPAHL--PSGITHLN 310 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCcc-Ccc-cccc---CCCCcEEECCCCc-ccc--Ccccc--hhhHHHHH
Confidence 88888888876 4454443 5788888887643 321 1111 3578888888875 332 12111 24688888
Q ss_pred cccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 006331 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (650)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (650)
+++| .+. .+|..+ .++|+.|++++|.++.. +..+ +++|+.|++++|. +.. ++..+ .++|+.|++++|
T Consensus 311 Ls~N-~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N~-L~~--LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 311 VQSN-SLT-ALPETL--PPGLKTLEAGENALTSL-PASL---PPELQVLDVSKNQ-ITV--LPETL--PPTITTLDVSRN 377 (754)
T ss_pred hcCC-ccc-cCCccc--cccceeccccCCccccC-Chhh---cCcccEEECCCCC-CCc--CChhh--cCCcCEEECCCC
Confidence 8887 343 233322 25788899988887642 2222 3689999998875 331 22212 368899999888
Q ss_pred CCccHHHHHHHHhcCCCCCEEEcCCCccCCH-HHHHHHhhcCCCCcEEEecCCccChhhHH
Q 006331 365 RKITYASINSITKTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDEGLK 424 (650)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (650)
. +.... ..+. ..|+.|++++|....- ..+..+...++++..+++.+|.+......
T Consensus 378 ~-Lt~LP-~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 378 A-LTNLP-ENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred c-CCCCC-HhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 6 33211 1111 3677888888654321 12233333568889999999888754443
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.2e-08 Score=90.58 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=129.3
Q ss_pred EEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhh-hcCCCCCeee
Q 006331 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSKLSSLK 436 (650)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~ 436 (650)
-+.+.++..-+......+...++.++.+++.+|..-.+.....+.+++|.|+.|+++.|.+.... ..+ ....+|++|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEE
Confidence 34444444333344555555667777777777665556666667777788888888777665432 222 2455777777
Q ss_pred cCCCCCCChhhHHHHHhcCccCcEEeccCCC----CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhh-cCCCCcE
Q 006331 437 LGICSNITDEGLKHVGSTCSMLKELDLYRSS----GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLS-ECLRLKV 511 (650)
Q Consensus 437 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~ 511 (650)
+.|. .+.-.....+...+|.++.|.++.|+ ++.+..... .-+.+++|+.-.|....-.....++ .+|++..
T Consensus 128 LNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 128 LNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 7776 66666666666677777777777652 122222222 2256777777776321111222233 3788888
Q ss_pred EEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 512 LEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 512 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
+.+..|| +.+.........++.+.-|.++.+ +|.+.....-...++.|..|.++++++.+.
T Consensus 204 v~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 204 VFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred eeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 8888883 444444445556677777888888 777666665556678888888888887653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1e-08 Score=87.47 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=15.6
Q ss_pred CCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCC
Q 006331 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCF 544 (650)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 544 (650)
++.|+.|++++| .+++........+++|++|++++| .+.+..--..+..+++|+.|++.+||
T Consensus 63 L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 63 LPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 344444444444 343332111123444444444444 33332111222344444444444443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1e-08 Score=110.42 Aligned_cols=107 Identities=24% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCCccEEecCCCCC-CChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCC
Q 006331 225 LQYLEDLVLEGCHG-IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (650)
Q Consensus 225 l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 303 (650)
.++|++|-+.++.. ......+.|.. +|.|+.|++++|. .-..+|..++.+-+||.|+++++ .+. .+|..+.++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~-m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t-~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRS-LPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDT-GIS-HLPSGLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhh-CcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCC-Ccc-ccchHHHHHH
Confidence 34555555555432 22222222333 5666666666544 22334555555666666666655 232 5556666666
Q ss_pred CCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCC
Q 006331 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (650)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (650)
.|.+|++..+...... ..+...+.+|++|.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPR 651 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeec
Confidence 6666666554322222 12222355566665544
No 38
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.67 E-value=4.5e-10 Score=90.99 Aligned_cols=153 Identities=18% Similarity=0.102 Sum_probs=105.2
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+.+++.|.++.| .+...+... ..+.+|+.|++.+|.++ +.|..+.++++|+.|+++-+..... +..++. +|.|
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppni--a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l--prgfgs-~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNI--AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL--PRGFGS-FPAL 104 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcH--HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC--ccccCC-Cchh
Confidence 456677777776 444444444 36788889999888887 5788888888898888876543221 233444 7888
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
+.|++..+. +....++.-|..+..|+.|.+.++. .+..|..++++.+|+.|.+.+|.+- ..+..++ .+..|++|.
T Consensus 105 evldltynn-l~e~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELH 179 (264)
T ss_pred hhhhccccc-cccccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHh
Confidence 888887765 5555666666667778888887772 2366777888888888888887654 3344555 566777777
Q ss_pred cCCCC
Q 006331 335 LSKCS 339 (650)
Q Consensus 335 l~~~~ 339 (650)
+.++.
T Consensus 180 iqgnr 184 (264)
T KOG0617|consen 180 IQGNR 184 (264)
T ss_pred cccce
Confidence 77764
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=98.65 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=104.3
Q ss_pred CCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHH-------HHHHHh------cCCCCcEEEccCCCCccHH
Q 006331 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEE-------LSFVVQ------SHKELRKLDITCCRKITYA 370 (650)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~------~~~~L~~L~l~~~~~~~~~ 370 (650)
++...++.+..........+.. ..|+++.+.+........ +..++. .-.+|+.|++++...+...
