Query 006331
Match_columns 650
No_of_seqs 390 out of 3819
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 22:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.6E-42 5.6E-47 370.1 44.5 506 10-586 4-534 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.3E-42 8E-47 368.6 37.2 547 1-623 1-577 (592)
3 3rgz_A Protein brassinosteroid 100.0 4.1E-42 1.4E-46 374.8 0.1 568 40-642 38-719 (768)
4 3rgz_A Protein brassinosteroid 100.0 8.6E-41 3E-45 364.4 -1.6 474 123-627 176-723 (768)
5 2p1m_B Transport inhibitor res 100.0 1.5E-33 5.3E-38 300.8 36.5 413 168-617 97-539 (594)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-37 6.3E-42 335.9 3.2 534 65-627 43-602 (680)
7 3t6q_A CD180 antigen; protein- 100.0 2.5E-36 8.7E-41 322.6 4.6 517 72-625 34-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.1E-36 3.9E-41 325.3 0.5 498 64-594 50-558 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 3E-36 1E-40 326.4 0.1 541 71-641 25-598 (680)
10 3ogk_B Coronatine-insensitive 100.0 4.9E-32 1.7E-36 288.9 31.9 450 143-617 66-546 (592)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-36 1.2E-40 321.4 -1.7 513 71-625 32-562 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-35 9.6E-40 314.5 -0.5 495 64-594 49-556 (606)
13 1z7x_W Ribonuclease inhibitor; 100.0 5E-29 1.7E-33 257.0 39.8 394 125-575 3-443 (461)
14 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-29 1.1E-33 258.4 34.5 406 176-614 3-460 (461)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-32 1.6E-36 286.1 10.1 465 98-593 25-507 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-31 8.9E-36 280.4 14.0 468 71-574 26-512 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 1.9E-33 6.6E-38 298.4 -6.6 490 99-626 28-536 (570)
18 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-33 8.3E-38 308.9 -10.7 495 97-626 22-544 (844)
19 2z63_A TOLL-like receptor 4, v 100.0 3.2E-32 1.1E-36 289.1 -2.3 480 125-639 28-530 (570)
20 3j0a_A TOLL-like receptor 5; m 100.0 8E-33 2.7E-37 304.9 -10.4 488 123-642 22-541 (844)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-30 1E-34 270.1 5.8 459 74-572 3-481 (520)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-30 2.5E-34 267.2 8.1 456 102-594 3-479 (520)
23 2ast_B S-phase kinase-associat 100.0 1.6E-27 5.5E-32 234.6 19.5 293 8-338 5-303 (336)
24 4eco_A Uncharacterized protein 99.9 2.2E-30 7.6E-35 275.6 -7.3 351 199-574 203-602 (636)
25 4eco_A Uncharacterized protein 99.9 1.8E-30 6E-35 276.4 -8.9 315 295-626 239-583 (636)
26 4ecn_A Leucine-rich repeat pro 99.9 5.1E-29 1.7E-33 268.8 -1.6 356 199-580 445-848 (876)
27 4ecn_A Leucine-rich repeat pro 99.9 1E-28 3.5E-33 266.5 -0.3 415 202-639 323-839 (876)
28 1o6v_A Internalin A; bacterial 99.9 4.3E-25 1.5E-29 226.8 23.1 340 175-592 45-384 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.9E-28 2E-32 254.5 0.3 462 72-572 32-510 (562)
30 1o6v_A Internalin A; bacterial 99.9 7E-25 2.4E-29 225.2 21.9 347 147-573 43-389 (466)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-26 5E-31 244.0 5.6 466 123-625 29-514 (562)
32 3v47_A TOLL-like receptor 5B a 99.9 1.7E-26 5.9E-31 237.4 5.5 133 202-338 30-164 (455)
33 4fmz_A Internalin; leucine ric 99.9 3E-24 1E-28 212.1 21.0 305 200-572 42-346 (347)
34 3v47_A TOLL-like receptor 5B a 99.9 4.4E-26 1.5E-30 234.4 4.6 108 405-517 274-381 (455)
35 4fmz_A Internalin; leucine ric 99.9 2.6E-23 8.9E-28 205.4 23.9 301 175-543 43-343 (347)
36 4g8a_A TOLL-like receptor 4; l 99.9 6.7E-27 2.3E-31 252.0 -3.8 486 72-592 53-576 (635)
37 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-25 3.7E-30 242.5 2.2 493 98-617 51-575 (635)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-24 8.5E-29 218.8 10.8 343 175-628 41-394 (457)
39 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-24 1.4E-28 217.2 10.1 287 200-575 104-390 (457)
40 3o6n_A APL1; leucine-rich repe 99.9 5.5E-23 1.9E-27 206.3 12.3 241 176-444 45-285 (390)
41 1jl5_A Outer protein YOPM; leu 99.9 5.1E-24 1.8E-28 216.3 1.8 409 125-639 11-428 (454)
42 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.3E-28 212.8 5.0 383 176-641 11-410 (454)
43 3o6n_A APL1; leucine-rich repe 99.9 9.5E-23 3.2E-27 204.5 7.7 316 200-578 43-358 (390)
44 3oja_B Anopheles plasmodium-re 99.9 3E-22 1E-26 212.0 11.4 316 176-529 51-366 (597)
45 2ast_B S-phase kinase-associat 99.9 5.3E-20 1.8E-24 180.8 26.0 260 304-577 48-311 (336)
46 2id5_A Lingo-1, leucine rich r 99.9 8.2E-23 2.8E-27 211.1 3.9 155 176-338 32-186 (477)
47 2id5_A Lingo-1, leucine rich r 99.9 2E-23 6.7E-28 215.7 -1.8 303 251-572 31-333 (477)
48 3oja_B Anopheles plasmodium-re 99.8 1E-21 3.6E-26 207.9 9.0 286 200-517 49-334 (597)
49 2ca6_A RAN GTPase-activating p 99.8 1.3E-18 4.6E-23 173.9 27.4 199 295-498 24-259 (386)
50 2ca6_A RAN GTPase-activating p 99.8 3.9E-19 1.3E-23 177.8 22.9 38 326-364 30-70 (386)
51 1xku_A Decorin; proteoglycan, 99.8 1.3E-19 4.6E-24 177.1 6.2 247 177-498 32-278 (330)
52 1xku_A Decorin; proteoglycan, 99.8 3E-20 1E-24 181.7 0.1 275 125-440 52-329 (330)
53 3goz_A Leucine-rich repeat-con 99.8 1.7E-17 5.9E-22 164.0 19.7 254 333-595 3-293 (362)
54 3goz_A Leucine-rich repeat-con 99.8 5.7E-17 1.9E-21 160.3 22.0 256 290-575 9-300 (362)
55 2ft3_A Biglycan; proteoglycan, 99.7 3.4E-20 1.2E-24 181.4 -2.6 269 125-440 54-330 (332)
56 2ft3_A Biglycan; proteoglycan, 99.7 2.5E-20 8.7E-25 182.3 -4.9 287 253-592 34-329 (332)
57 3o53_A Protein LRIM1, AGAP0063 99.7 3E-19 1E-23 173.1 2.2 126 380-517 99-224 (317)
58 1ogq_A PGIP-2, polygalacturona 99.7 3.7E-20 1.3E-24 178.9 -6.1 226 202-440 50-278 (313)
59 2z80_A TOLL-like receptor 2, v 99.7 1.2E-17 4.1E-22 164.8 8.0 232 201-440 75-311 (353)
60 2z80_A TOLL-like receptor 2, v 99.7 5.9E-18 2E-22 167.0 5.4 261 125-421 52-316 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-18 3.8E-23 169.0 -2.2 238 326-591 32-270 (317)
62 1ogq_A PGIP-2, polygalacturona 99.7 5E-19 1.7E-23 170.9 -5.6 252 150-443 50-304 (313)
63 2z66_A Variable lymphocyte rec 99.7 5.9E-19 2E-23 170.5 -6.8 37 404-440 124-160 (306)
64 3zyi_A Leucine-rich repeat-con 99.7 1.2E-17 4.1E-22 170.7 2.0 227 125-365 75-301 (452)
65 3zyj_A Leucine-rich repeat-con 99.7 1E-17 3.5E-22 170.5 1.4 227 125-365 64-290 (440)
66 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5.2E-23 167.7 -5.3 185 378-573 119-310 (312)
67 1wwl_A Monocyte differentiatio 99.6 2.1E-18 7.3E-23 166.7 -4.8 201 378-591 93-304 (312)
68 2z66_A Variable lymphocyte rec 99.6 1.9E-18 6.4E-23 167.0 -5.5 134 200-338 99-233 (306)
69 1ozn_A Reticulon 4 receptor; N 99.6 6.1E-17 2.1E-21 154.5 4.9 204 126-339 33-236 (285)
70 3g06_A SSPH2 (leucine-rich rep 99.6 3.9E-16 1.3E-20 163.1 11.4 229 302-583 80-308 (622)
71 4fcg_A Uncharacterized protein 99.6 3.8E-17 1.3E-21 158.6 3.5 232 175-440 80-311 (328)
72 4fcg_A Uncharacterized protein 99.6 1.3E-17 4.4E-22 161.9 -0.6 63 274-338 225-287 (328)
73 3g06_A SSPH2 (leucine-rich rep 99.6 1E-15 3.5E-20 160.0 12.8 254 279-593 41-294 (622)
74 3oja_A Leucine-rich immune mol 99.6 4.7E-17 1.6E-21 166.9 2.5 239 276-567 32-270 (487)
75 1ozn_A Reticulon 4 receptor; N 99.6 9.6E-17 3.3E-21 153.1 4.3 182 404-593 54-235 (285)
76 3zyi_A Leucine-rich repeat-con 99.6 3.8E-16 1.3E-20 159.5 5.0 84 176-263 75-158 (452)
77 3zyj_A Leucine-rich repeat-con 99.6 3.9E-16 1.3E-20 158.8 4.7 61 404-466 229-289 (440)
78 1h6u_A Internalin H; cell adhe 99.6 6.6E-15 2.3E-19 141.5 12.6 192 352-572 39-230 (308)
79 4glp_A Monocyte differentiatio 99.6 8.3E-16 2.8E-20 148.4 5.5 232 303-573 64-308 (310)
80 3oja_A Leucine-rich immune mol 99.6 2.5E-16 8.6E-21 161.5 2.0 237 175-463 33-269 (487)
81 1h6u_A Internalin H; cell adhe 99.6 5.7E-15 1.9E-19 142.0 11.0 188 379-593 40-227 (308)
82 3un9_A NLR family member X1; l 99.6 2.6E-14 8.8E-19 140.3 15.5 176 406-586 72-266 (372)
83 3rfs_A Internalin B, repeat mo 99.6 9E-16 3.1E-20 145.0 3.1 201 406-628 41-242 (272)
84 2z62_A TOLL-like receptor 4, v 99.5 7.2E-16 2.5E-20 146.3 -0.7 201 380-591 28-232 (276)
85 4glp_A Monocyte differentiatio 99.5 2.4E-15 8.3E-20 145.1 1.8 176 404-591 115-302 (310)
86 3rfs_A Internalin B, repeat mo 99.5 2.5E-15 8.5E-20 141.9 0.4 157 404-576 83-239 (272)
87 2o6q_A Variable lymphocyte rec 99.5 9.4E-15 3.2E-19 137.9 2.5 177 407-592 38-214 (270)
88 2z62_A TOLL-like receptor 4, v 99.5 6E-15 2.1E-19 139.9 0.9 131 99-236 28-159 (276)
89 3un9_A NLR family member X1; l 99.4 1.8E-12 6.1E-17 127.2 17.1 189 380-574 72-285 (372)
90 1h6t_A Internalin B; cell adhe 99.4 3.4E-13 1.2E-17 128.3 11.4 170 379-573 45-214 (291)
91 4ezg_A Putative uncharacterize 99.4 1.8E-13 6.2E-18 122.1 8.0 154 404-573 42-195 (197)
92 1h6t_A Internalin B; cell adhe 99.4 4.4E-13 1.5E-17 127.5 10.8 166 405-593 45-210 (291)
93 1p9a_G Platelet glycoprotein I 99.4 3.8E-14 1.3E-18 134.7 2.3 173 406-591 31-203 (290)
94 2o6q_A Variable lymphocyte rec 99.4 4.7E-14 1.6E-18 133.0 2.5 37 200-236 107-143 (270)
95 2xwt_C Thyrotropin receptor; s 99.4 6.2E-15 2.1E-19 136.4 -3.6 200 126-338 32-236 (239)
96 2xwt_C Thyrotropin receptor; s 99.4 9.9E-15 3.4E-19 135.0 -3.7 175 404-591 53-234 (239)
97 1p9a_G Platelet glycoprotein I 99.4 2.6E-13 9E-18 128.9 4.1 84 175-263 76-159 (290)
98 3e4g_A ATP synthase subunit S, 99.3 1.8E-12 6.1E-17 109.5 7.8 91 431-523 62-155 (176)
99 1m9s_A Internalin B; cell inva 99.3 3.6E-13 1.2E-17 140.7 4.2 149 404-573 63-211 (605)
100 4ezg_A Putative uncharacterize 99.3 1.5E-12 5.1E-17 116.1 7.6 106 404-517 86-191 (197)
101 1m9s_A Internalin B; cell inva 99.3 1.4E-12 4.9E-17 136.2 8.5 167 404-593 41-207 (605)
102 3m19_A Variable lymphocyte rec 99.3 8.4E-13 2.9E-17 122.9 3.4 157 407-572 36-192 (251)
103 3e4g_A ATP synthase subunit S, 99.3 9.2E-12 3.2E-16 105.1 9.0 104 406-510 61-170 (176)
104 3m19_A Variable lymphocyte rec 99.3 5.3E-13 1.8E-17 124.3 1.4 176 406-593 14-189 (251)
105 2je0_A Acidic leucine-rich nuc 99.2 3.1E-12 1.1E-16 108.3 3.3 105 480-590 40-147 (149)
106 1xeu_A Internalin C; cellular 99.2 1.3E-11 4.5E-16 115.3 6.8 147 405-573 40-186 (263)
107 1xeu_A Internalin C; cellular 99.2 3.2E-12 1.1E-16 119.5 2.2 164 406-593 19-182 (263)
108 2o6s_A Variable lymphocyte rec 99.2 1.3E-12 4.5E-17 117.8 -1.4 161 406-582 28-188 (208)
109 2ell_A Acidic leucine-rich nuc 99.1 4.9E-12 1.7E-16 109.6 0.1 87 481-573 48-134 (168)
110 2je0_A Acidic leucine-rich nuc 99.1 8.9E-11 3E-15 99.3 7.7 129 405-541 16-148 (149)
111 4ay9_X Follicle-stimulating ho 99.1 4.8E-13 1.6E-17 131.3 -7.5 225 125-362 30-254 (350)
112 3sb4_A Hypothetical leucine ri 99.1 4.9E-12 1.7E-16 123.0 -0.4 37 327-365 24-60 (329)
113 2o6s_A Variable lymphocyte rec 99.1 1E-11 3.5E-16 111.9 1.1 115 175-303 75-189 (208)
114 3sb4_A Hypothetical leucine ri 99.1 2.8E-11 9.7E-16 117.5 4.1 35 201-236 100-134 (329)
115 1dce_A Protein (RAB geranylger 99.1 2.2E-11 7.4E-16 126.5 2.6 199 123-334 347-566 (567)
116 2ell_A Acidic leucine-rich nuc 99.1 2.9E-11 9.8E-16 104.7 2.4 107 404-517 22-130 (168)
117 3cvr_A Invasion plasmid antige 99.1 1.6E-11 5.4E-16 126.7 0.9 179 379-593 58-240 (571)
118 2ra8_A Uncharacterized protein 99.1 2.8E-10 9.5E-15 110.5 9.5 158 404-570 170-341 (362)
119 1dce_A Protein (RAB geranylger 99.1 2.6E-12 8.8E-17 133.4 -5.9 125 482-616 441-567 (567)
120 3cvr_A Invasion plasmid antige 99.0 1.2E-10 4.1E-15 120.2 5.5 149 405-583 99-254 (571)
121 4ay9_X Follicle-stimulating ho 99.0 2.3E-12 7.9E-17 126.4 -7.3 226 71-312 30-255 (350)
122 2xot_A Amphoterin-induced prot 99.0 4.5E-11 1.5E-15 117.7 1.8 158 406-572 39-202 (361)
123 2xot_A Amphoterin-induced prot 99.0 7.4E-11 2.5E-15 116.1 3.0 159 379-545 38-201 (361)
124 2v9t_B SLIT homolog 2 protein 99.0 8.8E-11 3E-15 106.4 2.8 131 202-338 32-162 (220)
125 1io0_A Tropomodulin; LRR prote 99.0 1E-08 3.4E-13 89.7 15.4 123 450-575 30-167 (185)
126 2v9t_B SLIT homolog 2 protein 99.0 1E-10 3.6E-15 105.9 2.8 131 406-543 32-162 (220)
127 2v70_A SLIT-2, SLIT homolog 2 99.0 2E-10 6.8E-15 104.0 4.3 136 98-239 31-166 (220)
128 2ra8_A Uncharacterized protein 99.0 3.4E-09 1.2E-13 102.9 12.5 83 326-414 137-227 (362)
129 2v70_A SLIT-2, SLIT homolog 2 99.0 1.7E-10 5.9E-15 104.4 3.2 62 275-338 102-163 (220)
130 1a9n_A U2A', U2A'; complex (nu 98.9 2.7E-10 9.4E-15 99.2 3.4 107 428-543 17-123 (176)
131 3e6j_A Variable lymphocyte rec 98.9 6.4E-10 2.2E-14 101.5 4.5 109 202-316 40-148 (229)
132 1a9n_A U2A', U2A'; complex (nu 98.9 5.6E-10 1.9E-14 97.3 3.6 130 404-543 17-150 (176)
133 1io0_A Tropomodulin; LRR prote 98.9 4.5E-08 1.5E-12 85.5 14.1 120 472-593 26-161 (185)
134 3e6j_A Variable lymphocyte rec 98.8 1.6E-09 5.6E-14 98.7 4.9 110 201-316 63-172 (229)
135 1ds9_A Outer arm dynein; leuci 98.8 8.8E-11 3E-15 104.7 -3.9 34 405-440 47-80 (198)
136 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3E-09 1E-13 70.5 3.3 41 8-50 5-45 (53)
137 1ds9_A Outer arm dynein; leuci 98.7 1.5E-09 5.2E-14 96.6 -0.2 123 480-615 46-180 (198)
138 4fs7_A Uncharacterized protein 98.6 4.5E-10 1.5E-14 112.1 -7.1 53 480-538 341-393 (394)
139 1w8a_A SLIT protein; signaling 98.6 1.1E-08 3.8E-13 90.3 2.7 109 203-316 30-139 (192)
140 1w8a_A SLIT protein; signaling 98.6 2E-08 6.7E-13 88.7 2.8 126 205-339 11-137 (192)
141 4b8c_D Glucose-repressible alc 98.5 2.9E-09 1E-13 114.3 -3.9 36 404-440 222-257 (727)
142 2wfh_A SLIT homolog 2 protein 98.5 4.2E-08 1.4E-12 86.5 4.1 108 126-239 32-139 (193)
143 2wfh_A SLIT homolog 2 protein 98.5 3.6E-08 1.2E-12 86.9 2.9 108 456-571 31-138 (193)
144 2o6r_A Variable lymphocyte rec 98.5 7.1E-08 2.4E-12 83.9 4.7 111 201-316 27-137 (177)
145 4b8c_D Glucose-repressible alc 98.5 3.7E-08 1.3E-12 105.8 3.2 139 423-573 217-355 (727)
146 4fs7_A Uncharacterized protein 98.5 4.4E-09 1.5E-13 104.9 -4.1 218 220-465 156-375 (394)
147 2o6r_A Variable lymphocyte rec 98.5 9.1E-08 3.1E-12 83.3 4.1 111 125-240 28-138 (177)
148 1pgv_A TMD-1, tropomodulin TMD 98.4 3.9E-06 1.3E-10 72.3 13.7 120 449-570 34-168 (197)
149 4fdw_A Leucine rich hypothetic 98.4 4E-09 1.4E-13 104.4 -6.2 172 404-592 178-354 (401)
150 4fdw_A Leucine rich hypothetic 98.4 2.7E-08 9.3E-13 98.5 -1.5 198 407-625 158-361 (401)
151 1pgv_A TMD-1, tropomodulin TMD 98.3 1.9E-05 6.4E-10 68.1 13.9 94 371-465 32-135 (197)
152 3g39_A Variable lymphocyte rec 98.1 9.1E-07 3.1E-11 76.1 1.4 62 175-238 53-114 (170)
153 3g39_A Variable lymphocyte rec 98.0 3.1E-06 1.1E-10 72.7 4.4 55 178-237 11-65 (170)
154 4gt6_A Cell surface protein; l 98.0 7.7E-07 2.6E-11 88.6 0.6 59 480-543 309-367 (394)
155 2r9u_A Variable lymphocyte rec 98.0 1.4E-06 4.7E-11 75.2 1.4 62 175-238 56-117 (174)
156 2r9u_A Variable lymphocyte rec 98.0 5E-06 1.7E-10 71.6 4.3 53 179-236 15-67 (174)
157 4gt6_A Cell surface protein; l 97.9 9.6E-07 3.3E-11 87.9 -1.8 323 123-492 61-388 (394)
158 2e31_A FBS1, F-box only protei 97.6 2.5E-05 8.4E-10 71.7 3.1 41 9-51 48-89 (297)
159 2ifg_A High affinity nerve gro 97.5 5.9E-05 2E-09 73.5 4.8 105 130-241 13-118 (347)
160 3l2o_B F-box only protein 4; s 97.4 2.6E-05 9E-10 70.4 0.7 39 11-51 4-42 (312)
161 2ifg_A High affinity nerve gro 97.4 6E-05 2.1E-09 73.5 3.4 61 200-262 29-90 (347)
162 3rw6_A Nuclear RNA export fact 97.4 0.00031 1E-08 64.3 7.5 12 481-492 169-180 (267)
163 3rw6_A Nuclear RNA export fact 97.3 0.00059 2E-08 62.4 7.9 17 404-420 194-210 (267)
164 4h09_A Hypothetical leucine ri 97.0 5.4E-05 1.8E-09 74.8 -2.0 103 480-590 238-340 (379)
165 3v7d_B Cell division control p 96.9 0.00015 5E-09 74.0 0.3 43 6-50 9-51 (464)
166 4h09_A Hypothetical leucine ri 96.7 0.00012 3.9E-09 72.4 -2.3 58 480-541 284-341 (379)
167 2ovr_B FBW7, F-BOX/WD repeat p 96.7 0.00063 2.2E-08 68.8 2.9 44 5-50 12-55 (445)
168 1p22_A F-BOX/WD-repeat protein 96.6 0.00038 1.3E-08 70.2 0.5 44 5-50 4-51 (435)
169 3rfe_A Platelet glycoprotein I 85.8 1.2 4.1E-05 35.3 5.3 41 201-241 30-70 (130)
170 3rfe_A Platelet glycoprotein I 82.2 1.3 4.4E-05 35.1 4.0 38 406-443 31-68 (130)
171 2lz0_A Uncharacterized protein 32.4 8.7 0.0003 28.5 -0.2 16 424-439 14-29 (100)
172 2lz0_A Uncharacterized protein 29.7 13 0.00043 27.6 0.3 35 480-516 18-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.6e-42 Score=370.14 Aligned_cols=506 Identities=21% Similarity=0.291 Sum_probs=289.4
Q ss_pred CCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhcccccccch--hhHHHHHhcCCCceEeccCCCCCCCch
Q 006331 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA--ETLSRTSARYPFITQLDLSLCPRANDD 87 (650)
Q Consensus 10 ~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~ 87 (650)
+.|+.||+||+.+||+ ||++.+|+.++++|||+|+++....+..+.+..+ ......+.+|++|+.|+++++..+.+.
T Consensus 4 d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp ------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred cchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 7899999999999999 9987899999999999999996666665555544 224567788888999988887644322
Q ss_pred hhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHh
Q 006331 88 ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLG 167 (650)
Q Consensus 88 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 167 (650)
.. . ... .. ......+..+...+++|++|++++|. +++..
T Consensus 83 ~l--~-~~~---------~~---~~~~~~l~~l~~~~~~L~~L~L~~~~--------------------------~~~~~ 121 (594)
T 2p1m_B 83 NL--V-PDG---------WG---GYVYPWIEAMSSSYTWLEEIRLKRMV--------------------------VTDDC 121 (594)
T ss_dssp TC--S-CTT---------SC---CBCHHHHHHHHHHCTTCCEEEEESCB--------------------------CCHHH
T ss_pred cc--c-ccc---------cc---chhhHHHHHHHHhCCCCCeEEeeCcE--------------------------EcHHH
Confidence 11 0 000 00 11223344444456666666666554 33333
Q ss_pred HHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccc----cCCCccEEecCCCC-CCChh
Q 006331 168 IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV----KLQYLEDLVLEGCH-GIDDD 242 (650)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~-~~~~~ 242 (650)
+..+...+++|++|++++|..++..+...+...+++|++|++++|.+++..+..+. .+++|++|++++|. .+...
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence 44444345566666666554444444444444566666666666655544433333 46688888888775 45555
Q ss_pred HHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcC-C----chhHHHHhhcCCCCcEE-EecCCcCC
Q 006331 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFW-V----SADLSKCLHNFPMLQSI-KFEDCPVA 316 (650)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~----~~~~~~~l~~l~~L~~L-~l~~~~~~ 316 (650)
.+..+...+++|++|++++|.. ...++..+..+++|++|.+.++.. + ....+..+..+++|+.| .+.+. .
T Consensus 202 ~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~--~ 277 (594)
T 2p1m_B 202 ALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA--V 277 (594)
T ss_dssp HHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC--C
T ss_pred HHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc--c
Confidence 5666655588888888888742 333666677777777777665421 1 01233345555666655 22221 1
Q ss_pred HhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHH
Q 006331 317 RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE 396 (650)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 396 (650)
...+..+...+++|++|++++|. +.+..+...+..+++|++|++.+| +.+..+..+...+++|+.|++.+|....
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g-- 352 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFV-- 352 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTC--
T ss_pred hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccc--
Confidence 11122222244555555555554 444444444445555555555544 2333344444444455555442110000
Q ss_pred HHHHHhhcCCCCcEEEecCCccChhhHHhhhc-CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEecc-----CCCCCC
Q 006331 397 AFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY-----RSSGIT 470 (650)
Q Consensus 397 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~-----~~~~~~ 470 (650)
....+.+++.+...+.. +++|+.|.+..+ .+++.++..+...+++|+.|+++ +|..++
T Consensus 353 ---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 353 ---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp ---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred ---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 00113444444444432 555665544434 55555555555556666666666 455565
Q ss_pred ----HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhc-CCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCC
Q 006331 471 ----DVGVVAVSHGCPSLEMINIAYNERITDTSLISLSE-CLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFN 545 (650)
Q Consensus 471 ----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 545 (650)
+.++..+...+++|++|++++ .+++.....+.. +++|+.|++++| .+++.++..+...+++|++|++++| .
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~ 492 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-P 492 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-S
T ss_pred CCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-C
Confidence 566666666677777777755 466666666665 777777777777 5666666666666777777777777 4
Q ss_pred CChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHH-hcCCCCC
Q 006331 546 INDNGMIPLAQYSQNLKQINLSYCSVTDVGLIAL-ASINCLQ 586 (650)
Q Consensus 546 l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~ 586 (650)
+++.+...+...+++|+.|++++|+++..+...+ ..+|.++
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 4666665555556777777777777766666655 3455553
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.3e-42 Score=368.61 Aligned_cols=547 Identities=20% Similarity=0.264 Sum_probs=317.8
Q ss_pred Ccccc-ccCCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhcccccccch--hhHHHHHhcCCCceEec
Q 006331 1 MEAKR-KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA--ETLSRTSARYPFITQLD 77 (650)
Q Consensus 1 ~~~~~-~~~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~l~~~~~~~~~L~~L~ 77 (650)
|+... ++.......||||||.+||+ ||++.+|+.++++|||+|+++....+..+.+..+ ..++..+++++++++|+
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp -----------CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEE
Confidence 44432 23344456899999999999 9933999999999999999998777766665543 34677889999999999
Q ss_pred cCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHh-ccC-ccee
Q 006331 78 LSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKN-LERL 155 (650)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~-L~~L 155 (650)
+++++.+.+... + .. .........+..+...+++|++|++++|. +++.....+.. +++ |++|
T Consensus 80 L~~~~~~~~~~~--~-~~------------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 80 LKGKPRAAMFNL--I-PE------------NWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp EECSCGGGGGTC--S-CT------------TSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEE
T ss_pred ecCCcchhhccc--c-cc------------cccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEE
Confidence 999875443211 1 00 11124455667777789999999999885 66655556655 444 8888
Q ss_pred eccCCcCCChHhHHHHHhhCCCCceeecccccccchHH---HHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEe
Q 006331 156 WLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLG---VELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLV 232 (650)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 232 (650)
++++|..+.+..+..+...+++|++|++++|. +...+ ...+...+++|++|+++++.+++.
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--------------- 207 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--------------- 207 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSC---------------
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCcc---------------
Confidence 88888766666677777678888888888874 22221 222334677777777777665421
Q ss_pred cCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCC--chhHHHHhhcCCCCcEEEe
Q 006331 233 LEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV--SADLSKCLHNFPMLQSIKF 310 (650)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~l~~L~~L~l 310 (650)
....+..+...+++|++|++++|. +. .++..+..+++|++|++.+.... ....+..+..+++|+.|.+
T Consensus 208 -------~~~~l~~~~~~~~~L~~L~L~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (592)
T 3ogk_B 208 -------SPKDLETIARNCRSLVSVKVGDFE-IL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277 (592)
T ss_dssp -------CHHHHHHHHHHCTTCCEEECSSCB-GG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE
T ss_pred -------CHHHHHHHHhhCCCCcEEeccCcc-HH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc
Confidence 112222222234455555554432 11 12333444444444444422111 0122233445566777766
Q ss_pred cCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCC-
Q 006331 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC- 389 (650)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~- 389 (650)
.++.. ..+..+...+++|++|++++|. +.+..+...+..+++|+.|++.+ .+.+..+..+...+++|++|++++
T Consensus 278 ~~~~~--~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 278 SYMGP--NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp TTCCT--TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cccch--hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecC
Confidence 65421 1122223356677777777665 55555555566667777776662 244555555555566666666663
Q ss_pred ---------CccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhc-CCCCCeeecCCCCCCChhhHHHHHhcCccCc
Q 006331 390 ---------CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (650)
Q Consensus 390 ---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 459 (650)
|..+++.++..+...+++|++|+++.+.+++..+..+.. +++|++|+++++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------ 414 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD------------------ 414 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS------------------
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC------------------
Confidence 555555555555445555665555545555544444443 4445555444210
Q ss_pred EEeccCCCCCCH----HHHHHHHhcCCCCCEEeCCCCC-CCChHHHHHhhc-CCCCcEEEecCCCCCChHHHHHHHhcCC
Q 006331 460 ELDLYRSSGITD----VGVVAVSHGCPSLEMINIAYNE-RITDTSLISLSE-CLRLKVLEIRGCPRISAIGLSAIAMGCR 533 (650)
Q Consensus 460 ~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (650)
.|+.+++ .++..+..++++|++|++++|. .+++.....+.. +++|++|++++| .+++.+++.++.+++
T Consensus 415 -----~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 415 -----REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCP 488 (592)
T ss_dssp -----CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCT
T ss_pred -----CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCc
Confidence 1333442 3566666667777777776553 256666666654 777777777777 577766777777777
Q ss_pred CccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHh-cCCCCCceeeecccCCCHHHH--HHHHHhCcc
Q 006331 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALA-SINCLQNMTILHVVGLTPNGL--VNALLRCQG 610 (650)
Q Consensus 534 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~ 610 (650)
+|++|+|++|+ +++.+...+...+++|+.|++++|++++.+...++ .+|.+ .+..+........ .+.-.....
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l---~~~~~~~~~~~~~~~~~~~~~~~~ 564 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW---NIELIPSRRVPEVNQQGEIREMEH 564 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE---EEEEECCC---------------C
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc---EEEEecCccccccccccCCcCCcc
Confidence 88888888884 77766666666777888888888887776555443 33443 3332222111110 011124566
Q ss_pred cceeeeccccccC
Q 006331 611 LIKVKLNASFRPL 623 (650)
Q Consensus 611 L~~l~l~~~~~~~ 623 (650)
..++...+.+.|.
T Consensus 565 ~~~~~~~~~~~g~ 577 (592)
T 3ogk_B 565 PAHILAYYSLAGQ 577 (592)
T ss_dssp CCEEEEEECTTCS
T ss_pred hhheEeeeecCCC
Confidence 7777777555553
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-42 Score=374.79 Aligned_cols=568 Identities=19% Similarity=0.165 Sum_probs=344.1
Q ss_pred hhhhHHHHHHhhcccccccch------h---hHHHHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCc
Q 006331 40 TCRNFYSIESRHRKILKPLCA------E---TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSR 110 (650)
Q Consensus 40 vc~~w~~~~~~~~~~~~~~~~------~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 110 (650)
-|.+|..+.+. ...++..+. . .++..+..+++|+.++++.+...+. .+.+..+++|++|++++|.
T Consensus 38 ~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l-----~~~~~~l~~L~~L~Ls~n~ 111 (768)
T 3rgz_A 38 NPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-----VSGFKCSASLTSLDLSRNS 111 (768)
T ss_dssp CGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC-----CCCCCCCTTCCEEECCSSE
T ss_pred CCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC-----chhhccCCCCCEEECCCCc
Confidence 35579888775 223333322 1 2677788888888888876653221 1246778889999999887
Q ss_pred ccchH-hHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHH--HhhCCCCceeeccccc
Q 006331 111 LFTKV-GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRI--AACCRKLKLLCLKWCI 187 (650)
Q Consensus 111 ~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 187 (650)
..... ....+. .+++|++|++++|......+...+..+++|++|++++|...+ .....+ ...+++|++|++++|.
T Consensus 112 l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 112 LSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNK 189 (768)
T ss_dssp EEEEGGGGGGGG-GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHHHHHHTTCCTTCCEEECCSSE
T ss_pred CCCcCCChHHHh-CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCChhhhhhccCCCCCEEECCCCc
Confidence 44322 112344 888899999988864433332223667888888888886432 222221 3347888888888875
Q ss_pred ccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCCh
Q 006331 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH 267 (650)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (650)
.....+. ..+++|++|++++|.+.+..+. ++++++|++|++++|...+ .....+.. +++|++|++++|.....
T Consensus 190 l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~-l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 190 ISGDVDV----SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG-DFSRAIST-CTELKLLNISSNQFVGP 262 (768)
T ss_dssp EESCCBC----TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS-CHHHHTTT-CSSCCEEECCSSCCEES
T ss_pred ccccCCc----ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC-cccHHHhc-CCCCCEEECCCCcccCc
Confidence 4433332 3678888888888877765544 7788888888888865433 33444444 77888888877652111
Q ss_pred HHHHHhhccCcccchhhcccCc------------------------CCchhHHHHhhcCCCCcEEEecCCcCCHhHHHH-
Q 006331 268 VGLSSLIKGADYLQQLILAYSF------------------------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA- 322 (650)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~~~------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 322 (650)
. +. ..+++|++|++++|. .+.+..|..+..+++|++|++++|.+.+..+..
T Consensus 263 ~--~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 263 I--PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp C--CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred c--Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence 0 10 134445555544441 233344444555555555555555544332222
Q ss_pred HHhhcCCCcEEecCCCCCCChHHHHHHHhcCC-CCcEEEccCCCCccHHHHHHHH-hcCCCCCEEEcCCCccCCHHHHHH
Q 006331 323 IGNWHGSLKELSLSKCSGVTDEELSFVVQSHK-ELRKLDITCCRKITYASINSIT-KTCTSLTSLRMECCKLVSWEAFVL 400 (650)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 400 (650)
+. .+++|++|++++|.. .. .++..+..++ +|+.|++++|.. .......+. ..+++|+.|++++|... ...+..
T Consensus 339 l~-~l~~L~~L~Ls~n~l-~~-~~p~~l~~l~~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~ 413 (768)
T 3rgz_A 339 LL-KMRGLKVLDLSFNEF-SG-ELPESLTNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPT 413 (768)
T ss_dssp HT-TCTTCCEEECCSSEE-EE-CCCTTHHHHTTTCSEEECCSSEE-EEECCTTTTCSTTCCCCEEECCSSEEE-EECCGG
T ss_pred Hh-cCCCCCEEeCcCCcc-Cc-cccHHHHhhhcCCcEEEccCCCc-CCCcChhhhhcccCCccEEECCCCccc-cccCHH
Confidence 22 455555555555421 10 0011122222 555555555431 110011110 01456777777776432 122222
Q ss_pred HhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhc
Q 006331 401 IGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHG 480 (650)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 480 (650)
+. .+++|+.|++++|.+.+..+..+..+++|+.|++++| .++......+. .+++|+.|++++|..... ++.....
T Consensus 414 l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~--~p~~l~~ 488 (768)
T 3rgz_A 414 LS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELM-YVKTLETLILDFNDLTGE--IPSGLSN 488 (768)
T ss_dssp GG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGG-GCTTCCEEECCSSCCCSC--CCGGGGG
T ss_pred Hh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHc-CCCCceEEEecCCcccCc--CCHHHhc
Confidence 33 6788888888888887777777888888888888888 66644333333 678888888888753321 2333457
Q ss_pred CCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCC-hhhHHH------
Q 006331 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIN-DNGMIP------ 553 (650)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~------ 553 (650)
+++|++|++++| .++...+..+..+++|+.|++++| .++.. ++..+..+++|+.|++++|+ ++ ......
T Consensus 489 l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 489 CTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNN-SFSGN-IPAELGDCRSLIWLDLNTNL-FNGTIPAAMFKQSGK 564 (768)
T ss_dssp CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCEEE-CCGGGGGCTTCCEEECCSSE-EESBCCGGGGTTTTC
T ss_pred CCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCC-cccCc-CCHHHcCCCCCCEEECCCCc-cCCcCChHHhcccch
Confidence 788999999888 577666677888888999999888 55533 34556778889999988883 22 100000
Q ss_pred --------------------------------------------------------------HHHhCCcCCeEEeecCCC
Q 006331 554 --------------------------------------------------------------LAQYSQNLKQINLSYCSV 571 (650)
Q Consensus 554 --------------------------------------------------------------~~~~~~~L~~L~l~~~~i 571 (650)
....+++|+.|++++|++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 001246788889999988
Q ss_pred CcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCChh-----HHHHhhhcccEEEec
Q 006331 572 TDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQS-----FLHYMEAQNFLFLWR 642 (650)
Q Consensus 572 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~~-----~~~~~~~~~~~~~~~ 642 (650)
++..+..++.+++|+.|++.+..- ...+++.+..+++|+.|+++ |.+.|.+|.. .++.+++.+|.+...
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred cccCCHHHhccccCCEEeCcCCcc--CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 887788888888888888886421 11233445588888888888 7777788875 366677778877543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.6e-41 Score=364.40 Aligned_cols=474 Identities=17% Similarity=0.159 Sum_probs=319.4
Q ss_pred hCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCC
Q 006331 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (650)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (650)
.+++|++|++++|...+..+ +..+++|++|++++|...+.. .. ...+++|++|++++|......+..+ ..++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~ 247 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI--PF-LGDCSALQHLDISGNKLSGDFSRAI--STCT 247 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCC--CB-CTTCCSCCEEECCSSCCCSCHHHHT--TTCS
T ss_pred cCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCC--cc-cccCCCCCEEECcCCcCCCcccHHH--hcCC
Confidence 45555555555554222211 145556666666655432211 11 2235666666666664333333222 3566
Q ss_pred CCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccch
Q 006331 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (650)
+|++|++++|.+.+..+.. .+++|++|++++|...+. .+..+...+++|++|++++|. +. ..++..+..+++|++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~-ip~~~~~~~~~L~~L~Ls~n~-l~-~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNH-FY-GAVPPFFGSCSLLES 322 (768)
T ss_dssp SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEES-CCCCSCTTCTTCSEEECCSSE-EE-ECCCGGGGGCTTCCE
T ss_pred CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCc-cCHHHHhhcCcCCEEECcCCc-CC-CccchHHhcCCCccE
Confidence 6666666666655433332 566666666666543211 122233325788888888875 22 123566788999999
Q ss_pred hhcccCcCCchhHHHH-hhcCCCCcEEEecCCcCCHhHHHHHHhhcC-CCcEEecCCCCCCChHHHHHHHhc--CCCCcE
Q 006331 283 LILAYSFWVSADLSKC-LHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQS--HKELRK 358 (650)
Q Consensus 283 L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~ 358 (650)
|++++| .+.+..|.. +..+++|++|++++|.+.+..+..+. .++ +|+.|++++|.. ... ++..+.. +++|+.
T Consensus 323 L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l-~~~-~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 323 LALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNF-SGP-ILPNLCQNPKNTLQE 398 (768)
T ss_dssp EECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEE-EEE-CCTTTTCSTTCCCCE
T ss_pred EECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCc-CCC-cChhhhhcccCCccE
Confidence 999998 455455554 88999999999999998766666666 444 999999998742 211 1111222 678999
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecC
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (650)
|++++|.... ..+.....+++|+.|++++|... ...+..+. .+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 399 L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 399 LYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLS-GTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp EECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEE-SCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred EECCCCcccc--ccCHHHhcCCCCCEEECcCCccc-CcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 9999987322 22333457899999999997532 22223344 78999999999999998888889999999999999
Q ss_pred CCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC
Q 006331 439 ICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP 518 (650)
Q Consensus 439 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (650)
+| .++......+ ..+++|+.|++++|.... .++.....+++|++|++++| .++...+..+..+++|+.|++++|
T Consensus 475 ~N-~l~~~~p~~l-~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N- 548 (768)
T 3rgz_A 475 FN-DLTGEIPSGL-SNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTN- 548 (768)
T ss_dssp SS-CCCSCCCGGG-GGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSS-
T ss_pred CC-cccCcCCHHH-hcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCC-
Confidence 99 7765444333 478999999999876432 13334557899999999999 577677778889999999999998
Q ss_pred CCChH-H--H------------------------------------------------------------------HHHH
Q 006331 519 RISAI-G--L------------------------------------------------------------------SAIA 529 (650)
Q Consensus 519 ~l~~~-~--~------------------------------------------------------------------~~~~ 529 (650)
.++.. . + +..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 33211 0 0 0012
Q ss_pred hcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCc
Q 006331 530 MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQ 609 (650)
Q Consensus 530 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 609 (650)
..+++|+.|++++| .++...-. ....+++|+.|++++|.+++..+..++.+++|+.|++++.. -...++..+..++
T Consensus 629 ~~l~~L~~LdLs~N-~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~--l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 629 DNNGSMMFLDMSYN-MLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK--LDGRIPQAMSALT 704 (768)
T ss_dssp SSSBCCCEEECCSS-CCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEECCCGGGGGCC
T ss_pred hccccccEEECcCC-cccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc--ccCcCChHHhCCC
Confidence 23578999999999 55422111 12567999999999999999899999999999999998642 1122344566999
Q ss_pred ccceeeec-cccccCCChh
Q 006331 610 GLIKVKLN-ASFRPLLPQS 627 (650)
Q Consensus 610 ~L~~l~l~-~~~~~~~p~~ 627 (650)
+|+.|+++ |++.|.+|..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSEEECCSSEEEEECCSS
T ss_pred CCCEEECcCCcccccCCCc
Confidence 99999999 8899998863
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.5e-33 Score=300.75 Aligned_cols=413 Identities=20% Similarity=0.289 Sum_probs=265.3
Q ss_pred HHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCC-CCCcccccccc-cCCCccEEecCCCCCC--ChhH
Q 006331 168 IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVV-KLQYLEDLVLEGCHGI--DDDG 243 (650)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~l~~L~~L~l~~~~~~--~~~~ 243 (650)
+..+...+++|++|++++|. +.......+...+++|++|++++| .+++..+..+. ++++|++|++++|... ....
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 34444456666666666653 444444444334556666666555 33322222222 3555555555544310 1111
Q ss_pred HHHHHhcCcccceeecCCCC-CCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHH
Q 006331 244 LASVEYSCKSLKALNLSKCQ-NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA 322 (650)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 322 (650)
+..+...+++|++|+++++. .+....+.... ..+++|++|++++|..... +..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~-------------------------~~~~~L~~L~L~~~~~~~~-l~~ 229 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLV-------------------------TRCPNLKSLKLNRAVPLEK-LAT 229 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH-------------------------HHCTTCCEEECCTTSCHHH-HHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHH-------------------------HhCCCCcEEecCCCCcHHH-HHH
Confidence 11222223444444444432 22223333333 3455566666655522222 222
Q ss_pred HHhhcCCCcEEecCCCCC-CCh---HHHHHHHhcCCCCcEE-EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHH
Q 006331 323 IGNWHGSLKELSLSKCSG-VTD---EELSFVVQSHKELRKL-DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA 397 (650)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~-~~~---~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 397 (650)
+...+++|++|.+..+.. +.. ..+...+..+++|+.+ .+.+. ....+..+...+++|+.|++++|. +++..
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~ 305 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNLSYAT-VQSYD 305 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC---CGGGGGGGHHHHTTCCEEECTTCC-CCHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc---chhhHHHHHHhhCCCCEEEccCCC-CCHHH
Confidence 333556666666554422 111 1233345667777777 33332 222334444456788888888777 66666
Q ss_pred HHHHhhcCCCCcEEEecCCccChhhHHhhh-cCCCCCeeec--------CCCCCCChhhHHHHHhcCccCcEEeccCCCC
Q 006331 398 FVLIGQQCQYLEELDITENEVNDEGLKSIS-RCSKLSSLKL--------GICSNITDEGLKHVGSTCSMLKELDLYRSSG 468 (650)
Q Consensus 398 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l--------~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 468 (650)
+..+...+++|++|+++++ +.+.....+. .+++|++|++ .+|..+++.++..+...+++|+.|.+ +|..
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~ 383 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQ 383 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCC
Confidence 6666667788888888877 4444444444 4788888887 34458898889888888999999966 4678
Q ss_pred CCHHHHHHHHhcCCCCCEEeCC-----CCCCCC----hHHHHH-hhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 469 ITDVGVVAVSHGCPSLEMINIA-----YNERIT----DTSLIS-LSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 469 ~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~----~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+++.++..+...+++|+.|+++ +|..++ +.+... +..+++|++|++++ .+++.++..+...+++|+.|
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEe
Confidence 9998888888889999999999 566787 445444 45699999999977 78888888887779999999
Q ss_pred ecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHH-hcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec
Q 006331 539 DIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIAL-ASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN 617 (650)
Q Consensus 539 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~ 617 (650)
++++| .+++.+...+...+++|+.|++++|++++.+...+ ..+++|+.|++.+|+. ...++......+|+|+...+.
T Consensus 462 ~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 462 SVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred eccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence 99999 79998888887889999999999999988777654 4589999999999955 777777666788999766665
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-37 Score=335.92 Aligned_cols=534 Identities=18% Similarity=0.149 Sum_probs=314.4
Q ss_pred HHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHH
Q 006331 65 RTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAA 144 (650)
Q Consensus 65 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 144 (650)
..+..+++|++|+++++. +..... ..+..+++|++|++++|...... ...+. .+++|++|++++|. ++.++..
T Consensus 43 ~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~-~~~~~-~l~~L~~L~L~~n~-l~~~~~~ 115 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNT-ISKLEP---ELCQKLPMLKVLNLQHNELSQLS-DKTFA-FCTNLTELHLMSNS-IQKIKNN 115 (680)
T ss_dssp GGGGGGTTCSEEECCSSC-CCCCCT---THHHHCTTCCEEECCSSCCCCCC-TTTTT-TCTTCSEEECCSSC-CCCCCSC
T ss_pred HHHhCCCcCcEEECCCCc-cCccCH---HHHhcccCcCEEECCCCccCccC-hhhhc-cCCCCCEEECCCCc-cCccChh
Confidence 345666777777777665 221111 02345667777777766532211 11233 66777777777765 4444434
Q ss_pred HHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHH-HhhCCCCceeecCCCCCCcccccccc
Q 006331 145 AIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV-ALKCQEIRTLDLSYLPITEKCLPPVV 223 (650)
Q Consensus 145 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~ 223 (650)
.+..+++|++|++++|...+ .....+ ..+++|++|++++|.. ...+...+ ...+++|++|++++|.+.+..+..+.
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSS-TKLGTQ-VQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCCCSS-SCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred HccccCCCCEEECCCCcccc-cCchhh-cccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 56677777777777765322 111112 2367777777777633 22222222 12457777777777777766666677
Q ss_pred cCCCccEEecCCCCCCChhHHHHHHh--cCcccceeecCCCCCCChHHHHHhhccCc--ccchhhcccCcCCchhHHHHh
Q 006331 224 KLQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLIKGAD--YLQQLILAYSFWVSADLSKCL 299 (650)
Q Consensus 224 ~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~l 299 (650)
.+++|+.|.+.++... ......+.. ..++|++|+++++. +... .+..+..++ +|++|++++| .+....+..+
T Consensus 193 ~l~~L~~L~l~~~~l~-~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~ 268 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLG-PSLTEKLCLELANTSIRNLSLSNSQ-LSTT-SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF 268 (680)
T ss_dssp GSSEECEEECTTCCCH-HHHHHHHHHHHTTSCCCEEECTTSC-CCEE-CTTTTGGGGGSCCCEEECTTS-CCCEECTTTT
T ss_pred hhhhhhhhhccccccC-hhhHHHHHHHhhhccccEEEccCCc-cccc-ChhHhhccCcCCCCEEECCCC-CcCccCcccc
Confidence 7777777777765432 222222211 14778888888775 2221 123344444 4999999888 5655566778
Q ss_pred hcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChH---HHH----HHHhcCCCCcEEEccCCCCccHHHH
Q 006331 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELS----FVVQSHKELRKLDITCCRKITYASI 372 (650)
Q Consensus 300 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~----~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (650)
..+++|++|++++|.+....+..+. .+++|+.|+++++...... .++ ..+..+++|++|+++++.. ... .
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~-~ 345 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGI-K 345 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCC-C
T ss_pred cCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCC-C
Confidence 8889999999999888766555555 6888999998865321110 000 0245678899999988863 221 1
Q ss_pred HHHHhcCCCCCEEEcCCCccC----CHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhH
Q 006331 373 NSITKTCTSLTSLRMECCKLV----SWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGL 448 (650)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~ 448 (650)
...+..+++|+.|++++|..- ....+..+ ..++|+.|++++|.+....+..+..+++|+.|++++| .++....
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 422 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELT 422 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECC
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhccc--ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccC
Confidence 223346788999998876421 11111111 2357888888888888777777778888888888888 5543222
Q ss_pred HHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCC--hHHHHHhhcCCCCcEEEecCCCCCChHHHH
Q 006331 449 KHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERIT--DTSLISLSECLRLKVLEIRGCPRISAIGLS 526 (650)
Q Consensus 449 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 526 (650)
......+++|+.|++++|.. .... ......+++|+.|++++|. ++ ...+..+..+++|+.|++++| .++... +
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~ 497 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKY-LQLT-RNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANIN-D 497 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSE-EECC-TTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC-T
T ss_pred cccccCcccccEEecCCCCc-ceeC-hhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcCC-h
Confidence 12234677888888887642 2110 1122346777777777763 43 223344566777777777777 555431 2
Q ss_pred HHHhcCCCccEEecCCCCCCChhhHHH-------HHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHH
Q 006331 527 AIAMGCRQLAMLDIKKCFNINDNGMIP-------LAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPN 599 (650)
Q Consensus 527 ~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 599 (650)
..+..+++|++|++++| .++...... ....+++|+.|++++|+++.+....+.++++|+.|++.+. ...
T Consensus 498 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N---~l~ 573 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN---NLN 573 (680)
T ss_dssp TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS---CCC
T ss_pred hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC---CCC
Confidence 33456777777777777 554321110 1234577777777777777655555677777777777643 222
Q ss_pred HHHH-HHHhCcccceeeeccccccCCChh
Q 006331 600 GLVN-ALLRCQGLIKVKLNASFRPLLPQS 627 (650)
Q Consensus 600 ~~~~-~~~~~~~L~~l~l~~~~~~~~p~~ 627 (650)
+++. .+..+++|+.|+++++....+|+.
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 2222 244677777777774444445543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-36 Score=322.57 Aligned_cols=517 Identities=16% Similarity=0.141 Sum_probs=332.3
Q ss_pred CceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccC
Q 006331 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (650)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 151 (650)
++++|+++++. +..... ..+..+++|++|++++|.... .....+. .+++|++|++++|. ++......+..+++
T Consensus 34 ~l~~L~Ls~n~-i~~~~~---~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNV-LPTIQN---TTFSRLINLTFLDLTRCQIYW-IHEDTFQ-SQHRLDTLVLTANP-LIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCC-CSEECT---TTSTTCTTCSEEECTTCCCCE-ECTTTTT-TCTTCCEEECTTCC-CSEECTTTTSSCTT
T ss_pred cCcEEEccCCc-cCcCCh---hHhccCccceEEECCCCccce-eChhhcc-CccccCeeeCCCCc-ccccChhhhccccc
Confidence 57888888776 332111 145677788888888776332 2222333 77788888888776 44444456777888
Q ss_pred cceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCcc--
Q 006331 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE-- 229 (650)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-- 229 (650)
|++|++++|.... .....+ ..+++|++|++++|.. ...+...+ ..+++|++|++++|.+....+..++.+++|+
T Consensus 107 L~~L~L~~n~i~~-l~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 107 LKHLFFIQTGISS-IDFIPL-HNQKTLESLYLGSNHI-SSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CCEEECTTSCCSC-GGGSCC-TTCTTCCEEECCSSCC-CCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred ccEeeccccCccc-CCcchh-ccCCcccEEECCCCcc-cccCcccc-cCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 8888888776332 211222 2377888888887743 22211111 1477788888888877766666777777777
Q ss_pred EEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc--cchhhcccCc-----CCchhHHHHhhcC
Q 006331 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY--LQQLILAYSF-----WVSADLSKCLHNF 302 (650)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~-----~~~~~~~~~l~~l 302 (650)
.|++++|.... ..... .. ..+|++|+++++..+ +..+..+.+ ++.+.+.... .+....+..+...
T Consensus 183 ~L~l~~n~l~~-~~~~~-~~-~~~L~~L~l~~~~~~-----~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 183 SLNLNGNDIAG-IEPGA-FD-SAVFQSLNFGGTQNL-----LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp EEECTTCCCCE-ECTTT-TT-TCEEEEEECTTCSCH-----HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred EEecCCCccCc-cChhH-hh-hccccccccCCchhH-----HHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 77777764333 21221 22 457778888776521 222222222 2222222211 1122222222222
Q ss_pred CCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCC
Q 006331 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (650)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (650)
+|+.|++++|.++......+. .+++|++|+++++. +. .++..+..+++|++|++++|.... . .+.....+++|
T Consensus 255 -~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L 327 (606)
T 3t6q_A 255 -SVESINLQKHYFFNISSNTFH-CFSGLQELDLTATH-LS--ELPSGLVGLSTLKKLVLSANKFEN-L-CQISASNFPSL 327 (606)
T ss_dssp -EEEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSC-CS--CCCSSCCSCTTCCEEECTTCCCSB-G-GGGCGGGCTTC
T ss_pred -ceeEEEeecCccCccCHHHhc-cccCCCEEeccCCc-cC--CCChhhcccccCCEEECccCCcCc-C-chhhhhccCcC
Confidence 788999999888766555555 68899999999875 33 233335677899999999887332 1 12334568899
Q ss_pred CEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhh--HHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcE
Q 006331 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG--LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (650)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~ 460 (650)
+.|++++|..........+. .+++|++|++++|.+.... +..+..+++|++|++++| .+.......+ ..+++|+.
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~ 404 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF-KECPQLEL 404 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTT-TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT-TTCTTCSE
T ss_pred CEEECCCCCcccccchhhhh-ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh-cCCccCCe
Confidence 99999987543211111122 7899999999999888765 567788999999999998 6654433333 36889999
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCccEE
Q 006331 461 LDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGL--SAIAMGCRQLAML 538 (650)
Q Consensus 461 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L 538 (650)
|++++|.. +..........+++|++|++++| .++......+..+++|++|++++| .+++..+ ...+..+++|++|
T Consensus 405 L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 405 LDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp EECTTCCE-ECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEE
T ss_pred EECCCCcC-CCcccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEE
Confidence 99988653 21111222446799999999998 577766777888999999999999 5554222 2346788999999
Q ss_pred ecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-
Q 006331 539 DIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN- 617 (650)
Q Consensus 539 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~- 617 (650)
++++| .++......+ ..+++|+.|++++|++++..+..+..++.| .|++.++.-.. ..+..+..+++|+.|+++
T Consensus 482 ~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 482 VLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI--ILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp ECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC--CCGGGHHHHHTSSEEECTT
T ss_pred ECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc--cCHhhcccCCCCCEEeCCC
Confidence 99999 6665433222 457899999999999999888888888888 88887652111 112234578999999999
Q ss_pred cccccCCC
Q 006331 618 ASFRPLLP 625 (650)
Q Consensus 618 ~~~~~~~p 625 (650)
|.+...-+
T Consensus 557 N~~~c~c~ 564 (606)
T 3t6q_A 557 NPLDCTCS 564 (606)
T ss_dssp CCEECSGG
T ss_pred CCccccCC
Confidence 66665444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-36 Score=325.26 Aligned_cols=498 Identities=16% Similarity=0.178 Sum_probs=347.2
Q ss_pred HHHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHH
Q 006331 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAA 143 (650)
Q Consensus 64 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 143 (650)
+..+..+++|++|+++++....... ..+..+++|++|++++|..... ....+. .+++|++|++++|. ++....
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~L~~n~-i~~l~~ 122 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFM-AETALS-GPKALKHLFFIQTG-ISSIDF 122 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCSEE-CTTTTS-SCTTCCEEECTTSC-CSCGGG
T ss_pred hhHhccCccceEEECCCCccceeCh----hhccCccccCeeeCCCCccccc-Chhhhc-ccccccEeeccccC-cccCCc
Confidence 5678899999999999987322211 1467899999999999874332 122333 88999999999998 555544
Q ss_pred HHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc--eeecCCCCCCcccccc
Q 006331 144 AAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR--TLDLSYLPITEKCLPP 221 (650)
Q Consensus 144 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~ 221 (650)
..+..+++|++|++++|.. .......+.. +++|++|++++|. +.......+ ..+++|+ .|++++|.+.+..+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHI-SSIKLPKGFP-TEKLKVLDFQNNA-IHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp SCCTTCTTCCEEECCSSCC-CCCCCCTTCC-CTTCCEEECCSSC-CCEECHHHH-HTTTTCCSEEEECTTCCCCEECTTT
T ss_pred chhccCCcccEEECCCCcc-cccCcccccC-CcccCEEEcccCc-ccccChhhh-hhhcccceeEEecCCCccCccChhH
Confidence 5688999999999999874 3222233333 8999999999984 444433333 4789999 8999999998655555
Q ss_pred cccCCCccEEecCCCCCCChhHHHHHHhcCcc--cceeecCCCCCCChHHH-HHhhccCc--ccchhhcccCcCCchhHH
Q 006331 222 VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKS--LKALNLSKCQNISHVGL-SSLIKGAD--YLQQLILAYSFWVSADLS 296 (650)
Q Consensus 222 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~-~~~~~~~~--~L~~L~l~~~~~~~~~~~ 296 (650)
+ ...+|+.|++.+|.... ..+.. +.+ ++.+.+..........+ ...+..+. +|+.|+++++ .+.+..+
T Consensus 199 ~-~~~~L~~L~l~~~~~~~----~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~ 271 (606)
T 3t6q_A 199 F-DSAVFQSLNFGGTQNLL----VIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISS 271 (606)
T ss_dssp T-TTCEEEEEECTTCSCHH----HHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCT
T ss_pred h-hhccccccccCCchhHH----HHhhh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCH
Confidence 4 45789999999986321 22222 433 34444443221111110 11222222 7888999888 5665566
Q ss_pred HHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHH
Q 006331 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (650)
Q Consensus 297 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (650)
..+..+++|++|++++|.++. .+..+. .+++|++|++++|. +... .+..+..+++|+.|++++|...... .....
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~-lp~~l~-~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~ 346 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSE-LPSGLV-GLSTLKKLVLSANK-FENL-CQISASNFPSLTHLSIKGNTKRLEL-GTGCL 346 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSC-CCSSCC-SCTTCCEEECTTCC-CSBG-GGGCGGGCTTCSEEECCSCSSCCBC-CSSTT
T ss_pred HHhccccCCCEEeccCCccCC-CChhhc-ccccCCEEECccCC-cCcC-chhhhhccCcCCEEECCCCCccccc-chhhh
Confidence 668889999999999998773 333343 67899999999885 3322 1234667899999999988633211 11223
Q ss_pred hcCCCCCEEEcCCCccCCHHH-HHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcC
Q 006331 377 KTCTSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC 455 (650)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 455 (650)
..+++|+.|++++|....... ...+. .+++|++|++++|.+.+..+..+..+++|+.|++++| .++..........+
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNL 424 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTC
T ss_pred hccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCc
Confidence 467899999999876432211 12233 7899999999999988877788888999999999998 66544333334478
Q ss_pred ccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH---HHHhhcCCCCcEEEecCCCCCChHHHHHHHhcC
Q 006331 456 SMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTS---LISLSECLRLKVLEIRGCPRISAIGLSAIAMGC 532 (650)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 532 (650)
++|+.|++++|. ++.. .......+++|++|++++| .+++.. ...+..+++|++|++++| .++... +..+..+
T Consensus 425 ~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 499 (606)
T 3t6q_A 425 HLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID-QHAFTSL 499 (606)
T ss_dssp TTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC-TTTTTTC
T ss_pred ccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccC-hhhhccc
Confidence 999999999875 3321 1233446899999999998 465532 245778999999999999 676642 3456788
Q ss_pred CCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeeccc
Q 006331 533 RQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVV 594 (650)
Q Consensus 533 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 594 (650)
++|++|++++| .++......+ ..+++| .|++++|+++...+..+..+++|+.|++.+++
T Consensus 500 ~~L~~L~Ls~N-~l~~~~~~~l-~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 500 KMMNHVDLSHN-RLTSSSIEAL-SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTCCEEECCSS-CCCGGGGGGG-TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cCCCEEECCCC-ccCcCChhHh-Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 99999999999 7766544333 456788 99999999998888778888999999998653
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-36 Score=326.38 Aligned_cols=541 Identities=16% Similarity=0.089 Sum_probs=312.0
Q ss_pred CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (650)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (650)
+++++|+++++. +..... ..+..+++|++|+++++.... .....+. .+++|++|++++|. ++.++...+..++
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~L~~n~-l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPA---ANFTRYSQLTSLDVGFNTISK-LEPELCQ-KLPMLKVLNLQHNE-LSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSC-CCCCCG---GGGGGGTTCSEEECCSSCCCC-CCTTHHH-HCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEECCCCC-CCCcCH---HHHhCCCcCcEEECCCCccCc-cCHHHHh-cccCcCEEECCCCc-cCccChhhhccCC
Confidence 457777777665 222111 024556677777777665322 2122333 66677777777665 4444444566677
Q ss_pred CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccc--cCCCc
Q 006331 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV--KLQYL 228 (650)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L 228 (650)
+|++|++++|.. .......+. .+++|++|++++|.... .+...+ ..+++|++|++++|.+++..+..+. .+++|
T Consensus 98 ~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 98 NLTELHLMSNSI-QKIKNNPFV-KQKNLITLDLSHNGLSS-TKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCSEEECCSSCC-CCCCSCTTT-TCTTCCEEECCSSCCSC-CCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CCCEEECCCCcc-CccChhHcc-ccCCCCEEECCCCcccc-cCchhh-cccccCCEEEccCCcccccCHHHhhccccccc
Confidence 777777776652 221111222 26677777776663222 111111 2566677777777666554444433 34667
Q ss_pred cEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhh--ccCcccchhhcccCcCCchhHHHHhhcCC--C
Q 006331 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI--KGADYLQQLILAYSFWVSADLSKCLHNFP--M 304 (650)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~l~--~ 304 (650)
++|++++|.. .......+.. +++|+.+++.++. +......... ...++|+.|+++++ .+.+..+..+..++ +
T Consensus 174 ~~L~L~~n~l-~~~~~~~~~~-l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 174 KKLELSSNQI-KEFSPGCFHA-IGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp SEEECTTCCC-CCBCTTGGGG-SSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTGGGGGSC
T ss_pred cEEECCCCcc-cccChhhhhh-hhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccCC-cccccChhHhhccCcCC
Confidence 7777766533 2222222333 6666666666654 2222111111 12467777777776 45545555555554 3
Q ss_pred CcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHH-------HHh
Q 006331 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS-------ITK 377 (650)
Q Consensus 305 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~~ 377 (650)
|+.|++++|.+....+..+. .+++|++|+++++. +... .+..+..+++|+.|++.++.......... .+.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNN-IQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCC-BSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCEEECCCCCcCccCccccc-CcccccEeeCCCCc-cCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 88888887777655544444 67778888887764 2211 12234567778888877653211111100 123
Q ss_pred cCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccCh--hhHHhhhc--CCCCCeeecCCCCCCChhhHHHHHh
Q 006331 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND--EGLKSISR--CSKLSSLKLGICSNITDEGLKHVGS 453 (650)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~--~~~L~~L~l~~~~~i~~~~~~~l~~ 453 (650)
.+++|+.|++++|.... .....+. .+++|++|++++|.+.. .....+.. .++|+.|++++| .++......+ .
T Consensus 327 ~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~-~ 402 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPG-IKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAF-S 402 (680)
T ss_dssp TCTTCCEEECCSCCBCC-CCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTT-T
T ss_pred cCCCCCEEECCCCccCC-CChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhh-h
Confidence 56778888887764322 1111222 67778888887765322 11122222 357888888887 6665433333 3
Q ss_pred cCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChH-HHHHHHhcC
Q 006331 454 TCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAI-GLSAIAMGC 532 (650)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~ 532 (650)
.+++|+.|++++|..... .......++++|++|++++| .++......+..+++|++|++++| .++.. ..+..+..+
T Consensus 403 ~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQE-LTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPL 479 (680)
T ss_dssp TCTTCCEEECCSSCCEEE-CCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTC
T ss_pred CCCCCCEEeCCCCcCccc-cCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhccc-cccccccCCcccccC
Confidence 678889999887653211 01123346788999999888 466666667777889999999888 44321 234456778
Q ss_pred CCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHH--------HHhcCCCCCceeeecccCCCHHHHHH-
Q 006331 533 RQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLI--------ALASINCLQNMTILHVVGLTPNGLVN- 603 (650)
Q Consensus 533 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~- 603 (650)
++|+.|++++| .++......+ ..+++|+.|++++|+++..... .+.++++|+.|++.+. ....++.
T Consensus 480 ~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N---~l~~i~~~ 554 (680)
T 1ziw_A 480 RNLTILDLSNN-NIANINDDML-EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN---GFDEIPVE 554 (680)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS---CCCCCCTT
T ss_pred CCCCEEECCCC-CCCcCChhhh-ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC---CCCCCCHH
Confidence 99999999999 6664332222 4578999999999998865322 2567788888888754 2223333
Q ss_pred HHHhCcccceeeeccccccCCChh------HHHHhhhcccEEEe
Q 006331 604 ALLRCQGLIKVKLNASFRPLLPQS------FLHYMEAQNFLFLW 641 (650)
Q Consensus 604 ~~~~~~~L~~l~l~~~~~~~~p~~------~~~~~~~~~~~~~~ 641 (650)
.+..+++|+.|+++++....+|.. .++.+++++|++..
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 356899999999995555566653 35666677776543
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=4.9e-32 Score=288.90 Aligned_cols=450 Identities=18% Similarity=0.212 Sum_probs=306.1
Q ss_pred HHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccccccc
Q 006331 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (650)
Q Consensus 143 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (650)
...+..+++|++|+++++....+... .+ . ............+...+++|++|+++++.+++..+..+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~------~~----~---~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNL------IP----E---NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTC------SC----T---TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred HHHHHhCCCCeEEEecCCcchhhccc------cc----c---cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 45667778888888876543221100 00 0 00011111222223355666666666655555444444
Q ss_pred cc-CCC-ccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCCh---HHHHHhhccCcccchhhcccCcCCc----h
Q 006331 223 VK-LQY-LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH---VGLSSLIKGADYLQQLILAYSFWVS----A 293 (650)
Q Consensus 223 ~~-l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~----~ 293 (650)
+. +++ |++|++.+|..+....+..+...+++|++|++++|. +.+ ..+......+++|++|+++++. +. .
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~ 210 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPK 210 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHH
Confidence 44 333 666666666544444455555446777777777664 211 1144555666777777776652 32 3
Q ss_pred hHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCC-ChHHHHHHHhcCCCCcEEEccCCCCccHHHH
Q 006331 294 DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGV-TDEELSFVVQSHKELRKLDITCCRKITYASI 372 (650)
Q Consensus 294 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (650)
.++..+..+++|++|++.+|.+.+ .+..+. .+++|++|.++.+... ........+..+++|+.+.++++. ...+
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l 285 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILE-LVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEM 285 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGG-GHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTG
T ss_pred HHHHHHhhCCCCcEEeccCccHHH-HHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHH
Confidence 455556677788888888776654 233343 6788888888643221 111112224466788888887753 2234
Q ss_pred HHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhh-hcCCCCCeeecCC----------CC
Q 006331 373 NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSKLSSLKLGI----------CS 441 (650)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~----------~~ 441 (650)
+.....+++|++|++++|. +++..+..+...+++|++|+++ +.+.+.....+ ..+++|++|++++ |.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 4455678899999999987 7777776666689999999998 55555555554 4689999999994 66
Q ss_pred CCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCC---CCCCChH----HH-HHhhcCCCCcEEE
Q 006331 442 NITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAY---NERITDT----SL-ISLSECLRLKVLE 513 (650)
Q Consensus 442 ~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~----~~-~~l~~~~~L~~L~ 513 (650)
.+++.++..+...+++|++|++ .|..+++.++..+...+++|+.|++++ |..+++. +. ..+..+++|++|+
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 8998888888888999999999 467899988888888899999999973 4467752 33 3345699999999
Q ss_pred ecCCC-CCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHH-hcCCCCCceeee
Q 006331 514 IRGCP-RISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIAL-ASINCLQNMTIL 591 (650)
Q Consensus 514 l~~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~ 591 (650)
++.|. .+++.++..+...+++|++|++++| .+++.+...+...+++|+.|++++|++++.+...+ ..+++|+.|++.
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 98774 3788888888888999999999999 79988888888889999999999999988766554 579999999999
Q ss_pred cccCCCHHHHHHHHHhCcccceeeec
Q 006331 592 HVVGLTPNGLVNALLRCQGLIKVKLN 617 (650)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~L~~l~l~ 617 (650)
+|. ++..++......+|.+....+.
T Consensus 522 ~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 522 GYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp SCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred CCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 986 6666665555678888776665
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-36 Score=321.41 Aligned_cols=513 Identities=17% Similarity=0.083 Sum_probs=278.2
Q ss_pred CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (650)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (650)
+++++|+++++. +..... ..+..+++|++|++++|..... ....+. .+++|++|++++|. ++......+..++
T Consensus 32 ~~l~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~-~l~~L~~L~Ls~n~-l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILKS---YSFSNFSELQWLDLSRCEIETI-EDKAWH-GLHHLSNLILTGNP-IQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECTTCCCCEE-CTTTTT-TCTTCCEEECTTCC-CCCCCTTSSTTCT
T ss_pred CCcCEEECCCCC-cCEeCh---hhccCCccCcEEeCCCCccccc-CHHHhh-chhhcCEeECCCCc-ccccChhhcCCcc
Confidence 456666666655 221110 0244556666666666553221 112222 56666666666665 3333334556666
Q ss_pred CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccc-hHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCc-
Q 006331 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT-DLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL- 228 (650)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L- 228 (650)
+|++|++++|...+ .....+. .+++|++|++++|.... ..+..+ ..+++|++|++++|.+.+..+..++.+.+|
T Consensus 105 ~L~~L~L~~n~l~~-~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 105 SLENLVAVETKLAS-LESFPIG-QLITLKKLNVAHNFIHSCKLPAYF--SNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCCEEECTTSCCCC-SSSSCCT-TCTTCCEEECCSSCCCCCCCCGGG--GTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred cCCEEEccCCcccc-ccccccC-CCCCCCEEeCCCCcccceechHhH--hhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 66666666664221 1111122 25666666666653221 112111 356666666666666655444445444333
Q ss_pred ---cEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcC--------CchhHHH
Q 006331 229 ---EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFW--------VSADLSK 297 (650)
Q Consensus 229 ---~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~~~~~ 297 (650)
++|++++|... ......+ . ..+|++|+++++. +.....+..+..+++++.+.+..... +....+.
T Consensus 181 ~~l~~L~l~~n~l~-~~~~~~~-~-~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 181 QVNLSLDMSLNPID-FIQDQAF-Q-GIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp TCCCEEECTTCCCC-EECTTTT-T-TCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred cccceeeccCCCcc-eeCcccc-c-CceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 35666664322 2111111 1 2356666666654 34444455555666555554432100 0111111
Q ss_pred HhhcCCCCcEEEe-cCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHH
Q 006331 298 CLHNFPMLQSIKF-EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (650)
Q Consensus 298 ~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (650)
.+..+ .++.+.+ ..+.+.+..+. +. .+++|+.|+++++..... . .+..+++|++|++++|.. .. ++.+
T Consensus 257 ~l~~l-~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~l-~---~l~~~~~L~~L~l~~n~l-~~--lp~~- 325 (606)
T 3vq2_A 257 GLCDV-TIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVSIKYL-E---DVPKHFKWQSLSIIRCQL-KQ--FPTL- 325 (606)
T ss_dssp TGGGS-EEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCCCCCC-C---CCCTTCCCSEEEEESCCC-SS--CCCC-
T ss_pred hhhhc-cHhheeccccccccccccc-cc-cCCCCCEEEecCccchhh-h---hccccccCCEEEcccccC-cc--cccC-
Confidence 12111 2334444 33444444443 33 667777777777653221 1 344567777888777764 32 2222
Q ss_pred hcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhh--HHhhhcCCCCCeeecCCCCCCChhhHHHHHhc
Q 006331 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG--LKSISRCSKLSSLKLGICSNITDEGLKHVGST 454 (650)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 454 (650)
.+++|+.|++++|...... .+. .+++|++|++++|.+.... +..+..+++|++|++++| .++... .....
T Consensus 326 -~l~~L~~L~l~~n~~~~~~---~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~~~~ 397 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF---KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--ANFMG 397 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC---CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC--CCCTT
T ss_pred -CCCccceeeccCCcCccch---hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch--hhccC
Confidence 5677888887776443322 222 5777888888877776543 456667778888888777 554322 12235
Q ss_pred CccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 006331 455 CSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQ 534 (650)
Q Consensus 455 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 534 (650)
+++|+.|++++|.... .........+++|++|++++| .++...+..+..+++|++|++++| .+++...+..+..+++
T Consensus 398 l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCCCCeeECCCCccCC-ccChhhhhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCC
Confidence 6778888887764222 111122345678888888887 466555566677788888888877 5554323445566778
Q ss_pred ccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCc-ccce
Q 006331 535 LAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQ-GLIK 613 (650)
Q Consensus 535 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~ 613 (650)
|++|++++| .++......+ ..+++|+.|++++|++++..+..+..+++|+.|++.++. +. .++..+..++ +|+.