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4556666665555554444432 226666665433221111 111111 1256666777666555555
Q ss_pred HHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCC-hhhHH
Q 006331 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT-DEGLK 449 (650)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~-~~~~~ 449 (650)
........+|+|+.|.+.+-. +....+..++..+|+|..||++++.+... ..++++++|+.|.+.+- .+. ...+.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL-e~e~~~~l~ 214 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL-EFESYQDLI 214 (699)
T ss_pred HHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC-CCCchhhHH
Confidence 555555666777777776633 33334555555677777777777666543 45566666666666654 222 23344
Q ss_pred HHHhcCccCcEEeccCCCCCCHHH-H---HHHHhcCCCCCEEeCCCCCCCChHHHHHhh-cCCCCcEEEec
Q 006331 450 HVGSTCSMLKELDLYRSSGITDVG-V---VAVSHGCPSLEMINIAYNERITDTSLISLS-ECLRLKVLEIR 515 (650)
Q Consensus 450 ~l~~~~~~L~~L~l~~~~~~~~~~-~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~ 515 (650)
.++ .+.+|+.||++.-....+.. + .+....+|.|+.|+.++. .++....+.+- .-++|+.+..-
T Consensus 215 ~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 215 DLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhh
Confidence 444 56666667666543333221 1 111123566666666654 35444444443 24455544443
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1e-06 Score=77.66 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=103.1
Q ss_pred cCCCCcEEEecCCccChhhHHh----hhcCCCCCeeecCCCCCCChhhHHHHH------------hcCccCcEEeccCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKS----ISRCSKLSSLKLGICSNITDEGLKHVG------------STCSMLKELDLYRSS 467 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~i~~~~~~~l~------------~~~~~L~~L~l~~~~ 467 (650)
.||+|+..++++|.+....+.. +++...|++|.+++| .+...+-..+. ..-|.|+.+....|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 6888888888888776655543 345778888888887 55433322221 245777777776653
Q ss_pred CC--CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHh-----hcCCCCcEEEecCCCCCChHHHHH---HHhcCCCccE
Q 006331 468 GI--TDVGVVAVSHGCPSLEMINIAYNERITDTSLISL-----SECLRLKVLEIRGCPRISAIGLSA---IAMGCRQLAM 537 (650)
Q Consensus 468 ~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~ 537 (650)
.. +..-.....+....|+.+.+..| .|...+...+ ..+.+|+.|++..| .++-.+... .....+.|+.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhh
Confidence 22 22223333444467888888777 4665544333 34778888888887 555544333 2345567788
Q ss_pred EecCCCCCCChhhHHHHH-----HhCCcCCeEEeecCCCC
Q 006331 538 LDIKKCFNINDNGMIPLA-----QYSQNLKQINLSYCSVT 572 (650)
Q Consensus 538 L~l~~~~~l~~~~~~~~~-----~~~~~L~~L~l~~~~i~ 572 (650)
|.+.+| .++..|...+. ...|+|..|...+|.+.
T Consensus 247 L~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 888888 77766666554 23677888888777643
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=3.8e-08 Score=106.06 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=19.5
Q ss_pred CCCCCcHHHHHHHHhhccCC--cccccchhhhhhhHHH
Q 006331 11 PFDFLSEEIIFNILDHLNND--PFARKSFSLTCRNFYS 46 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~--~~~~~~~~~vc~~w~~ 46 (650)
+++.|| +-+.+.|- |+.= -+.-.....++..|-.
T Consensus 404 Syd~L~-~~lK~CFL-ycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 404 SYDNLP-EELKSCFL-YCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred cHhhhh-HHHHHHHH-hhccCCcccccchHHHHHHHHh
Confidence 567777 55556776 6641 2234455556666654
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=98.60 Aligned_cols=162 Identities=17% Similarity=0.216 Sum_probs=114.9
Q ss_pred cCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCcc
Q 006331 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (650)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 229 (650)
.+|++|++++...........++..+|.|++|.+.+-. +.......++.++|+|..|+++++.+++ ...++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHH
Confidence 68888888887666655667777788999999998853 3333355566789999999999998874 37788899999
Q ss_pred EEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEE
Q 006331 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (650)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 309 (650)
.|.+.+-.......+..+.. +++|+.||++.........+ .....+.-..+|+|+.|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~i---------------------i~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKI---------------------IEQYLECGMVLPELRFLD 256 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHH---------------------HHHHHHhcccCccccEEe
Confidence 99998877766666777777 89999999987553222111 112222223467788888
Q ss_pred ecCCcCCHhHHHHHHhhcCCCcEEecC
Q 006331 310 FEDCPVARSGIKAIGNWHGSLKELSLS 336 (650)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (650)
.+++.+.+...+.+...-|+|+.+..-
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 888777777777776666666665543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=2.3e-08 Score=88.95 Aligned_cols=102 Identities=17% Similarity=0.317 Sum_probs=46.0
Q ss_pred CCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
.|.++.|++++| .+.... .+..+++|..|++++| .++. +..+-..+.++++|.+++| .+.+.+ -...+-+
T Consensus 306 ~Pkir~L~lS~N-~i~~v~--nLa~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N-~iE~LS---GL~KLYS 375 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTVQ--NLAELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQN-KIETLS---GLRKLYS 375 (490)
T ss_pred ccceeEEecccc-ceeeeh--hhhhcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhh-hHhhhh---hhHhhhh
Confidence 455555555555 233222 2444555555555555 3333 2222233455555555555 332211 1122345
Q ss_pred CCeEEeecCCCCcHH-HHHHhcCCCCCceeeec
Q 006331 561 LKQINLSYCSVTDVG-LIALASINCLQNMTILH 592 (650)
Q Consensus 561 L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~ 592 (650)
|..||+++|+|.... ...++++|+|+.+.+.+
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 555555555554322 23345555555555543
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=2.7e-06 Score=75.06 Aligned_cols=60 Identities=27% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCccEEecCCCCCCChhhHHHHH----HhCCcCCeEEeecCCCCcHHHHHHh----cCCCCCceeeecc
Q 006331 533 RQLAMLDIKKCFNINDNGMIPLA----QYSQNLKQINLSYCSVTDVGLIALA----SINCLQNMTILHV 593 (650)
Q Consensus 533 ~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~~~----~l~~L~~L~l~~~ 593 (650)
.+|+.+.+..| .|...|+..+. ..+.+|+.||+.+|-++..+...++ ..+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 34555555555 44444333322 2244555555555555444443322 3344555555555
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=4.5e-08 Score=87.12 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCC
Q 006331 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLR 508 (650)
Q Consensus 429 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 508 (650)
-..|+.+++++| .|+. +..-.+-.|.++.|+++.|.... +.. ...+++|+.|++++|. ++... ..-.++-+
T Consensus 283 Wq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N~i~~---v~n-La~L~~L~~LDLS~N~-Ls~~~-Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQNRIRT---VQN-LAELPQLQLLDLSGNL-LAECV-GWHLKLGN 353 (490)
T ss_pred Hhhhhhcccccc-chhh--hhhhhhhccceeEEeccccceee---ehh-hhhcccceEeecccch-hHhhh-hhHhhhcC
Confidence 346677777777 5542 22222345778888887754333 222 2246788888888872 33211 11124677
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 509 LKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 509 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
.++|.+.+| .+.+. ..+..+-+|..|++++| +|.......-.+.+|.|+.+.+.+|++..
T Consensus 354 IKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred Eeeeehhhh-hHhhh---hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888887 55442 22345567888888888 66554444444667888888888887664
No 46
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.29 E-value=1.5e-07 Score=61.75 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhh
Q 006331 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~ 51 (650)
+|..||+|++.+||+ |++ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 467899999999999 999 999999999999999987654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=7.8e-08 Score=96.12 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=67.5
Q ss_pred cCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 006331 454 TCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCR 533 (650)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (650)
-+|.|+.|++++|. +++. . ....|+.|++|+|++| .+...+.-....+. |..|.+++| .++.. ..+.++.