T Consensus 475 L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~--~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 475 LTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IE--TSKGILQHFPKSLAF 549 (606)
T ss_dssp CCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CC--CEESCGGGSCTTCCE
T ss_pred CCEEECCCC-cCCccChhhh-cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Cc--ccCHhHhhhcccCcE
Confidence 888888888 5554322212 346778888888888777767777777777777777552 22 3333345665 4888
Q ss_pred eeec-cccccCCC
Q 006331 614 VKLN-ASFRPLLP 625 (650)
Q Consensus 614 l~l~-~~~~~~~p 625 (650)
|+++ |.+...-+
T Consensus 550 l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 FNLTNNSVACICE 562 (606)
T ss_dssp EECCSCCCCCSST
T ss_pred EEccCCCcccCCc
Confidence 8887 55554333
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-35 Score=314.49 Aligned_cols=495 Identities=15% Similarity=0.101 Sum_probs=335.5
Q ss_pred HHHHhcCCCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHH
Q 006331 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAA 143 (650)
Q Consensus 64 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 143 (650)
+..+..+++|++|+++++. +..... ..+..+++|++|++++|..... ....+. .+++|++|++++|. ++..+.
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~-l~~i~~---~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~-~l~~L~~L~L~~n~-l~~~~~ 121 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCE-IETIED---KAWHGLHHLSNLILTGNPIQSF-SPGSFS-GLTSLENLVAVETK-LASLES 121 (606)
T ss_dssp TTTTTTCTTCCEEECTTCC-CCEECT---TTTTTCTTCCEEECTTCCCCCC-CTTSST-TCTTCCEEECTTSC-CCCSSS
T ss_pred hhhccCCccCcEEeCCCCc-ccccCH---HHhhchhhcCEeECCCCccccc-ChhhcC-CcccCCEEEccCCc-cccccc
Confidence 4468899999999999987 332211 1457889999999999874332 223333 89999999999998 444443
Q ss_pred HHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHH--HhhCCC-CceeecCCCCCCccccc
Q 006331 144 AAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV--ALKCQE-IRTLDLSYLPITEKCLP 220 (650)
Q Consensus 144 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~-L~~L~l~~~~~~~~~~~ 220 (650)
..+..+++|++|++++|...+ ..+......+++|++|++++|.. ...+...+ ..+++. +.+|++++|.+......
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSCC-CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCcc-eecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 458899999999999997432 12222333499999999999843 32221111 123443 66899999999854444
Q ss_pred ccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCC-----CC--hHHHHHhhccCcccchhhcccCcCCch
Q 006331 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN-----IS--HVGLSSLIKGADYLQQLILAYSFWVSA 293 (650)
Q Consensus 221 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~ 293 (650)
.+ ...+|+.|++++|...+......+.. ++.|+.+++..... +. .......+..+ +++.+++.....+.+
T Consensus 200 ~~-~~~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 200 AF-QGIKLHELTLRGNFNSSNIMKTCLQN-LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSD 276 (606)
T ss_dssp TT-TTCEEEEEEEESCCSCHHHHHHHHHT-TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCG
T ss_pred cc-cCceeeeeeccCCccchhHHHHHhcc-ccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccc
Confidence 44 44499999999986554554455554 88888877643220 00 00111111112 456666655546666
Q ss_pred hHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHH
Q 006331 294 DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN 373 (650)
Q Consensus 294 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (650)
..+. +..+++|+.|++.++.+.... .+. .+++|++|++++|.. .. ++. + .+++|+.|+++++......
T Consensus 277 ~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~-~~~~L~~L~l~~n~l-~~--lp~-~-~l~~L~~L~l~~n~~~~~~--- 344 (606)
T 3vq2_A 277 DIVK-FHCLANVSAMSLAGVSIKYLE--DVP-KHFKWQSLSIIRCQL-KQ--FPT-L-DLPFLKSLTLTMNKGSISF--- 344 (606)
T ss_dssp GGGS-CGGGTTCSEEEEESCCCCCCC--CCC-TTCCCSEEEEESCCC-SS--CCC-C-CCSSCCEEEEESCSSCEEC---
T ss_pred cccc-cccCCCCCEEEecCccchhhh--hcc-ccccCCEEEcccccC-cc--ccc-C-CCCccceeeccCCcCccch---
Confidence 6665 788899999999998876443 333 678899999998864 32 222 2 7889999999988644432
Q ss_pred HHHhcCCCCCEEEcCCCccCCHH-HHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHH
Q 006331 374 SITKTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (650)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~ 452 (650)
....+++|+.|++++|...... ....+. .+++|++|++++|.+.... ..+..+++|+.|++++| .+.........
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHS-TLKRVTEFSAF 420 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTS-EEESTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCccccch-hhccCCCCCCeeECCCC-ccCCccChhhh
Confidence 2346789999999987532211 022233 7899999999998876643 66778899999999998 66544332233
Q ss_pred hcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChH-HHHHhhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 006331 453 STCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDT-SLISLSECLRLKVLEIRGCPRISAIGLSAIAMG 531 (650)
Q Consensus 453 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 531 (650)
..+++|+.|++++|.... . .+.....+++|++|++++| .+++. .+..+..+++|++|++++| .++.. .+..+..
T Consensus 421 ~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~ 495 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKI-D-FDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQI-SWGVFDT 495 (606)
T ss_dssp TTCTTCCEEECTTSCCEE-C-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTT
T ss_pred hccccCCEEECcCCCCCc-c-chhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCcc-Chhhhcc
Confidence 478899999999875322 1 1223446789999999998 46653 4556778899999999999 66654 2445677
Q ss_pred CCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCC-CCCceeeeccc
Q 006331 532 CRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASIN-CLQNMTILHVV 594 (650)
Q Consensus 532 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~ 594 (650)
+++|++|++++| .++......+ ..+++|+.|++++|+++..... +..++ +|+.|++.+.+
T Consensus 496 l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 496 LHRLQLLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CTTCCEEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCC
T ss_pred cccCCEEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCC
Confidence 899999999999 6665432222 4568899999999998864433 67776 58998888653
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5e-29 Score=256.96 Aligned_cols=394 Identities=22% Similarity=0.293 Sum_probs=194.5
Q ss_pred CCCceeecCCCCCCChHHHH-HHHhccCcceeeccCCcCCChHhHH---HHHhhCCCCceeecccccccchHHHHHHHhh
Q 006331 125 RFLTEIDLSNGTEMGDAAAA-AIAEAKNLERLWLARCKLITDLGIG---RIAACCRKLKLLCLKWCIRVTDLGVELVALK 200 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (650)
++|++|+++++. +++.... .+..+++|++|++++|. +++.... .....+++|++|++++| .+.+.+...+...
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 345556665554 3333322 25556666666666665 4443222 22223566777777666 3444444444444
Q ss_pred CC----CCceeecCCCCCCcc----cccccccCCCccEEecCCCCCCChhHHHHHHhc----CcccceeecCCCCCCChH
Q 006331 201 CQ----EIRTLDLSYLPITEK----CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS----CKSLKALNLSKCQNISHV 268 (650)
Q Consensus 201 ~~----~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~ 268 (650)
++ +|++|++++|.+++. .+..+..+++|++|++++|. +++..+..+... .++|++|++++|. ++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAA 157 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHH
Confidence 44 577777777766642 24455566667777776654 343333333321 2346666665543 2221
Q ss_pred HHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhh----cCCCcEEecCCCCCCChH
Q 006331 269 GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW----HGSLKELSLSKCSGVTDE 344 (650)
Q Consensus 269 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~ 344 (650)
+. ..++..+..+++|++|++++|.+++.....+... .++|++|++++|. +...
T Consensus 158 ~~----------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 214 (461)
T 1z7x_W 158 SC----------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD 214 (461)
T ss_dssp GH----------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT
T ss_pred HH----------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH
Confidence 11 1334555666777777777777766655555432 3477777777764 3332
Q ss_pred H---HHHHHhcCCCCcEEEccCCCCccHHHHHHHHh----cCCCCCEEEcCCCccCCHHHHHHH---hhcCCCCcEEEec
Q 006331 345 E---LSFVVQSHKELRKLDITCCRKITYASINSITK----TCTSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDIT 414 (650)
Q Consensus 345 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~ 414 (650)
+ +...+..+++|++|++++|. +.+.....+.. .+++|+.|++++|. ++..+...+ ...+++|++|+++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECC
Confidence 2 34445556666666666664 34333322221 24455555555542 333321111 1134444444444
Q ss_pred CCccChhhHHhhhc-----CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeC
Q 006331 415 ENEVNDEGLKSISR-----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINI 489 (650)
Q Consensus 415 ~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 489 (650)
+|.+.+.+...+.. .++|++|++++| .+++.+... +......+++|++|++
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~-----------------------l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSH-----------------------FSSVLAQNRFLLELQI 348 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH-----------------------HHHHHHHCSSCCEEEC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHH-----------------------HHHHHhhCCCccEEEc
Confidence 44444433333322 134444444444 343332221 2223334455555555
Q ss_pred CCCCCCChHHHHHhhc-----CCCCcEEEecCCCCCChHH---HHHHHhcCCCccEEecCCCCCCChhhHHHHHHhC---
Q 006331 490 AYNERITDTSLISLSE-----CLRLKVLEIRGCPRISAIG---LSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYS--- 558 (650)
Q Consensus 490 ~~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--- 558 (650)
++| .+++.+...+.. .++|++|++++| .+++.+ ++..+..+++|++|++++| .+++.+...+...+
T Consensus 349 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 349 SNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQP 425 (461)
T ss_dssp CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTST
T ss_pred cCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccC
Confidence 555 355444444432 445555666555 455432 2333344566666666666 55555555544322
Q ss_pred -CcCCeEEeecCCCCcHH
Q 006331 559 -QNLKQINLSYCSVTDVG 575 (650)
Q Consensus 559 -~~L~~L~l~~~~i~~~~ 575 (650)
.+|+.|.+.++.+....
T Consensus 426 ~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp TCCCCEEECTTCCCCHHH
T ss_pred CcchhheeecccccCHHH
Confidence 23666666665555433
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.2e-29 Score=258.44 Aligned_cols=406 Identities=21% Similarity=0.301 Sum_probs=270.4
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCccc----ccccccCCCccEEecCCCCCCChhHHHHHHhcC
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC----LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC 251 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (650)
++|++|+++++ .+...+...+...+++|++|++++|.+++.. +..+..+++|++|++++|. +.+..+..+...+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 56777777766 4555554444456777777777777665432 2233445555555555533 3333333333333
Q ss_pred c----ccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhh-
Q 006331 252 K----SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW- 326 (650)
Q Consensus 252 ~----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~- 326 (650)
+ +|++|++++|. +...+. ..++..+..+++|++|++++|.+++..+..+...
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~----------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGC----------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGH----------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred hhCCCceeEEEccCCC-CCHHHH----------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence 3 35555554443 221110 2446667777788888888887776666655532
Q ss_pred ---cCCCcEEecCCCCCCChH---HHHHHHhcCCCCcEEEccCCCCccHHHHHHHHh----cCCCCCEEEcCCCccCCHH
Q 006331 327 ---HGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSITK----TCTSLTSLRMECCKLVSWE 396 (650)
Q Consensus 327 ---~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~ 396 (650)
.++|++|++++|. +... .+...+..+++|++|++++|. +.+.....+.. ..++|+.|++++|. ++..
T Consensus 138 ~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 214 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD 214 (461)
T ss_dssp TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT
T ss_pred hcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH
Confidence 3468888888774 4433 345566778888888888877 55544444433 35689999998875 4433
Q ss_pred H---HHHHhhcCCCCcEEEecCCccChhhHHhhh-----cCCCCCeeecCCCCCCChhhHHHHH---hcCccCcEEeccC
Q 006331 397 A---FVLIGQQCQYLEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYR 465 (650)
Q Consensus 397 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~ 465 (650)
+ +......+++|++|++++|.+.+.+...+. .+++|++|++++| .+++.+...+. ..+++|++|++++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 3 222233689999999999988877654443 4789999999999 89887754443 4689999999998
Q ss_pred CCCCCHHHHHHHHhc----CCCCCEEeCCCCCCCChHHH----HHhhcCCCCcEEEecCCCCCChHHHHHHHhc----CC
Q 006331 466 SSGITDVGVVAVSHG----CPSLEMINIAYNERITDTSL----ISLSECLRLKVLEIRGCPRISAIGLSAIAMG----CR 533 (650)
Q Consensus 466 ~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~ 533 (650)
| .+++.+...+... .++|++|++++| .+++... ..+..+++|++|++++| .+++.+...+... .+
T Consensus 294 n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 294 N-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp C-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTC
T ss_pred C-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCC
Confidence 6 4776666555543 369999999999 5877643 44556899999999999 8888766555432 57
Q ss_pred CccEEecCCCCCCChhhHHHHH---HhCCcCCeEEeecCCCCcHHHHHHhc-----CCCCCceeeecccCCC--HHHHHH
Q 006331 534 QLAMLDIKKCFNINDNGMIPLA---QYSQNLKQINLSYCSVTDVGLIALAS-----INCLQNMTILHVVGLT--PNGLVN 603 (650)
Q Consensus 534 ~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~-----l~~L~~L~l~~~~~~~--~~~~~~ 603 (650)
+|++|++++| .+++.+...+. ..+++|++|++++|++++.+...+.. ...|+.|.+.++.... ...+..
T Consensus 371 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 371 VLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred ceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 9999999999 88886665544 45799999999999999988776652 3468888888764432 233333
Q ss_pred HHHhCccccee
Q 006331 604 ALLRCQGLIKV 614 (650)
Q Consensus 604 ~~~~~~~L~~l 614 (650)
.....|+|+.+
T Consensus 450 l~~~~p~l~i~ 460 (461)
T 1z7x_W 450 LEKDKPSLRVI 460 (461)
T ss_dssp HHHHCTTSEEE
T ss_pred HhccCCCcEee
Confidence 45668888765
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.7e-32 Score=286.12 Aligned_cols=465 Identities=16% Similarity=0.147 Sum_probs=255.8
Q ss_pred cccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCC
Q 006331 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (650)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (650)
.+.|++|++++|..... ....+. .+++|++|++++|. ++..+...+..+++|++|++++|. +.......+. .+++
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLR-ACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFG-PLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTS-SCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHT-TCTT
T ss_pred CCCccEEECcCCccCcc-Chhhhh-cCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc-cCccCHHHhc-cCCC
Confidence 47888999988874322 212333 78888888888886 555555667888888888888886 3333333344 3788
Q ss_pred CceeecccccccchHHHHHHHhhCCCCceeecCCCC-CCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccce
Q 006331 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (650)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 256 (650)
|++|++++|.. ...+.......+++|++|++++|. +....+..+.++++|++|++++|...+ .....+.. +++|++
T Consensus 100 L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~-l~~L~~ 176 (549)
T 2z81_A 100 LKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKS-IRDIHH 176 (549)
T ss_dssp CCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTT-CSEEEE
T ss_pred CcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhhhhc-cccCce
Confidence 88888888743 221110111367888888888886 433333567778888888888765432 22333444 778888
Q ss_pred eecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhH---HHHhhcCCCCcEEEecCCcCCHhHHHHHH---hhcCCC
Q 006331 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL---SKCLHNFPMLQSIKFEDCPVARSGIKAIG---NWHGSL 330 (650)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L 330 (650)
|+++++.. ... ....+..+++|++|+++++ .+.+.. ......+++|+.|++.++.+++..+..+. ..+++|
T Consensus 177 L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 177 LTLHLSES-AFL-LEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEECSBS-TTH-HHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred EecccCcc-ccc-chhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 88877652 221 1233456778888888877 333211 11123456788888888877776665553 245677
Q ss_pred cEEecCCCCCCChHH----HHHHHhcCCCCcEEEccCCCCccHH---HHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhh
Q 006331 331 KELSLSKCSGVTDEE----LSFVVQSHKELRKLDITCCRKITYA---SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ 403 (650)
Q Consensus 331 ~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 403 (650)
+.+++++|....... ....+..+++++.+.+.++..-... .+..+....++|+.|++++|.. .. .+..+..
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~-ip~~~~~ 331 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FL-VPCSFSQ 331 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CC-CCHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-cc-CCHHHHh
Confidence 777777663211000 0011234566677766655311100 0111122345666666666442 21 1122222
Q ss_pred cCCCCcEEEecCCccChhhHH---hhhcCCCCCeeecCCCCCCChhhH-HHHHhcCccCcEEeccCCCCCCHHHHHHHHh
Q 006331 404 QCQYLEELDITENEVNDEGLK---SISRCSKLSSLKLGICSNITDEGL-KHVGSTCSMLKELDLYRSSGITDVGVVAVSH 479 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 479 (650)
.+++|++|++++|.+.+..+. .+..+++|+.|++++| .++.... ......+++|++|++++|. ++ .++....
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~ 407 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FH--PMPDSCQ 407 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CC--CCCSCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-Cc--cCChhhc
Confidence 456666666666666654432 2445666666666666 5554321 1233456666666666553 22 1222223
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQ 559 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 559 (650)
.+++|++|++++| .++..... -.++|++|++++| .+++. ...+++|++|++++| .++.... ...++
T Consensus 408 ~~~~L~~L~Ls~N-~l~~l~~~---~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~ 473 (549)
T 2z81_A 408 WPEKMRFLNLSST-GIRVVKTC---IPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTLPD---ASLFP 473 (549)
T ss_dssp CCTTCCEEECTTS-CCSCCCTT---SCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSCCC---GGGCT
T ss_pred ccccccEEECCCC-Ccccccch---hcCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcCCC---cccCc
Confidence 4456666666666 24321100 1245666666666 44442 134566666666666 4442221 12355
Q ss_pred cCCeEEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 560 NLKQINLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 560 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
+|+.|++++|++++..+..+..+++|+.|++.++
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 6666666666666555545555555655555543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.6e-31 Score=280.39 Aligned_cols=468 Identities=15% Similarity=0.124 Sum_probs=332.6
Q ss_pred CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (650)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (650)
+++++|+++++. +..... ..+..+++|++|++++|..... ....+. .+++|++|++++|. ++..+...+..++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGH---GDLRACANLQVLILKSSRINTI-EGDAFY-SLGSLEHLDLSDNH-LSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECS---STTSSCTTCCEEECTTSCCCEE-CTTTTT-TCTTCCEEECTTSC-CCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccCh---hhhhcCCcccEEECCCCCcCcc-Chhhcc-ccccCCEEECCCCc-cCccCHHHhccCC
Confidence 689999999987 433211 1457889999999999874432 223344 88999999999998 6666667799999
Q ss_pred CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccE
Q 006331 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (650)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 230 (650)
+|++|++++|.... .........+++|++|++++|...+..+...+ ..+++|++|++++|.+.+..+..++.+++|++
T Consensus 99 ~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccc-cchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999999997432 11112223489999999999865555443322 47999999999999999888999999999999
Q ss_pred EecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHH--HHhhccCcccchhhcccCcCCchhHHH----HhhcCCC
Q 006331 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGL--SSLIKGADYLQQLILAYSFWVSADLSK----CLHNFPM 304 (650)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~----~l~~l~~ 304 (650)
|+++++... .. ...+...+++|++|++++|. +....+ ......+++|+.|++.++ .+.+..+. .+..+++
T Consensus 177 L~l~~n~~~-~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 177 LTLHLSESA-FL-LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEECSBST-TH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTT
T ss_pred EecccCccc-cc-chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhcc
Confidence 999987543 22 33344448999999999976 222110 112345789999999988 45554443 4467889
Q ss_pred CcEEEecCCcCCHhH------HHHHHhhcCCCcEEecCCCCCCChH---HHHHHHhcCCCCcEEEccCCCCccHHHHHHH
Q 006331 305 LQSIKFEDCPVARSG------IKAIGNWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSI 375 (650)
Q Consensus 305 L~~L~l~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 375 (650)
|+.+++++|.+.+.. ...+ ..+++++.|.+.++...... .+.......++|+.|+++++. +.... ..+
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~ 329 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVV-SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSF 329 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCC-CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHH
T ss_pred ccccccccccccccccccccchhhh-hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHH
Confidence 999999998754311 1111 25678999998876422110 122334567899999999987 33222 233
Q ss_pred HhcCCCCCEEEcCCCccCCHHHHHHH--hhcCCCCcEEEecCCccChhhH--HhhhcCCCCCeeecCCCCCCChhhHHHH
Q 006331 376 TKTCTSLTSLRMECCKLVSWEAFVLI--GQQCQYLEELDITENEVNDEGL--KSISRCSKLSSLKLGICSNITDEGLKHV 451 (650)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~~~~l 451 (650)
...+++|+.|++++|. +....+... ...+++|+.|++++|.+..... ..+..+++|+.|++++| .++. +...
T Consensus 330 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~ 405 (549)
T 2z81_A 330 SQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDS 405 (549)
T ss_dssp HHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSC
T ss_pred HhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCcc--CChh
Confidence 3568999999999976 444433221 2378999999999999987653 56788999999999999 7763 2222
Q ss_pred HhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 006331 452 GSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMG 531 (650)
Q Consensus 452 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 531 (650)
...+++|+.|++++|. ++. +.. ...++|++|++++| .++.. ...+++|++|++++| .++.. +. ...
T Consensus 406 ~~~~~~L~~L~Ls~N~-l~~--l~~--~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N-~l~~i--p~-~~~ 471 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTG-IRV--VKT--CIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRN-KLKTL--PD-ASL 471 (549)
T ss_dssp CCCCTTCCEEECTTSC-CSC--CCT--TSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSS-CCSSC--CC-GGG
T ss_pred hcccccccEEECCCCC-ccc--ccc--hhcCCceEEECCCC-Chhhh----cccCChhcEEECCCC-ccCcC--CC-ccc
Confidence 2367899999999876 431 111 11369999999999 57653 257999999999999 77753 33 356
Q ss_pred CCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 532 CRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 532 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
+++|++|++++| .++...... ...+++|+.|++++|+++..
T Consensus 472 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 472 FPVLLVMKISRN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CTTCCEEECCSS-CCCCCCTTG-GGGCTTCCEEECCSSCBCCC
T ss_pred CccCCEEecCCC-ccCCcCHHH-HhcCcccCEEEecCCCccCC
Confidence 899999999999 676433222 24578999999999997643
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-33 Score=298.44 Aligned_cols=490 Identities=18% Similarity=0.182 Sum_probs=243.7
Q ss_pred ccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCC
Q 006331 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (650)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (650)
+.++.|+++++..... ....+. .+++|++|++++|. ++.++...+..+++|++|+++++. +.......+. .+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFF-SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-GLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTT-TCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-TCTTC
T ss_pred ccccEEEccCCccCcc-ChhHhh-CCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhc-Ccccc
Confidence 4455566655542211 111222 55666666666654 444443455566666666666654 2222112222 25666
Q ss_pred ceeecccccccchHHHHHHHhhCCCCceeecCCCCCCc-ccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc---
Q 006331 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL--- 254 (650)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--- 254 (650)
++|++++|. +...+...+ ..+++|++|++++|.+.. ..+..++++++|++|++++|... ......+.. +++|
T Consensus 103 ~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~~ 178 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV-LHQMPLL 178 (570)
T ss_dssp CEEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH-HHTCTTC
T ss_pred ccccccccc-cccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccc-hhccchh
Confidence 666666652 222221111 356666666666666654 24556666666777766665332 221122222 3344
Q ss_pred -ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcC---------CHhHHHHHH
Q 006331 255 -KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV---------ARSGIKAIG 324 (650)
Q Consensus 255 -~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---------~~~~~~~~~ 324 (650)
+.++++++. +.... +..+.. .+|+.|++.++.......+..+..+++++...+....+ ....+..+.
T Consensus 179 ~~~L~l~~n~-l~~~~-~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 179 NLSLDLSLNP-MNFIQ-PGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp CCEEECTTCC-CCEEC-TTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred hhhcccCCCC-ceecC-HHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 566666554 22111 122222 25666666665333334555555555555444432111 001011110
Q ss_pred hhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhc
Q 006331 325 NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ 404 (650)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 404 (650)
. -.++.+++.++..+.. .....+..+++|+.|+++++.. . .++.....+ +|+.|++++|...... . ..
T Consensus 256 -~-l~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l-~--~l~~~~~~~-~L~~L~l~~n~~~~l~---~--~~ 323 (570)
T 2z63_A 256 -N-LTIEEFRLAYLDYYLD-DIIDLFNCLTNVSSFSLVSVTI-E--RVKDFSYNF-GWQHLELVNCKFGQFP---T--LK 323 (570)
T ss_dssp -G-SEEEEEEEEETTEEES-CSTTTTGGGTTCSEEEEESCEE-C--SCCBCCSCC-CCSEEEEESCBCSSCC---B--CB
T ss_pred -c-cchhhhhhhcchhhhh-hchhhhcCcCcccEEEecCccc-h--hhhhhhccC-CccEEeeccCcccccC---c--cc
Confidence 0 1233444433311110 0112234556666666666542 2 111112233 6666666665432110 0 14
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhh--HHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEG--LKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
+++|+.|+++++.+...... ..+++|++|++++| .++... ...+ ..+++|+.|++++|.... . ......++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~-~~~~~L~~L~l~~n~l~~-~--~~~~~~l~ 396 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVIT-M--SSNFLGLE 396 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS-CCBEEEEEEHHH-HTCSCCCEEECCSCSEEE-E--EEEEETCT
T ss_pred ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC-ccCccccccccc-cccCccCEEECCCCcccc-c--cccccccC
Confidence 66777777776655433221 45667777777776 554332 1222 256777777776654221 1 11133567
Q ss_pred CCCEEeCCCCCCCChHHH-HHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcC
Q 006331 483 SLEMINIAYNERITDTSL-ISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNL 561 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 561 (650)
+|++|++++| .++.... ..+..+++|++|++++| .++.. .+..+..+++|++|++++| .+.+.........+++|
T Consensus 397 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 397 QLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNL 472 (570)
T ss_dssp TCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTC
T ss_pred CCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCC-cCccccchhhhhcccCC
Confidence 7777777776 3443322 34556777777777777 44432 2334456677777777777 44321111222446777
Q ss_pred CeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHH-HHHHhCcccceeeec-cccccCCCh
Q 006331 562 KQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLV-NALLRCQGLIKVKLN-ASFRPLLPQ 626 (650)
Q Consensus 562 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~l~l~-~~~~~~~p~ 626 (650)
+.|++++|++++..+..+..+++|++|++.++. + .+++ ..+..+++|+.|+++ |.+.+..|.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-L--KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C--SCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCc-C--CCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 777777777777666666777777777776542 1 1111 134467777888777 666666553
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.4e-33 Score=308.95 Aligned_cols=495 Identities=16% Similarity=0.070 Sum_probs=317.0
Q ss_pred ccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCC
Q 006331 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (650)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (650)
..+++++|++++|.... .....+. .+++|++|++++|.....++...+..+++|++|++++|. +.......+. .++
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~-~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQ-GLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSC-SCS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHcc-CCc
Confidence 56899999999987433 2223334 889999999999976777656788999999999999987 3333223333 489
Q ss_pred CCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccc-cccccCCCccEEecCCCCCCCh--hHHHHHHhcCcc
Q 006331 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL-PPVVKLQYLEDLVLEGCHGIDD--DGLASVEYSCKS 253 (650)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~ 253 (650)
+|++|++++|......+.......+++|++|++++|.+.+..+ ..++++++|++|++++|..... ..+..+.. ++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cc
Confidence 9999999998543322222112478999999999998876554 5688999999999999754322 22333322 78
Q ss_pred cceeecCCCCCCChHHHHHhhccCc------ccchhhcccCcCCchhHHHHhhc---CCCCcEEEecCC---------cC
Q 006331 254 LKALNLSKCQNISHVGLSSLIKGAD------YLQQLILAYSFWVSADLSKCLHN---FPMLQSIKFEDC---------PV 315 (650)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~l~~---l~~L~~L~l~~~---------~~ 315 (650)
|+.|+++++..... .+..+..++ .|++|+++++ .+....+..+.. ...++.+.+..+ .+
T Consensus 176 L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 176 LSFFSLAANSLYSR--VSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SCCCEECCSBSCCC--CCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred cceEECCCCccccc--cccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 99999998762221 112223333 3899999988 444444444332 246777776632 12
Q ss_pred CHhHHHHHHh-hcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCC
Q 006331 316 ARSGIKAIGN-WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394 (650)
Q Consensus 316 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (650)
.......+.. ..++|+.|+++++. +... ....+..+++|+.|++++|.. ... ....+..+++|+.|++++|.. +
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~Ls~N~l-~ 327 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGF-VFSL-NSRVFETLKDLKVLNLAYNKI-NKI-ADEAFYGLDNLQVLNLSYNLL-G 327 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCC-CCEE-CSCCSSSCCCCCEEEEESCCC-CEE-CTTTTTTCSSCCEEEEESCCC-S
T ss_pred CCCChhhhhccccCCccEEECCCCc-cccc-ChhhhhcCCCCCEEECCCCcC-CCC-ChHHhcCCCCCCEEECCCCCC-C
Confidence 2111111210 23688999988875 2221 123355778899999988863 221 122334678899999988653 2
Q ss_pred HHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHH
Q 006331 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGV 474 (650)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 474 (650)
......+. .+++|+.|++++|.+.......+..+++|+.|++++| .++... .+++|+.|++++|....
T Consensus 328 ~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N~l~~---- 395 (844)
T 3j0a_A 328 ELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGNKLVT---- 395 (844)
T ss_dssp CCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCS------SCCSCSEEEEESCCCCC----
T ss_pred ccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCccc------CCCCcchhccCCCCccc----
Confidence 21112222 6788999999998887776667778889999999988 666322 36888888888765321
Q ss_pred HHHHhcCCCCCEEeCCCCCCCChHH-HHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhH--
Q 006331 475 VAVSHGCPSLEMINIAYNERITDTS-LISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGM-- 551 (650)
Q Consensus 475 ~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-- 551 (650)
+.....+++.|++++| .++... ...+..+++|+.|++++| .++.......+..+++|+.|++++| .++....
T Consensus 396 --l~~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~ 470 (844)
T 3j0a_A 396 --LPKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETE 470 (844)
T ss_dssp --CCCCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSC
T ss_pred --ccccccccceeecccC-ccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCC-ccccccccc
Confidence 1223467888888888 465532 334457888888888888 5554322223345678888888888 5432110
Q ss_pred --HHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCCh
Q 006331 552 --IPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQ 626 (650)
Q Consensus 552 --~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~ 626 (650)
......+++|+.|++++|.++...+..+.++++|+.|++.+.. ..+++... -.++|+.|+++ |.+.+..|.
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~-~~~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR---LTVLSHND-LPANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC---CSSCCCCC-CCSCCCEEEEEEECCCCCCSC
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC---CCccChhh-hhccccEEECCCCcCCCCChh
Confidence 0111345788888888888877766667788888888887542 11111110 11678888888 555554443
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-32 Score=289.07 Aligned_cols=480 Identities=13% Similarity=0.086 Sum_probs=314.1
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
+++++|++++|. ++.+....+..+++|++|++++|. ++......+. .+++|++|++++|. +...+...+ ..+++|
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ-SLSHLSTLILTGNP-IQSLALGAF-SGLSSL 102 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTT-TCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-CCccCccccc-CchhCCEEeCcCCc-CCccCHhhh-cCcccc
Confidence 579999999887 666655678889999999999986 4433223333 38899999999884 433332222 378999
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCccc----
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL---- 280 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L---- 280 (650)
++|++++|.+.......++++++|++|++++|.......+..+.. +++|++|+++++. +.... +..+..+++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNK-IQSIY-CTDLRVLHQMPLLN 179 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSC-CCEEC-GGGGHHHHTCTTCC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCc-cceec-HHHccchhccchhh
Confidence 999999998876555568889999999999875433121333455 8899999998875 33211 2334445555
Q ss_pred chhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC--C------CCChHHHHHHHhc
Q 006331 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC--S------GVTDEELSFVVQS 352 (650)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~------~~~~~~~~~~~~~ 352 (650)
++++++++ .+....+..+... +|+.|+++++.............++.++...+... . .+.... +..
T Consensus 180 ~~L~l~~n-~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~----~~~ 253 (570)
T 2z63_A 180 LSLDLSLN-PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA----LEG 253 (570)
T ss_dssp CEEECTTC-CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT----TGG
T ss_pred hhcccCCC-CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh----hcc
Confidence 67788777 4444444444444 78888888876554444444446666665544311 0 011100 112
Q ss_pred CC--CCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCC
Q 006331 353 HK--ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (650)
Q Consensus 353 ~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (650)
++ .++.+.+.++..+... .......+++|+.|++++|.... .......+ +|++|++++|.+..... ..++
T Consensus 254 l~~l~l~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~ 325 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIER---VKDFSYNF-GWQHLELVNCKFGQFPT---LKLK 325 (570)
T ss_dssp GGGSEEEEEEEEETTEEESC-STTTTGGGTTCSEEEEESCEECS---CCBCCSCC-CCSEEEEESCBCSSCCB---CBCS
T ss_pred ccccchhhhhhhcchhhhhh-chhhhcCcCcccEEEecCccchh---hhhhhccC-CccEEeeccCcccccCc---cccc
Confidence 22 3556666655322221 22234567999999999875432 11112245 99999999998874322 4689
Q ss_pred CCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHH-HHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCC
Q 006331 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVG-VVAVSHGCPSLEMINIAYNERITDTSLISLSECLRL 509 (650)
Q Consensus 431 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (650)
+|+.|++++| .+...... ..+++|+.|++++|. ++..+ .......+++|++|++++| .++..... +..+++|
T Consensus 326 ~L~~L~l~~n-~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 326 SLKRLTFTSN-KGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-FLGLEQL 398 (570)
T ss_dssp SCCEEEEESC-BSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE-EETCTTC
T ss_pred ccCEEeCcCC-cccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-cccccccc-ccccCCC
Confidence 9999999998 44432221 478999999999875 33211 1233447899999999999 46554433 7789999
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc-HHHHHHhcCCCCCce
Q 006331 510 KVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD-VGLIALASINCLQNM 588 (650)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L 588 (650)
++|++++| .++.......+..+++|++|++++| .+...... ....+++|+.|++++|.+++ ..+..+..+++|+.|
T Consensus 399 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 399 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp CEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 99999999 5555322235678899999999999 55433221 22457999999999999873 445567889999999
Q ss_pred eeecccCCCHHHH-HHHHHhCcccceeeeccccccCCChh------HHHHhhhcccEE
Q 006331 589 TILHVVGLTPNGL-VNALLRCQGLIKVKLNASFRPLLPQS------FLHYMEAQNFLF 639 (650)
Q Consensus 589 ~l~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~p~~------~~~~~~~~~~~~ 639 (650)
++.++.- .++ +..+..+++|+.|+++++....+|+. .++.+++.+|.+
T Consensus 476 ~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 476 DLSQCQL---EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTSCC---CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcc---ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 9987632 122 23456899999999994444444432 345556666543
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=8e-33 Score=304.86 Aligned_cols=488 Identities=16% Similarity=0.090 Sum_probs=334.7
Q ss_pred hCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCC
Q 006331 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (650)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (650)
..++|++|++++|. ++......+..+++|++|++++|..........+. .+++|++|++++|. +.......+ ..++
T Consensus 22 lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-~L~~L~~L~Ls~N~-l~~~~p~~~-~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSSK-IYFLHPDAF-QGLF 97 (844)
T ss_dssp SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-SCTTCCEEECTTCC-CCEECTTSS-CSCS
T ss_pred CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhc-CCCCCCEEECCCCc-CcccCHhHc-cCCc
Confidence 34799999999987 66665567899999999999999654443233333 48999999999984 333322222 4799
Q ss_pred CCceeecCCCCCCcccccc--cccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccC--c
Q 006331 203 EIRTLDLSYLPITEKCLPP--VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA--D 278 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~ 278 (650)
+|++|++++|.+.+..+.. +.++++|++|++++|...+......+.. +++|++|++++|. +... .+..+..+ +
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~-i~~~-~~~~l~~l~~~ 174 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQ-IFLV-CEHELEPLQGK 174 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSC-CCCC-CSGGGHHHHHC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCc-CCee-CHHHcccccCC
Confidence 9999999999998766655 8899999999999986544322233455 9999999999875 2221 11223333 7
Q ss_pred ccchhhcccCcCCchhHHHHhhcCCC------CcEEEecCCcCCHhHHHHHHhh--cCCCcEEecCCCC--------CCC
Q 006331 279 YLQQLILAYSFWVSADLSKCLHNFPM------LQSIKFEDCPVARSGIKAIGNW--HGSLKELSLSKCS--------GVT 342 (650)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~--------~~~ 342 (650)
+|+.|+++++ .+....+..+..+++ |+.|++++|.++...+..+... ..+++.+.+..+. .+.
T Consensus 175 ~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 8999999988 455455554554444 9999999998776655544422 2567788776221 111
Q ss_pred hHHHHHHHhc--CCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccCh
Q 006331 343 DEELSFVVQS--HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (650)
Q Consensus 343 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (650)
... ...+.. .++|+.|+++++.... . ....+..+++|+.|++++|.. .......+. .+++|++|++++|.+..