T Consensus 185 ll~ale~LnLshNk-~~~v--~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL---~gie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK-FTKV--D-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNN-ALTTL---RGIENLK 254 (1096)
T ss_pred HHHHhhhhccchhh-hhhh--H-HHHhcccccccccccc-hhccccccchhhhh-heeeeeccc-HHHhh---hhHHhhh
Confidence 45778888887754 3322 2 2335788888888887 46555433333444 788888887 44442 2234567
Q ss_pred CccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 534 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
+|+.||+++| .+.+..-......+..|+.|++.||++-
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888887 5554443334455567888888888764
No 48
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.11 E-value=1.4e-06 Score=54.98 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.3
Q ss_pred CcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhh
Q 006331 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (650)
Q Consensus 15 LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~ 51 (650)
||+|++.+||. |++ ..|+.+++.|||+|+.+....
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999 998 999999999999999987654
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=3.7e-06 Score=71.03 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=57.7
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecC-CCCcHHHHHHhcCCCCCc
Q 006331 509 LKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYC-SVTDVGLIALASINCLQN 587 (650)
Q Consensus 509 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~ 587 (650)
++.++-+++ .|..+|+..+ ..++.++.|.+.+|..+.|.++..+.+..++|+.|+|++| +||+.+...+..+++|+.
T Consensus 103 IeaVDAsds-~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCc-hHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 444555554 4555544433 4556666666666666666666666666677777777777 577777777788888888
Q ss_pred eeeecccCCC
Q 006331 588 MTILHVVGLT 597 (650)
Q Consensus 588 L~l~~~~~~~ 597 (650)
|.+.+++.+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 8888776654
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.3e-06 Score=71.31 Aligned_cols=89 Identities=25% Similarity=0.316 Sum_probs=56.0
Q ss_pred CCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCc
Q 006331 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLK 510 (650)
Q Consensus 431 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (650)
.++.++-+++ .|..+++..+. .++.++.|.+.+|..+.|.++..+....++|+.|+|++|+.||+.+...+..+++|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3455555555 56666666554 566666666666666666666666555667777777777777777766666677777
Q ss_pred EEEecCCCCCC
Q 006331 511 VLEIRGCPRIS 521 (650)
Q Consensus 511 ~L~l~~~~~l~ 521 (650)
.|.+.+-+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 66666554443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=5.8e-07 Score=90.07 Aligned_cols=126 Identities=21% Similarity=0.164 Sum_probs=73.7
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
.|...+++.|. +.. ....+.-++.|+.|+|+.|.+.. ...+ +.|++|++|+|++|. +..++-.-. ..|. |.
T Consensus 165 ~L~~a~fsyN~-L~~-mD~SLqll~ale~LnLshNk~~~---v~~L-r~l~~LkhLDlsyN~-L~~vp~l~~-~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVL-MDESLQLLPALESLNLSHNKFTK---VDNL-RRLPKLKHLDLSYNC-LRHVPQLSM-VGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhh-HHh-HHHHHHHHHHhhhhccchhhhhh---hHHH-Hhcccccccccccch-hccccccch-hhhh-he
Confidence 34445555444 222 23566777888888888876433 2222 337888888888763 222221110 1333 77
Q ss_pred eeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCC
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (650)
.|.+++|.++ ....+.++.+|+.|++++|-......+..+.. +..|+.|.+.+|+
T Consensus 236 ~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCc
Confidence 7777777664 45566677778888887764444333444444 6677777777765
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=5.8e-06 Score=57.49 Aligned_cols=59 Identities=29% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRS 466 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 466 (650)
|+|++|++++|.+.......+..+++|++|++++| .++...... ...+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcCC
Confidence 45666666666666555556666666666666665 554332222 225555555555544
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.77 E-value=6.9e-06 Score=57.08 Aligned_cols=59 Identities=24% Similarity=0.177 Sum_probs=32.9
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCC
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (650)
|+|++|++++| .+..++...+ ..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35555666555 3444433332 25566666666666665555555666666666666654
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.59 E-value=4.6e-05 Score=77.03 Aligned_cols=152 Identities=25% Similarity=0.305 Sum_probs=82.1
Q ss_pred CCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 006331 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEM 486 (650)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (650)
+|+.|+++++.+.... ..+..+++|+.|+++.| .+++..... ...++|+.|+++++. +.+ ++........|++
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~--~~~~~L~~L~ls~N~-i~~--l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPKLL--SNLSNLNNLDLSGNK-ISD--LPPEIELLSALEE 213 (394)
T ss_pred hcccccccccchhhhh-hhhhccccccccccCCc-hhhhhhhhh--hhhhhhhheeccCCc-ccc--Cchhhhhhhhhhh
Confidence 5666666666654421 34555666777777666 555332221 134666777776643 331 1111112244777
Q ss_pred EeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEe
Q 006331 487 INIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINL 566 (650)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 566 (650)
+.+++|..+. .+..+..+.++..+.+.++ .+.. +...+..++++++|++++| .+++... .....+++.|++
T Consensus 214 l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n-~~~~--~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~ 284 (394)
T COG4886 214 LDLSNNSIIE--LLSSLSNLKNLSGLELSNN-KLED--LPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDL 284 (394)
T ss_pred hhhcCCccee--cchhhhhcccccccccCCc-eeee--ccchhccccccceeccccc-ccccccc---ccccCccCEEec
Confidence 7777763121 2233445666666666665 3333 1334455667777777777 5554443 234467777777
Q ss_pred ecCCCCcH
Q 006331 567 SYCSVTDV 574 (650)
Q Consensus 567 ~~~~i~~~ 574 (650)
+++.++..
T Consensus 285 s~n~~~~~ 292 (394)
T COG4886 285 SGNSLSNA 292 (394)
T ss_pred cCcccccc
Confidence 77766544
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=0.00017 Score=76.60 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=61.3
Q ss_pred ccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcE
Q 006331 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307 (650)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 307 (650)
++.|+|.++...+ .....+.. +++|+.|++++|. + ...++..+..+++|+.|++++| .+.+..|..+..+++|+.