T Consensus 254 ~~~-~~~f~~l~~~~L~~L~Ls~n~l~~-~-~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 254 DPD-QNTFAGLARSSVRHLDLSHGFVFS-L-NSRVFETLKDLKVLNLAYNKI-NKIADEAFY-GLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp TGG-GTTTTTTTTSCCCEEECTTCCCCE-E-CSCCSSSCCCCCEEEEESCCC-CEECTTTTT-TCSSCCEEEEESCCCSC
T ss_pred CCC-hhhhhccccCCccEEECCCCcccc-c-ChhhhhcCCCCCEEECCCCcC-CCCChHHhc-CCCCCCEEECCCCCCCc
Confidence 111 111222 3789999999887322 1 122345678999999998753 322222233 78999999999999988
Q ss_pred hhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH
Q 006331 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSL 500 (650)
Q Consensus 421 ~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 500 (650)
..+..+..+++|+.|++++| .++......+ ..+++|+.|++++|. ++. + ..+++|+.|++++| .++...
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~--i----~~~~~L~~L~l~~N-~l~~l~- 397 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNA-LTT--I----HFIPSIPDIFLSGN-KLVTLP- 397 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCC-SCC--C----SSCCSCSEEEEESC-CCCCCC-
T ss_pred cCHHHhcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCC-CCc--c----cCCCCcchhccCCC-Cccccc-
Confidence 77778889999999999999 7764433222 468999999999865 331 1 13789999999998 465321
Q ss_pred HHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH-----H
Q 006331 501 ISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV-----G 575 (650)
Q Consensus 501 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~-----~ 575 (650)
....+++.|++++| .+++......+..+++|+.|++++| .++..........+++|+.|++++|.++.. .
T Consensus 398 ---~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 398 ---KINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp ---CCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ---ccccccceeecccC-ccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccc
Confidence 12568999999999 7777655666778999999999999 665332221223468999999999998632 2
Q ss_pred HHHHhcCCCCCceeeecccCCCHHHHHH-HHHhCcccceeeeccccccCCCh----hHHHHhhhcccEEEec
Q 006331 576 LIALASINCLQNMTILHVVGLTPNGLVN-ALLRCQGLIKVKLNASFRPLLPQ----SFLHYMEAQNFLFLWR 642 (650)
Q Consensus 576 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~p~----~~~~~~~~~~~~~~~~ 642 (650)
+..+.++++|+.|++.++ ...+++. .+..+++|+.|++++|....+|. +.++.+++++|++...
T Consensus 473 ~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHN---YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP 541 (844)
T ss_dssp SSCSSCBCCEECCCCCHH---HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCC
T ss_pred hhhhcCcccccEEECCCC---cccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCC
Confidence 234567778888877754 2223322 35689999999999554444443 3467777777766443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=270.13 Aligned_cols=459 Identities=16% Similarity=0.159 Sum_probs=246.8
Q ss_pred eEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcc
Q 006331 74 TQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLE 153 (650)
Q Consensus 74 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 153 (650)
++++++++. ++. + .....++|++|++++|.... .....+. .+++|++|++++|. ++......+..+++|+
T Consensus 3 ~~l~ls~n~-l~~-----i-p~~~~~~L~~L~Ls~n~i~~-~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNG-LIH-----V-PKDLSQKTTILNISQNYISE-LWTSDIL-SLSKLRILIISHNR-IQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSC-CSS-----C-CCSCCTTCSEEECCSSCCCC-CCHHHHT-TCTTCCEEECCSSC-CCEEEGGGGTTCTTCC
T ss_pred ceEecCCCC-ccc-----c-cccccccccEEECCCCcccc-cChhhcc-ccccccEEecCCCc-cCCcChHHhhcccCCC
Confidence 567888776 332 2 12223889999999887433 2234444 88899999999887 5555446788888999
Q ss_pred eeeccCCcCCChHhHHHHHhhCCCCceeecccccccc-hHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCc--cE
Q 006331 154 RLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT-DLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL--ED 230 (650)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~ 230 (650)
+|++++|. ++..... .+++|++|++++|.... ..+..+ ..+++|++|++++|.+.+ ..+..+++| ++
T Consensus 73 ~L~Ls~N~-l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~--~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 73 YLDLSHNK-LVKISCH----PTVNLKHLDLSFNAFDALPICKEF--GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp EEECCSSC-CCEEECC----CCCCCSEEECCSSCCSSCCCCGGG--GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred EEecCCCc-eeecCcc----ccCCccEEeccCCccccccchhhh--ccCCcceEEEecCcccch---hhccccccceeeE
Confidence 99998886 3332111 47888888888874322 122222 478888888888887765 345556666 88
Q ss_pred EecCCCCCC-ChhHHHHHHhcCc-ccceeecCCCCCCChHHHHHhhccCcccchhhcccCc------CCchhHHHHhhcC
Q 006331 231 LVLEGCHGI-DDDGLASVEYSCK-SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------WVSADLSKCLHNF 302 (650)
Q Consensus 231 L~l~~~~~~-~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~l~~l 302 (650)
|++++|... ....+..+.. +. ....++++++.. ........+..+++|+.++++++. .+.+.. ..+..+
T Consensus 143 L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l 219 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNKE-FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTN 219 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTT-CCEEEEEEECCSSSC-CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGC
T ss_pred EEeecccccccccccccccc-cccceEEEEeccCcc-hhhhhhhhhhcccceeeccccccccccccceeecch-hhhccc
Confidence 888876541 1111121221 21 222455555442 111112335568889999988862 133333 367888
Q ss_pred CCCcEEEecCCcCCHhHHHHHHh--hcCCCcEEecCCCCCCChHHHHHHH-----hcCCCCcEEEccCCCC-ccHHHHHH
Q 006331 303 PMLQSIKFEDCPVARSGIKAIGN--WHGSLKELSLSKCSGVTDEELSFVV-----QSHKELRKLDITCCRK-ITYASINS 374 (650)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~-~~~~~~~~ 374 (650)
++|+.|++.++.+.+..+..+.. ..++|++|++++|..... ++..+ ..+++|+.+++.++.. +....+..
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ--LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC--CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc--cccchhhcccccCceeEeccccccceecchhhhhc
Confidence 89999999988887766554432 245888888877641100 11112 3556677777766653 01011111
Q ss_pred HHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChh-hHHHHHh
Q 006331 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GLKHVGS 453 (650)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~-~~~~l~~ 453 (650)
.. ..++|+.|++++|....... ...+++|++|++++|.+.+..+..+..+++|+.|++++| .++.. .......
T Consensus 298 ~~-~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 298 IF-SNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTT 371 (520)
T ss_dssp HH-HTCCCSEEEEESSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred cc-ccCceeEEEcCCCccccccc----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence 11 12456667666654322110 025566666666666666655555566666666666666 55532 1122223
Q ss_pred cCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 006331 454 TCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCR 533 (650)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (650)
.+++|+.|++++|. ++..........+++|++|++++| .++...+..+. ++|+.|++++| .++. ++..+..++
T Consensus 372 ~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N-~l~~--ip~~~~~l~ 444 (520)
T 2z7x_B 372 QMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSN-KIKS--IPKQVVKLE 444 (520)
T ss_dssp TCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSS-CCCC--CCGGGGGCT
T ss_pred hCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCC-cccc--cchhhhcCC
Confidence 55566666665543 221000001223455555555555 34332222111 45555555555 4442 222223455
Q ss_pred CccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 534 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
+|++|++++| .++..... ....+++|+.|++++|+++
T Consensus 445 ~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCCc
Confidence 5555555555 34322211 1123445555555555543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.2e-30 Score=267.15 Aligned_cols=456 Identities=13% Similarity=0.075 Sum_probs=314.7
Q ss_pred cceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCcee
Q 006331 102 RSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181 (650)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 181 (650)
++++++++....... . -.++|++|++++|. ++..+...+..+++|++|++++|. ++......+. .+++|++|
T Consensus 3 ~~l~ls~n~l~~ip~--~---~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK--D---LSQKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFK-FNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCC--S---CCTTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGT-TCTTCCEE
T ss_pred ceEecCCCCcccccc--c---ccccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhh-cccCCCEE
Confidence 457777766432221 1 22799999999998 666666789999999999999997 4433223333 38999999
Q ss_pred ecccccccchHHHHHHHhhCCCCceeecCCCCCCc-ccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc--ceee
Q 006331 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL--KALN 258 (650)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~ 258 (650)
++++| .+..++.. .+++|++|++++|.++. ..+..++++++|++|++++|.... .. +.. +++| ++|+
T Consensus 75 ~Ls~N-~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~-l~~L~L~~L~ 144 (520)
T 2z7x_B 75 DLSHN-KLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SS---VLP-IAHLNISKVL 144 (520)
T ss_dssp ECCSS-CCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GG---GGG-GTTSCEEEEE
T ss_pred ecCCC-ceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hh---ccc-cccceeeEEE
Confidence 99998 44444433 68999999999999986 456889999999999999976443 22 333 6777 9999
Q ss_pred cCCCCCCChHHHHHhhccCc-ccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCc-------CCHhHHHHHHhhcCCC
Q 006331 259 LSKCQNISHVGLSSLIKGAD-YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-------VARSGIKAIGNWHGSL 330 (650)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L 330 (650)
+++|........+..+..+. +...+++.++..........+..+++|+.+++++|. +.+.. ..+. .+++|
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~-~l~~L 222 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQ-TNPKL 222 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGG-GCTTC
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhc-cccch
Confidence 99876210111122333333 233455566633322233456678999999999986 33332 2444 78899
Q ss_pred cEEecCCCCCCChHHHHHHHh--cCCCCcEEEccCCCCccHHHHHHHH-----hcCCCCCEEEcCCCcc-CCHHHHHHHh
Q 006331 331 KELSLSKCSGVTDEELSFVVQ--SHKELRKLDITCCRKITYASINSIT-----KTCTSLTSLRMECCKL-VSWEAFVLIG 402 (650)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~-~~~~~~~~~~ 402 (650)
+.|+++++. +....+..... ..++|+.|++++|.. .. ..+... ..+++|+.++++++.. +....+....
T Consensus 223 ~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~ 299 (520)
T 2z7x_B 223 SNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKL-QG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299 (520)
T ss_dssp CEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEE-ES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred hhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccc-cC-ccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence 999998874 44433333322 257999999998762 21 111111 4577888888887654 1112333332
Q ss_pred hcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
..++|+.|+++++.+.... ....+++|++|++++| .++......+ ..+++|+.|++++|....-..++.....++
T Consensus 300 -~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 300 -SNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp -HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred -ccCceeEEEcCCCcccccc--chhhCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCC
Confidence 2367999999999876543 1257899999999999 7876444433 478999999999876444334556667899
Q ss_pred CCCEEeCCCCCCCCh-HHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcC-CCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 483 SLEMINIAYNERITD-TSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGC-RQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
+|++|++++| .++. .....+..+++|++|++++| .+++... ..+ ++|+.|++++| .++.... ....+++
T Consensus 375 ~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~ 445 (520)
T 2z7x_B 375 SLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKSIPK--QVVKLEA 445 (520)
T ss_dssp TCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCCCCG--GGGGCTT
T ss_pred CCCEEECCCC-cCCcccccchhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-cccccch--hhhcCCC
Confidence 9999999999 4765 44445667899999999999 6765321 233 69999999999 7764332 1236899
Q ss_pred CCeEEeecCCCCcHHHHHHhcCCCCCceeeeccc
Q 006331 561 LKQINLSYCSVTDVGLIALASINCLQNMTILHVV 594 (650)
Q Consensus 561 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 594 (650)
|+.|++++|+++......+..+++|++|++.+.+
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 9999999999997655557889999999998653
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=1.6e-27 Score=234.56 Aligned_cols=293 Identities=18% Similarity=0.282 Sum_probs=158.4
Q ss_pred CCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhh--cccccccchhhHHHHHhcC--CCceEeccCCCCC
Q 006331 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH--RKILKPLCAETLSRTSARY--PFITQLDLSLCPR 83 (650)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~--~~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~ 83 (650)
....|+.||+||+.+||+ ||+ ..|+.+++.|||+|+++.... +..+.......-+..+..+ ++++.++++++.
T Consensus 5 ~~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~- 81 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSF- 81 (336)
T ss_dssp --CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCE-
T ss_pred ccCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcc-
Confidence 456789999999999999 999 999999999999999987532 1111111111113334444 566666666554
Q ss_pred CCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCC
Q 006331 84 ANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI 163 (650)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 163 (650)
+..... ....+++|++|++++|. +....+......+++|++|++++|. ++......+..+++|++|++++|..+
T Consensus 82 l~~~~~----~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 82 MDQPLA----EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp ECSCCC----SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred ccccch----hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 221111 23345566666666555 3333344444456666666666554 44444445555566666666655444
Q ss_pred ChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCC-CCceeecCCCCCCcccccccccCCCccEEecCCCC-CCCh
Q 006331 164 TDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ-EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH-GIDD 241 (650)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~ 241 (650)
++..+......+++|++|++++|..++..+.......++ +|++|++++| . .+.+
T Consensus 156 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~------------------------~~~~~~ 211 (336)
T 2ast_B 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY------------------------RKNLQK 211 (336)
T ss_dssp CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC------------------------GGGSCH
T ss_pred CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC------------------------cccCCH
Confidence 544444444445555555555553343332222223444 5555555554 3 2332
Q ss_pred hHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHH
Q 006331 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK 321 (650)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 321 (650)
..++.....+++|++|++++|..++... ...+..+++|++|++++|..+.+.....+..+++|+.|++++| +++..+.
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~ 289 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ 289 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH
Confidence 2233333335555555555554333322 2234455666666666654444444445666777777877777 6666666
Q ss_pred HHHhhcCCCcEEecCCC
Q 006331 322 AIGNWHGSLKELSLSKC 338 (650)
Q Consensus 322 ~~~~~~~~L~~L~l~~~ 338 (650)
.+...++.|+ ++++
T Consensus 290 ~l~~~l~~L~---l~~n 303 (336)
T 2ast_B 290 LLKEALPHLQ---INCS 303 (336)
T ss_dssp HHHHHSTTSE---ESCC
T ss_pred HHHhhCcceE---Eecc
Confidence 5553444444 5544
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.2e-30 Score=275.64 Aligned_cols=351 Identities=15% Similarity=0.164 Sum_probs=196.8
Q ss_pred hhCCCCceeecCCCCCCcc-----------------cccccc--cCCCccEEecCCCCCCChhHHHHHHhcCcccceeec
Q 006331 199 LKCQEIRTLDLSYLPITEK-----------------CLPPVV--KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259 (650)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 259 (650)
.++++|++|++++|.+++. .|..++ ++++|++|++++|...+.. +..+.. +++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~-l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKA-LPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTT-CSSCCEEEC
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-hHHHhc-CCCCCEEEC
Confidence 3667777777777776653 666666 6777777777776544432 233343 667777777
Q ss_pred CCCCCCChHHHHHhhccC------cccchhhcccCcCCchhHHH--HhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCc
Q 006331 260 SKCQNISHVGLSSLIKGA------DYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (650)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 331 (650)
++|..+....++..+..+ ++|++|++++| .+. .+|. .+..+++|++|++++|.+.+..+ .+. .+++|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~ 356 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLA 356 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEES
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCC
Confidence 766433332344444443 67777777766 344 5555 66677777777777776663333 333 556677
Q ss_pred EEecCCCCCCChHHHHHHHhcCCC-CcEEEccCCCCccHHHHHHHHhc--CCCCCEEEcCCCccCCHHHHHHHh------
Q 006331 332 ELSLSKCSGVTDEELSFVVQSHKE-LRKLDITCCRKITYASINSITKT--CTSLTSLRMECCKLVSWEAFVLIG------ 402 (650)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~------ 402 (650)
+|++++|. +. .++..+..+++ |+.|++++|.. .. ++..... +++|+.|++++|... ...+..+.
T Consensus 357 ~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l-~~--lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 357 SLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKL-KY--IPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTP 429 (636)
T ss_dssp EEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCC-SS--CCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSC
T ss_pred EEECCCCc-cc--cccHhhhhhcccCcEEEccCCcC-cc--cchhhhhcccCccCEEECcCCcCC-Ccchhhhccccccc
Confidence 77776653 22 22223445566 77777766652 21 1111111 236677777665432 11111111
Q ss_pred hcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHH------hcCccCcEEeccCCCCCCHHHHHH
Q 006331 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG------STCSMLKELDLYRSSGITDVGVVA 476 (650)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~~~ 476 (650)
-.+++|+.|++++|.+.......+..+++|+.|++++| .++......+. +.+++|+.|++++|. ++ .++.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~ 505 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LT--KLSD 505 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CC--BCCG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CC--ccCh
Confidence 03457777777777776544444555777777777777 55522111110 012277777777654 33 2333
Q ss_pred HHh--cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC-----CCChHHHHHHHhcCCCccEEecCCCCCCChh
Q 006331 477 VSH--GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP-----RISAIGLSAIAMGCRQLAMLDIKKCFNINDN 549 (650)
Q Consensus 477 ~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 549 (650)
... .+++|++|++++| .++. .+..+..+++|+.|++++|. .+... ++..+..+++|++|++++| .++..
T Consensus 506 ~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~i 581 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSN-DIRKV 581 (636)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred hhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCC-cCCcc
Confidence 332 5677777777777 4655 34556667777777775432 22221 3344556777777888777 55433
Q ss_pred hHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 550 GMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 550 ~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
... ..++|+.|++++|++...
T Consensus 582 p~~----~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 582 NEK----ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp CSC----CCTTCCEEECCSCTTCEE
T ss_pred CHh----HhCcCCEEECcCCCCccc
Confidence 221 236777888887766543
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.8e-30 Score=276.42 Aligned_cols=315 Identities=14% Similarity=0.100 Sum_probs=132.4
Q ss_pred HHHHhh--cCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcC------CCCcEEEccCCCC
Q 006331 295 LSKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH------KELRKLDITCCRK 366 (650)
Q Consensus 295 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~ 366 (650)
+|..+. .+++|++|++++|.+.+..+..+. .+++|++|++++|..++...++..+..+ ++|+.|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444444 555555555555554444443343 4555555555554323321233333332 5555555555542
Q ss_pred ccHHHHHH--HHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCC-CCeeecCCCCCC
Q 006331 367 ITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK-LSSLKLGICSNI 443 (650)
Q Consensus 367 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~i 443 (650)
. .++. .+..+++|+.|++++|..... .. .+. .+++|++|++++|.+. ..+..+..+++ |++|++++| .+
T Consensus 318 -~--~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N-~l 389 (636)
T 4eco_A 318 -K--TFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN-KL 389 (636)
T ss_dssp -S--SCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS-CC
T ss_pred -C--ccCchhhhccCCCCCEEeCcCCcCccc-hh-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC-cC
Confidence 2 1111 233455555555555432101 11 122 4455555555555544 22333444555 555555555 44
Q ss_pred ChhhHHHHH-hcCccCcEEeccCCCCCCHHHHHHHHh-------cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEec
Q 006331 444 TDEGLKHVG-STCSMLKELDLYRSSGITDVGVVAVSH-------GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIR 515 (650)
Q Consensus 444 ~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 515 (650)
+.. ...+. ..+++|+.|++++|.... . .+.... .+++|++|++++| .++......+..+++|++|+++
T Consensus 390 ~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-~-~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 KYI-PNIFDAKSVSVMSAIDFSYNEIGS-V-DGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SSC-CSCCCTTCSSCEEEEECCSSCTTT-T-TTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECC
T ss_pred ccc-chhhhhcccCccCEEECcCCcCCC-c-chhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECC
Confidence 311 11110 012245555555543211 0 000011 2335555555555 3443333333445555555555
Q ss_pred CCCCCChHHHHHHHhcC-------CCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCce
Q 006331 516 GCPRISAIGLSAIAMGC-------RQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNM 588 (650)
Q Consensus 516 ~~~~l~~~~~~~~~~~~-------~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 588 (650)
+| .++... ...+... ++|++|++++| .++..........+++|+.|++++|+++. .+..+..+++|+.|
T Consensus 466 ~N-~l~~i~-~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 466 GN-MLTEIP-KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp SS-CCSBCC-SSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred CC-CCCCcC-HHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 55 343211 0111111 15555555555 44422111000134555555555555554 33444455555555
Q ss_pred eeeccc---CCC-HHHHHHHHHhCcccceeeeccccccCCCh
Q 006331 589 TILHVV---GLT-PNGLVNALLRCQGLIKVKLNASFRPLLPQ 626 (650)
Q Consensus 589 ~l~~~~---~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~p~ 626 (650)
++.++. ++. ...++..+..+++|+.|+++++..+.+|.
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH
Confidence 554321 110 11122233355555555555333344444
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.1e-29 Score=268.82 Aligned_cols=356 Identities=16% Similarity=0.154 Sum_probs=235.4
Q ss_pred hhCCCCceeecCCCCCCc-----------------ccccccc--cCCCccEEecCCCCCCChhHHHHHHhcCcccceeec
Q 006331 199 LKCQEIRTLDLSYLPITE-----------------KCLPPVV--KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259 (650)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 259 (650)
..+++|++|++++|.+++ ..|..++ ++++|+.|++++|...+.. +..+.. +++|+.|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~-L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYD-LPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGG-CSSCCEEEC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhC-CCCCCEEEC
Confidence 467888888888888776 2677766 7888888888887654443 234444 788888888
Q ss_pred CCCCCCChHHHHHhhcc-------CcccchhhcccCcCCchhHHH--HhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCC
Q 006331 260 SKCQNISHVGLSSLIKG-------ADYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (650)
Q Consensus 260 ~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 330 (650)
++|..+....++..+.. +++|+.|++++| .+. .+|. .+..+++|+.|++++|.++ ..+ .+. .+++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcc
Confidence 87753343234443333 448888888887 455 6666 7888888888888888777 333 444 67788
Q ss_pred cEEecCCCCCCChHHHHHHHhcCCC-CcEEEccCCCCccHHHHHHHHhcC--CCCCEEEcCCCccCCHHH-H-HHHh-hc
Q 006331 331 KELSLSKCSGVTDEELSFVVQSHKE-LRKLDITCCRKITYASINSITKTC--TSLTSLRMECCKLVSWEA-F-VLIG-QQ 404 (650)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~-~-~~~~-~~ 404 (650)
+.|++++|. +. .++..+..+++ |+.|++++|. +. .++...... ++|+.|++++|....... + ..+. -.
T Consensus 598 ~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 598 TDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK-LK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC-CC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred eEEECcCCc-cc--cchHHHhhccccCCEEECcCCC-CC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 888888775 32 23333556677 8888888876 33 122222222 348888888875422100 0 0000 02
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHH-------hcCccCcEEeccCCCCCCHHHHHHH
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG-------STCSMLKELDLYRSSGITDVGVVAV 477 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~-------~~~~~L~~L~l~~~~~~~~~~~~~~ 477 (650)
+++|+.|++++|.+.......+..+++|+.|++++| .++.... .+. .++++|+.|++++|. ++ .++..
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~~ 746 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSDD 746 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCGG
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccCh-HHhccccccccccCCccEEECCCCC-Cc--cchHH
Confidence 458999999999888655555667899999999998 7662221 111 123489999999874 44 23333
Q ss_pred Hh--cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC-----CCChHHHHHHHhcCCCccEEecCCCCCCChhh
Q 006331 478 SH--GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP-----RISAIGLSAIAMGCRQLAMLDIKKCFNINDNG 550 (650)
Q Consensus 478 ~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 550 (650)
.. .+++|+.|++++| .++. .+..+..+++|+.|++++|+ .+... ++..+..+++|+.|++++| .++...
T Consensus 747 l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N-~L~~Ip 822 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSN-DIRKVD 822 (876)
T ss_dssp GSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSS-CCCBCC
T ss_pred hhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCC-CCCccC
Confidence 33 6899999999998 5766 34567789999999998743 22222 3456678899999999999 665433
Q ss_pred HHHHHHhCCcCCeEEeecCCCCcHHHHHHh
Q 006331 551 MIPLAQYSQNLKQINLSYCSVTDVGLIALA 580 (650)
Q Consensus 551 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 580 (650)
.. ..++|+.|++++|++....+..+.
T Consensus 823 ~~----l~~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 823 EK----LTPQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp SC----CCSSSCEEECCSCTTCEEECGGGH
T ss_pred Hh----hcCCCCEEECCCCCCCccChHHcc
Confidence 22 247999999999998776544433
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1e-28 Score=266.47 Aligned_cols=415 Identities=13% Similarity=0.110 Sum_probs=240.6
Q ss_pred CCCceeecCCCCCCcccccccccCCCccEEec-CCCCCCCh---------------------------------------
Q 006331 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVL-EGCHGIDD--------------------------------------- 241 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~--------------------------------------- 241 (650)
.+++.|+++++.+.+..++.++++++|+.|++ ++|...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999999888888888999999999999 44421000
Q ss_pred hHHHHHHh----------cCcccceeecCCC-CCCChHHHHHhhccCcccchhhcccCcCCch-----------------
Q 006331 242 DGLASVEY----------SCKSLKALNLSKC-QNISHVGLSSLIKGADYLQQLILAYSFWVSA----------------- 293 (650)
Q Consensus 242 ~~~~~~~~----------~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------- 293 (650)
.....+.. ....++.+.+... ..+.. ++..+..+++|++|+++++ .+.+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccc
Confidence 00000000 0011122222210 00111 3555677777777777777 4554
Q ss_pred hHHHHhh--cCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhc-------CCCCcEEEccCC
Q 006331 294 DLSKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS-------HKELRKLDITCC 364 (650)
Q Consensus 294 ~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~ 364 (650)
.+|..++ .+++|++|++++|.+....+..+. .+++|+.|++++|..+....++..+.. +++|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 2666665 777788888877776666555555 677788888877753443223333333 347788888777
Q ss_pred CCccHHHHHH--HHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCC-CCeeecCCCC
Q 006331 365 RKITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK-LSSLKLGICS 441 (650)
Q Consensus 365 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~ 441 (650)
.. . .++. .+..+++|+.|++++|... . ++.+. .+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 559 ~L-~--~ip~~~~l~~L~~L~~L~Ls~N~l~--~-lp~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N- 629 (876)
T 4ecn_A 559 NL-E--EFPASASLQKMVKLGLLDCVHNKVR--H-LEAFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN- 629 (876)
T ss_dssp CC-C--BCCCHHHHTTCTTCCEEECTTSCCC--B-CCCCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS-
T ss_pred cC-C--ccCChhhhhcCCCCCEEECCCCCcc--c-chhhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC-
Confidence 63 3 2222 4456777888888776532 1 11233 6677888888877776 44455666777 888888877
Q ss_pred CCChhhHHHHHhc--CccCcEEeccCCCCCCHHHHHHHH---h--cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEe
Q 006331 442 NITDEGLKHVGST--CSMLKELDLYRSSGITDVGVVAVS---H--GCPSLEMINIAYNERITDTSLISLSECLRLKVLEI 514 (650)
Q Consensus 442 ~i~~~~~~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 514 (650)
.++.. ...... .++|+.|++++|..... ++.+. . .+++|+.|++++| .++......+..+++|+.|++
T Consensus 630 ~L~~l--p~~~~~~~~~~L~~L~Ls~N~l~g~--ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 630 KLKYI--PNIFNAKSVYVMGSVDFSYNKIGSE--GRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CCCSC--CSCCCTTCSSCEEEEECCSSCTTTT--SSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEEC
T ss_pred CCCcC--chhhhccccCCCCEEECcCCcCCCc--cccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEEC
Confidence 55521 111112 23477788877643220 01000 0 2347778888877 466555555556778888888
Q ss_pred cCCCCCChHHHHHHHh--------cCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCC
Q 006331 515 RGCPRISAIGLSAIAM--------GCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQ 586 (650)
Q Consensus 515 ~~~~~l~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 586 (650)
++| .++.. +..+. ++++|+.|++++| .++..........+++|+.|++++|+++. .+..+..+++|+
T Consensus 705 s~N-~L~~i--p~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~ 779 (876)
T 4ecn_A 705 SNN-LMTSI--PENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779 (876)
T ss_dssp CSC-CCSCC--CTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC
T ss_pred CCC-cCCcc--ChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCC
Confidence 877 55532 22111 1237888888887 56532211111256778888888887776 345566777788
Q ss_pred ceeeeccc----CCCHHHHHHHHHhCcccceeeeccccccCCChh---HHHHhhhcccEE
Q 006331 587 NMTILHVV----GLTPNGLVNALLRCQGLIKVKLNASFRPLLPQS---FLHYMEAQNFLF 639 (650)
Q Consensus 587 ~L~l~~~~----~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~p~~---~~~~~~~~~~~~ 639 (650)
.|++.+++ +.....++..+..+++|+.|+++++..+.+|.. .++.+++++|.+
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCC
Confidence 77776532 111122333455778888888884444666653 355555666543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.3e-25 Score=226.84 Aligned_cols=340 Identities=19% Similarity=0.197 Sum_probs=166.8
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++++.|++.++. +...+. ...+++|++|++++|.+.+..+ +.++++|++|++++|....... +.. +++|
T Consensus 45 l~~l~~L~l~~~~-i~~l~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~-l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSIDG---VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LAN-LTNL 114 (466)
T ss_dssp HHTCCEEECCSSC-CCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTT-CTTC
T ss_pred hccccEEecCCCC-CccCcc---hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcC-CCCC
Confidence 4577888887763 333321 1367788888888887764332 7777888888887765433221 333 7777
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
++|++++|. +.... .+..+++|++|++++| .+.+ . ..+..+++|++|++.++ +.... .+. .+++|++|+
T Consensus 115 ~~L~L~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~-~-~~~~~l~~L~~L~l~~~-~~~~~--~~~-~l~~L~~L~ 183 (466)
T 1o6v_A 115 TGLTLFNNQ-ITDID---PLKNLTNLNRLELSSN-TISD-I-SALSGLTSLQQLSFGNQ-VTDLK--PLA-NLTTLERLD 183 (466)
T ss_dssp CEEECCSSC-CCCCG---GGTTCTTCSEEEEEEE-EECC-C-GGGTTCTTCSEEEEEES-CCCCG--GGT-TCTTCCEEE
T ss_pred CEEECCCCC-CCCCh---HHcCCCCCCEEECCCC-ccCC-C-hhhccCCcccEeecCCc-ccCch--hhc-cCCCCCEEE
Confidence 777777764 33221 1556666666666665 2322 1 23555666666666432 22111 122 455555555
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEec
Q 006331 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (650)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (650)
+++|. +.... .+..+++|+.|++++|....... .. .+++|+.|+++
T Consensus 184 l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----~~--------------------------~l~~L~~L~l~ 229 (466)
T 1o6v_A 184 ISSNK-VSDIS---VLAKLTNLESLIATNNQISDITP----LG--------------------------ILTNLDELSLN 229 (466)
T ss_dssp CCSSC-CCCCG---GGGGCTTCSEEECCSSCCCCCGG----GG--------------------------GCTTCCEEECC
T ss_pred CcCCc-CCCCh---hhccCCCCCEEEecCCccccccc----cc--------------------------ccCCCCEEECC
Confidence 55553 22111 13344555555554443211111 22 34445555555
Q ss_pred CCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCC
Q 006331 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNER 494 (650)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 494 (650)
+|.+.+. ..+..+++|+.|++++| .++.... ...+++|+.|++++|.... . .. ...+++|++|++++| .
T Consensus 230 ~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~-~--~~-~~~l~~L~~L~L~~n-~ 298 (466)
T 1o6v_A 230 GNQLKDI--GTLASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQISN-I--SP-LAGLTALTNLELNEN-Q 298 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCCC-C--GG-GTTCTTCSEEECCSS-C
T ss_pred CCCcccc--hhhhcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCCccCc-c--cc-ccCCCccCeEEcCCC-c
Confidence 5444432 23344455555555555 3332221 2244555555555443211 1 11 234455555555555 2
Q ss_pred CChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcH
Q 006331 495 ITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDV 574 (650)
Q Consensus 495 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 574 (650)
+++... +..+++|+.|++++| .+++... +..+++|++|++++| .+++.. ....+++|+.|++++|++++.
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBC
T ss_pred ccCchh--hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccCcc
Confidence 433221 445555555555555 4443211 345555555555555 443321 123345555555555555554
Q ss_pred HHHHHhcCCCCCceeeec
Q 006331 575 GLIALASINCLQNMTILH 592 (650)
Q Consensus 575 ~~~~~~~l~~L~~L~l~~ 592 (650)
.+ +..+++|+.|.+.+
T Consensus 369 ~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 369 TP--LANLTRITQLGLND 384 (466)
T ss_dssp GG--GTTCTTCCEEECCC
T ss_pred ch--hhcCCCCCEEeccC
Confidence 43 45555555555543
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.9e-28 Score=254.55 Aligned_cols=462 Identities=15% Similarity=0.091 Sum_probs=229.8
Q ss_pred CceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccC
Q 006331 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (650)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 151 (650)
..++++++++. ++. + .....++|++|++++|...... ...+. .+++|++|++++|. ++......+..+++
T Consensus 32 ~~~~l~ls~~~-L~~-----i-p~~~~~~L~~L~Ls~N~i~~~~-~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRN-LTH-----V-PKDLPPRTKALSLSQNSISELR-MPDIS-FLSELRVLRLSHNR-IRSLDFHVFLFNQD 101 (562)
T ss_dssp -CCEEECTTSC-CCS-----C-CTTSCTTCCEEECCSSCCCCCC-GGGTT-TCTTCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred CCcEEEcCCCC-Ccc-----C-CCCCCCCcCEEECCCCCccccC-hhhhc-cCCCccEEECCCCC-CCcCCHHHhCCCCC
Confidence 34788888776 332 2 1222378888888887743322 12333 77888888888876 55555466778888
Q ss_pred cceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEE
Q 006331 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDL 231 (650)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 231 (650)
|++|++++|. ++..... .+++|++|++++|. +...+.......+++|++|++++|.+....+..+.++ +|++|
T Consensus 102 L~~L~Ls~N~-l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L 174 (562)
T 3a79_B 102 LEYLDVSHNR-LQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCI 174 (562)
T ss_dssp CCEEECTTSC-CCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEE
T ss_pred CCEEECCCCc-CCccCcc----ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEE
Confidence 8888888876 3322111 47788888888774 3322210011367788888888877765333333333 33788
Q ss_pred ecCCCCCC-ChhHHHHHHhcCcccc----eeecCCCCCCChHHHHHhhccCcccchhhcccCcCC---chhHHHHhhcCC
Q 006331 232 VLEGCHGI-DDDGLASVEYSCKSLK----ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV---SADLSKCLHNFP 303 (650)
Q Consensus 232 ~l~~~~~~-~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~l~ 303 (650)
++++|... ....... ++.+. .++++++.. ........+..+++|+.++++++... .......+..++
T Consensus 175 ~L~~n~l~~~~~~~~~----l~~l~~~~l~l~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 175 LLDLVSYHIKGGETES----LQIPNTTVLHLVFHPNSL-FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp EEEESSCCCCSSSCCE----EEECCEEEEEEEECSSSC-CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred EeecccccccccCccc----ccccCcceEEEEecCccc-hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 87776441 1111111 22211 334444331 11111122345677777777765211 112334566777
Q ss_pred CCcEEEecCCcCCHhHHHHHHh--hcCCCcEEecCCCCCCChHHHHHHH-----hcCCCCcEEEccCCCC-ccHHHHHHH
Q 006331 304 MLQSIKFEDCPVARSGIKAIGN--WHGSLKELSLSKCSGVTDEELSFVV-----QSHKELRKLDITCCRK-ITYASINSI 375 (650)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~-~~~~~~~~~ 375 (650)
+|+.+++.++.+.+..+..+.. ..++|++|++++|..... ++..+ ..++.|+.+++..+.. +........
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER--IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC--CCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc--ccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 8888888777776554443321 234777777776531100 00000 1223333333333321 111122222
Q ss_pred HhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhh-HHHHHhc
Q 006331 376 TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEG-LKHVGST 454 (650)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~-~~~l~~~ 454 (650)
. ...+|+.|++++|...... ....+++|++|++++|.+.+..+..+..+++|+.|++++| .++... .......
T Consensus 328 ~-~~~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 328 F-AEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKN 401 (562)
T ss_dssp H-HTCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTT
T ss_pred h-ccCcceEEEccCCCccccc----CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcC
Confidence 1 1245666666665432211 0024566666666666666655555666666666666666 555321 1222235
Q ss_pred CccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 006331 455 CSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQ 534 (650)
Q Consensus 455 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 534 (650)
+++|+.|++++|. ++..........+++|++|++++| .++...+..+. ++|++|++++| .++. ++..+..+++
T Consensus 402 l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~--ip~~~~~l~~ 474 (562)
T 3a79_B 402 MSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMS--IPKDVTHLQA 474 (562)
T ss_dssp CTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCC--CCTTTTSSCC
T ss_pred CCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcc--cChhhcCCCC
Confidence 5666666666543 221000011223455666666555 34432221111 45555555555 4443 2222234555
Q ss_pred ccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 535 LAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 535 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
|++|++++| .++..... ....+++|+.|++++|++.