T Consensus 420 v~~L~L~~n~L~g-~ip~~i~~-L~~L~~L~Ls~N~-l-~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRG-FIPNDISK-LRHLQSINLSGNS-I-RGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccc-cCCHHHhC-CCCCCEEECCCCc-c-cCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 4455555543222 11233333 5566666665554 1 1123344555666666666666 455566777777888888
Q ss_pred EEecCCcCCHhHHHHHHhhcCCCcEEecCCCC
Q 006331 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339 (650)
Q Consensus 308 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (650)
|++++|.+.+..+..+.....++..+++.++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88888877776666665334455666666654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=3.2e-05 Score=68.69 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=53.3
Q ss_pred ccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCc
Q 006331 456 SMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQL 535 (650)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (650)
.+.+.|++.+|. ++|..+. ..++.|+.|.|+-| +|+. ...+..|++|++|+|..| .|.+..--..+.++++|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic---~kMp~lEVLsLSvN-kIss--L~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISIC---EKMPLLEVLSLSVN-KISS--LAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCC-ccHHHHH---HhcccceeEEeecc-cccc--chhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 345555555543 4444322 24566666666665 3432 234445666666666666 55554444445666666
Q ss_pred cEEecCCCCCCChhhHH---HHHHhCCcCCeEE
Q 006331 536 AMLDIKKCFNINDNGMI---PLAQYSQNLKQIN 565 (650)
Q Consensus 536 ~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~ 565 (650)
+.|+|..||.....+-. .....+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666666554433221 1224456666654
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.40 E-value=0.00015 Score=73.29 Aligned_cols=148 Identities=26% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccce
Q 006331 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (650)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 256 (650)
+|+.|+++++ .+...+... ..+++|+.|++++|.+.+ .+...+..+.|+.|+++++.... ++........|++
T Consensus 141 nL~~L~l~~N-~i~~l~~~~--~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~---l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDN-KIESLPSPL--RNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD---LPPEIELLSALEE 213 (394)
T ss_pred hccccccccc-chhhhhhhh--hccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcccc---Cchhhhhhhhhhh
Confidence 5555555554 222221111 245555555555555542 23333345555555555543222 1111111334666
Q ss_pred eecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecC
Q 006331 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (650)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (650)
+.++++..+ .....+..+.++..+.+.++. +. ..+..++.++++++|++++|.++.... ++ ...+++.|+++
T Consensus 214 l~~~~N~~~---~~~~~~~~~~~l~~l~l~~n~-~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~-~~~~l~~L~~s 285 (394)
T COG4886 214 LDLSNNSII---ELLSSLSNLKNLSGLELSNNK-LE-DLPESIGNLSNLETLDLSNNQISSISS--LG-SLTNLRELDLS 285 (394)
T ss_pred hhhcCCcce---ecchhhhhcccccccccCCce-ee-eccchhccccccceecccccccccccc--cc-ccCccCEEecc
Confidence 666655211 113334445555555544441 11 224555566667777777776654433 33 55677777776
Q ss_pred CCC
Q 006331 337 KCS 339 (650)
Q Consensus 337 ~~~ 339 (650)
++.
T Consensus 286 ~n~ 288 (394)
T COG4886 286 GNS 288 (394)
T ss_pred Ccc
Confidence 654
No 58
>PLN03150 hypothetical protein; Provisional
Probab=97.35 E-value=0.00044 Score=73.50 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=60.4
Q ss_pred CCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcE
Q 006331 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKV 511 (650)
Q Consensus 432 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 511 (650)
++.|++++| .+.......+. .+++|+.|++++|.... .++.....+++|+.|++++| .++...+..++++++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 555666665 55433333333 56666677766653221 13333446677777777777 466666666777777777
Q ss_pred EEecCCCCCChHHHHHHHhc-CCCccEEecCCCC
Q 006331 512 LEIRGCPRISAIGLSAIAMG-CRQLAMLDIKKCF 544 (650)
Q Consensus 512 L~l~~~~~l~~~~~~~~~~~-~~~L~~L~l~~~~ 544 (650)
|++++| .++.. ++..+.. ..++..+++.+|+
T Consensus 495 L~Ls~N-~l~g~-iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGN-SLSGR-VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCC-ccccc-CChHHhhccccCceEEecCCc
Confidence 777777 44433 2222222 2455667777764
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00012 Score=65.26 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
+.+.++|+.-+| .++|..+ ..+++.|+.|.|+-| +|+.. .-+..|++|++|++..| .|.+..-.....++|+
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvN-kIssL---~pl~rCtrLkElYLRkN-~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVN-KISSL---APLQRCTRLKELYLRKN-CIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecc-ccccc---hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCch
Confidence 456667777776 4655432 235677777777776 55542 23356677777777766 6665555555566677
Q ss_pred CCeEEeecCC
Q 006331 561 LKQINLSYCS 570 (650)
Q Consensus 561 L~~L~l~~~~ 570 (650)
|+.|+|..|+
T Consensus 90 Lr~LWL~ENP 99 (388)
T KOG2123|consen 90 LRTLWLDENP 99 (388)
T ss_pred hhhHhhccCC
Confidence 7777776665
No 60
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.17 E-value=0.00034 Score=70.66 Aligned_cols=169 Identities=24% Similarity=0.293 Sum_probs=83.6
Q ss_pred CCCcEEEecCCccChhhHHhh----hcCCCCCeeecCCCCCCChhhHHHHHh---cCccCcEEeccCCCCCCHHH--HHH
Q 006331 406 QYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDEGLKHVGS---TCSMLKELDLYRSSGITDVG--VVA 476 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~--~~~ 476 (650)
+.++.++++.|.+.+.+...+ ..++.++.+.+..+ .+++.+...+.+ ....+..+.+.++...+..+ +..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLA 340 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHH
Confidence 455777777777766555444 34667777777777 666655554432 22344555555444333221 111
Q ss_pred HHhcCCCCCEEeCCCCCCCChHHHHHhh----c-CCCCcEEEecCCCCCChHH---HHHHHhcCCCccEEecCCCCCCCh
Q 006331 477 VSHGCPSLEMINIAYNERITDTSLISLS----E-CLRLKVLEIRGCPRISAIG---LSAIAMGCRQLAMLDIKKCFNIND 548 (650)
Q Consensus 477 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~-~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~l~~ 548 (650)
.......+..+...++....+.....+. + -+.+..+++..+ .+.+.+ +.......+.++.++++.| ...+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~l~~n-~~~~ 418 (478)
T KOG4308|consen 341 EADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQ-VIEGRGALRLAAQLASNEKLEILDLSLN-SLHD 418 (478)
T ss_pred HHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhcc-ccccHHHHHhhhhhhhcchhhhhhhhcC-ccch
Confidence 1111122222222222234444333332 1 223455555554 222221 2223345577777888777 4444
Q ss_pred hhHHHHH----HhCCcCCeEEeecCCCCcHHHHH
Q 006331 549 NGMIPLA----QYSQNLKQINLSYCSVTDVGLIA 578 (650)
Q Consensus 549 ~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~ 578 (650)
.+...+. ... .++.++++.++++..+...
T Consensus 419 ~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 451 (478)
T KOG4308|consen 419 EGAEVLTEQLSRNG-SLKALRLSRNPITALGTEE 451 (478)
T ss_pred hhHHHHHHhhhhcc-cchhhhhccChhhhcchHH
Confidence 4444443 234 7777777777776555443
No 61
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.10 E-value=8e-05 Score=73.18 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=16.2
Q ss_pred CCceeecCCCCCCcccccccccCCCccEEecCCC
Q 006331 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (650)
-|+.|-+++|+++ ..+..++..++|.+|+.+.|
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhh
Confidence 3555555555544 34444444455555555544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.06 E-value=0.00036 Score=67.70 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=85.1
Q ss_pred hhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhh
Q 006331 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLS 504 (650)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (650)
-+..+.+++.|++++| .++... ...++|++|.+++|..++. ++... .++|++|.+++|..+...
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~sL------ 110 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISGL------ 110 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccccc------
Confidence 3445789999999999 666432 2335799999999887652 22111 268999999998655421
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCC
Q 006331 505 ECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINC 584 (650)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~ 584 (650)
.++|+.|++.++ .... +..+. ++|+.|.+.++......... ...+++|+.|++++|..... +..+ -.+
T Consensus 111 -P~sLe~L~L~~n-~~~~--L~~LP---ssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~L-P~~L--P~S 178 (426)
T PRK15386 111 -PESVRSLEIKGS-ATDS--IKNVP---NGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIIL-PEKL--PES 178 (426)
T ss_pred -ccccceEEeCCC-CCcc--cccCc---chHhheeccccccccccccc--cccCCcccEEEecCCCcccC-cccc--ccc
Confidence 346888888765 3332 12221 57888888654221111101 12346899999999975431 1111 246
Q ss_pred CCceeeec
Q 006331 585 LQNMTILH 592 (650)
Q Consensus 585 L~~L~l~~ 592 (650)
|+.|.+..
T Consensus 179 Lk~L~ls~ 186 (426)
T PRK15386 179 LQSITLHI 186 (426)
T ss_pred CcEEEecc
Confidence 78888764
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.04 E-value=0.00016 Score=73.01 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=16.1
Q ss_pred cEEecCCCCCCChhhHHHHH---HhCCcCCeEEeecCCCCcH
Q 006331 536 AMLDIKKCFNINDNGMIPLA---QYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 536 ~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~~ 574 (650)
+.++++.| .+++.+...+. ..++.++.+.++.|++.+.
T Consensus 265 ~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 265 RVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44444444 34433333332 2233444444444444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.0003 Score=62.51 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=47.0
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCC---CcHHHHHHhc
Q 006331 505 ECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSV---TDVGLIALAS 581 (650)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i---~~~~~~~~~~ 581 (650)
.+++|++|.++.|..--..++...+..+++|++|++++| ++.+.....-...+++|..|++.+|.. .+..-..|.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 455666666666522222234444455566666666666 555433333334455666666666643 3333344555
Q ss_pred CCCCCceeeeccc
Q 006331 582 INCLQNMTILHVV 594 (650)
Q Consensus 582 l~~L~~L~l~~~~ 594 (650)
+++|..|+-.++.
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 6666666655554
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.95 E-value=0.0011 Score=41.82 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=4.9
Q ss_pred CcCCeEEeecCCC
Q 006331 559 QNLKQINLSYCSV 571 (650)
Q Consensus 559 ~~L~~L~l~~~~i 571 (650)
++|+.|++++|+|
T Consensus 24 ~~L~~L~l~~N~i 36 (44)
T PF12799_consen 24 PNLETLNLSNNPI 36 (44)
T ss_dssp TTSSEEEETSSCC
T ss_pred CCCCEEEecCCCC
Confidence 3333333333333
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.89 E-value=8.4e-05 Score=75.18 Aligned_cols=166 Identities=25% Similarity=0.338 Sum_probs=99.3
Q ss_pred cCCCCcEEEecCCccChhhHHh-hhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 404 QCQYLEELDITENEVNDEGLKS-ISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
.+++|+.|++.+|.+... .. +..+++|+.|++++| .|+.... +. .++.|+.|++.+|..-...++. .++
T Consensus 93 ~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N-~I~~i~~--l~-~l~~L~~L~l~~N~i~~~~~~~----~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFN-KITKLEG--LS-TLTLLKELNLSGNLISDISGLE----SLK 162 (414)
T ss_pred cccceeeeeccccchhhc--ccchhhhhcchheecccc-ccccccc--hh-hccchhhheeccCcchhccCCc----cch
Confidence 678899999998888653 23 667889999999998 7764332 21 4466888888886532222222 367
Q ss_pred CCCEEeCCCCCCCChHHH-HHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCCh-hhHHHHHHhCC-
Q 006331 483 SLEMINIAYNERITDTSL-ISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIND-NGMIPLAQYSQ- 559 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~- 559 (650)
.|+.+++++| .+..... . +..+.+++.+.+.+| .+....... .+..+..+++..+ .++. .+... .+
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n-~i~~i~~~~---~~~~l~~~~l~~n-~i~~~~~l~~----~~~ 231 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN-SIREIEGLD---LLKKLVLLSLLDN-KISKLEGLNE----LVM 231 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC-chhcccchH---HHHHHHHhhcccc-cceeccCccc----chh
Confidence 8888888888 4555443 2 466888888888888 433321111 1133333456655 3321 11111 12
Q ss_pred -cCCeEEeecCCCCcHHHHHHhcCCCCCceeee
Q 006331 560 -NLKQINLSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 560 -~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
+|+.++++++++.... ..+..+..+..+++.