T Consensus 475 L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 475 LQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBC
T ss_pred CCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcC
Confidence 555555555 44322211 1123455555555555544
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7e-25 Score=225.22 Aligned_cols=347 Identities=18% Similarity=0.193 Sum_probs=219.4
Q ss_pred HhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCC
Q 006331 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (650)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 226 (650)
..+++|+.|++.++.... +..+. .+++|++|++++|. +...+. ...+++|++|++++|.+.+..+ +++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~---l~~~~-~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS---IDGVE-YLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HHHHTCCEEECCSSCCCC---CTTGG-GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred hHhccccEEecCCCCCcc---Ccchh-hhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh--hcCCC
Confidence 456899999999886432 22333 48999999999984 444333 2589999999999999875443 88999
Q ss_pred CccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCc
Q 006331 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (650)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 306 (650)
+|++|++++|...... .+.. +++|++|++++|. +... ..+..+++|++|++.++ +... ..+..+++|+
T Consensus 113 ~L~~L~L~~n~l~~~~---~~~~-l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~~--~~~~--~~~~~l~~L~ 180 (466)
T 1o6v_A 113 NLTGLTLFNNQITDID---PLKN-LTNLNRLELSSNT-ISDI---SALSGLTSLQQLSFGNQ--VTDL--KPLANLTTLE 180 (466)
T ss_dssp TCCEEECCSSCCCCCG---GGTT-CTTCSEEEEEEEE-ECCC---GGGTTCTTCSEEEEEES--CCCC--GGGTTCTTCC
T ss_pred CCCEEECCCCCCCCCh---HHcC-CCCCCEEECCCCc-cCCC---hhhccCCcccEeecCCc--ccCc--hhhccCCCCC
Confidence 9999999998644432 2444 9999999999986 3332 24788999999999754 3222 2388999999
Q ss_pred EEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEE
Q 006331 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (650)
Q Consensus 307 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (650)
.|++++|.+.... .+. .+++|++|++++|....... +..+++|+.|++++|.. ... . ....+++|+.|+
T Consensus 181 ~L~l~~n~l~~~~--~l~-~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l-~~~--~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 181 RLDISSNKVSDIS--VLA-KLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL-KDI--G-TLASLTNLTDLD 249 (466)
T ss_dssp EEECCSSCCCCCG--GGG-GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CCC--G-GGGGCTTCSEEE
T ss_pred EEECcCCcCCCCh--hhc-cCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCc-ccc--h-hhhcCCCCCEEE
Confidence 9999999887543 233 78999999999986433222 56789999999998863 321 1 123455666666
Q ss_pred cCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCC
Q 006331 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRS 466 (650)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 466 (650)
+++|....... +. .+++|++|++++|.+.+... +..+++|+.|++++| .++....
T Consensus 250 l~~n~l~~~~~---~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~------------------ 304 (466)
T 1o6v_A 250 LANNQISNLAP---LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN-QLEDISP------------------ 304 (466)
T ss_dssp CCSSCCCCCGG---GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCSCCGG------------------
T ss_pred CCCCccccchh---hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC-cccCchh------------------
Confidence 66554322111 22 45555555555555544322 444455555555554 3332111
Q ss_pred CCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCC
Q 006331 467 SGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNI 546 (650)
Q Consensus 467 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 546 (650)
...+++|+.|++++| .+++... +..+++|++|++++| .+++. ..+..+++|+.|++++| .+
T Consensus 305 -----------~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n-~l 365 (466)
T 1o6v_A 305 -----------ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHN-QI 365 (466)
T ss_dssp -----------GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CC
T ss_pred -----------hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCC-cc
Confidence 234556666666665 3443322 445666666666666 44443 13445566666666666 44
Q ss_pred ChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 547 NDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 547 ~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
++... ...+++|+.|++++|+++.
T Consensus 366 ~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 366 SDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred Cccch---hhcCCCCCEEeccCCcccC
Confidence 33221 3445666677776666554
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.4e-26 Score=243.96 Aligned_cols=466 Identities=12% Similarity=0.079 Sum_probs=230.9
Q ss_pred hCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCC
Q 006331 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (650)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (650)
.|...++++++++. ++.++.. + .++|++|++++|.. +......+. .+++|++|++++|. +.......+ ..++
T Consensus 29 ~~~~~~~l~ls~~~-L~~ip~~-~--~~~L~~L~Ls~N~i-~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~ 100 (562)
T 3a79_B 29 SNELESMVDYSNRN-LTHVPKD-L--PPRTKALSLSQNSI-SELRMPDIS-FLSELRVLRLSHNR-IRSLDFHVF-LFNQ 100 (562)
T ss_dssp ----CCEEECTTSC-CCSCCTT-S--CTTCCEEECCSSCC-CCCCGGGTT-TCTTCCEEECCSCC-CCEECTTTT-TTCT
T ss_pred ccCCCcEEEcCCCC-CccCCCC-C--CCCcCEEECCCCCc-cccChhhhc-cCCCccEEECCCCC-CCcCCHHHh-CCCC
Confidence 45566889998876 5555521 1 37889999988863 332222333 37888888888873 433322222 3678
Q ss_pred CCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCccc--
Q 006331 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL-- 280 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-- 280 (650)
+|++|++++|.++ ..+.. .+++|++|++++|....-.....+.. +++|++|+++++. +... .+..+++|
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~-l~~~----~~~~l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAK-FRQL----DLLPVAHLHL 171 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSB-CCTT----TTGGGTTSCE
T ss_pred CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCc-cccC----chhhhhhcee
Confidence 8888888888887 34433 78888888888875433111233444 7888888888865 3332 23344444
Q ss_pred chhhcccCcCC--chhHHHHhhcCC-CCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCC--ChHHHHHHHhcCCC
Q 006331 281 QQLILAYSFWV--SADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGV--TDEELSFVVQSHKE 355 (650)
Q Consensus 281 ~~L~l~~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~ 355 (650)
++|+++++ .+ ....+..+..+. ..-.+++++|.+...........+++|+.++++++... ........+..+++
T Consensus 172 ~~L~L~~n-~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 172 SCILLDLV-SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEES-SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eEEEeecc-cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 88888877 33 333343443332 01133444444332211111113455666666654210 01122233455566
Q ss_pred CcEEEccCCCCccHHHHHHHHh--cCCCCCEEEcCCCccCCHHHHHHH----hhcCCCCcEEEecCCcc--ChhhHHhhh
Q 006331 356 LRKLDITCCRKITYASINSITK--TCTSLTSLRMECCKLVSWEAFVLI----GQQCQYLEELDITENEV--NDEGLKSIS 427 (650)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~--~~~~~~~l~ 427 (650)
|+.+++.++. +.......... ..++|++|++++|..... .+..+ ...+++|+.+++..+.+ .......+.
T Consensus 251 L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 251 LLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITER-IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp CEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSC-CCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred ceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeecc-ccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 6666665544 22222222111 224666666666542110 00000 01222233333333332 111111222
Q ss_pred cCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChH--HHHHhhc
Q 006331 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDT--SLISLSE 505 (650)
Q Consensus 428 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~l~~ 505 (650)
...+|+.|++++| .+..... ...+++|++|++++|. +++. .......+++|++|++++| .++.. .+..+..
T Consensus 329 ~~~~L~~L~l~~n-~~~~~~~---~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 329 AEMNIKMLSISDT-PFIHMVC---PPSPSSFTFLNFTQNV-FTDS-VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKN 401 (562)
T ss_dssp HTCCCSEEEEESS-CCCCCCC---CSSCCCCCEEECCSSC-CCTT-TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTT
T ss_pred ccCcceEEEccCC-CcccccC---ccCCCCceEEECCCCc-cccc-hhhhhcccCCCCEEECCCC-CcCCcccchhhhcC
Confidence 2345666666666 4432211 1245666666666543 3221 1122235566666666666 45542 2344556
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhC-CcCCeEEeecCCCCcHHHHHHhcCCC
Q 006331 506 CLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYS-QNLKQINLSYCSVTDVGLIALASINC 584 (650)
Q Consensus 506 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~l~~ 584 (650)
+++|++|++++| .++.......+..+++|++|++++| .++.... ..+ ++|+.|++++|+++.+... +..+++
T Consensus 402 l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N~l~~ip~~-~~~l~~ 474 (562)
T 3a79_B 402 MSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNNRIMSIPKD-VTHLQA 474 (562)
T ss_dssp CTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSSCCCCCCTT-TTSSCC
T ss_pred CCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCCcCcccChh-hcCCCC
Confidence 666666666666 4443111122345566666666666 4432211 112 4666666666666643222 235666
Q ss_pred CCceeeecccCCCHHHHHHH-HHhCcccceeeec-cccccCCC
Q 006331 585 LQNMTILHVVGLTPNGLVNA-LLRCQGLIKVKLN-ASFRPLLP 625 (650)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~l~l~-~~~~~~~p 625 (650)
|+.|++.+.. ...++.. +..+++|+.|+++ |.+.+..|
T Consensus 475 L~~L~L~~N~---l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQ---LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSC---CCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCC---CCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6666665431 1122222 4466667777776 55554433
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-26 Score=237.44 Aligned_cols=133 Identities=17% Similarity=0.076 Sum_probs=68.3
Q ss_pred CCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccc
Q 006331 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
++|++|++++|.+++..+..+.++++|++|++++|..........+.. +++|++|++++|. +... .+..+..+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILKLDYNQ-FLQL-ETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-CTTCCEEECTTCT-TCEE-CTTTTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc-cccCCEEeCCCCc-cCcc-ChhhccCcccCC
Confidence 456666666666655555566666666666666654332222222333 5666666666554 1111 123344555555
Q ss_pred hhhcccCcCCchhHHHH--hhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 282 QLILAYSFWVSADLSKC--LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 282 ~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+|++++| .+.+..+.. +..+++|++|++++|.+....+..+...+++|++|++++|
T Consensus 107 ~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 107 VLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp EEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred EEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 5555555 343333333 5556666666666665554433332224555666665554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3e-24 Score=212.09 Aligned_cols=305 Identities=18% Similarity=0.216 Sum_probs=147.9
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.+++|++|+++++.+.. .+.+..+++|++|++++|.... ... +.. +++|++|++++|. +... .
T Consensus 42 ~l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~i~~-~~~--~~~-l~~L~~L~L~~n~-i~~~---~------- 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD-ISP--LSN-LVKLTNLYIGTNK-ITDI---S------- 104 (347)
T ss_dssp HHTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCC-CGG--GTT-CTTCCEEECCSSC-CCCC---G-------
T ss_pred hcccccEEEEeCCcccc--chhhhhcCCccEEEccCCcccc-chh--hhc-CCcCCEEEccCCc-ccCc---h-------
Confidence 56788888888887753 3457777788888887764332 211 333 6777777777664 2221 1
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (650)
.+..+++|++|++++|.+..... +. .+++|++|++++|........ +..+++|+.|
T Consensus 105 ------------------~~~~l~~L~~L~l~~n~i~~~~~--~~-~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L 160 (347)
T 4fmz_A 105 ------------------ALQNLTNLRELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDLSP---LSNMTGLNYL 160 (347)
T ss_dssp ------------------GGTTCTTCSEEECTTSCCCCCGG--GT-TCTTCCEEECTTCTTCCCCGG---GTTCTTCCEE
T ss_pred ------------------HHcCCCcCCEEECcCCcccCchh--hc-cCCceeEEECCCCCCcccccc---hhhCCCCcEE
Confidence 23344555555555554443222 22 445555555555433222111 3445555555
Q ss_pred EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCC
Q 006331 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (650)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (650)
+++++....... ...+++|+.|++++|....... +. .+++|+.++++++.+.+... +..+++|++|++++
T Consensus 161 ~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 161 TVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp ECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred EecCCCcCCchh----hccCCCCCEEEccCCccccccc---cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 555554221111 2344555555555543222111 22 45556666666655554332 44555666666666
Q ss_pred CCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCC
Q 006331 440 CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPR 519 (650)
Q Consensus 440 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (650)
| .++.... ...+++|++|++++|. +++. .....+++|++|++++| .+++. ..+..+++|+.|++++| .
T Consensus 231 n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~ 298 (347)
T 4fmz_A 231 N-KITDLSP---LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-Q 298 (347)
T ss_dssp S-CCCCCGG---GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-C
T ss_pred C-ccCCCcc---hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-c
Confidence 5 4443222 2345555555555543 2211 11234455555555555 34433 23445555555555555 4
Q ss_pred CChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 520 ISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
+++.. +..+..+++|++|++++| .++.... ...+++|+.|++++|+|+
T Consensus 299 l~~~~-~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNED-MEVIGGLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGG-HHHHHTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CCCcC-hhHhhccccCCEEEccCC-ccccccC---hhhhhccceeehhhhccc
Confidence 44332 233345555555555555 3332221 233455555555555543
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.4e-26 Score=234.41 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (650)
.++|+.|++++|.+.+..+..+..+++|+.|++++| .++......+. .+++|+.|++++|. ++.. .......+++|
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L 349 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFW-GLTHLLKLNLSQNF-LGSI-DSRMFENLDKL 349 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSC-CCEE-CGGGGTTCTTC
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhc-CcccCCEEECCCCc-cCCc-ChhHhcCcccC
Confidence 356777777777776666666666777777777776 55533222221 34444444444432 1110 01112234444
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCC
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGC 517 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (650)
++|++++| .++...+..+..+++|++|++++|
T Consensus 350 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 350 EVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCC-cccccChhhccccccccEEECCCC
Confidence 44444444 244333333444444444444444
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.6e-23 Score=205.36 Aligned_cols=301 Identities=18% Similarity=0.172 Sum_probs=201.7
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++|++|+++++. +...+. ...+++|++|++++|.+++..+ +..+++|++|++++|.... ++.+.. +++|
T Consensus 43 l~~L~~L~l~~~~-i~~~~~---~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~-l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQN-LTNL 112 (347)
T ss_dssp HTTCSEEECCSSC-CCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---CGGGTT-CTTC
T ss_pred cccccEEEEeCCc-cccchh---hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC---chHHcC-CCcC
Confidence 7899999999984 433332 2479999999999999875433 8899999999999985443 233454 8999
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
++|++++|. +.... .+..+++|++|++++|.... .+..+..+++|++|++++|.+..... +. .+++|++|+
T Consensus 113 ~~L~l~~n~-i~~~~---~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~-~l~~L~~L~ 183 (347)
T 4fmz_A 113 RELYLNEDN-ISDIS---PLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLS 183 (347)
T ss_dssp SEEECTTSC-CCCCG---GGTTCTTCCEEECTTCTTCC--CCGGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCSEEE
T ss_pred CEEECcCCc-ccCch---hhccCCceeEEECCCCCCcc--cccchhhCCCCcEEEecCCCcCCchh--hc-cCCCCCEEE
Confidence 999999886 33321 16677788888887774432 22336667777777777776554332 22 556666666
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEec
Q 006331 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (650)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (650)
+++|....... +. .+++|+.+++++|....... + ..+++|++|+++
T Consensus 184 l~~n~l~~~~~----~~--------------------------~l~~L~~L~l~~n~l~~~~~---~-~~~~~L~~L~l~ 229 (347)
T 4fmz_A 184 LNYNQIEDISP----LA--------------------------SLTSLHYFTAYVNQITDITP---V-ANMTRLNSLKIG 229 (347)
T ss_dssp CTTSCCCCCGG----GG--------------------------GCTTCCEEECCSSCCCCCGG---G-GGCTTCCEEECC
T ss_pred ccCCccccccc----cc--------------------------CCCccceeecccCCCCCCch---h-hcCCcCCEEEcc
Confidence 66553211111 23 34555555555543222111 2 256777777777
Q ss_pred CCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCC
Q 006331 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNER 494 (650)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 494 (650)
+|.+.+... +..+++|++|++++| .++... ....+++|+.|++++|. +++. .....+++|++|++++| .
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n-~ 298 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN-Q 298 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-C
T ss_pred CCccCCCcc--hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC-c
Confidence 776665443 666777777777777 555431 13367788888887764 3322 22456889999999998 5
Q ss_pred CChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCC
Q 006331 495 ITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 495 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (650)
++...+..+..+++|++|++++| .+++... +..+++|++|++++|
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC
T ss_pred CCCcChhHhhccccCCEEEccCC-ccccccC---hhhhhccceeehhhh
Confidence 88888888888999999999999 5666422 677899999999998
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=6.7e-27 Score=251.97 Aligned_cols=486 Identities=17% Similarity=0.104 Sum_probs=252.9
Q ss_pred CceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccC
Q 006331 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (650)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 151 (650)
++++|+++++. ++.-.. ..+..+++|++|++++|..... ....+. .+++|++|+|++|. ++..+...|..+++
T Consensus 53 ~~~~LdLs~N~-i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~-~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGS---YSFFSFPELQVLDLSRCEIQTI-EDGAYQ-SLSHLSTLILTGNP-IQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC-CCEECT---TTTTTCTTCCEEECTTCCCCEE-CTTTTT-TCTTCCEEECTTCC-CCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC-CCCCCH---HHHhCCCCCCEEECCCCcCCCc-ChhHhc-CCCCCCEEEccCCc-CCCCCHHHhcCCCC
Confidence 46777777665 322110 0345566777777776653221 112222 56677777777665 55555455666777
Q ss_pred cceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCcc--
Q 006331 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE-- 229 (650)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-- 229 (650)
|++|++++|.. +......+ ..+++|++|++++|.. ...........+++|++|++++|.+....+..+..+.+++
T Consensus 126 L~~L~Ls~N~l-~~l~~~~~-~~L~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 126 LQKLVAVETNL-ASLENFPI-GHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CCEEECTTSCC-CCSTTCCC-TTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCEEECCCCcC-CCCChhhh-hcCcccCeeccccCcc-ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 77777776652 22111111 2366677777766632 2111111113566677777777666655454444333222
Q ss_pred --EEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCc------------------
Q 006331 230 --DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------------------ 289 (650)
Q Consensus 230 --~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------------ 289 (650)
.++++.+.. ...... ... ...++.+++.++. .........+..+..++...+....
T Consensus 203 ~~~~~ls~n~l-~~i~~~-~~~-~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 203 NLSLDLSLNPM-NFIQPG-AFK-EIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CCEEECTTCCC-CEECTT-TTT-TCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhcccCcc-cccCcc-ccc-chhhhhhhhhccc-ccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 344443321 111000 001 2233344444332 1112222333333333322221100
Q ss_pred --------------CCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006331 290 --------------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (650)
Q Consensus 290 --------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (650)
.........+..+.+++.+.+.++.+.... .+. ....++.|++.++...... ...++.
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~~~-----~~~l~~ 350 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFS-YNFGWQHLELVNCKFGQFP-----TLKLKS 350 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGG-SCCCCSEEEEESCEESSCC-----CCBCTT
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccc-cchhhhhhhcccccccCcC-----cccchh
Confidence 000011122233445666666655433221 111 3456777777665311110 124466
Q ss_pred CcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHH-HHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCe
Q 006331 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (650)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (650)
|+.+.+..+...... ....+++|+.++++.+...... ...... .+.+|+.+++..+..... ...+..+++|+.
T Consensus 351 L~~l~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~ 424 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAF----SEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFNGVITM-SSNFLGLEQLEH 424 (635)
T ss_dssp CCEEEEESCCSCCBC----CCCBCTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEECCSCSEEEE-CSCCTTCTTCCE
T ss_pred hhhcccccccCCCCc----ccccccccccchhhccccccccccccchh-hhhhhhhhhccccccccc-cccccccccccc
Confidence 777776665422110 0124677888888775432111 111122 567788888777655432 234556778888
Q ss_pred eecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEe
Q 006331 435 LKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEI 514 (650)
Q Consensus 435 L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 514 (650)
+++..+ .............+++++.++++.|.... . .......++.|+.|++++|.......+..+..+++|+.|++
T Consensus 425 l~l~~~-~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 425 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV-A-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp EECTTS-EEESTTSSCTTTTCTTCCEEECTTSCCEE-C-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred hhhhhc-ccccccccccccccccccccccccccccc-c-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 888766 33222222223467788888887654221 1 12233456888888888875344344455667888888888
Q ss_pred cCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcC-CCCCceeeec
Q 006331 515 RGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASI-NCLQNMTILH 592 (650)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~ 592 (650)
++| .++.. .+..+.++++|++|+|++| .++......+ ..+++|+.|++++|+++...+..+..+ ++|+.|++.+
T Consensus 502 s~N-~L~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 502 SQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCBCCCGGG-TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCC-ccCCc-ChHHHcCCCCCCEEECCCC-cCCCCChhHH-hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 888 66664 2445667888888888888 6654433222 446788888888888888777777776 5788888764
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.1e-25 Score=242.52 Aligned_cols=493 Identities=16% Similarity=0.095 Sum_probs=243.3
Q ss_pred cccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCC
Q 006331 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (650)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (650)
.+.+++|++++|.... .....+. .+++|++|+|++|. ++.++...|..+++|++|+|++|. ++......+. .+++
T Consensus 51 p~~~~~LdLs~N~i~~-l~~~~f~-~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~-~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRH-LGSYSFF-SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-GLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTT-TCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT-TCTT
T ss_pred CcCCCEEEeeCCCCCC-CCHHHHh-CCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc-CCCC
Confidence 4578899999887432 2223344 78889999998886 666666678888889999998886 4433222233 3788
Q ss_pred CceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcc-cccccccCCCccEEecCCCCCCC--hhHHHHHHhcCccc
Q 006331 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK-CLPPVVKLQYLEDLVLEGCHGID--DDGLASVEYSCKSL 254 (650)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L 254 (650)
|++|++++|. +...+...+ ..+++|++|++++|.+... .+..++.+++|++|++++|.... ...+..+.......
T Consensus 126 L~~L~Ls~N~-l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCCc-CCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 8888888873 433332222 3678888888888877653 45667778888888888865322 12233333312233
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcC------CHhHHHHHHhhcC
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV------ARSGIKAIGNWHG 328 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~ 328 (650)
..++++.+. +... +........++.+++.++..........+..+..++...+..... .......+. ...
T Consensus 204 ~~~~ls~n~-l~~i--~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~-~~~ 279 (635)
T 4g8a_A 204 LSLDLSLNP-MNFI--QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE-GLC 279 (635)
T ss_dssp CEEECTTCC-CCEE--CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG-GGG
T ss_pred hhhhcccCc-cccc--CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc-ccc
Confidence 455665543 2211 111223345566666665333334455566677766655532211 100000111 112
Q ss_pred CCcEEecCCCCC-CChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHH----------
Q 006331 329 SLKELSLSKCSG-VTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA---------- 397 (650)
Q Consensus 329 ~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------- 397 (650)
.+....+..... .........+....+++.+.+.++....... .....+++.|++.++.......
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG----GGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc----cccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 222222211100 0000011112233444444444432111000 1123344444444432111000
Q ss_pred --------HHHHhhcCCCCcEEEecCCccChhh--HHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCC
Q 006331 398 --------FVLIGQQCQYLEELDITENEVNDEG--LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS 467 (650)
Q Consensus 398 --------~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 467 (650)
.... ..+++|+.++++.+.+.... ......+.+|+.+++..+ ...... .....+++|+.+++..+.
T Consensus 356 l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~--~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 356 FTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMS--SNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EESCCSCCBCCC-CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEEC--SCCTTCTTCCEEECTTSE
T ss_pred cccccCCCCccc-ccccccccchhhccccccccccccchhhhhhhhhhhcccc-cccccc--ccccccccccchhhhhcc
Confidence 0000 13455555555555443221 223334455555555554 221110 011245566666665443
Q ss_pred CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCC
Q 006331 468 GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIN 547 (650)
Q Consensus 468 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 547 (650)
..... .......+++++.++++.| .+.......+..+++|+.|++++|..... ..+..+..+++|++|++++| .++
T Consensus 432 ~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N-~L~ 507 (635)
T 4g8a_A 432 LKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQC-QLE 507 (635)
T ss_dssp EESTT-SSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCC
T ss_pred ccccc-ccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCC-ccC
Confidence 22211 0112234566666666666 34444444555566777777776632222 12334455667777777777 554
Q ss_pred hhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHH-HHHHhC-cccceeeec
Q 006331 548 DNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLV-NALLRC-QGLIKVKLN 617 (650)
Q Consensus 548 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~-~~L~~l~l~ 617 (650)
......+ ..+++|+.|++++|+++...+..+.++++|+.|++.+.. ..++. ..+..+ ++|+.|+++
T Consensus 508 ~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 508 QLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH---IMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp EECTTTT-TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC---CCBCCSSCTTCCCTTCCEEECT
T ss_pred CcChHHH-cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc---CCCCCHHHHHhhhCcCCEEEee
Confidence 3322111 345667777777777766666666666666666665431 11111 122244 467777776
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.5e-24 Score=218.79 Aligned_cols=343 Identities=16% Similarity=0.166 Sum_probs=172.9
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++|++|++++| .+...+ . ...+++|++|++++|.+++. .++.+++|++|++++|...+ .. +.. +++|
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~---~~~-l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-G--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD---VTP-LTKL 108 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-T--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTT-CTTC
T ss_pred cCCCCEEEccCC-CcccCh-h--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee---cCC-CCcC
Confidence 566677777666 333322 1 13566666666666666542 25566666666666654322 11 222 5666
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
++|++++|. +... .+..+++|++|+++ +|.+++.. +. .+++|++|+
T Consensus 109 ~~L~L~~N~-l~~l----~~~~l~~L~~L~l~-------------------------~N~l~~l~---l~-~l~~L~~L~ 154 (457)
T 3bz5_A 109 TYLNCDTNK-LTKL----DVSQNPLLTYLNCA-------------------------RNTLTEID---VS-HNTQLTELD 154 (457)
T ss_dssp CEEECCSSC-CSCC----CCTTCTTCCEEECT-------------------------TSCCSCCC---CT-TCTTCCEEE
T ss_pred CEEECCCCc-CCee----cCCCCCcCCEEECC-------------------------CCccceec---cc-cCCcCCEEE
Confidence 666666554 2221 13444445555554 44443321 11 344455555
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEec
Q 006331 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (650)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (650)
+++|..+.... +..+++|+.|++++|. +.... ...+++|+.|++++|..... .+. .+++|+.|+++
T Consensus 155 l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~l~~~----~l~-~l~~L~~L~Ls 220 (457)
T 3bz5_A 155 CHLNKKITKLD----VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNNITKL----DLN-QNIQLTFLDCS 220 (457)
T ss_dssp CTTCSCCCCCC----CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSCCSCC----CCT-TCTTCSEEECC
T ss_pred CCCCCcccccc----cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCcCCee----ccc-cCCCCCEEECc
Confidence 54443222211 2344555555555543 22111 23445555555555432211 122 45566666666
Q ss_pred CCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEec----------cCCCCCCHHHHHHHHhcCCCC
Q 006331 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL----------YRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~~~~~L 484 (650)
+|.+.+.. +..+++|+.|++++| .++... ...+++|+.|++ ++|....... ...+++|
T Consensus 221 ~N~l~~ip---~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L 288 (457)
T 3bz5_A 221 SNKLTEID---VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKI 288 (457)
T ss_dssp SSCCSCCC---CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTC
T ss_pred CCcccccC---ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccC
Confidence 65555421 445556666666665 444322 123445554444 3333222110 1234555
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeE
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQI 564 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 564 (650)
+.|++++|..+.... ...++|+.|+++ .+++|++|++++| .++... ...+++|+.|
T Consensus 289 ~~L~Ls~n~~l~~l~----~~~~~L~~L~l~---------------~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L 344 (457)
T 3bz5_A 289 KELDVTHNTQLYLLD----CQAAGITELDLS---------------QNPKLVYLYLNNT-ELTELD----VSHNTKLKSL 344 (457)
T ss_dssp CCCCCTTCTTCCEEE----CTTCCCSCCCCT---------------TCTTCCEEECTTC-CCSCCC----CTTCTTCSEE
T ss_pred CEEECCCCcccceec----cCCCcceEechh---------------hcccCCEEECCCC-cccccc----cccCCcCcEE
Confidence 555555553222111 012333333333 3367888888888 666542 3457889999
Q ss_pred EeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCChhH
Q 006331 565 NLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQSF 628 (650)
Q Consensus 565 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~~~ 628 (650)
++++|++++ ++.|..|.+.+ +...+. ..+..|..++++ +.+.|.+|.++
T Consensus 345 ~l~~N~l~~--------l~~L~~L~l~~---n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 345 SCVNAHIQD--------FSSVGKIPALN---NNFEAE----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ECCSSCCCB--------CTTGGGSSGGG---TSEEEE----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ECCCCCCCC--------ccccccccccC---CcEEec----ceeeecCccccccCcEEEEcChhH
Confidence 999998876 34555554332 222222 256788889999 88889998754
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.2e-24 Score=217.15 Aligned_cols=287 Identities=17% Similarity=0.155 Sum_probs=145.5
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.+++|++|++++|.+++. .++.+++|++|++++|.... .. +.. +++|++|++++|..+... .+..+++
T Consensus 104 ~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~-l~---l~~-l~~L~~L~l~~n~~~~~~----~~~~l~~ 171 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTE-ID---VSH-NTQLTELDCHLNKKITKL----DVTPQTQ 171 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSC-CC---CTT-CTTCCEEECTTCSCCCCC----CCTTCTT
T ss_pred CCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCccce-ec---ccc-CCcCCEEECCCCCccccc----ccccCCc
Confidence 344455555554444431 14444455555554443222 10 222 444555555444322221 1333444
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (650)
|++|+++++ .+.. .+ +..+++|+.|++++|.++... +. .+++|++|++++|. +... + +..+++|+.|
T Consensus 172 L~~L~ls~n-~l~~-l~--l~~l~~L~~L~l~~N~l~~~~---l~-~l~~L~~L~Ls~N~-l~~i--p--~~~l~~L~~L 238 (457)
T 3bz5_A 172 LTTLDCSFN-KITE-LD--VSQNKLLNRLNCDTNNITKLD---LN-QNIQLTFLDCSSNK-LTEI--D--VTPLTQLTYF 238 (457)
T ss_dssp CCEEECCSS-CCCC-CC--CTTCTTCCEEECCSSCCSCCC---CT-TCTTCSEEECCSSC-CSCC--C--CTTCTTCSEE
T ss_pred CCEEECCCC-ccce-ec--cccCCCCCEEECcCCcCCeec---cc-cCCCCCEEECcCCc-cccc--C--ccccCCCCEE
Confidence 555555444 2222 11 445556666666666555431 22 45566666666553 2221 1 3455666666
Q ss_pred EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCC
Q 006331 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (650)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (650)
++++|.. .... ...+++|+.|+++. .+|+.|++++|...+..+ +..+++|+.|++++
T Consensus 239 ~l~~N~l-~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 239 DCSVNPL-TELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp ECCSSCC-SCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred EeeCCcC-CCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc--ccccccCCEEECCC
Confidence 6666542 2211 23455666665543 245566666655433322 34567777777777
Q ss_pred CCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCC
Q 006331 440 CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPR 519 (650)
Q Consensus 440 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (650)
|..+.... ...++|+.|++++| ++|++|++++| .++.. .+..+++|+.|++++| .
T Consensus 296 n~~l~~l~-----~~~~~L~~L~l~~~---------------~~L~~L~L~~N-~l~~l---~l~~l~~L~~L~l~~N-~ 350 (457)
T 3bz5_A 296 NTQLYLLD-----CQAAGITELDLSQN---------------PKLVYLYLNNT-ELTEL---DVSHNTKLKSLSCVNA-H 350 (457)
T ss_dssp CTTCCEEE-----CTTCCCSCCCCTTC---------------TTCCEEECTTC-CCSCC---CCTTCTTCSEEECCSS-C
T ss_pred Ccccceec-----cCCCcceEechhhc---------------ccCCEEECCCC-ccccc---ccccCCcCcEEECCCC-C
Confidence 74333211 13355555555443 57777777777 46553 2666777777777777 5
Q ss_pred CChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHH
Q 006331 520 ISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVG 575 (650)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 575 (650)
+++ ++.|..|.++.| .+... ..+..|+.+++++|+++...
T Consensus 351 l~~---------l~~L~~L~l~~n-~l~g~------~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 351 IQD---------FSSVGKIPALNN-NFEAE------GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp CCB---------CTTGGGSSGGGT-SEEEE------EEEEECCCBCCBTTBEEEEC
T ss_pred CCC---------ccccccccccCC-cEEec------ceeeecCccccccCcEEEEc
Confidence 554 255666666666 33221 23456777788888776543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.5e-23 Score=206.27 Aligned_cols=241 Identities=14% Similarity=0.120 Sum_probs=125.4
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccc
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 255 (650)
++++.|+++++ .++..+...+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.. .......+.. +++|+
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQN-VPLLT 120 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT-CTTCC
T ss_pred CCceEEEecCC-chhhCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcC-CCCCC
Confidence 45555555554 2333333322 2455566666655555544444555556666666655432 2221222223 55566
Q ss_pred eeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEec
Q 006331 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (650)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 335 (650)
+|++++|. +.... ...+..+++|++|+++++ .+....+..+..+++|++|++++|.++... +. .+++|+.|++
T Consensus 121 ~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~-~l~~L~~L~l 193 (390)
T 3o6n_A 121 VLVLERND-LSSLP-RGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS-LIPSLFHANV 193 (390)
T ss_dssp EEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GG-GCTTCSEEEC
T ss_pred EEECCCCc-cCcCC-HHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccc---cc-cccccceeec
Confidence 66665553 22110 122345566666666665 344344455666777777777777666432 22 4567777777
Q ss_pred CCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecC
Q 006331 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (650)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (650)
+++. +.. +...++|+.|+++++.. .... ....++|+.|++++|..... ..+. .+++|++|++++
T Consensus 194 ~~n~-l~~------~~~~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~n~l~~~---~~l~-~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 194 SYNL-LST------LAIPIAVEELDASHNSI-NVVR----GPVNVELTILKLQHNNLTDT---AWLL-NYPGLVEVDLSY 257 (390)
T ss_dssp CSSC-CSE------EECCSSCSEEECCSSCC-CEEE----CCCCSSCCEEECCSSCCCCC---GGGG-GCTTCSEEECCS
T ss_pred cccc-ccc------cCCCCcceEEECCCCee-eecc----ccccccccEEECCCCCCccc---HHHc-CCCCccEEECCC
Confidence 7653 221 12335666777666652 2111 01235666666666543221 1222 566666666666
Q ss_pred CccChhhHHhhhcCCCCCeeecCCCCCCC
Q 006331 416 NEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (650)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~i~ 444 (650)
|.+.+..+..+..+++|+.|++++| .++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 285 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNN-RLV 285 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSS-CCC
T ss_pred CcCCCcChhHccccccCCEEECCCC-cCc
Confidence 6666655556666666666666666 444
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=5.1e-24 Score=216.29 Aligned_cols=409 Identities=16% Similarity=0.150 Sum_probs=191.2
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhh---CCCCceeecccccccchHHHHHHHhhC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAAC---CRKLKLLCLKWCIRVTDLGVELVALKC 201 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (650)
.+|++|+++++. ++.++ ..++.+++|++|+++++...+ .++.. +.+|+.+++..| ..
T Consensus 11 ~~L~~L~l~~n~-l~~iP-~~i~~L~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~l~l~~c-------------~~ 70 (454)
T 1jl5_A 11 TFLQEPLRHSSN-LTEMP-VEAENVKSKTEYYNAWSEWER-----NAPPGNGEQREMAVSRLRDC-------------LD 70 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHH-----TSCTTSCCCHHHHHHHHHHH-------------HH
T ss_pred ccchhhhcccCc-hhhCC-hhHhcccchhhhhccCCcccc-----cCCcccccchhcchhhhhhh-------------hc
Confidence 466666666665 35554 456777777777776654210 11111 222222222222 11
Q ss_pred CCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccC-ccc
Q 006331 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA-DYL 280 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L 280 (650)
.++++|++++|.+++ .+. + .++|++|++++|...+ . + ...++|++|++++|. +.. +... ++|
T Consensus 71 ~~l~~L~l~~~~l~~-lp~-~--~~~L~~L~l~~n~l~~-l--p---~~~~~L~~L~l~~n~-l~~------l~~~~~~L 133 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPE-L--PPHLESLVASCNSLTE-L--P---ELPQSLKSLLVDNNN-LKA------LSDLPPLL 133 (454)
T ss_dssp HTCSEEECTTSCCSC-CCS-C--CTTCSEEECCSSCCSS-C--C---CCCTTCCEEECCSSC-CSC------CCSCCTTC
T ss_pred cCCCEEEecCCcccc-CCC-C--cCCCCEEEccCCcCCc-c--c---cccCCCcEEECCCCc-cCc------ccCCCCCC
Confidence 345555555555442 111 1 2455555555543222 1 0 113455666665543 211 1111 456
Q ss_pred chhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 006331 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (650)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (650)
++|++++| .+.+ +| .+..+++|++|++++|.++.. ....++|++|++++|.. .. ++ .+..+++|+.|+
T Consensus 134 ~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-----p~~~~~L~~L~L~~n~l-~~--l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 134 EYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQL-EE--LP-ELQNLPFLTAIY 201 (454)
T ss_dssp CEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCC-SS--CC-CCTTCTTCCEEE
T ss_pred CEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCccc-----CCCcccccEEECcCCcC-Cc--Cc-cccCCCCCCEEE
Confidence 66666665 3332 33 466667777777777766531 11235777777776642 22 11 245667777777
Q ss_pred ccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCC
Q 006331 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (650)
+++|.. .. +....++|+.|++++|.... ...+. .+++|++|++++|.+..... ..++|+.|++++|
T Consensus 202 l~~N~l-~~-----l~~~~~~L~~L~l~~n~l~~---lp~~~-~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 202 ADNNSL-KK-----LPDLPLSLESIVAGNNILEE---LPELQ-NLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDN 267 (454)
T ss_dssp CCSSCC-SS-----CCCCCTTCCEEECCSSCCSS---CCCCT-TCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSS
T ss_pred CCCCcC-Cc-----CCCCcCcccEEECcCCcCCc---ccccC-CCCCCCEEECCCCcCCcccc----cccccCEEECCCC
Confidence 777653 21 11123578888888765321 11233 67888888888887765221 2478888888888
Q ss_pred CCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcC-CCCcEEEecCCCC
Q 006331 441 SNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSEC-LRLKVLEIRGCPR 519 (650)
Q Consensus 441 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~ 519 (650)
.++. +...+++|+.|++++|. ++. +. ...++|++|++++| .++. +..+ ++|++|++++| .
T Consensus 268 -~l~~-----l~~~~~~L~~L~ls~N~-l~~--l~---~~~~~L~~L~l~~N-~l~~-----i~~~~~~L~~L~Ls~N-~ 328 (454)
T 1jl5_A 268 -YLTD-----LPELPQSLTFLDVSENI-FSG--LS---ELPPNLYYLNASSN-EIRS-----LCDLPPSLEELNVSNN-K 328 (454)
T ss_dssp -CCSC-----CCCCCTTCCEEECCSSC-CSE--ES---CCCTTCCEEECCSS-CCSE-----ECCCCTTCCEEECCSS-C
T ss_pred -cccc-----cCcccCcCCEEECcCCc-cCc--cc---CcCCcCCEEECcCC-cCCc-----ccCCcCcCCEEECCCC-c
Confidence 6653 12235788888888764 332 11 12268899999888 4654 2234 58999999998 6
Q ss_pred CChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcC-CCCCceeeecccCCCH
Q 006331 520 ISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASI-NCLQNMTILHVVGLTP 598 (650)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~ 598 (650)
++.. + ..+++|++|++++| .++.... .+++|+.|++++|+++... .. ..+..|..... .
T Consensus 329 l~~l--p---~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~-----~ip~~l~~L~~n~~----~ 388 (454)
T 1jl5_A 329 LIEL--P---ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFP-----DIPESVEDLRMNSH----L 388 (454)
T ss_dssp CSCC--C---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCC-----CCCTTCCEEECCC------
T ss_pred cccc--c---ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCC-----CChHHHHhhhhccc----c
Confidence 6652 2 23588999999998 6664332 4688999999999887621 11 12333332211 1
Q ss_pred HHHHHHHHhCcccceeeec-ccccc--CCChhHHHHhhhcccEE
Q 006331 599 NGLVNALLRCQGLIKVKLN-ASFRP--LLPQSFLHYMEAQNFLF 639 (650)
Q Consensus 599 ~~~~~~~~~~~~L~~l~l~-~~~~~--~~p~~~~~~~~~~~~~~ 639 (650)
..++. .+++|+.|+++ |.+.+ .+|.. ++.+.+.+|.+
T Consensus 389 ~~i~~---~~~~L~~L~ls~N~l~~~~~iP~s-l~~L~~~~~~~ 428 (454)
T 1jl5_A 389 AEVPE---LPQNLKQLHVETNPLREFPDIPES-VEDLRMNSERV 428 (454)
T ss_dssp --------------------------------------------
T ss_pred ccccc---ccCcCCEEECCCCcCCccccchhh-HhheeCcCccc
Confidence 12221 34788888888 66655 66654 66667776654
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1.5e-23 Score=212.77 Aligned_cols=383 Identities=13% Similarity=0.084 Sum_probs=194.0
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCc-------------cEEecCCCCCCChh
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL-------------EDLVLEGCHGIDDD 242 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~ 242 (650)
.+|++|+++++. ++.++..+ +++++|++|++++|.+.+..|..++++.+| ++|++++|...+ .
T Consensus 11 ~~L~~L~l~~n~-l~~iP~~i--~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSN-LTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccchhhhcccCc-hhhCChhH--hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 566667776663 35555443 467777777777777766677777766654 788888765322 1
Q ss_pred HHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcC-CCCcEEEecCCcCCHhHHH
Q 006331 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVARSGIK 321 (650)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~ 321 (650)
+ ...++|++|+++++. +.. ++ ...++|++|+++++ .+.+ +... ++|++|++++|.+++. +
T Consensus 87 --p---~~~~~L~~L~l~~n~-l~~--lp---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~l-p- 147 (454)
T 1jl5_A 87 --P---ELPPHLESLVASCNS-LTE--LP---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKL-P- 147 (454)
T ss_dssp --C---SCCTTCSEEECCSSC-CSS--CC---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSC-C-
T ss_pred --C---CCcCCCCEEEccCCc-CCc--cc---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCC-c-
Confidence 1 114678888887765 222 11 22467888888777 3332 1122 5788888888877652 2
Q ss_pred HHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHH
Q 006331 322 AIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLI 401 (650)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 401 (650)
.+. .+++|++|++++|. +.. ++ ...++|++|++++|.. ... +. ...+++|+.|++++|.... +
T Consensus 148 ~~~-~l~~L~~L~l~~N~-l~~--lp---~~~~~L~~L~L~~n~l-~~l--~~-~~~l~~L~~L~l~~N~l~~------l 210 (454)
T 1jl5_A 148 ELQ-NSSFLKIIDVDNNS-LKK--LP---DLPPSLEFIAAGNNQL-EEL--PE-LQNLPFLTAIYADNNSLKK------L 210 (454)
T ss_dssp CCT-TCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCC-SSC--CC-CTTCTTCCEEECCSSCCSS------C
T ss_pred ccC-CCCCCCEEECCCCc-Ccc--cC---CCcccccEEECcCCcC-CcC--cc-ccCCCCCCEEECCCCcCCc------C
Confidence 344 67788888887764 221 11 1235788888877753 321 11 3467778888887765322 1
Q ss_pred hhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcC
Q 006331 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGC 481 (650)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (650)
....++|++|++++|.+.... .+..+++|++|++++| .++.. ...+++|+.|++++|. ++. ++ ...
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N-~l~~l-----~~~~~~L~~L~l~~N~-l~~--l~---~~~ 276 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNN-LLKTL-----PDLPPSLEALNVRDNY-LTD--LP---ELP 276 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS-CCSSC-----CSCCTTCCEEECCSSC-CSC--CC---CCC
T ss_pred CCCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCC-cCCcc-----cccccccCEEECCCCc-ccc--cC---ccc
Confidence 112357788888877776332 3667777888888777 55531 1234677777777654 331 11 134
Q ss_pred CCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcC-CCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 482 PSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGC-RQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
++|++|++++| .++... .-.++|++|++++| .++.. ..+ ++|++|++++| .++... ..+++
T Consensus 277 ~~L~~L~ls~N-~l~~l~----~~~~~L~~L~l~~N-~l~~i------~~~~~~L~~L~Ls~N-~l~~lp-----~~~~~ 338 (454)
T 1jl5_A 277 QSLTFLDVSEN-IFSGLS----ELPPNLYYLNASSN-EIRSL------CDLPPSLEELNVSNN-KLIELP-----ALPPR 338 (454)
T ss_dssp TTCCEEECCSS-CCSEES----CCCTTCCEEECCSS-CCSEE------CCCCTTCCEEECCSS-CCSCCC-----CCCTT
T ss_pred CcCCEEECcCC-ccCccc----CcCCcCCEEECcCC-cCCcc------cCCcCcCCEEECCCC-cccccc-----ccCCc
Confidence 67777777777 354321 01257777777777 55542 122 47777777777 554321 22567
Q ss_pred CCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeeccccccCCCh--hHHHHhhhcccE
Q 006331 561 LKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQ--SFLHYMEAQNFL 638 (650)
Q Consensus 561 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~p~--~~~~~~~~~~~~ 638 (650)
|+.|++++|.++.... .+++|++|++.+..-.....++ ..+..+.. +++.+.+|. +.++.+++.+|.
T Consensus 339 L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip------~~l~~L~~-n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 339 LERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIP------ESVEDLRM-NSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCC------TTCCEEEC-CC---------------------
T ss_pred CCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCCh------HHHHhhhh-cccccccccccCcCCEEECCCCc
Confidence 7777777777765322 3566666666643211100111 12333321 334444443 357888888887
Q ss_pred EEe
Q 006331 639 FLW 641 (650)
Q Consensus 639 ~~~ 641 (650)
+..
T Consensus 408 l~~ 410 (454)
T 1jl5_A 408 LRE 410 (454)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=9.5e-23 Score=204.53 Aligned_cols=316 Identities=19% Similarity=0.163 Sum_probs=167.3
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.+++++.|+++++.++......+..+++|++|++++|. +.......+.. +++|++|+++++. +... .+..+..+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~-l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAY-AHTIQKLYMGFNA-IRYL-PPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTT-CTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccC-CCCcCEEECCCCC-CCcC-CHHHhcCCCC
Confidence 45677777777777664444445667777777777754 23322223333 6677777776654 2221 1233455566
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (650)
|++|+++++ .+....+..+..+++|++|++++|.+.......+. .+++|++|+++++. +.... +..
T Consensus 119 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~----~~~------- 184 (390)
T 3o6n_A 119 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNR-LTHVD----LSL------- 184 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSC-CSBCC----GGG-------
T ss_pred CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCc-CCccc----ccc-------
Confidence 666666655 33322222245556666666666555433332232 34555555555543 22111 223
Q ss_pred EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCC
Q 006331 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (650)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (650)
+++|+.|+++++.... + ...++|++|++++|.+..... ...++|+.|++++
T Consensus 185 -------------------l~~L~~L~l~~n~l~~------~-~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 185 -------------------IPSLFHANVSYNLLST------L-AIPIAVEELDASHNSINVVRG---PVNVELTILKLQH 235 (390)
T ss_dssp -------------------CTTCSEEECCSSCCSE------E-ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCS
T ss_pred -------------------ccccceeecccccccc------c-CCCCcceEEECCCCeeeeccc---cccccccEEECCC
Confidence 4455555555432211 0 123456666666655544311 1235666666666
Q ss_pred CCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCC
Q 006331 440 CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPR 519 (650)
Q Consensus 440 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (650)
| .+++. . ....+++|+.|++++|. ++.. .+.....+++|++|++++| .++... ..+..+++|++|++++| .
T Consensus 236 n-~l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 236 N-NLTDT--A-WLLNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNN-RLVALN-LYGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp S-CCCCC--G-GGGGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECCSS-CCCEEE-CSSSCCTTCCEEECCSS-C
T ss_pred C-CCccc--H-HHcCCCCccEEECCCCc-CCCc-ChhHccccccCCEEECCCC-cCcccC-cccCCCCCCCEEECCCC-c
Confidence 6 55433 1 22355666666666543 2211 1122335677777777776 355432 12235777888888877 5
Q ss_pred CChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHH
Q 006331 520 ISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIA 578 (650)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 578 (650)
++.. +..+..+++|++|++++| .++... ...+++|+.|++++|++.......
T Consensus 307 l~~~--~~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 307 LLHV--ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp CCCC--GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred ceec--CccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCCccchhHHH
Confidence 5542 223345678888888888 555443 234678888888888877655443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3e-22 Score=212.01 Aligned_cols=316 Identities=16% Similarity=0.132 Sum_probs=177.8
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccc
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 255 (650)
++++.++++++ .+..++...+ ..+++|++|++++|.+.+..+..++.+++|++|++++|.. .......+.. +++|+
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQN-VPLLT 126 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT-CTTCC
T ss_pred CCceEEEeeCC-CCCCcCHHHH-ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcC-CCCCC
Confidence 44455555444 2333332222 2455555555555555544444555555555555555432 2222222222 55555
Q ss_pred eeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEec
Q 006331 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (650)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 335 (650)
+|++++|. +... .+..+..+++|++|++++| .+....+..+..+++|++|++++|.++... +. .+++|+.|++
T Consensus 127 ~L~L~~n~-l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~-~l~~L~~L~l 199 (597)
T 3oja_B 127 VLVLERND-LSSL-PRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS-LIPSLFHANV 199 (597)
T ss_dssp EEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG-GCTTCSEEEC
T ss_pred EEEeeCCC-CCCC-CHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh-hhhhhhhhhc
Confidence 55555553 2211 1222455666666666666 444445556677777777777777766542 22 5677777777
Q ss_pred CCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecC
Q 006331 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (650)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (650)
+++. +.. +...++|+.|+++++.. .... ....++|+.|++++|..... ..+. .+++|+.|++++
T Consensus 200 ~~n~-l~~------l~~~~~L~~L~ls~n~l-~~~~----~~~~~~L~~L~L~~n~l~~~---~~l~-~l~~L~~L~Ls~ 263 (597)
T 3oja_B 200 SYNL-LST------LAIPIAVEELDASHNSI-NVVR----GPVNVELTILKLQHNNLTDT---AWLL-NYPGLVEVDLSY 263 (597)
T ss_dssp CSSC-CSE------EECCTTCSEEECCSSCC-CEEE----CSCCSCCCEEECCSSCCCCC---GGGG-GCTTCSEEECCS
T ss_pred ccCc-ccc------ccCCchhheeeccCCcc-cccc----cccCCCCCEEECCCCCCCCC---hhhc-cCCCCCEEECCC
Confidence 7764 222 12446777787777763 2111 01235788888887654332 2233 678888888888
Q ss_pred CccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCC
Q 006331 416 NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERI 495 (650)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 495 (650)
|.+.+..+..+..+++|+.|++++| .++... .....+++|+.|++++|.... ++.....+++|+.|++++|. +
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~l~~L~~L~L~~N~-l 336 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNS-I 336 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSC-C
T ss_pred CccCCCCHHHhcCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCCCCCc---cCcccccCCCCCEEECCCCC-C
Confidence 8888777777888888888888888 665421 112346777777777664322 22222345777777777773 5
Q ss_pred ChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHH
Q 006331 496 TDTSLISLSECLRLKVLEIRGCPRISAIGLSAIA 529 (650)
Q Consensus 496 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 529 (650)
+... +..+++|+.|++++| .+.......++
T Consensus 337 ~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~ 366 (597)
T 3oja_B 337 VTLK---LSTHHTLKNLTLSHN-DWDCNSLRALF 366 (597)
T ss_dssp CCCC---CCTTCCCSEEECCSS-CEEHHHHHHHT
T ss_pred CCcC---hhhcCCCCEEEeeCC-CCCChhHHHHH
Confidence 4432 445677777777777 44444444443
No 45
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.3e-20 Score=180.77 Aligned_cols=260 Identities=14% Similarity=0.221 Sum_probs=190.0
Q ss_pred CCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCC
Q 006331 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (650)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (650)
.++.++++++.+.......+. .++++.|++.++. +.... .. +..+++|++|++++|. +.+..+......+++|+
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n~-l~~~~-~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSF-MDQPL-AE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHH--HTTCSEEECTTCE-ECSCC-CS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCCHHHHHhhh--hccceEEEcCCcc-ccccc-hh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 478888888887754433332 2788899888764 22111 01 2356888888888886 55555677777888888
Q ss_pred EEEcCCCccCCHHHHHHHhhcCCCCcEEEecCC-ccChhh-HHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCc-cCcE
Q 006331 384 SLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEG-LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS-MLKE 460 (650)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~-~L~~ 460 (650)
+|++++|. +++..+..+. .+++|++|++++| .+++.. ...+..+++|++|++++|..+++.++......++ +|++
T Consensus 122 ~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp EEECTTCB-CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred EEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 88888874 6666666666 5888888888888 677653 3446678888999988887788776666666788 8999
Q ss_pred EeccCCC-CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEe
Q 006331 461 LDLYRSS-GITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLD 539 (650)
Q Consensus 461 L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (650)
|++++|. .+++.++......+++|++|++++|..+++..+..+..+++|++|++++|..+++.++ ..+..+++|+.|+
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~ 278 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQ 278 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEe
Confidence 9998876 5777777777778889999999988557777777888888999999988876666544 2345688899999
Q ss_pred cCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHH
Q 006331 540 IKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLI 577 (650)
Q Consensus 540 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 577 (650)
+++| +++.++..+.. +++.|++++|.+++..+.
T Consensus 279 l~~~--i~~~~~~~l~~---~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 279 VFGI--VPDGTLQLLKE---ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CTTS--SCTTCHHHHHH---HSTTSEESCCCSCCTTCS
T ss_pred ccCc--cCHHHHHHHHh---hCcceEEecccCccccCC
Confidence 9888 77766666643 355566888888775443
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=8.2e-23 Score=211.06 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=75.2
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccc
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 255 (650)
++++.|++++|. +...+...+ ..+++|++|++++|.+++..+..|.++++|++|++++|.. .......+.. +++|+
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTG-LSNLT 107 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTT-CTTCC
T ss_pred CCCcEEECCCCc-cceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccccC-CCCCC
Confidence 466777776663 333222211 3566677777777666655566666666677777666532 2221112222 56666
Q ss_pred eeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEec
Q 006331 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (650)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 335 (650)
+|++++|. +... .+..+..+++|++|+++++ .+....+..+..+++|+.|++++|.++......+. .+++|+.|++
T Consensus 108 ~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l 183 (477)
T 2id5_A 108 KLDISENK-IVIL-LDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHGLIVLRL 183 (477)
T ss_dssp EEECTTSC-CCEE-CTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTTCCEEEE
T ss_pred EEECCCCc-cccC-ChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcccChhHhc-ccCCCcEEeC
Confidence 66666554 1111 1223444455555555544 23333333444445555555555544433333333 3444444444
Q ss_pred CCC
Q 006331 336 SKC 338 (650)
Q Consensus 336 ~~~ 338 (650)
+++
T Consensus 184 ~~n 186 (477)
T 2id5_A 184 RHL 186 (477)
T ss_dssp ESC
T ss_pred CCC
Confidence 443
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2e-23 Score=215.70 Aligned_cols=303 Identities=18% Similarity=0.181 Sum_probs=216.7
Q ss_pred CcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCC
Q 006331 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (650)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 330 (650)
.++++.|+++++. +.... +..+..+++|++|+++++ .+....+..+..+++|++|++++|.++......+. .+++|
T Consensus 31 ~~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLN-QDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT-GLSNL 106 (477)
T ss_dssp CTTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST-TCTTC
T ss_pred CCCCcEEECCCCc-cceEC-HhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCccccc-CCCCC
Confidence 3689999999886 33322 356788999999999998 66666678899999999999999988755444444 68999
Q ss_pred cEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcE
Q 006331 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (650)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (650)
++|++++|.. ... ....+..+++|+.|+++++.. .... ...+..+++|+.|++++|.. +......+. .+++|+.
T Consensus 107 ~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~-~l~~L~~ 180 (477)
T 2id5_A 107 TKLDISENKI-VIL-LDYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKCNL-TSIPTEALS-HLHGLIV 180 (477)
T ss_dssp CEEECTTSCC-CEE-CTTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESCCC-SSCCHHHHT-TCTTCCE
T ss_pred CEEECCCCcc-ccC-ChhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCCcC-cccChhHhc-ccCCCcE
Confidence 9999998853 221 123356789999999998863 2211 12234678999999998753 332233333 7899999
Q ss_pred EEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCC
Q 006331 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIA 490 (650)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 490 (650)
|++++|.+.......+..+++|+.|++++|..+.... .... ...+|+.|++++|. ++... ......+++|+.|+++
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCL-YGLNLTSLSITHCN-LTAVP-YLAVRHLVYLRFLNLS 256 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTT-TTCCCSEEEEESSC-CCSCC-HHHHTTCTTCCEEECC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-cccc-cCccccEEECcCCc-ccccC-HHHhcCccccCeeECC
Confidence 9999998888777778889999999999884443222 1121 33589999998864 44221 1234578899999999
Q ss_pred CCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCC
Q 006331 491 YNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCS 570 (650)
Q Consensus 491 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 570 (650)
+| .++......+..+++|++|++++| .++... +..+..+++|+.|++++| .++......+ ..+++|+.|++++|+
T Consensus 257 ~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 257 YN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVE-PYAFRGLNYLRVLNVSGN-QLTTLEESVF-HSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCCEECTTSCTTCTTCCEEECCSS-CCSEEC-TTTBTTCTTCCEEECCSS-CCSCCCGGGB-SCGGGCCEEECCSSC
T ss_pred CC-cCCccChhhccccccCCEEECCCC-ccceEC-HHHhcCcccCCEEECCCC-cCceeCHhHc-CCCcccCEEEccCCC
Confidence 98 577776667778899999999998 666642 345567889999999998 6665433222 345789999999998
Q ss_pred CC
Q 006331 571 VT 572 (650)
Q Consensus 571 i~ 572 (650)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1e-21 Score=207.86 Aligned_cols=286 Identities=14% Similarity=0.141 Sum_probs=158.6
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.+.+++.++++++.+....+..+.++++|+.|++++|. +.......+.. +++|++|++++|. +... .+..++.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAY-AHTIQKLYMGFNA-IRYL-PPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTT-CTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcC-CCCCCEEECCCCc-CCCC-CHHHHcCCCC
Confidence 46788888888888776555556778888888888865 33333334444 7888888888775 3321 1344667788
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (650)
|++|++++| .+....+..+..+++|++|++++|.++...+..+. .+++|++|++++|. +.... +..+++|+.|
T Consensus 125 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNR-LTHVD----LSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSC-CSBCC----GGGCTTCSEE
T ss_pred CCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCC-CCCcC----hhhhhhhhhh
Confidence 888888877 45433334457777888888888777655554454 56777777777764 32221 3456677777
Q ss_pred EccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCC
Q 006331 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (650)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (650)
+++++.. ... ...++|+.|++++|...... ....++|+.|++++|.+.+. ..+..+++|+.|++++
T Consensus 198 ~l~~n~l-~~l------~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 198 NVSYNLL-STL------AIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ECCSSCC-SEE------ECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred hcccCcc-ccc------cCCchhheeeccCCcccccc-----cccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCC
Confidence 7766642 211 13346666666665421110 01234566666666655542 3455566666666666
Q ss_pred CCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCC
Q 006331 440 CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGC 517 (650)
Q Consensus 440 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (650)
| .++......+. .+++|+.|++++|. ++. ++.....+++|+.|++++| .++.. +..+..+++|+.|++++|
T Consensus 264 N-~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 264 N-ELEKIMYHPFV-KMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp S-CCCEEESGGGT-TCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSS-CCCCC-GGGHHHHTTCSEEECCSS
T ss_pred C-ccCCCCHHHhc-CccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCC-CCCcc-CcccccCCCCCEEECCCC
Confidence 5 45433222222 44555555555433 221 1111123445555555554 23321 122333444444444444
No 49
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.3e-18 Score=173.93 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=92.1
Q ss_pred HHHHhhcCCCCcEEEecCCcCCHhHHHHHHh---hcCCCcEEecCCCCC--CCh------HHHHHHHhcCCCCcEEEccC
Q 006331 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSG--VTD------EELSFVVQSHKELRKLDITC 363 (650)
Q Consensus 295 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~--~~~------~~~~~~~~~~~~L~~L~l~~ 363 (650)
++..+..+++|++|++++|.++...+..++. .+++|++|++++|.. +.. ..+...+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3445556677777777777777666555432 456677777766521 111 11222234556666666665
Q ss_pred CCCccHH---HHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhh---cC---------CCCcEEEecCCccChhhHH----
Q 006331 364 CRKITYA---SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QC---------QYLEELDITENEVNDEGLK---- 424 (650)
Q Consensus 364 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~~~~~~---- 424 (650)
|. +... .+......+++|+.|++++|. ++......+.. .+ ++|++|++++|.+.+....
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 54 2221 122233345555555555543 22222222221 11 5555555555555433222
Q ss_pred hhhcCCCCCeeecCCCCCCChhhHHHHH----hcCccCcEEeccCCCCCCHHHH---HHHHhcCCCCCEEeCCCCCCCCh
Q 006331 425 SISRCSKLSSLKLGICSNITDEGLKHVG----STCSMLKELDLYRSSGITDVGV---VAVSHGCPSLEMINIAYNERITD 497 (650)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~ 497 (650)
.+..+++|++|++++| .+++.+...+. ..+++|+.|++++|. +++.+. ......+++|++|++++| .+++
T Consensus 182 ~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~ 258 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSA 258 (386)
T ss_dssp HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCH
T ss_pred HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCch
Confidence 2334555555555555 55544433222 244455555555433 332222 222233445555555554 2444
Q ss_pred H
Q 006331 498 T 498 (650)
Q Consensus 498 ~ 498 (650)
.
T Consensus 259 ~ 259 (386)
T 2ca6_A 259 R 259 (386)
T ss_dssp H
T ss_pred h
Confidence 4
No 50
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.9e-19 Score=177.84 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=18.9
Q ss_pred hcCCCcEEecCCCCCCChHHHH---HHHhcCCCCcEEEccCC
Q 006331 326 WHGSLKELSLSKCSGVTDEELS---FVVQSHKELRKLDITCC 364 (650)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 364 (650)
.+++|++|++++|. +...... ..+..+++|+.|++++|
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 45566666666653 3333222 22334555666666554
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.3e-19 Score=177.06 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=115.4
Q ss_pred CCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccce
Q 006331 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (650)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 256 (650)
+++.++++++ .+..++.. -.++++.|++++|.+++..+..+.++++|++|++++|... ......+.. +++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAP-LVKLER 104 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTT-CTTCCE
T ss_pred CCeEEEecCC-CccccCcc----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcC-CCCCCE
Confidence 4556665554 22222211 2356677777777666555556666777777777665332 221222333 556666
Q ss_pred eecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecC
Q 006331 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (650)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (650)
|+++++. +.. .+..+ .++|++|++++|.+.......+. .+++|++|+++
T Consensus 105 L~Ls~n~-l~~---------------------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 153 (330)
T 1xku_A 105 LYLSKNQ-LKE---------------------------LPEKM--PKTLQELRVHENEITKVRKSVFN-GLNQMIVVELG 153 (330)
T ss_dssp EECCSSC-CSB---------------------------CCSSC--CTTCCEEECCSSCCCBBCHHHHT-TCTTCCEEECC
T ss_pred EECCCCc-CCc---------------------------cChhh--cccccEEECCCCcccccCHhHhc-CCccccEEECC
Confidence 6665543 111 11111 13555555555555544333333 45555555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCC
Q 006331 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (650)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (650)
++...........+..+++|+.|+++++.. ... + . ...++|++|++++|
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l---------~--------------~-------~~~~~L~~L~l~~n 202 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTI---------P--------------Q-------GLPPSLTELHLDGN 202 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSC---------C--------------S-------SCCTTCSEEECTTS
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcc-ccC---------C--------------c-------cccccCCEEECCCC
Confidence 543111001111233445555555544431 100 0 0 01255666666666
Q ss_pred ccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCC
Q 006331 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERIT 496 (650)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 496 (650)
.+.+..+..+..+++|+.|++++| .++......+ ..+++|+.|++++|. ++ .++.....+++|++|++++| .++
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSS-CCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCCC-cCC
Confidence 666555556666666666666666 5543322222 234555555555442 22 11112234455666666655 344
Q ss_pred hH
Q 006331 497 DT 498 (650)
Q Consensus 497 ~~ 498 (650)
..
T Consensus 277 ~~ 278 (330)
T 1xku_A 277 AI 278 (330)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3e-20 Score=181.69 Aligned_cols=275 Identities=15% Similarity=0.094 Sum_probs=135.7
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
++|+.|++++|. ++..+...+..+++|++|++++|.. +......+. .+++|++|++++|. +...+.. ..++|
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~Ls~n~-l~~l~~~----~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFA-PLVKLERLYLSKNQ-LKELPEK----MPKTL 123 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCC-CCBCTTTTT-TCTTCCEEECCSSC-CSBCCSS----CCTTC
T ss_pred CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcC-CeeCHHHhc-CCCCCCEEECCCCc-CCccChh----hcccc
Confidence 456666666554 4444333455566666666665542 221111222 25566666666552 2222221 13566
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCCh-hHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD-DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (650)
++|++++|.+....+..+.++++|++|++++|..... .....+.. +++|++|+++++. +... +.. ..++|++|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~-l~~l--~~~--~~~~L~~L 197 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTN-ITTI--PQG--LPPSLTEL 197 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSC-CCSC--CSS--CCTTCSEE
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEECCCCc-cccC--Ccc--ccccCCEE
Confidence 6666666666555455556666666666666543211 11122233 5666666666554 2211 111 12566666
Q ss_pred hcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 006331 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (650)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (650)
+++++ .+....+..+..+++|++|++++|.++......+. .+++|++|++++|. +. .++..+..+++|+.|++++
T Consensus 198 ~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 198 HLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp ECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCS
T ss_pred ECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCC
Confidence 66665 34444455666667777777777666544333333 45666666666653 22 1122233445555555555
Q ss_pred CCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccCh--hhHHhhhcCCCCCeeecCCC
Q 006331 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND--EGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 440 (650)
|. ++......+. .. ......++++.+++++|.+.. ..+..+..+++++.+++++|
T Consensus 273 N~-i~~~~~~~f~--------------~~-------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 273 NN-ISAIGSNDFC--------------PP-------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SC-CCCCCTTSSS--------------CS-------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred Cc-CCccChhhcC--------------Cc-------ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 44 1111000000 00 000024677888888877654 33456667788888888876
No 53
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.7e-17 Score=163.98 Aligned_cols=254 Identities=12% Similarity=0.151 Sum_probs=148.3
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHH---HHHHhcCC-CCCEEEcCCCccCCHHHHHHHh---hc-
Q 006331 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI---NSITKTCT-SLTSLRMECCKLVSWEAFVLIG---QQ- 404 (650)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~~- 404 (650)
+.++.+. ++. .++.++...++|++|++++|. +++... ......++ +|+.|++++|. +++.....+. ..
T Consensus 3 ~~ls~n~-~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHP-GSN-PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCT-TCC-HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred ccccccc-chH-HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence 3455543 332 344555555668888888887 443332 23334566 78888888864 4433333333 12
Q ss_pred CCCCcEEEecCCccChhhHHhhh----cC-CCCCeeecCCCCCCChhhHHHHHh---c-CccCcEEeccCCCCCCHHHH-
Q 006331 405 CQYLEELDITENEVNDEGLKSIS----RC-SKLSSLKLGICSNITDEGLKHVGS---T-CSMLKELDLYRSSGITDVGV- 474 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~i~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~~~- 474 (650)
+++|++|++++|.+.+..+..+. .+ ++|++|++++| .+++.+...+.. . +++|++|++++|. +++.+.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~ 156 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD 156 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence 37888888888877766655443 33 78888888888 677666655442 2 3578888887753 443222
Q ss_pred --HHHHhcCC-CCCEEeCCCCCCCChHHHHHhh----cC-CCCcEEEecCCCCCChHHHH---HHHhc-CCCccEEecCC
Q 006331 475 --VAVSHGCP-SLEMINIAYNERITDTSLISLS----EC-LRLKVLEIRGCPRISAIGLS---AIAMG-CRQLAMLDIKK 542 (650)
Q Consensus 475 --~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~~~~---~~~~~-~~~L~~L~l~~ 542 (650)
......++ +|++|++++| .+++.....+. .+ ++|++|++++| .+++.+.. ..+.. .++|++|++++
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 22233344 7888888887 46665554433 34 47888888877 56664332 22333 35788888887
Q ss_pred CCCCChhhHHHHH---HhCCcCCeEEeecCC---CCcHHHHHHh-cCCCCCceeeecccC
Q 006331 543 CFNINDNGMIPLA---QYSQNLKQINLSYCS---VTDVGLIALA-SINCLQNMTILHVVG 595 (650)
Q Consensus 543 ~~~l~~~~~~~~~---~~~~~L~~L~l~~~~---i~~~~~~~~~-~l~~L~~L~l~~~~~ 595 (650)
| .+++.+...+. ..+++|+.|++++|. ++......+. .++.++.|...++.+
T Consensus 235 N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 235 N-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp S-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 7 67766554433 445777888888776 4444333332 344444444444443
No 54
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=5.7e-17 Score=160.28 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=124.0
Q ss_pred CCchhHHHHhhcCCCCcEEEecCCcCCHhHH----HHHHhhcC-CCcEEecCCCCCCChH---HHHHHHhcC-CCCcEEE
Q 006331 290 WVSADLSKCLHNFPMLQSIKFEDCPVARSGI----KAIGNWHG-SLKELSLSKCSGVTDE---ELSFVVQSH-KELRKLD 360 (650)
Q Consensus 290 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L~ 360 (650)
.+.+..+..+...++|++|++++|.+++... ..+. .++ +|++|++++|. +.+. .+...+... ++|++|+
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEE
Confidence 4454555555555557777777776665544 2232 344 56666666553 2221 122222222 4455555
Q ss_pred ccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcC-CCCcEEEecCCccChhhHHhhhc-----CCCCCe
Q 006331 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISR-----CSKLSS 434 (650)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~ 434 (650)
+++|. +++... ..+......+ ++|++|++++|.+.+.....+.. +++|++
T Consensus 87 Ls~n~-l~~~~~-----------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 87 LSGNF-LSYKSS-----------------------DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CCSSC-GGGSCH-----------------------HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred CcCCc-CChHHH-----------------------HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 55444 221111 1111111123 45555665555555544433322 245666
Q ss_pred eecCCCCCCChhhHHHHH---hcCc-cCcEEeccCCCCCCHH---HHHHHHhcC-CCCCEEeCCCCCCCChHHHHH----
Q 006331 435 LKLGICSNITDEGLKHVG---STCS-MLKELDLYRSSGITDV---GVVAVSHGC-PSLEMINIAYNERITDTSLIS---- 502 (650)
Q Consensus 435 L~l~~~~~i~~~~~~~l~---~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~---- 502 (650)
|++++| .+++.+...+. ..++ +|++|++++|. +++. .+......+ ++|++|++++| .+++.+...
T Consensus 143 L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~ 219 (362)
T 3goz_A 143 LNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYI 219 (362)
T ss_dssp EECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred EEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHH
Confidence 666666 55544433332 1233 56666666543 3221 222233334 36666666666 355533322
Q ss_pred hhc-CCCCcEEEecCCCCCChHHH---HHHHhcCCCccEEecCCCC--CCChhhHHHHH---HhCCcCCeEEeecCCCCc
Q 006331 503 LSE-CLRLKVLEIRGCPRISAIGL---SAIAMGCRQLAMLDIKKCF--NINDNGMIPLA---QYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 503 l~~-~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~ 573 (650)
+.. .++|++|++++| .+++.+. ...+..+++|+.|++++|. .+++.+...+. ..+++|+.|++++|++.+
T Consensus 220 l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 222 346667777666 5555433 3333455667777777662 24444444443 234556677777777665
Q ss_pred HH
Q 006331 574 VG 575 (650)
Q Consensus 574 ~~ 575 (650)
..
T Consensus 299 ~~ 300 (362)
T 3goz_A 299 SH 300 (362)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=3.4e-20 Score=181.36 Aligned_cols=269 Identities=14% Similarity=0.115 Sum_probs=150.8
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
++|+.|++++|. ++..+...+..+++|++|++++|. ++......+. .+++|++|++++| .+...+.. ..++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n-~l~~l~~~----~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS-PLRKLQKLYISKN-HLVEIPPN----LPSSL 125 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST-TCTTCCEEECCSS-CCCSCCSS----CCTTC
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh-CcCCCCEEECCCC-cCCccCcc----ccccC
Confidence 466666666665 444443456666777777776665 3322122222 2667777777766 33333322 23678
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCCh-hHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD-DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (650)
++|++++|.+....+..+.++++|++|++++|..... .....+.. + +|++|+++++. +.. ++.. ..++|++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~-l~~--l~~~--~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAK-LTG--IPKD--LPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSB-CSS--CCSS--SCSSCSCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCC-CCc--cCcc--ccCCCCEE
Confidence 8888888877765555677788888888887654211 11111222 3 77777777765 222 1111 12577777
Q ss_pred hcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 006331 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (650)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (650)
+++++ .+....+..+..+++|+.|++++|.+.......+. .+++|++|++++|. +. .++..+..+++|+.|++++
T Consensus 199 ~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 199 HLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp BCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCS
T ss_pred ECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCC
Confidence 77776 45444455666777777777777766654433343 55666666666653 22 1222234455555555555
Q ss_pred CCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHh-----hcCCCCcEEEecCCccC--hhhHHhhhcCCCCCeee
Q 006331 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG-----QQCQYLEELDITENEVN--DEGLKSISRCSKLSSLK 436 (650)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~ 436 (650)
|. ++. .....+. ...++|+.|++++|.+. ...+..+..+++|+.++
T Consensus 274 N~-l~~--------------------------~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 274 NN-ITK--------------------------VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp SC-CCB--------------------------CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CC-CCc--------------------------cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 43 111 1111111 02467888888888776 44556777889999999
Q ss_pred cCCC
Q 006331 437 LGIC 440 (650)
Q Consensus 437 l~~~ 440 (650)
+++|
T Consensus 327 l~~n 330 (332)
T 2ft3_A 327 FGNY 330 (332)
T ss_dssp C---
T ss_pred cccc
Confidence 9887
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=2.5e-20 Score=182.28 Aligned_cols=287 Identities=15% Similarity=0.108 Sum_probs=156.5
Q ss_pred ccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcE
Q 006331 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332 (650)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 332 (650)
+++.++++++. +.. ++.. -.++++.|+++++ .+....+..+..+++|++|++++|.++...+..+. .+++|++
T Consensus 34 ~l~~l~~~~~~-l~~--ip~~--~~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKA--VPKE--ISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQK 106 (332)
T ss_dssp ETTEEECCSSC-CSS--CCSC--CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCE
T ss_pred cCCEEECCCCC-ccc--cCCC--CCCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCE
Confidence 56777776654 221 1111 1245666666665 34433344555666666666666655544333333 4455555
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEE
Q 006331 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (650)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (650)
|+++++. +... . . ...++|++|++++|.. ..... .....+++|+.|+
T Consensus 107 L~L~~n~-l~~l--------------------------~--~--~~~~~L~~L~l~~n~i-~~~~~-~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 107 LYISKNH-LVEI--------------------------P--P--NLPSSLVELRIHDNRI-RKVPK-GVFSGLRNMNCIE 153 (332)
T ss_dssp EECCSSC-CCSC--------------------------C--S--SCCTTCCEEECCSSCC-CCCCS-GGGSSCSSCCEEE
T ss_pred EECCCCc-CCcc--------------------------C--c--cccccCCEEECCCCcc-CccCH-hHhCCCccCCEEE
Confidence 5555442 1100 0 0 0114555555555432 11111 1122567777777
Q ss_pred ecCCccCh--hhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCC
Q 006331 413 ITENEVND--EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIA 490 (650)
Q Consensus 413 l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 490 (650)
+++|.+.. ..+..+..+ +|+.|++++| .++.... ...++|+.|++++|. ++... ......+++|++|+++
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~----~~~~~L~~L~l~~n~-i~~~~-~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK----DLPETLNELHLDHNK-IQAIE-LEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS----SSCSSCSCCBCCSSC-CCCCC-TTSSTTCTTCSCCBCC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCc----cccCCCCEEECCCCc-CCccC-HHHhcCCCCCCEEECC
Confidence 77776653 223344444 7777777777 5553111 122577777777653 22111 1122356788888888
Q ss_pred CCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHh-----CCcCCeEE
Q 006331 491 YNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQY-----SQNLKQIN 565 (650)
Q Consensus 491 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----~~~L~~L~ 565 (650)
+| .++......+..+++|++|++++| .++. ++..+..+++|+.|++++| .++..+...+... .++|+.|+
T Consensus 226 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 226 HN-QIRMIENGSLSFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp SS-CCCCCCTTGGGGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred CC-cCCcCChhHhhCCCCCCEEECCCC-cCee--cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceE
Confidence 87 466666556777788888888887 6664 3344567778888888887 5665444333221 45677888
Q ss_pred eecCCCC--cHHHHHHhcCCCCCceeeec
Q 006331 566 LSYCSVT--DVGLIALASINCLQNMTILH 592 (650)
Q Consensus 566 l~~~~i~--~~~~~~~~~l~~L~~L~l~~ 592 (650)
+++|++. ...+..+..+++|+.+.+.+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred eecCcccccccCcccccccchhhhhhccc
Confidence 8888776 44445566677777766654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3e-19 Score=173.10 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=63.6
Q ss_pred CCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCc
Q 006331 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (650)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 459 (650)
++|+.|++++|... ... ...+++|++|++++|.+.......+..+++|+.|++++| .++......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCS-EEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccC-CcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCC
Confidence 55666666554321 111 113566777777777776655555666677777777776 555544444433455666
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCC
Q 006331 460 ELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGC 517 (650)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (650)
.|++++|. ++.. ... ..+++|++|++++| .++..... +..+++|+.|++++|
T Consensus 173 ~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 173 HLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNN 224 (317)
T ss_dssp EEECTTSC-CCEE--ECC-CCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTS
T ss_pred EEECCCCc-Cccc--ccc-cccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCC
Confidence 66665543 2211 000 12455555555555 34432221 334445555555554
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=3.7e-20 Score=178.87 Aligned_cols=226 Identities=15% Similarity=0.190 Sum_probs=102.2
Q ss_pred CCCceeecCCCCCCc--ccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 202 QEIRTLDLSYLPITE--KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.++++|+++++.+.+ ..+..+.++++|++|+++++..+....+..+.. +++|++|++++|. +. ..++..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~-l~-~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTN-VS-GAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEEC-CE-EECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCe-eC-CcCCHHHhCCCC
Confidence 345555555555554 455555555555555555311111111222333 5555555555543 11 112333445555
Q ss_pred cchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcC-CCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006331 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (650)
|++|+++++ .+.+..|..+..+++|++|++++|.+++..+..+. .++ +|++|+++++.. .. ..+..+..+. |+.