T Consensus 232 ~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRSP-EGLENLKNLPVLDLS 263 (414)
T ss_pred HHHHHHhcccCcccccc-ccccccccccccchh
Confidence 3888999999887642 223344444444444
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.86 E-value=0.0019 Score=40.77 Aligned_cols=38 Identities=34% Similarity=0.502 Sum_probs=25.8
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCCh
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~ 445 (650)
++|++|++++|.+.+..+ .+.++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCC-CCCC
Confidence 467888888888776433 4777888888888887 6653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00018 Score=63.91 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc-HHHHHHhcCCC
Q 006331 506 CLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD-VGLIALASINC 584 (650)
Q Consensus 506 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~ 584 (650)
+..|+.+.+.++ .++.. .-+..+++|++|.++.|..--..++..++..+|+|+++.+++|+|.. .....+..+++
T Consensus 42 ~~~le~ls~~n~-gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcc-ceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 455666666666 33331 11235689999999999433345666677778999999999999885 23345567777
Q ss_pred CCceeeecccCCCHHHHHH-HHHhCcccceeeec
Q 006331 585 LQNMTILHVVGLTPNGLVN-ALLRCQGLIKVKLN 617 (650)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~l~l~ 617 (650)
|..|.+.+|+......-.+ .+.-+++|+.|+-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 7788888776544322222 56778999988866
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.00062 Score=57.90 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=14.2
Q ss_pred CCCCEEeCCCCCCCChH-HHHHhhcCCCCcEEEecCC
Q 006331 482 PSLEMINIAYNERITDT-SLISLSECLRLKVLEIRGC 517 (650)
Q Consensus 482 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~ 517 (650)
|+|+.|.+.+|. +... ....+..||+|++|.+-+|
T Consensus 88 p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 88 PNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 444444444442 2211 1223334444444444444
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.76 E-value=0.00066 Score=57.75 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=31.5
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCC
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (650)
.+++|..|.+++|.|+...+.--.-+++|+.|.+.+|....-.++..+.. ||.|++|.+-+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCc
Confidence 45555666666665554333322234555666665554433333444444 5555555555543
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.70 E-value=0.00014 Score=73.57 Aligned_cols=217 Identities=19% Similarity=0.116 Sum_probs=127.5
Q ss_pred hcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCc
Q 006331 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (650)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 456 (650)
..+++|+.+++.++.... .......+++|+.|++++|.+... ..+..++.|+.|++.+| .++...- + ..++
T Consensus 92 ~~~~~l~~l~l~~n~i~~---i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N-~i~~~~~--~-~~l~ 162 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK---IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN-LISDISG--L-ESLK 162 (414)
T ss_pred ccccceeeeeccccchhh---cccchhhhhcchheeccccccccc--cchhhccchhhheeccC-cchhccC--C-ccch
Confidence 356899999998865422 222122789999999999999764 45666777999999999 6664321 1 1368
Q ss_pred cCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChH-HHHHHHhcCC--
Q 006331 457 MLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI-GLSAIAMGCR-- 533 (650)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~-- 533 (650)
.|+.+++++|....-... . ...+.+++.+.+.+|.......... +..+..+.+..| .++.. ++. .+.
T Consensus 163 ~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n-~i~~~~~l~----~~~~~ 232 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDN-KISKLEGLN----ELVML 232 (414)
T ss_pred hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccchHH---HHHHHHhhcccc-cceeccCcc----cchhH
Confidence 899999998653332221 1 3567999999999985222222222 223333355555 33322 111 112
Q ss_pred CccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCH-HHHHHH-HHhCccc
Q 006331 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTP-NGLVNA-LLRCQGL 611 (650)
Q Consensus 534 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-~~~~~~L 611 (650)
.|+.++++++ .+.... .....+..+..+++.++++..... +...+.+..+...+..-... ....+. ....+.+
T Consensus 233 ~L~~l~l~~n-~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (414)
T KOG0531|consen 233 HLRELYLSGN-RISRSP--EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTL 307 (414)
T ss_pred HHHHHhcccC-cccccc--ccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccc
Confidence 3889999999 443321 222446889999999998775421 12223333333332211111 111111 4567777
Q ss_pred ceeeec
Q 006331 612 IKVKLN 617 (650)
Q Consensus 612 ~~l~l~ 617 (650)
..+.+.
T Consensus 308 ~~~~~~ 313 (414)
T KOG0531|consen 308 VTLTLE 313 (414)
T ss_pred cccccc
Confidence 777777
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.63 E-value=0.00019 Score=70.61 Aligned_cols=147 Identities=24% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
.|+.+.+..|. +..++ ..+..+..|+.|+++.|.. .-. ..-. ..--|+.|.+++| .++..+... +..++|.
T Consensus 99 ~Le~liLy~n~-~r~ip-~~i~~L~~lt~l~ls~Nql-S~l--p~~l-C~lpLkvli~sNN-kl~~lp~~i--g~~~tl~ 169 (722)
T KOG0532|consen 99 SLESLILYHNC-IRTIP-EAICNLEALTFLDLSSNQL-SHL--PDGL-CDLPLKVLIVSNN-KLTSLPEEI--GLLPTLA 169 (722)
T ss_pred HHHHHHHHhcc-ceecc-hhhhhhhHHHHhhhccchh-hcC--Chhh-hcCcceeEEEecC-ccccCCccc--ccchhHH
Confidence 45555555444 23333 3455555566666555542 100 0000 0234555555555 333333332 1345556
Q ss_pred eeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhc
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (650)
.|+.+.|.+. ..+..++.+.+|+.|.+..|+...- ++++. .-.|..|+++.|. +. .++..|.++.+|++|.+
T Consensus 170 ~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l--p~El~--~LpLi~lDfScNk-is--~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 170 HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL--PEELC--SLPLIRLDFSCNK-IS--YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC--CHHHh--CCceeeeecccCc-ee--ecchhhhhhhhheeeee
Confidence 6666666554 3455555555566655555433221 22222 2235555555443 22 22344555555555555
Q ss_pred ccCc
Q 006331 286 AYSF 289 (650)
Q Consensus 286 ~~~~ 289 (650)
.+|+
T Consensus 242 enNP 245 (722)
T KOG0532|consen 242 ENNP 245 (722)
T ss_pred ccCC
Confidence 5553
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.53 E-value=0.0054 Score=59.76 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=85.0
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcC-CCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
.+++++.|++++|.+.... .+ ++|+.|.+++|..++.. ...+ .++|+.|.+++|..+.. + .+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~s-----L---P~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEISG-----L---PE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCcccccc-----c---cc
Confidence 5799999999999765432 33 47999999998666422 1222 36899999999876651 1 25
Q ss_pred CCCEEeCCCCCCCChHHHHHhhcC-CCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcC
Q 006331 483 SLEMINIAYNERITDTSLISLSEC-LRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNL 561 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 561 (650)
+|+.|.+..+ .... +..+ ++|+.|.+.++........+..+ .++|++|++++|..+... .....+|
T Consensus 113 sLe~L~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP-----~~LP~SL 179 (426)
T PRK15386 113 SVRSLEIKGS-ATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILP-----EKLPESL 179 (426)
T ss_pred ccceEEeCCC-CCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCc-----ccccccC
Confidence 7888988764 2221 2333 46788887554222111112111 167899999988543211 1234688
Q ss_pred CeEEeecC
Q 006331 562 KQINLSYC 569 (650)
Q Consensus 562 ~~L~l~~~ 569 (650)
+.|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888776
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.35 E-value=0.0021 Score=51.02 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCEEeCCCCCCCC--hHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 483 SLEMINIAYNERIT--DTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 483 ~L~~L~l~~~~~l~--~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
.+..++++.|+ +- ......+.....|+.+++++| .+.+. ...+...++.+..|++++| .+++.... + ..+|.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE-~-Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE-L-AAMPA 101 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchHH-H-hhhHH
Confidence 45555666663 22 122233344555566666665 44332 1222233345555555555 44444433 1 23355
Q ss_pred CCeEEeecCCCCc
Q 006331 561 LKQINLSYCSVTD 573 (650)
Q Consensus 561 L~~L~l~~~~i~~ 573 (650)
|+.|+++.|++..