T Consensus 127 L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l-~~-~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 127 LVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL-TG-KIPPTFANLN-LAF 201 (313)
T ss_dssp CCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEE-EE-ECCGGGGGCC-CSE
T ss_pred CCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCee-ec-cCChHHhCCc-ccE
Confidence 555555555 33334455555566666666666655544343443 333 555555555421 10 0111122333 555
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecC
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (650)
|++++|.. .. ..+..+..+++|+.|++++|...... ..+ ..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 202 L~Ls~N~l-~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 202 VDLSRNML-EG-DASVLFGSDKNTQKIHLAKNSLAFDL--GKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp EECCSSEE-EE-CCGGGCCTTSCCSEEECCSSEECCBG--GGC-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred EECcCCcc-cC-cCCHHHhcCCCCCEEECCCCceeeec--Ccc-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 55555431 11 11111223445555555554322110 011 144556666666555554445555555555555555
Q ss_pred CC
Q 006331 439 IC 440 (650)
Q Consensus 439 ~~ 440 (650)
+|
T Consensus 277 ~N 278 (313)
T 1ogq_A 277 FN 278 (313)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=164.81 Aligned_cols=232 Identities=17% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCccc
Q 006331 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (650)
+++|++|++++|.+++..+..+.++++|++|++++|.. .......+.. +++|++|++++|. +........+..+++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~-l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKP-LSSLTFLNLLGNP-YKTLGETSLFSHLTKL 151 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTT-CTTCSEEECTTCC-CSSSCSSCSCTTCTTC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCC-CccCCEEECCCCC-CcccCchhhhccCCCC
Confidence 44444444444444433333444444444444444322 1111111222 4444444444443 1111000123344445
Q ss_pred chhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 006331 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (650)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (650)
++|++++|..+....+..+..+++|++|++++|.+....+..+. .+++|++|+++++. +... ....+..+++|+.|+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLE 228 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCc-cccc-hhhhhhhcccccEEE
Confidence 55555444223322333444455555555555544433333333 34445555554443 1111 112223345555555
Q ss_pred ccCCCCccHHHH--HHHHhcCCCCCEEEcCCCccCCHHHHHH---HhhcCCCCcEEEecCCccChhhHHhhhcCCCCCee
Q 006331 361 ITCCRKITYASI--NSITKTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (650)
Q Consensus 361 l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (650)
++++.. ..... .......+.++.++++++. +.+..... ....+++|++|++++|.+.......+..+++|++|
T Consensus 229 L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 229 LRDTDL-DTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp EESCBC-TTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcc-ccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence 554431 11000 0001223455555555533 33322211 12256667777777766664443334566666666
Q ss_pred ecCCC
Q 006331 436 KLGIC 440 (650)
Q Consensus 436 ~l~~~ 440 (650)
++++|
T Consensus 307 ~L~~N 311 (353)
T 2z80_A 307 WLHTN 311 (353)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 66666
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=5.9e-18 Score=167.00 Aligned_cols=261 Identities=14% Similarity=0.117 Sum_probs=126.4
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
++|++|++++|. ++..+...+..+++|++|++++|. ++......+. .+++|++|++++| .+...+...+ ..+++|
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFS-SLGSLEHLDLSYN-YLSNLSSSWF-KPLSSL 126 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS-CCSSCCHHHH-TTCTTC
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcC-CCCCCCEEECCCC-cCCcCCHhHh-CCCccC
Confidence 355555555554 444443345556666666666554 2222111222 2566666666666 3333333322 367777
Q ss_pred ceeecCCCCCCcccc-cccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchh
Q 006331 205 RTLDLSYLPITEKCL-PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (650)
++|++++|.+..... ..+.++++|++|++++|..+.......+.. +++|++|++++|. +... .+..+..+++|++|
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L 203 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASD-LQSY-EPKSLKSIQNVSHL 203 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETT-CCEE-CTTTTTTCSEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEEECCCCC-cCcc-CHHHHhccccCCee
Confidence 777777777664333 356667777777777764444332223333 5666666666554 1111 12233444455555
Q ss_pred hcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 006331 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (650)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (650)
+++++ .+.......+..+++|+.|++++|.++...+..+ ........++.+++.+
T Consensus 204 ~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------------------------~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 204 ILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL------------------------STGETNSLIKKFTFRN 258 (353)
T ss_dssp EEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------CCCCCCEEEEES
T ss_pred cCCCC-ccccchhhhhhhcccccEEECCCCcccccccccc------------------------ccccccchhhcccccc
Confidence 55444 2222222223334455555555554432211110 0112344555555555
Q ss_pred CCCccHHH---HHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChh
Q 006331 364 CRKITYAS---INSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (650)
Q Consensus 364 ~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (650)
+. +.+.. ++.....+++|+.|++++|.. +. ....+...+++|++|++++|.+...
T Consensus 259 ~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~-i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 259 VK-ITDESLFQVMKLLNQISGLLELEFSRNQL-KS-VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CB-CCHHHHHHHHHHHHTCTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cc-ccCcchhhhHHHHhcccCCCEEECCCCCC-Cc-cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 54 33222 222334566777777766543 21 1112223567778888877776544
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-18 Score=169.03 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=138.5
Q ss_pred hcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcC
Q 006331 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (650)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (650)
.+++|++|+++++. +... .+..+..+++|+.|++++|....... +..+++|+.|++++|... . +. ..
T Consensus 32 ~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~-~-----l~-~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQI-SAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-E-----LL-VG 98 (317)
T ss_dssp TGGGCSEEECTTSC-CCCC-CHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEE-E-----EE-EC
T ss_pred cCCCCCEEECcCCc-cCcC-CHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCccc-c-----cc-CC
Confidence 44455555555543 2211 12334555666666666554221111 345667777777775422 1 11 35
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++|++|++++|.+...... .+++|++|++++| .++......+ ..+++|+.|++++|. ++......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCCC-CCcccHHHHhhccCcCC
Confidence 7888888888887765432 3677888888888 6665433222 256778888887754 43222233334567788
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| .++... ....+++|++|++++| .++... ..+..+++|+.|++++| .++.... ....+++|+.|+
T Consensus 173 ~L~L~~N-~l~~~~--~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~ 243 (317)
T 3o53_A 173 HLNLQYN-FIYDVK--GQVVFAKLKTLDLSSN-KLAFMG--PEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFD 243 (317)
T ss_dssp EEECTTS-CCCEEE--CCCCCTTCCEEECCSS-CCCEEC--GGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEE
T ss_pred EEECCCC-cCcccc--cccccccCCEEECCCC-cCCcch--hhhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEE
Confidence 8888887 455441 2224777777777777 665532 22556677777777777 5553221 123456777777
Q ss_pred eecCCCC-cHHHHHHhcCCCCCceeee
Q 006331 566 LSYCSVT-DVGLIALASINCLQNMTIL 591 (650)
Q Consensus 566 l~~~~i~-~~~~~~~~~l~~L~~L~l~ 591 (650)
+++|+++ +..+..+..++.|+.+.+.
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECC
Confidence 7777776 5555556666666666555
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=5e-19 Score=170.92 Aligned_cols=252 Identities=11% Similarity=0.059 Sum_probs=134.7
Q ss_pred cCcceeeccCCcCCCh-HhHHHHHhhCCCCceeeccc-ccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCC
Q 006331 150 KNLERLWLARCKLITD-LGIGRIAACCRKLKLLCLKW-CIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQY 227 (650)
Q Consensus 150 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 227 (650)
.++++|+++++...+. .....+. .+++|++|++++ +......+..+ ..+++|++|++++|.+++..+..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 4677788777753320 1112222 367777777774 43322333222 36677777777777766666666667777
Q ss_pred ccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCc-ccchhhcccCcCCchhHHHHhhcCCCCc
Q 006331 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD-YLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (650)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 306 (650)
|++|++++|...+. .+..+.. +++|++|++++|. +. ..++..+..++ +|++|+++++ .+.+..+..+..++ |+
T Consensus 127 L~~L~Ls~N~l~~~-~p~~~~~-l~~L~~L~L~~N~-l~-~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSGT-LPPSISS-LPNLVGITFDGNR-IS-GAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEESC-CCGGGGG-CTTCCEEECCSSC-CE-EECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CS
T ss_pred CCEEeCCCCccCCc-CChHHhc-CCCCCeEECcCCc-cc-CcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-cc
Confidence 77777766543211 1222333 5666666666554 11 11122333343 4455555444 23333344444443 44
Q ss_pred EEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEE
Q 006331 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (650)
Q Consensus 307 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (650)
+|++++|.+.+..+. .+..+++|+.|++++|...... .. ...+++|+.|+
T Consensus 201 ~L~Ls~N~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~~~--~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 201 FVDLSRNMLEGDASV---------------------------LFGSDKNTQKIHLAKNSLAFDL--GK-VGLSKNLNGLD 250 (313)
T ss_dssp EEECCSSEEEECCGG---------------------------GCCTTSCCSEEECCSSEECCBG--GG-CCCCTTCCEEE
T ss_pred EEECcCCcccCcCCH---------------------------HHhcCCCCCEEECCCCceeeec--Cc-ccccCCCCEEE
Confidence 444444444332222 2334555566666555421111 11 23467788888
Q ss_pred cCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCC
Q 006331 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (650)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i 443 (650)
+++|.. ....+..+. .+++|++|++++|.+.+..+.. ..+++|+.+++.+|+.+
T Consensus 251 Ls~N~l-~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 251 LRNNRI-YGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCSSCC-EECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CcCCcc-cCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 877653 222222333 7899999999999887655544 66888888888888433
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=5.9e-19 Score=170.52 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=20.2
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (650)
.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 4555555555555554444444555555555555555
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=1.2e-17 Score=170.66 Aligned_cols=227 Identities=19% Similarity=0.123 Sum_probs=133.5
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
+++++|++++|. ++.+....+..+++|++|++++|. +.......+. .+++|++|++++|. +...+...+ ..+++|
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFN-GLASLNTLELFDNW-LTVIPSGAF-EYLSKL 149 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSC-CSBCCTTTS-SSCTTC
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhcc-CcccCCEEECCCCc-CCccChhhh-cccCCC
Confidence 466667766665 444444556667777777777664 3322222222 26677777777763 333332222 357778
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (650)
++|++++|.+.......+.++++|+.|++++|..+.......+.. +++|++|++++|. +... ..+..+++|++|+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCN-IKDM---PNLTPLVGLEELE 224 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSC-CSSC---CCCTTCTTCCEEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCc-cccc---ccccccccccEEE
Confidence 888888887776555567778888888888766665544333444 7778888877765 2321 1345566777777
Q ss_pred cccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 006331 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (650)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (650)
+++| .+.+..+..+..+++|+.|++++|.+.......+. .+++|+.|++++|. +... ....+..+++|+.|++++|
T Consensus 225 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNN-LSSL-PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CSCC-CTTSSTTCTTCCEEECCSS
T ss_pred CcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCc-CCcc-ChHHhccccCCCEEEccCC
Confidence 7776 45555566677777777777777766654444443 55666666666653 2211 0112234455555555555
Q ss_pred C
Q 006331 365 R 365 (650)
Q Consensus 365 ~ 365 (650)
+
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=1e-17 Score=170.48 Aligned_cols=227 Identities=18% Similarity=0.149 Sum_probs=122.9
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
++++.|++++|. ++.+....+..+++|++|++++|. +.......+.. +++|++|++++| .+...+...+ ..+++|
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-LANLNTLELFDN-RLTTIPNGAF-VYLSKL 138 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT-CSSCCEEECCSS-CCSSCCTTTS-CSCSSC
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC-CccCCEEECCCC-cCCeeCHhHh-hccccC
Confidence 345555555554 333333445555566666665554 22221222222 566666666665 3333222211 256777
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (650)
++|++++|.+.......+.++++|++|++++|..+.......+.. +++|++|++++|. +... ..+..+++|++|+
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCN-LREI---PNLTPLIKLDELD 213 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSC-CSSC---CCCTTCSSCCEEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCc-Cccc---cccCCCcccCEEE
Confidence 777777777765555566677777777777765555443333444 6777777777764 2221 1245566677777
Q ss_pred cccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 006331 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (650)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (650)
+++| .+....+..+..+++|+.|++++|.++......+. .+++|++|++++|. +.... ...+..+++|+.|++++|
T Consensus 214 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 214 LSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNN-LTLLP-HDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSC-CCCCC-TTTTSSCTTCCEEECCSS
T ss_pred CCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCC-CCccC-hhHhccccCCCEEEcCCC
Confidence 7666 45545556666677777777777766654443343 45666666666653 22110 112334455555555555
Q ss_pred C
Q 006331 365 R 365 (650)
Q Consensus 365 ~ 365 (650)
+
T Consensus 290 p 290 (440)
T 3zyj_A 290 P 290 (440)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.5e-18 Score=167.65 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=114.2
Q ss_pred cCCCCCEEEcCCCccCCH-HHHHHHhh-cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChh-hH-HHH-H
Q 006331 378 TCTSLTSLRMECCKLVSW-EAFVLIGQ-QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GL-KHV-G 452 (650)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~-~~-~~l-~ 452 (650)
.+++|+.|++++|..... ..+..+.. ..++|++|++++|.+....+..+..+++|++|++++| .+... .. ..+ .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN-PELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC-TTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC-CcCcchHHHHHHHh
Confidence 455666666666442221 11111110 1378888888888888777777888888888888888 55432 11 122 1
Q ss_pred hcCccCcEEeccCCCCCCHHH-HHHHHhcCCCCCEEeCCCCCCCChHH-HHHhhcCCCCcEEEecCCCCCChHHHHHHHh
Q 006331 453 STCSMLKELDLYRSSGITDVG-VVAVSHGCPSLEMINIAYNERITDTS-LISLSECLRLKVLEIRGCPRISAIGLSAIAM 530 (650)
Q Consensus 453 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 530 (650)
..+++|++|++++|..-.... ...+...+++|++|++++| .++... ...+..+++|++|++++| .++. ++..+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ--VPKGLP 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSS--CCSSCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccCh--hhhhcc
Confidence 467888888888765332212 2234456788888888887 465543 233344678888888888 5653 222222
Q ss_pred cCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 531 GCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 531 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
++|++|++++| .++.... ...+++|+.|++++|++++
T Consensus 274 --~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCC-CCCCChh---HhhCCCCCEEeccCCCCCC
Confidence 67888888888 6655422 3456778888888887765
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=2.1e-18 Score=166.66 Aligned_cols=201 Identities=13% Similarity=0.136 Sum_probs=119.0
Q ss_pred cCCCCCEEEcCCCccCCHHHHHHH-hhcCCCCcEEEecCCccChhhHHhhhcC-----CCCCeeecCCCCCCChhhHHHH
Q 006331 378 TCTSLTSLRMECCKLVSWEAFVLI-GQQCQYLEELDITENEVNDEGLKSISRC-----SKLSSLKLGICSNITDEGLKHV 451 (650)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~i~~~~~~~l 451 (650)
.+++|++|++++|.. +...+..+ ...+++|++|++++|.+.+. +..+..+ ++|++|++++| .++......+
T Consensus 93 ~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred CcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 356677777766542 21111111 12678888888888887765 4444443 78888888888 6665443333
Q ss_pred HhcCccCcEEeccCCCCCCHHHHHHHH--hcCCCCCEEeCCCCCCCCh---HHHHHhhcCCCCcEEEecCCCCCChHHHH
Q 006331 452 GSTCSMLKELDLYRSSGITDVGVVAVS--HGCPSLEMINIAYNERITD---TSLISLSECLRLKVLEIRGCPRISAIGLS 526 (650)
Q Consensus 452 ~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 526 (650)
. .+++|+.|++++|...+..++.... ..+++|++|++++| .++. .....+..+++|++|++++| .+++....
T Consensus 170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 170 R-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp C-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred c-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 2 6778888888876644433333333 56778888888887 4662 22233456778888888887 55553211
Q ss_pred HHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeee
Q 006331 527 AIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 527 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
..+..+++|++|++++| .++.... ...++|+.|++++|++++. +. +..+++|++|++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPK----GLPAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCS----SCCSEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred hhhhhcCCCCEEECCCC-ccChhhh----hccCCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 22234577888888877 5553211 1125777888888877764 21 4444444444444
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-18 Score=167.03 Aligned_cols=134 Identities=14% Similarity=0.059 Sum_probs=55.2
Q ss_pred hCCCCceeecCCCCCCcccc-cccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCc
Q 006331 200 KCQEIRTLDLSYLPITEKCL-PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (650)
.+++|++|++++|.+..... ..+..+++|++|++++|... ......+.. +++|++|++++|. +.....+..+..++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG-LSSLEVLKMAGNS-FQENFLPDIFTELR 175 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTT-CTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhccc-CcCCCEEECCCCc-cccccchhHHhhCc
Confidence 34555555555554443222 33444555555555554321 111111222 4445555554443 11111122333444
Q ss_pred ccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+|++|++++| .+.+..+..+..+++|++|++++|.++......+. .+++|++|++++|
T Consensus 176 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N 233 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLN 233 (306)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCCEEECTTS
T ss_pred CCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCCEeECCCC
Confidence 4444444444 23333344444555555555555544432222222 3344444444444
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=6.1e-17 Score=154.50 Aligned_cols=204 Identities=18% Similarity=0.128 Sum_probs=97.9
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
+|++|+++++. ++..+...+..+++|++|+++++. ++......+. .+++|++|++++|..+...+...+ ..+++|+
T Consensus 33 ~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~ 108 (285)
T 1ozn_A 33 ASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATF-HGLGRLH 108 (285)
T ss_dssp TCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTT-TTCTTCC
T ss_pred CceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcC-CccCCCEEeCCCCCCccccCHHHh-cCCcCCC
Confidence 44444444443 333333334445555555555443 2221111111 245555555555532332221111 2456666
Q ss_pred eeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhc
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (650)
+|++++|.++...+..+.++++|++|++++|... ......+.. +++|++|++++|. +.... ...+..+++|++|++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD-LGNLTHLFLHGNR-ISSVP-ERAFRGLHSLDRLLL 184 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhcc-CCCccEEECCCCc-ccccC-HHHhcCccccCEEEC
Confidence 6666666666555555666666666666665332 211112222 5566666666553 22111 122444555555555
Q ss_pred ccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCC
Q 006331 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339 (650)
Q Consensus 286 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (650)
+++ .+.+..+..+..+++|+.|++++|.+++.....+. .+++|++|+++++.
T Consensus 185 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 185 HQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-PLRALQYLRLNDNP 236 (285)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-TCTTCCEEECCSSC
T ss_pred CCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-cCcccCEEeccCCC
Confidence 555 34444455555666666666666666554443343 45555555555554
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=3.9e-16 Score=163.15 Aligned_cols=229 Identities=19% Similarity=0.104 Sum_probs=125.8
Q ss_pred CCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCC
Q 006331 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (650)
Q Consensus 302 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (650)
+++|++|++++|.++.... .+++|++|++++|....... .+++|+.|++++|. +... ...+++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~-l~~l-----p~~l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQ-LTSL-----PVLPPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSC-CSCC-----CCCCTT
T ss_pred CCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCC-CCcC-----CCCCCC
Confidence 3455555555555442111 34555555555543111100 34556666665554 2211 112356
Q ss_pred CCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEE
Q 006331 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKEL 461 (650)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L 461 (650)
|++|++++|.... +....++|+.|++++|.+.... ..+++|+.|++++| .++. +...+++|+.|
T Consensus 143 L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L 206 (622)
T 3g06_A 143 LQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDN-QLAS-----LPTLPSELYKL 206 (622)
T ss_dssp CCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEE
T ss_pred CCEEECcCCcCCC------cCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCC-CCCC-----CCCccchhhEE
Confidence 6666666654321 1113456777777776665532 33567777777776 5543 11234677777
Q ss_pred eccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecC
Q 006331 462 DLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIK 541 (650)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 541 (650)
++++|. ++. +...+++|+.|++++| .++... ..+++|+.|++++| .++... . .+++|+.|+++
T Consensus 207 ~L~~N~-l~~-----l~~~~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp--~---~~~~L~~L~Ls 269 (622)
T 3g06_A 207 WAYNNR-LTS-----LPALPSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLP--M---LPSGLLSLSVY 269 (622)
T ss_dssp ECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCC--C---CCTTCCEEECC
T ss_pred ECcCCc-ccc-----cCCCCCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCC--c---ccccCcEEeCC
Confidence 777653 331 1123467777777777 455432 34677788888777 665432 2 45778888888
Q ss_pred CCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCC
Q 006331 542 KCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASIN 583 (650)
Q Consensus 542 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~ 583 (650)
+| .++... .....+++|+.|++++|++++..+..+..++
T Consensus 270 ~N-~L~~lp--~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RN-QLTRLP--ESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SS-CCCSCC--GGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-CCCcCC--HHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 77 565332 1234567788888888888777666655443
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=3.8e-17 Score=158.61 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=106.9
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
.++++.|+++++ .+..++... ..+++|++|++++|.+. ..+..++++++|++|++++|... .. +..+.. +++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l--~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~l-p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQA--FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL-PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCG--GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CC-CGGGGG-CTTC
T ss_pred ccceeEEEccCC-CchhcChhh--hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cC-cHHHhc-CcCC
Confidence 456666666665 233333222 24666666666666665 45555666666666666665432 11 222333 5666
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
++|++++|...... +..+.. . .....+..+++|++|++++|.++ ..+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~~--p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTEL--PEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCC--CSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCcccc--ChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEE
Confidence 66666654322111 111110 0 00001223555555555555544 2222222 445555555
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEec
Q 006331 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (650)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (650)
+++|.... ++..+..+++|+.|++++|..... .+..+..+++|+.|++++|..... .+..+. .+++|+.|+++
T Consensus 213 L~~N~l~~---l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~-~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNSPLSA---LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLDIH-RLTQLEKLDLR 285 (328)
T ss_dssp EESSCCCC---CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTTGG-GCTTCCEEECT
T ss_pred ccCCCCCc---CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchhhh-cCCCCCEEeCC
Confidence 55543211 111234455555555555443221 111122344555555555443221 111122 45666666666
Q ss_pred CCccChhhHHhhhcCCCCCeeecCCC
Q 006331 415 ENEVNDEGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (650)
+|.+.+..+..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 66555555566666666666665543
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=1.3e-17 Score=161.93 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=25.1
Q ss_pred hccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+..+++|++|++++| .+.+..|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 225 l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n 287 (328)
T 4fcg_A 225 IHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGC 287 (328)
T ss_dssp GGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTC
T ss_pred hccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCC
Confidence 333444444444443 22223333444444444444444443333332222 3344444444443
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=1e-15 Score=160.03 Aligned_cols=254 Identities=18% Similarity=0.126 Sum_probs=183.2
Q ss_pred ccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006331 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (650)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (650)
+++.|+++++ .+. .+|..+. ++|++|++++|.++.... .+++|++|++++|. +.. ++. .+++|++
T Consensus 41 ~l~~L~ls~n-~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~--lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGES-GLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQ-LTS--LPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSS-CCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCC-CSC--CCC---CCTTCCE
T ss_pred CCcEEEecCC-CcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCc-CCc--CCC---CCCCCCE
Confidence 4666666665 333 3444333 689999999998874222 56899999999986 332 111 6789999
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecC
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (650)
|++++|.. .... ..+++|+.|++++|.... +...+++|++|++++|.+.... ...++|+.|+++
T Consensus 106 L~Ls~N~l-~~l~-----~~l~~L~~L~L~~N~l~~------lp~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~ 169 (622)
T 3g06_A 106 LSIFSNPL-THLP-----ALPSGLCKLWIFGNQLTS------LPVLPPGLQELSVSDNQLASLP----ALPSELCKLWAY 169 (622)
T ss_dssp EEECSCCC-CCCC-----CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred EECcCCcC-CCCC-----CCCCCcCEEECCCCCCCc------CCCCCCCCCEEECcCCcCCCcC----CccCCCCEEECC
Confidence 99999863 3211 156899999999875332 1224589999999999887532 135789999999
Q ss_pred CCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCC
Q 006331 439 ICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCP 518 (650)
Q Consensus 439 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (650)
+| .++... ..+++|+.|++++|. ++. + ....++|+.|++++| .++... ..+++|++|++++|
T Consensus 170 ~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~--l---~~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N- 231 (622)
T 3g06_A 170 NN-QLTSLP-----MLPSGLQELSVSDNQ-LAS--L---PTLPSELYKLWAYNN-RLTSLP----ALPSGLKELIVSGN- 231 (622)
T ss_dssp SS-CCSCCC-----CCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSS-CCSSCC----CCCTTCCEEECCSS-
T ss_pred CC-CCCCCc-----ccCCCCcEEECCCCC-CCC--C---CCccchhhEEECcCC-cccccC----CCCCCCCEEEccCC-
Confidence 98 776533 467899999999865 442 1 124589999999998 466432 13588999999999
Q ss_pred CCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 519 RISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 519 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
.++... ..+++|+.|++++| .++.... .+++|+.|++++|.++.+ +..+..+++|+.|++.++
T Consensus 232 ~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 232 RLTSLP-----VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC
T ss_pred ccCcCC-----CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC
Confidence 777643 56689999999999 7764333 568999999999999854 556888999999988865
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=4.7e-17 Score=166.89 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=124.1
Q ss_pred cCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006331 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (650)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (650)
.+++|++|+++++ .+....+..+..+++|++|++++|.+++..+ +. .+++|++|++++|. +... ..
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~-l~~l------~~--- 97 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNY-VQEL------LV--- 97 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSE-EEEE------EE---
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCc-CCCC------CC---
Confidence 3346777777766 4554455566666677777777666553322 22 45555555555542 1110 11
Q ss_pred CcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCee
Q 006331 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (650)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (650)
.++|+.|++++|..... . ...+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 98 -----------------------~~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 98 -----------------------GPSIETLHAANNNISRV-S----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (487)
T ss_dssp -----------------------CTTCCEEECCSSCCCCE-E----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE
T ss_pred -----------------------CCCcCEEECcCCcCCCC-C----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEE
Confidence 24555555555432211 0 0134566666666666666555555666666666
Q ss_pred ecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEec
Q 006331 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIR 515 (650)
Q Consensus 436 ~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 515 (650)
++++| .++...+..+...+++|+.|++++|. ++.. .. ...+++|+.|++++| .++..... +..+++|+.|+++
T Consensus 150 ~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls 222 (487)
T 3oja_A 150 DLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KG-QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLR 222 (487)
T ss_dssp ECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--EC-CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECT
T ss_pred ECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cc-cccCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEec
Confidence 66666 55554444444455666666666544 2211 11 113566666666666 35543332 5556666666666
Q ss_pred CCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEee
Q 006331 516 GCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLS 567 (650)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 567 (650)
+| .++. ++..+..+++|+.|++++| .+...........++.|+.++++
T Consensus 223 ~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NN-KLVL--IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TS-CCCE--ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-cCcc--cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence 66 4543 2333445566666666666 34322333333344455554443
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=9.6e-17 Score=153.14 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=113.1
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|++|++++|.+.+..+..+..+++|++|++++|..++......+ ..+++|++|++++|.... . .......+++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~ 130 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQE-L-GPGLFRGLAA 130 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCCCC-C-CTTTTTTCTT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcCCE-E-CHhHhhCCcC
Confidence 556677777766666665555666667777777776632443322222 256677777776654221 1 1122335677
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCe
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQ 563 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 563 (650)
|++|++++| .++......+..+++|++|++++| .++... ...+..+++|++|++++| .++......+ ..+++|+.
T Consensus 131 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~ 205 (285)
T 1ozn_A 131 LQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMT 205 (285)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCE
T ss_pred CCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccCEEECCCC-cccccCHhHc-cCcccccE
Confidence 777777777 466555555667777888888777 565432 223456677888888877 5554332222 34577888
Q ss_pred EEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 564 INLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 564 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
|++++|.+++..+..+..+++|+.|++.+.
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 888888887777777777888888777754
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=3.8e-16 Score=159.53 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccc
Q 006331 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (650)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 255 (650)
+++++|++++|. +.......+ ..+++|++|++++|.+....+..|.++++|++|++++|.. .......+.. +++|+
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEY-LSKLR 150 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSS-CTTCC
T ss_pred CCccEEECcCCc-CceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhcc-cCCCC
Confidence 456666666552 222221111 2455666666666655554445555556666666655432 2211111222 45555
Q ss_pred eeecCCCC
Q 006331 256 ALNLSKCQ 263 (650)
Q Consensus 256 ~L~l~~~~ 263 (650)
+|++++|.
T Consensus 151 ~L~L~~N~ 158 (452)
T 3zyi_A 151 ELWLRNNP 158 (452)
T ss_dssp EEECCSCC
T ss_pred EEECCCCC
Confidence 55555543
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=3.9e-16 Score=158.82 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=30.7
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRS 466 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 466 (650)
.+++|+.|++++|.+....+..+..+++|+.|++++| .++...... ...+++|+.|++++|
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHN 289 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSS
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCC
Confidence 4455555555555555554455555555555555555 444322221 124455555555554
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=6.6e-15 Score=141.54 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=90.6
Q ss_pred cCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCC
Q 006331 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (650)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (650)
.+++|++|+++++.. ... + ....+++|+.|++++|....... +. .+++|++|++++|.+.+. ..+..+++
T Consensus 39 ~l~~L~~L~l~~~~i-~~l--~-~~~~l~~L~~L~L~~n~i~~~~~---~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGV-TTI--E-GVQYLNNLIGLELKDNQITDLAP---LK-NLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCC-CCC--T-TGGGCTTCCEEECCSSCCCCCGG---GT-TCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HcCCcCEEEeeCCCc-cCc--h-hhhccCCCCEEEccCCcCCCChh---Hc-cCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 345667777766642 211 1 12345666666666654322111 22 556666666666555443 24555566
Q ss_pred CCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcE
Q 006331 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKV 511 (650)
Q Consensus 432 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 511 (650)
|++|++++| .++.... ...+++|+.|++++|. ++.. .. ...+++|++|++++| .+++... +..+++|+.
T Consensus 109 L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 109 IKTLDLTST-QITDVTP---LAGLSNLQVLYLDLNQ-ITNI--SP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTT 177 (308)
T ss_dssp CCEEECTTS-CCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCE
T ss_pred CCEEECCCC-CCCCchh---hcCCCCCCEEECCCCc-cCcC--cc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCE
Confidence 666666665 4443221 2345555555555543 2211 11 234455555555555 3443222 444555555
Q ss_pred EEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCC
Q 006331 512 LEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVT 572 (650)
Q Consensus 512 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 572 (650)
|++++| .+++... +..+++|++|++++| .+++.. + ...+++|+.|++++|+++
T Consensus 178 L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEE
T ss_pred EECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeee
Confidence 555555 4443211 344455555555555 343322 1 233455555555555543
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=8.3e-16 Score=148.39 Aligned_cols=232 Identities=17% Similarity=0.103 Sum_probs=140.6
Q ss_pred CCCcEEEecCCcCCHhHHHHHHh--hcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHH-hcC
Q 006331 303 PMLQSIKFEDCPVARSGIKAIGN--WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT-KTC 379 (650)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~ 379 (650)
..++.+.+.++.++......+.. .+++|++|++++|.. .... +..+ . ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~-------------------------~~~~~ 116 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTM-PPLP-------------------------LEATG 116 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCC-CCCS-------------------------SSCCC
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccch-hhhh-------------------------hhccC
Confidence 35677778777776554443321 235566666666531 1100 0001 0 234
Q ss_pred CCCCEEEcCCCccCCH---HHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhh-HH--HHHh
Q 006331 380 TSLTSLRMECCKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEG-LK--HVGS 453 (650)
Q Consensus 380 ~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~-~~--~l~~ 453 (650)
++|+.|++++|..... .....+. .+++|++|++++|.+....+..+..+++|++|++++| .+.... +. ....
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN-PGLGERGLMAALCPH 194 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTT
T ss_pred CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC-CCccchhhhHHHhhh
Confidence 4555555555432211 1112233 6788888999888887777777888889999999988 554322 21 1124
Q ss_pred cCccCcEEeccCCCCCCHHHH-HHHHhcCCCCCEEeCCCCCCCChHHHHHhhcC---CCCcEEEecCCCCCChHHHHHHH
Q 006331 454 TCSMLKELDLYRSSGITDVGV-VAVSHGCPSLEMINIAYNERITDTSLISLSEC---LRLKVLEIRGCPRISAIGLSAIA 529 (650)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~~~~ 529 (650)
.+++|++|++++|..-..... ..+...+++|++|++++| .++...+..+..+ ++|++|++++| .++.. +..+
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l--p~~~ 270 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV--PKGL 270 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC--CSCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCch--hhhh
Confidence 678888888888653322222 223457788999999888 4766544444444 68888888888 66642 2222
Q ss_pred hcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 530 MGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 530 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
.++|++|++++| .++.... ...+++|+.|++++|++++
T Consensus 271 --~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 --PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred --cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCCCCC
Confidence 268888888888 6654322 2456888888888888775
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2.5e-16 Score=161.47 Aligned_cols=237 Identities=14% Similarity=0.049 Sum_probs=111.3
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++|++|++++|. +...+...+ ..+++|++|++++|.+++..+ +..+++|++|++++|... ... . .++|
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~-~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----V-GPSI 101 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----E-CTTC
T ss_pred CCCccEEEeeCCc-CCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----C-CCCc
Confidence 3467777776663 322222211 356666666666666654322 666666666666665321 111 1 3566
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEe
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 334 (650)
++|++++|. +.... ...+++|+.|++++| .+.+..+..+..+++|+.|++++|.+++..+..+...+++|+.|+
T Consensus 102 ~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 102 ETLHAANNN-ISRVS----CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CEEECCSSC-CCCEE----ECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CEEECcCCc-CCCCC----ccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 666666654 22111 122345555555554 333333444444555555555555544433333332344444444
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEec
Q 006331 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (650)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (650)
+++| .. ... .. ...+++|+.|++++|.. +... ..+. .+++|+.|+++
T Consensus 176 Ls~N--------------------------~l-~~~--~~-~~~l~~L~~L~Ls~N~l-~~~~-~~~~-~l~~L~~L~Ls 222 (487)
T 3oja_A 176 LQYN--------------------------FI-YDV--KG-QVVFAKLKTLDLSSNKL-AFMG-PEFQ-SAAGVTWISLR 222 (487)
T ss_dssp CTTS--------------------------CC-CEE--EC-CCCCTTCCEEECCSSCC-CEEC-GGGG-GGTTCSEEECT
T ss_pred cCCC--------------------------cc-ccc--cc-cccCCCCCEEECCCCCC-CCCC-HhHc-CCCCccEEEec
Confidence 4444 31 110 00 01234555555555432 1111 1122 45666666666
Q ss_pred CCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEec
Q 006331 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (650)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 463 (650)
+|.+.. .+..+..+++|+.|++++| .+....+......++.|+.+.+
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence 666654 2333555666666666666 5553344344444555544444
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=5.7e-15 Score=141.98 Aligned_cols=188 Identities=22% Similarity=0.278 Sum_probs=139.7
Q ss_pred CCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccC
Q 006331 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (650)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 458 (650)
+++|+.|++++|...... .+. .+++|++|++++|.+.+... +..+++|+.|++++| .++... . ...+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~---~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE---GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--A-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCT---TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--G-GTTCTTC
T ss_pred cCCcCEEEeeCCCccCch---hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch--h-hcCCCCC
Confidence 578999999987543322 233 78999999999998877654 778899999999998 676542 2 3478899
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 459 KELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+.|++++|. +++ +.. ...+++|++|++++| .++.... +..+++|+.|++++| .+++.. . +..+++|+.|
T Consensus 110 ~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L 178 (308)
T 1h6u_A 110 KTLDLTSTQ-ITD--VTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA-QVSDLT--P-LANLSKLTTL 178 (308)
T ss_dssp CEEECTTSC-CCC--CGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEE
T ss_pred CEEECCCCC-CCC--chh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC-cCCCCh--h-hcCCCCCCEE
Confidence 999998875 432 222 457889999999998 4665443 778889999999998 676643 2 6778899999
Q ss_pred ecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 539 DIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 539 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
++++| .+++... ...+++|+.|++++|++++.. .+..+++|+.|++.+.