T Consensus 102 Lr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 102 LRSLNLRFNPLNA 114 (177)
T ss_pred hhhcccccCcccc
Confidence 5555555555443
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.84 E-value=0.004 Score=49.52 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=38.0
Q ss_pred cCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 006331 454 TCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCR 533 (650)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (650)
....|+..++++|. +.+ .-..+...+|.++.|++++| ++.+...+ +..++.|+.|+++.|+- .. .+..+..+.
T Consensus 51 ~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l-~~--~p~vi~~L~ 123 (177)
T KOG4579|consen 51 KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPL-NA--EPRVIAPLI 123 (177)
T ss_pred CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCcc-cc--chHHHHHHH
Confidence 34455555665542 111 01122233455566666665 35444433 55566666666666532 22 122222244
Q ss_pred CccEEecCCC
Q 006331 534 QLAMLDIKKC 543 (650)
Q Consensus 534 ~L~~L~l~~~ 543 (650)
+|-.|+..++
T Consensus 124 ~l~~Lds~~n 133 (177)
T KOG4579|consen 124 KLDMLDSPEN 133 (177)
T ss_pred hHHHhcCCCC
Confidence 4555555554
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.73 E-value=0.012 Score=32.13 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=11.9
Q ss_pred CCccEEecCCCCCCChhhHHHH
Q 006331 533 RQLAMLDIKKCFNINDNGMIPL 554 (650)
Q Consensus 533 ~~L~~L~l~~~~~l~~~~~~~~ 554 (650)
++|+.|+|++|+.++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555555555555555555444
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.57 E-value=0.018 Score=31.45 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=8.2
Q ss_pred ccCcEEeccCCCCCCHHHHH
Q 006331 456 SMLKELDLYRSSGITDVGVV 475 (650)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~ 475 (650)
++|+.|++++|..++|.++.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHH
Confidence 33444444444444444333
No 78
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.87 E-value=0.015 Score=56.02 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 10 ~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
..+..||+|++..|.. +|+...|+.+++.||+.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhccc
Confidence 3578999999999999 998789999999999999987654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.27 E-value=0.021 Score=30.49 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=11.1
Q ss_pred CcCCeEEeecCCCCcHHHHHH
Q 006331 559 QNLKQINLSYCSVTDVGLIAL 579 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~~~~~~~ 579 (650)
++|++|+|++|+|++.+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666666555544
No 80
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.21 E-value=0.022 Score=52.44 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=36.4
Q ss_pred CCCCCCCc----HHHHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 9 SNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 9 ~~~~~~LP----~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
.|.+..|| ++|-+.||+ ||+ ..++.++.+|||+|+++...
T Consensus 72 rDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhcc
Confidence 56788999 999999999 998 99999999999999998654
No 81
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.26 E-value=0.068 Score=49.08 Aligned_cols=38 Identities=26% Similarity=0.518 Sum_probs=31.0
Q ss_pred CCCCCcHHHHHHHHhhccC----CcccccchhhhhhhHHHHHH
Q 006331 11 PFDFLSEEIIFNILDHLNN----DPFARKSFSLTCRNFYSIES 49 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~----~~~~~~~~~~vc~~w~~~~~ 49 (650)
.|..|||||+-.||. ..= +.+++.++++|||.|+..+.
T Consensus 106 ~~~~LPdEvLm~I~~-~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFR-WVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhCCHHHHHHHHH-HHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 478999999999997 432 25788999999999997654
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.88 E-value=0.11 Score=27.71 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=7.2
Q ss_pred CCCcEEEecCCccChhhHH
Q 006331 406 QYLEELDITENEVNDEGLK 424 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~ 424 (650)
++|++|++++|.+++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3444444444444444433
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.18 E-value=0.2 Score=23.99 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=6.8
Q ss_pred CcCCeEEeecCCCC
Q 006331 559 QNLKQINLSYCSVT 572 (650)
Q Consensus 559 ~~L~~L~l~~~~i~ 572 (650)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.70 E-value=0.5 Score=26.26 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=15.2
Q ss_pred CcCCeEEeecCCCCcHHHHHHh
Q 006331 559 QNLKQINLSYCSVTDVGLIALA 580 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~~~~~~~~ 580 (650)
++|+.|+|++|.+.+.+...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4677777777777777666554
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.68 E-value=0.19 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=11.8
Q ss_pred CCceeecCCCCCCcccccccc
Q 006331 203 EIRTLDLSYLPITEKCLPPVV 223 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~ 223 (650)
+|++|++++|.++ ..|+.|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4667777777666 4444443
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.54 E-value=0.069 Score=43.82 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=5.0
Q ss_pred HHHhccCcceeecc
Q 006331 145 AIAEAKNLERLWLA 158 (650)
Q Consensus 145 ~l~~l~~L~~L~l~ 158 (650)
.+..+++|+.+++.
T Consensus 30 ~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 30 AFSNCTSLKSINFP 43 (129)
T ss_dssp TTTT-TT-SEEEES
T ss_pred hccccccccccccc
Confidence 33444444444443
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.80 E-value=0.28 Score=40.14 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=4.2
Q ss_pred ccCCCccEEecC
Q 006331 223 VKLQYLEDLVLE 234 (650)
Q Consensus 223 ~~l~~L~~L~l~ 234 (650)
.++++|+.+.+.
T Consensus 32 ~~~~~l~~i~~~ 43 (129)
T PF13306_consen 32 SNCTSLKSINFP 43 (129)
T ss_dssp TT-TT-SEEEES
T ss_pred cccccccccccc
Confidence 334444444443
No 88
>PF13013 F-box-like_2: F-box-like domain
Probab=87.72 E-value=0.46 Score=36.85 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=26.2
Q ss_pred CCCCCcHHHHHHHHhhccCCcccccchhhhhh
Q 006331 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCR 42 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~ 42 (650)
.+.+||+||+..||+ |.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHH
Confidence 478899999999999 998 788878888887
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.21 E-value=0.94 Score=25.15 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=15.0
Q ss_pred CCccEEecCCCCCCChhhHHHHHH
Q 006331 533 RQLAMLDIKKCFNINDNGMIPLAQ 556 (650)
Q Consensus 533 ~~L~~L~l~~~~~l~~~~~~~~~~ 556 (650)
++|++|+|++| .+++.+...++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 45677777777 666666666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.92 E-value=2.4 Score=42.85 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=20.8
Q ss_pred cCCCCcEEEecCCcCCH-hHHHHHHhhcCCCcEEecCCC
Q 006331 301 NFPMLQSIKFEDCPVAR-SGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 301 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+.|.+..+.+++|.+.. +.+..+....|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45566666666665432 233444445566666666655
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.53 E-value=1.1 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=13.8
Q ss_pred CcCCeEEeecCCCCcHHHHHH
Q 006331 559 QNLKQINLSYCSVTDVGLIAL 579 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~~~~~~~ 579 (650)
++|+.|++++|+|+.+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777776544443
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.53 E-value=1.1 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=13.8
Q ss_pred CcCCeEEeecCCCCcHHHHHH
Q 006331 559 QNLKQINLSYCSVTDVGLIAL 579 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~~~~~~~ 579 (650)
++|+.|++++|+|+.+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777776544443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.57 E-value=3.6 Score=41.70 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=17.6
Q ss_pred cCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCC
Q 006331 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (650)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (650)
..+.+..+.+++|....-..+..+.+..|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334444444444433333334444444455555555554
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.41 E-value=1.1 Score=46.60 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=39.7
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhccc
Q 006331 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKI 54 (650)
Q Consensus 7 ~~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~ 54 (650)
...+.+..||.|+..+||. ||+ .+++..++.||+.|+.+.......
T Consensus 103 ~~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhccchh
Confidence 4467899999999999999 999 899999999999999987665433
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.15 E-value=4.6 Score=21.99 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.2
Q ss_pred CcCCeEEeecCCCCc
Q 006331 559 QNLKQINLSYCSVTD 573 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~ 573 (650)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467888888888764
No 96
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=62.64 E-value=3.6 Score=31.49 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCCCCCcHHHHHHHHhhccCCcccccc
Q 006331 9 SNPFDFLSEEIIFNILDHLNNDPFARKS 36 (650)
Q Consensus 9 ~~~~~~LP~eil~~If~~~L~~~~~~~~ 36 (650)
.+.|..||.||...|++ ||+ -.|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~-~L~-~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILE-YLS-NKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHH-cCC-HHHHHH
Confidence 37899999999999999 998 776654
No 97
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=48.07 E-value=22 Score=32.39 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=33.8
Q ss_pred cCCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHH
Q 006331 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES 49 (650)
Q Consensus 7 ~~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~ 49 (650)
...-.+.+||.|++..|+. ++++.+|+..++.|--....+..
T Consensus 197 ~~~ltl~dLP~e~vl~Il~-rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 197 PAGLTLHDLPLECVLNILL-RLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred cCCCCcccchHHHHHHHHH-HccCcchHHHHHHhhHHHHHHHH
Confidence 3455889999999999999 99999999999887655554443
No 98
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=41.49 E-value=22 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=9.9
Q ss_pred cceeeccCCcCCChHhHHHHHh
Q 006331 152 LERLWLARCKLITDLGIGRIAA 173 (650)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~ 173 (650)
|++|.|....+..+..+..+..
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS 23 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLS 23 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhc
Confidence 4555555544333333444443
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.17 E-value=74 Score=30.46 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcC---CCCcEEEecCCccChhhHHhhh----cCCCCCeeecCCCCCC
Q 006331 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC---QYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI 443 (650)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~i 443 (650)
.+..+-..-+.++..++.+...++...+..+...+ ...+...+.+....+....++. -+..|++|++.+| .|
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-FI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-FI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-cc
Confidence 33444444456666666665555555444444322 3344444545444443333222 3667777777777 77
Q ss_pred ChhhHHHHHhc
Q 006331 444 TDEGLKHVGST 454 (650)
Q Consensus 444 ~~~~~~~l~~~ 454 (650)
+..++..+...
T Consensus 268 tg~gi~a~~~a 278 (353)
T KOG3735|consen 268 TGLGIMALLRA 278 (353)
T ss_pred ccHHHHHHHHH
Confidence 76666655533
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=35.56 E-value=23 Score=19.30 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=10.7
Q ss_pred CcCCeEEeecCCCCc
Q 006331 559 QNLKQINLSYCSVTD 573 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~ 573 (650)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 467777777777654
No 101
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=30.74 E-value=1.2e+02 Score=29.18 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred hhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhc---CCCCCEEeCCCCCCCChHHHHHh----hcCCCCcEEEecCCC
Q 006331 446 EGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHG---CPSLEMINIAYNERITDTSLISL----SECLRLKVLEIRGCP 518 (650)
Q Consensus 446 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~ 518 (650)
..+..+-..-++++...+.....++...+..+... -+..+.+.+.+- ...+....++ ..+..|++|++.+|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn- 265 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN- 265 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc-
Confidence 34444545566777777766666665444433332 234444444442 2333222222 23556666666666
Q ss_pred CCChHHHHHHH
Q 006331 519 RISAIGLSAIA 529 (650)
Q Consensus 519 ~l~~~~~~~~~ 529 (650)
.|++.++..++
T Consensus 266 FItg~gi~a~~ 276 (353)
T KOG3735|consen 266 FITGLGIMALL 276 (353)
T ss_pred ccccHHHHHHH
Confidence 66665555544
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.42 E-value=1.5e+02 Score=30.19 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=7.4
Q ss_pred CCCcEEEecCCccCh
Q 006331 406 QYLEELDITENEVND 420 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~ 420 (650)
+.+.+|+++++...+
T Consensus 440 qtl~kldisgn~mgd 454 (553)
T KOG4242|consen 440 QTLAKLDISGNGMGD 454 (553)
T ss_pred cccccccccCCCccc
Confidence 445555555544443
No 103
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=21.74 E-value=6.1 Score=35.30 Aligned_cols=89 Identities=15% Similarity=-0.005 Sum_probs=44.5
Q ss_pred HHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccccccc
Q 006331 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (650)
Q Consensus 143 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (650)
...+..+...+.|+++.+..+. +..-.+.+..+..|+++.+ .+...+-++ +....++.++...|..+ ..|.++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn---~~~n~s~~t~~~rl~~skn-q~~~~~~d~--~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVN---LGKNFSILTRLVRLDLSKN-QIKFLPKDA--KQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred hhhhhccceeeeehhhhhHHHh---hccchHHHHHHHHHhccHh-hHhhChhhH--HHHHHHHHHHhhccchh-hCCccc
Confidence 3444445555555555443211 1111111344555555544 222222222 23445556666665554 567777
Q ss_pred ccCCCccEEecCCCCC
Q 006331 223 VKLQYLEDLVLEGCHG 238 (650)
Q Consensus 223 ~~l~~L~~L~l~~~~~ 238 (650)
+..++++.++..+++.
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 7888888888877653
Done!