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence 99988 6665443 356788999999999888765 3678888888888764
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=140.32 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=115.6
Q ss_pred CCCcEEEecCCccChhhHHhhhc-----CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHh-
Q 006331 406 QYLEELDITENEVNDEGLKSISR-----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSH- 479 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 479 (650)
++|+.|++++|.++......+.. +++|+.|++++| .+++.++..+...+++|+.|++++| .+++.+...+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 56666666666666655544432 256777777777 6776666666666667777777765 466655555432
Q ss_pred ---cCCCCCEEeCCCCCCCChHHHHHh----hcCCCCcEEEecCCCCCChHHHHH---HHhcCCCccEEecCCCCCCChh
Q 006331 480 ---GCPSLEMINIAYNERITDTSLISL----SECLRLKVLEIRGCPRISAIGLSA---IAMGCRQLAMLDIKKCFNINDN 549 (650)
Q Consensus 480 ---~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~ 549 (650)
..++|++|++++| .+++.+...+ ..+++|++|++++| .+++.+... .+...++|++|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 3467778888777 4766555544 45777888888887 677665433 3455677888888888 77777
Q ss_pred hHHHHHH---hCCcCCeEEeecCCCCcHHHHHHhcCCCCC
Q 006331 550 GMIPLAQ---YSQNLKQINLSYCSVTDVGLIALASINCLQ 586 (650)
Q Consensus 550 ~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 586 (650)
+...++. ..++|++|++++|.|++.+...+..+....
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCC
Confidence 7666553 457888888888888888877777665444
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=9e-16 Score=144.95 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=111.0
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++|+.|+++++.+... ..+..+++|+.|++++| .++... . ...+++|++|++++|. ++.. .......+++|+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGN-KLHDIS--A-LKELTNLTYLILTGNQ-LQSL-PNGVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCC-CCCCch--h-hcCCCCCCEEECCCCc-cCcc-ChhHhcCCcCCC
Confidence 4444444444444321 12344455555555554 333211 1 1244555555555442 2210 011123456677
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| .++......+..+++|++|++++| .++... +..+..+++|+.|++++| .++...... ...+++|+.|+
T Consensus 113 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGV-FDKLTQLKDLR 187 (272)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEE
T ss_pred EEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHH-hcCCccCCEEE
Confidence 7777666 455555455566777777777777 555431 223456677777777777 554332211 13457778888
Q ss_pred eecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCChhH
Q 006331 566 LSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQSF 628 (650)
Q Consensus 566 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~~~ 628 (650)
+++|++++..+..+..+++|+.|++.+.+-. +.|++|+.+++. +.+.|.+|..+
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 8888777766655677777777777654211 257788888887 77777777643
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=7.2e-16 Score=146.28 Aligned_cols=201 Identities=18% Similarity=0.079 Sum_probs=106.9
Q ss_pred CCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCc
Q 006331 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (650)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 459 (650)
++|+.|++++|. ++......+. .+++|++|++++|.+.......+..+++|++|++++| .++......+ ..+++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-SGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCC
T ss_pred CCccEEECCCCc-ccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhh-cCCcccc
Confidence 467777777754 2222222222 5677777777777776665556667777777777777 5554332222 2566777
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH-HHHhhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCcc
Q 006331 460 ELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTS-LISLSECLRLKVLEIRGCPRISAIGL--SAIAMGCRQLA 536 (650)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~ 536 (650)
+|++++|.... .. ......+++|++|++++| .++... +..+..+++|++|++++| .++.... ...+..++.|.
T Consensus 104 ~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 104 KLVAVETNLAS-LE-NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp EEECTTSCCCC-ST-TCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCC
T ss_pred EEECCCCCccc-cC-chhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccc
Confidence 77776654222 10 001234566777777666 344422 345556666677777666 4444311 11112223332
Q ss_pred -EEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeee
Q 006331 537 -MLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 537 -~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
.|++++| .++...... ....+|+.|++++|.++......+..+++|+.|++.
T Consensus 180 l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 180 LSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EEEECCSS-CCCEECTTS--SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred eeeecCCC-cccccCccc--cCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 5666666 444322111 112356666666666665544445555556655555
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.4e-15 Score=145.11 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=87.0
Q ss_pred cCCCCcEEEecCCccChhhH----HhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHH--
Q 006331 404 QCQYLEELDITENEVNDEGL----KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAV-- 477 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-- 477 (650)
.+++|++|++++|.+....+ ..+..+++|++|++++| .++......+ ..+++|++|++++|...++.++...
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHh
Confidence 45667777777766654221 23345666777777666 5543322222 2556666666666543333332211
Q ss_pred HhcCCCCCEEeCCCCCCCChHHH--H-HhhcCCCCcEEEecCCCCCChHHHHHHHhcC---CCccEEecCCCCCCChhhH
Q 006331 478 SHGCPSLEMINIAYNERITDTSL--I-SLSECLRLKVLEIRGCPRISAIGLSAIAMGC---RQLAMLDIKKCFNINDNGM 551 (650)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~--~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~ 551 (650)
...+++|++|++++| .++.... . .+..+++|++|++++| .+++.. +..+..+ ++|++|++++| .++....
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~-p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~ 268 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATV-NPSAPRCMWSSALNSLNLSFA-GLEQVPK 268 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCC-CSCCSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccc-hhhHHhccCcCcCCEEECCCC-CCCchhh
Confidence 134566666666666 3543221 1 2345666666666666 444421 1111222 46666666666 4442211
Q ss_pred HHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeee
Q 006331 552 IPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 552 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
..+++|+.|++++|++++.. .+..+++|+.|++.
T Consensus 269 ----~~~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 269 ----GLPAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLD 302 (310)
T ss_dssp ----CCCSCCSCEECCSCCCCSCC--CTTSCCCCSCEECS
T ss_pred ----hhcCCCCEEECCCCcCCCCc--hhhhCCCccEEECc
Confidence 11256666666666655431 12344444444443
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=2.5e-15 Score=141.92 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=85.2
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|++|++++|.+.+.....+..+++|++|++++| .++...... ...+++|+.|++++|. ++.. .......+++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 158 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGV-FDKLTNLTYLNLAHNQ-LQSL-PKGVFDKLTN 158 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHH-hccCCCCCEEECCCCc-cCcc-CHHHhccCcc
Confidence 4566666666666666555555566666666666666 554322211 1245566666665542 2211 0111234566
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCe
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQ 563 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 563 (650)
|++|++++| .++......+..+++|++|++++| .++... +..+..+++|+.|++++|+ +. ..+++|+.
T Consensus 159 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~ 226 (272)
T 3rfs_A 159 LTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP-WD--------CTCPGIRY 226 (272)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC-BC--------CCTTTTHH
T ss_pred CCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccC-HHHHhCCcCCCEEEccCCC-cc--------ccCcHHHH
Confidence 777777776 455554444556677777777776 455431 2334556667777777663 21 12456666
Q ss_pred EEeecCCCCcHHH
Q 006331 564 INLSYCSVTDVGL 576 (650)
Q Consensus 564 L~l~~~~i~~~~~ 576 (650)
++++.|.+++..+
T Consensus 227 l~~~~n~~~g~ip 239 (272)
T 3rfs_A 227 LSEWINKHSGVVR 239 (272)
T ss_dssp HHHHHHHTGGGBB
T ss_pred HHHHHHhCCCccc
Confidence 6666666554433
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=9.4e-15 Score=137.85 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=78.5
Q ss_pred CCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 006331 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEM 486 (650)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (650)
++++|+++++.+.......+..+++|++|++++| .++.... .....+++|++|++++|. ++... ...+..+++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPA-GIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCT-TTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeCh-hhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCE
Confidence 3444444444444333333444444444444444 3332111 111234444444444432 11100 011223455555
Q ss_pred EeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEe
Q 006331 487 INIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINL 566 (650)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 566 (650)
|++++| .++......+..+++|++|++++| .++... ...+..+++|++|++++| .++......+ ..+++|+.|++
T Consensus 114 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L 188 (270)
T 2o6q_A 114 LRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEGAF-DKLTELKTLKL 188 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEEC
T ss_pred EECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEecCC-cCcEeChhHh-ccCCCcCEEEC
Confidence 555555 344444444455555666666555 444321 122344555666666555 4433222111 23456666666
Q ss_pred ecCCCCcHHHHHHhcCCCCCceeeec
Q 006331 567 SYCSVTDVGLIALASINCLQNMTILH 592 (650)
Q Consensus 567 ~~~~i~~~~~~~~~~l~~L~~L~l~~ 592 (650)
++|+++......+..+++|+.|.+.+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCcCCHHHhccccCCCEEEecC
Confidence 66665554444455555555555543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=6e-15 Score=139.89 Aligned_cols=131 Identities=19% Similarity=0.111 Sum_probs=55.4
Q ss_pred ccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCC
Q 006331 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (650)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (650)
++|++|+++++...... ...+. .+++|++|++++|. ++..+...+..+++|++|++++|. ++......+. .+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFF-SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-GLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTT-TCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-TCTTC
T ss_pred CCccEEECCCCcccccC-HhHhc-cccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhc-CCccc
Confidence 45666666665532211 11222 55566666666554 344333345555555555555554 2211111111 14455
Q ss_pred ceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcc-cccccccCCCccEEecCCC
Q 006331 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK-CLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 236 (650)
++|++++|... ..+... ...+++|++|++++|.+... .+..+.++++|++|++++|
T Consensus 103 ~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 103 QKLVAVETNLA-SLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CEEECTTSCCC-CSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCCcc-ccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 55555444211 111100 02344444444444444332 2334444444444444443
No 89
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.8e-12 Score=127.23 Aligned_cols=189 Identities=16% Similarity=0.225 Sum_probs=118.6
Q ss_pred CCCCEEEcCCCccCCHHHHHHHhh----cCCCCcEEEecCCccChhhHHhhhc-CCCCCeeecCCCCCCChhhHHHHHh-
Q 006331 380 TSLTSLRMECCKLVSWEAFVLIGQ----QCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGS- 453 (650)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~i~~~~~~~l~~- 453 (650)
++|+.|++++|. ++......+.. ..++|++|++++|.+++.+...+.. +++|+.|++++| .+++.+...+..
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 456666666644 44433333332 2257777777777777666655543 567777777777 777766665542
Q ss_pred ---cCccCcEEeccCCCCCCHHHHHHHH---hcCCCCCEEeCCCCCCCChHHHHH----hhcCCCCcEEEecCCCCCChH
Q 006331 454 ---TCSMLKELDLYRSSGITDVGVVAVS---HGCPSLEMINIAYNERITDTSLIS----LSECLRLKVLEIRGCPRISAI 523 (650)
Q Consensus 454 ---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~l~~~ 523 (650)
..++|+.|++++|. +++.+...+. ..+++|++|++++| .+++.+... +...++|++|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 35678888887753 6665544443 45678888888888 477766443 345778888888888 77776
Q ss_pred HHHHH---HhcCCCccEEecCCCCCCChhhHHHHHHhC-Cc---CCeEE--eecCCCCcH
Q 006331 524 GLSAI---AMGCRQLAMLDIKKCFNINDNGMIPLAQYS-QN---LKQIN--LSYCSVTDV 574 (650)
Q Consensus 524 ~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~---L~~L~--l~~~~i~~~ 574 (650)
+...+ +..+++|++|++++| .+++.+...+.... +. |+.+. +..+.+++.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 55443 345688888888888 78888877766421 11 66666 566666544
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=3.4e-13 Score=128.25 Aligned_cols=170 Identities=23% Similarity=0.213 Sum_probs=99.3
Q ss_pred CCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccC
Q 006331 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (650)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 458 (650)
+++|+.|++++|...... .+. .+++|+.|++++|.+.+... +..+++|+.|++++| .++... . ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~---~~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ---GIQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS--S-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCT---TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG--G-GTTCTTC
T ss_pred cCcccEEEccCCCcccCh---hHh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh--h-hccCCCC
Confidence 467777777776432221 222 56777777777777766443 666777777777777 555422 1 2356677
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 459 KELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+.|++++|. +++. .....+++|+.|++++| .++.. ..+..+++|+.|++++| .+++... +..+++|+.|
T Consensus 115 ~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L 183 (291)
T 1h6t_A 115 KSLSLEHNG-ISDI---NGLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNL 183 (291)
T ss_dssp CEEECTTSC-CCCC---GGGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEE
T ss_pred CEEECCCCc-CCCC---hhhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEE
Confidence 777776654 3321 12335666777777666 35543 34556666666666666 5554321 4556666666
Q ss_pred ecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 539 DIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 539 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
++++| .+++... ...+++|+.|++++|+++.
T Consensus 184 ~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKN-HISDLRA---LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSS-CCCBCGG---GTTCTTCSEEEEEEEEEEC
T ss_pred ECCCC-cCCCChh---hccCCCCCEEECcCCcccC
Confidence 66666 5554321 2345666666666666544
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=1.8e-13 Score=122.07 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=96.2
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|++|+++++.+.+.. .+..+++|++|++++| .++... . ...+++|++|++++|. +++.... ....+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGKD-VTSDKIP-NLSGLTS 113 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECTT-CBGGGSC-CCTTCTT
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECCc-cCcccCh-hhcCCCC
Confidence 3456777777776665422 4566677777777776 554332 2 2256677777776643 3322121 1235678
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCe
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQ 563 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 563 (650)
|++|++++| .+++..+..+..+++|++|++++|..+++.. .+..+++|++|++++| .+++.. ....+++|+.
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCE
T ss_pred CCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCE
Confidence 888888887 5777667777778888888888884366642 3567788888888888 565543 2245678888
Q ss_pred EEeecCCCCc
Q 006331 564 INLSYCSVTD 573 (650)
Q Consensus 564 L~l~~~~i~~ 573 (650)
|++++|+|.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888887654
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=4.4e-13 Score=127.50 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (650)
+++|+.|+++++.+... ..+..+++|+.|++++| .++.... ...+++|+.|++++|. +++ +.. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKD--LSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCC--Chh-hccCCCC
Confidence 46677777777666543 23566777777777777 5554332 3466777777777654 332 122 3456777
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeE
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQI 564 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 564 (650)
++|++++| .+++. ..+..+++|+.|++++| .+++. ..+..+++|+.|++++| .+++... ...+++|+.|
T Consensus 115 ~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L 183 (291)
T 1h6t_A 115 KSLSLEHN-GISDI--NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNL 183 (291)
T ss_dssp CEEECTTS-CCCCC--GGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEE
T ss_pred CEEECCCC-cCCCC--hhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEE
Confidence 77777777 45543 34556777777777777 55553 34456677777777777 5554332 3456777777
Q ss_pred EeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 565 NLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 565 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
++++|.+++.. .+..+++|+.|++.+.
T Consensus 184 ~L~~N~i~~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 184 YLSKNHISDLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCBCG--GGTTCTTCSEEEEEEE
T ss_pred ECCCCcCCCCh--hhccCCCCCEEECcCC
Confidence 77777776643 3566777777776654
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=3.8e-14 Score=134.74 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=91.6
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++++.|++++|.+....+..+..+++|+.|++++| .++..... ..+++|+.|++++|. ++ .++.....+++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSSC-CS--SCCCCTTTCTTCC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCCc-CC--cCchhhccCCCCC
Confidence 45566666666555555555555666666666665 44432211 345566666666543 22 1222223456666
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| +++......+..+++|++|++++| .++.. .+..+..+++|+.|++++| .++..... ....+++|+.|+
T Consensus 104 ~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~ 178 (290)
T 1p9a_G 104 VLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLL 178 (290)
T ss_dssp EEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEE
T ss_pred EEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEE
Confidence 6666666 455554455556666666666666 45443 1223345566666666666 45432221 113356666666
Q ss_pred eecCCCCcHHHHHHhcCCCCCceeee
Q 006331 566 LSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 566 l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
+++|+++.+ +..+..+++|+.|.+.
T Consensus 179 L~~N~l~~i-p~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 179 LQENSLYTI-PKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCSSCCCCC-CTTTTTTCCCSEEECC
T ss_pred CCCCcCCcc-ChhhcccccCCeEEeC
Confidence 666666643 2223344556666655
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=4.7e-14 Score=133.03 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=20.7
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCC
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (650)
.+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 4555566666555555444444555566666666554
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=6.2e-15 Score=136.41 Aligned_cols=200 Identities=11% Similarity=0.061 Sum_probs=87.7
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
+|++|+++++. ++.++...+..+++|++|+++++..++......+ ..+++|++|++++|..+...+...+ ..+++|+
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLK 108 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSE-ECCTTCC
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCC
Confidence 34444444443 3333333344445555555554432221111111 1245555555554112322221111 2455666
Q ss_pred eeecCCCCCCcccccccccCCCcc---EEecCCCCCCChhHHHHHHhcCcccc-eeecCCCCCCChHHHHHhhccCcccc
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLE---DLVLEGCHGIDDDGLASVEYSCKSLK-ALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
+|++++|.++. .+ .+..+++|+ +|++++|..+.......+.. +++|+ +|+++++. +.... ...+.. ++|+
T Consensus 109 ~L~l~~n~l~~-lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~-l~~i~-~~~~~~-~~L~ 182 (239)
T 2xwt_C 109 FLGIFNTGLKM-FP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNG-FTSVQ-GYAFNG-TKLD 182 (239)
T ss_dssp EEEEEEECCCS-CC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-TBSSEEEEECCSCC-CCEEC-TTTTTT-CEEE
T ss_pred EEeCCCCCCcc-cc-ccccccccccccEEECCCCcchhhcCcccccc-hhcceeEEEcCCCC-CcccC-HhhcCC-CCCC
Confidence 66666665543 22 255555555 66666653333332222333 55666 66665543 22111 111222 4566
Q ss_pred hhhcccCcCCchhHHHHhhcC-CCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 282 QLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+|+++++..+....+..+..+ ++|+.|++++|.++..... .+++|+.|++.++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 666655532433333445555 6666666666655432111 3455555555543
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=9.9e-15 Score=135.04 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=77.6
Q ss_pred cCCCCcEEEecCCc-cChhhHHhhhcCCCCCeeecCC-CCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcC
Q 006331 404 QCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLGI-CSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGC 481 (650)
Q Consensus 404 ~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (650)
.+++|++|++++|. +.......+..+++|++|++++ | .++......+ ..+++|+.|++++|. ++. ++. ...+
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f-~~l~~L~~L~l~~n~-l~~--lp~-~~~l 126 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDAL-KELPLLKFLGIFNTG-LKM--FPD-LTKV 126 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSE-ECCTTCCEEEEEEEC-CCS--CCC-CTTC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHh-CCCCCCCEEeCCCCC-Ccc--ccc-cccc
Confidence 34455555555543 4444333444455555555554 3 3432221111 234455555554432 111 111 2234
Q ss_pred CCCC---EEeCCCCCCCChHHHHHhhcCCCCc-EEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHh
Q 006331 482 PSLE---MINIAYNERITDTSLISLSECLRLK-VLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQY 557 (650)
Q Consensus 482 ~~L~---~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 557 (650)
++|+ +|++++|..++......+..+++|+ +|++++| .++.... ..+.. ++|++|++++|+.++......+ ..
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~~~~-~~ 202 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG-YAFNG-TKLDAVYLNKNKYLTVIDKDAF-GG 202 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT-TTTTT-CEEEEEECTTCTTCCEECTTTT-TT
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH-hhcCC-CCCCEEEcCCCCCcccCCHHHh-hc
Confidence 4444 5555555334444444455556666 6666665 4443211 11112 4566666666632443222111 22
Q ss_pred C-CcCCeEEeecCCCCcHHHHHHhcCCCCCceeee
Q 006331 558 S-QNLKQINLSYCSVTDVGLIALASINCLQNMTIL 591 (650)
Q Consensus 558 ~-~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 591 (650)
+ ++|+.|++++|+++..... .+++|+.|.+.
T Consensus 203 l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp CSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred cccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 3 5666666666665543211 34445555544
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.35 E-value=2.6e-13 Score=128.90 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=43.9
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++|++|++++| .+...+... ..+++|++|++++|.++...+..|.++++|++|++++|... ......+.. +++|
T Consensus 76 l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~-l~~L 150 (290)
T 1p9a_G 76 LPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP-TPKL 150 (290)
T ss_dssp CTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTT-CTTC
T ss_pred CCcCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhccc-ccCC
Confidence 455555555554 222222111 35666777777777666555555666677777777665332 221111222 5566
Q ss_pred ceeecCCCC
Q 006331 255 KALNLSKCQ 263 (650)
Q Consensus 255 ~~L~l~~~~ 263 (650)
+.|++++|.
T Consensus 151 ~~L~L~~N~ 159 (290)
T 1p9a_G 151 EKLSLANNN 159 (290)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 666666554
No 98
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.34 E-value=1.8e-12 Score=109.49 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=49.7
Q ss_pred CCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhc---CCCCCEEeCCCCCCCChHHHHHhhcCC
Q 006331 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHG---CPSLEMINIAYNERITDTSLISLSECL 507 (650)
Q Consensus 431 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~~~ 507 (650)
+|+.|++++| .+++.++..+. .|++|+.|++++|..++|.++..+... +++|++|+|++|.++|+.+...+.+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4555555555 35555554442 555555555555555555555555431 245555555555555555555555555
Q ss_pred CCcEEEecCCCCCChH
Q 006331 508 RLKVLEIRGCPRISAI 523 (650)
Q Consensus 508 ~L~~L~l~~~~~l~~~ 523 (650)
+|++|++++|+.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 5666666666555554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=3.6e-13 Score=140.69 Aligned_cols=149 Identities=25% Similarity=0.230 Sum_probs=82.2
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|+.|++++|.+.+..+ +..+++|+.|++++| .++... . ...+++|+.|++++|. +.+ +. ....+++
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--~-l~~l~~L~~L~Ls~N~-l~~--l~-~l~~l~~ 132 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--S-LKDLKKLKSLSLEHNG-ISD--IN-GLVHLPQ 132 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT--T-STTCTTCCEEECTTSC-CCC--CG-GGGGCTT
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh--h-hccCCCCCEEEecCCC-CCC--Cc-cccCCCc
Confidence 45555555555555544332 445555555555555 444321 1 1245556666665543 221 11 1335667
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCe
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQ 563 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 563 (650)
|+.|+|++| .++.. ..+..+++|+.|+|++| .+++... +..+++|+.|+|++| .+++.. ....+++|+.
T Consensus 133 L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~ 201 (605)
T 1m9s_A 133 LESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDV 201 (605)
T ss_dssp CSEEECCSS-CCCCC--GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSE
T ss_pred cCEEECCCC-ccCCc--hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCCh---HHccCCCCCE
Confidence 777777766 35543 45556777777777777 5554321 556677777777777 555432 1244677777
Q ss_pred EEeecCCCCc
Q 006331 564 INLSYCSVTD 573 (650)
Q Consensus 564 L~l~~~~i~~ 573 (650)
|++++|+++.
T Consensus 202 L~L~~N~l~~ 211 (605)
T 1m9s_A 202 LELFSQECLN 211 (605)
T ss_dssp EECCSEEEEC
T ss_pred EEccCCcCcC
Confidence 7777776654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=1.5e-12 Score=116.13 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=58.7
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|++|++++|.+.+..+..+..+++|+.|++++| .+++..+..+. .+++|+.|++++|..+++. . ....+++
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~-~l~~l~~ 160 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI--M-PLKTLPE 160 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--G-GGGGCSS
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc--H-hhcCCCC
Confidence 5667777777777666655556666667777777766 66554444443 5566666666655433321 1 2334555
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCC
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGC 517 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (650)
|++|++++| .+++.. .+..+++|++|++++|
T Consensus 161 L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC
T ss_pred CCEEECCCC-CCcChH--HhccCCCCCEEEeeCc
Confidence 555555555 344322 3444555555555555
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=1.4e-12 Score=136.15 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=130.9
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.+++|+.|+++++.+... ..+..+++|+.|++++| .++.... ...+++|+.|++++|. ++. +. ....+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~-~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKD--LS-SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCC--CT-TSTTCTT
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCC--Ch-hhccCCC
Confidence 467888889988887664 35778999999999999 7775443 4588999999999875 442 22 3446899
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCe
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQ 563 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 563 (650)
|+.|++++| .++.. ..+..+++|+.|+|++| .+++. ..+..+++|+.|+|++| .++.... ...+++|+.
T Consensus 111 L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 111 LKSLSLEHN-GISDI--NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQN 179 (605)
T ss_dssp CCEEECTTS-CCCCC--GGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCE
T ss_pred CCEEEecCC-CCCCC--ccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCE
Confidence 999999999 47653 45778999999999999 77764 45678899999999999 6665433 456799999
Q ss_pred EEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 564 INLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 564 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
|+|++|.|++. ..+..+++|+.|.+.++
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence 99999999886 35788889998888865
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=8.4e-13 Score=122.92 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 006331 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEM 486 (650)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (650)
+++.|+++++.+.......+..+++|++|++++| .++......+ ..+++|+.|++++|. ++.. ....+..+++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANNQ-LASL-PLGVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCCc-cccc-ChhHhcccCCCCE
Confidence 4444555544444444444444455555555544 3332211111 133444444444332 1100 0011123445555
Q ss_pred EeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEe
Q 006331 487 INIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINL 566 (650)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 566 (650)
|++++| .++......+..+++|++|++++| .++... +..+..+++|++|++++| .++......+ ..+++|+.|++
T Consensus 112 L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l 186 (251)
T 3m19_A 112 LYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTNLQTLSLSTN-QLQSVPHGAF-DRLGKLQTITL 186 (251)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEEC
T ss_pred EEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccC-HHHcCcCcCCCEEECCCC-cCCccCHHHH-hCCCCCCEEEe
Confidence 555554 344333333444555555555555 443321 112334445555555555 3332221111 22345555555
Q ss_pred ecCCCC
Q 006331 567 SYCSVT 572 (650)
Q Consensus 567 ~~~~i~ 572 (650)
++|+++
T Consensus 187 ~~N~~~ 192 (251)
T 3m19_A 187 FGNQFD 192 (251)
T ss_dssp CSCCBC
T ss_pred eCCcee
Confidence 555543
No 103
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.28 E-value=9.2e-12 Score=105.13 Aligned_cols=104 Identities=14% Similarity=0.284 Sum_probs=90.9
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhc---CccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGST---CSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
.+|++|+++++.+++.+...+..|++|++|++++|..+++.++..+... +++|++|++++|..+++.|+..+. .++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 4699999999999999999999999999999999988999999999853 578999999999999999999886 689
Q ss_pred CCCEEeCCCCCCCChHHH--HHh-hcCCCCc
Q 006331 483 SLEMINIAYNERITDTSL--ISL-SECLRLK 510 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~--~~l-~~~~~L~ 510 (650)
+|++|++++|+.+++.+. ..+ ..+|+++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 999999999999998753 333 2477765
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=5.3e-13 Score=124.28 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=129.7
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
...++++++++.+.... ..+ .++++.|++++| .++......+ ..+++|++|++++|. ++.. ....+..+++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELG 86 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCCc-CCcc-CHhHhccCCcCC
Confidence 45778888887776432 222 368999999999 7765444333 378999999999864 4321 112234679999
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| .++......+..+++|++|++++| .++... +..+..+++|++|++++| .++......+ ..+++|+.|+
T Consensus 87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~ 161 (251)
T 3m19_A 87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLS 161 (251)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEE
T ss_pred EEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEE
Confidence 9999998 588777677788999999999999 776542 334567899999999999 6764433222 4568999999
Q ss_pred eecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 566 LSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 566 l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
+++|+++...+..+..+++|+.|++.+.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999998877777888888998888754
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=3.1e-12 Score=108.34 Aligned_cols=105 Identities=25% Similarity=0.314 Sum_probs=56.6
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQ 559 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 559 (650)
.+++|++|++++| .++.. ..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++.........++
T Consensus 40 ~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE 113 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCT
T ss_pred hcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCC
Confidence 4556666666665 34443 44455666666666666 44442 3444455666666666666 454433222234456
Q ss_pred cCCeEEeecCCCCcHHH---HHHhcCCCCCceee
Q 006331 560 NLKQINLSYCSVTDVGL---IALASINCLQNMTI 590 (650)
Q Consensus 560 ~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l 590 (650)
+|+.|++++|++++... ..+..+++|+.|++
T Consensus 114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666666666555433 34555555555544
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=1.3e-11 Score=115.27 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=82.9
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (650)
+++|+.|+++++.+.... .+..+++|+.|++++| .+++... ...+++|+.|++++|. ++. +.... . ++|
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~-~-~~L 108 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIP-S-ACL 108 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCC-C-SSC
T ss_pred cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCC--cCccc-c-Ccc
Confidence 455555555555544322 3445555555555555 4443322 2345555555555543 221 11111 1 677
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeE
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQI 564 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 564 (650)
++|++++| .++.. ..+..+++|+.|++++| .+++.. .+..+++|+.|++++| .+++. .....+++|+.|
T Consensus 109 ~~L~L~~N-~l~~~--~~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L 177 (263)
T 1xeu_A 109 SRLFLDNN-ELRDT--DSLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWI 177 (263)
T ss_dssp CEEECCSS-CCSBS--GGGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEE
T ss_pred cEEEccCC-ccCCC--hhhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEE
Confidence 77777777 45553 24666777777777777 566542 3556777777777777 55544 222446777777
Q ss_pred EeecCCCCc
Q 006331 565 NLSYCSVTD 573 (650)
Q Consensus 565 ~l~~~~i~~ 573 (650)
++++|+++.
T Consensus 178 ~l~~N~~~~ 186 (263)
T 1xeu_A 178 DLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEC
T ss_pred eCCCCcccC
Confidence 777777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=3.2e-12 Score=119.45 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=122.9
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
.++..++++++.+.+.. .+..+++|+.|++++| .++... . ...+++|+.|++++|. +++. .. ...+++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~ 88 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHNQ-ISDL--SP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSSC-CCCC--GG-GTTCSSCC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCCc-cCCC--hh-hccCCCCC
Confidence 34555667777776543 5667899999999999 777543 2 3478999999999875 4422 22 56789999
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| .++... .+.. ++|++|++++| .+++.. .+..+++|+.|++++| .+++.. ....+++|+.|+
T Consensus 89 ~L~L~~N-~l~~l~--~~~~-~~L~~L~L~~N-~l~~~~---~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~ 156 (263)
T 1xeu_A 89 ELSVNRN-RLKNLN--GIPS-ACLSRLFLDNN-ELRDTD---SLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLD 156 (263)
T ss_dssp EEECCSS-CCSCCT--TCCC-SSCCEEECCSS-CCSBSG---GGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEE
T ss_pred EEECCCC-ccCCcC--cccc-CcccEEEccCC-ccCCCh---hhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEE
Confidence 9999998 566532 2333 89999999999 777742 3678899999999999 777653 235678999999
Q ss_pred eecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 566 LSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 566 l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
+++|++++. ..+..+++|+.|++.+.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 999999887 56778888888888864
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.3e-12 Score=117.79 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=97.0
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++|++|+++++.+.......+..+++|++|++++| .++..... ....+++|++|++++|. ++.. .......+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG-VFNKLTSLTYLNLSTNQ-LQSL-PNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChh-hcCCCCCcCEEECCCCc-CCcc-CHhHhcCccCCC
Confidence 45666666666666555555566667777777766 55532211 12355666666666553 2211 011223567788
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEE
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQIN 565 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 565 (650)
+|++++| .++......+..+++|++|++++| .++... ...+..+++|+.|++++|+.. ..+++|+.|+
T Consensus 104 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~ 171 (208)
T 2o6s_A 104 ELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLS 171 (208)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHH
T ss_pred EEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCCee---------cCCCCHHHHH
Confidence 8888777 466555555667788888888887 555432 233456778888888888422 2356778888
Q ss_pred eecCCCCcHHHHHHhcC
Q 006331 566 LSYCSVTDVGLIALASI 582 (650)
Q Consensus 566 l~~~~i~~~~~~~~~~l 582 (650)
++.|.+++..+..++.+
T Consensus 172 ~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 172 EWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHCTTTBBCTTSSB
T ss_pred HHHHhCCceeeccCccc
Confidence 88777776555444433
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=4.9e-12 Score=109.60 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred CCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCc
Q 006331 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQN 560 (650)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 560 (650)
+++|++|++++| .++.. ..+..+++|++|++++| .++.. ++..+..+++|++|++++| .+++.........+++
T Consensus 48 l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 48 FVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC
T ss_pred CCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC
Confidence 344444444444 23332 23334444555555544 33331 2233333445555555544 3333221111123444
Q ss_pred CCeEEeecCCCCc
Q 006331 561 LKQINLSYCSVTD 573 (650)
Q Consensus 561 L~~L~l~~~~i~~ 573 (650)
|+.|++++|+++.
T Consensus 122 L~~L~l~~N~l~~ 134 (168)
T 2ell_A 122 LKSLDLFNCEVTN 134 (168)
T ss_dssp CCEEECCSSGGGT
T ss_pred CCEEEeeCCcCcc
Confidence 5555555554443
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=8.9e-11 Score=99.27 Aligned_cols=129 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred CCCCcEEEecCCccC-hhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 405 CQYLEELDITENEVN-DEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.++|+.|++++|.+. +..+..+..+++|+.|++++| .++.. .....+++|+.|++++|.... . ++.....+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~-~-~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSG-G-LEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCS-C-THHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccc-h-HHHHhhhCCC
Confidence 355666666666665 233334455666666666666 55533 112245555555555543221 1 2233334556
Q ss_pred CCEEeCCCCCCCChH-HHHHhhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCccEEecC
Q 006331 484 LEMINIAYNERITDT-SLISLSECLRLKVLEIRGCPRISAIGL--SAIAMGCRQLAMLDIK 541 (650)
Q Consensus 484 L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~ 541 (650)
|++|++++| .+++. .+..+..+++|++|++++| .+++... ...+..+++|+.|+++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 666666665 34443 2244555555666666555 4443311 1234455555555544
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=4.8e-13 Score=131.28 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=124.4
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
+++++|++++|. ++.++...|..+++|++|+|++|...+......+ ..+++++++....+..+..++...+ ..+++|
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYINPEAF-QNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEECTTSB-CCCTTC
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCcccccCchhh-hhcccc
Confidence 456677776665 5555555566777777777777654332211111 1255555544433324443332222 367788
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (650)
++|++++|.+.......+....++..|++.++..+.......+......++.|+++++. +.. ++.......+|+++.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~--i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQE--IHNSAFNGTQLDELN 183 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCE--ECTTSSTTEEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccC--CChhhccccchhHHh
Confidence 88888888776555555555667777777665555544333333323467778887765 332 122233456777777
Q ss_pred cccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 006331 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (650)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (650)
+.++..+....+..+..+++|++|++++|.++.... ..+.+|+.|.+.++...... + .+..+++|+.+++.
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~l--P-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKL--P-TLEKLVALMEASLT 254 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCC--C-CTTTCCSCCEEECS
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcC--C-CchhCcChhhCcCC
Confidence 776544543333456777888888888887764322 13456666666555433211 1 12344555555553
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=4.9e-12 Score=122.95 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=26.5
Q ss_pred cCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCC
Q 006331 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (650)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (650)
.+++++|.+++. +....+..+...+++|+.|+++++.
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~ 60 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE 60 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce
Confidence 467899999874 4444554444448999999998876
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=1e-11 Score=111.92 Aligned_cols=115 Identities=16% Similarity=-0.031 Sum_probs=63.4
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCccc
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 254 (650)
+++|++|++++|. +...+...+ ..+++|++|++++|.++...+..+..+++|++|++++|... ......+.. +++|
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~-l~~L 150 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVF-DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR-LTSL 150 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT-CTTC
T ss_pred CCCcCEEECCCCc-CCccCHhHh-cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhcc-CCCc
Confidence 4555555555552 222222111 25667777777777766544455666777777777775432 222222333 6777
Q ss_pred ceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCC
Q 006331 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (650)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 303 (650)
++|++++|.. ...+++|+.|++..+ .+.+.+|..++.++
T Consensus 151 ~~L~l~~N~~---------~~~~~~l~~L~~~~n-~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 151 QYIWLHDNPW---------DCTCPGIRYLSEWIN-KHSGVVRNSAGSVA 189 (208)
T ss_dssp CEEECCSCCB---------CCCTTTTHHHHHHHH-HCTTTBBCTTSSBC
T ss_pred cEEEecCCCe---------ecCCCCHHHHHHHHH-hCCceeeccCcccc
Confidence 7777777641 234566777776665 45555555554443
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.8e-11 Score=117.55 Aligned_cols=35 Identities=14% Similarity=-0.059 Sum_probs=21.5
Q ss_pred CCCCceeecCCCCCCcccccccccCCCccEEecCCC
Q 006331 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (650)
|++|+++++.. .+......+|.++++|+.+++.++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence 66677777666 555445555666666666666654
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=2.2e-11 Score=126.54 Aligned_cols=199 Identities=15% Similarity=0.119 Sum_probs=123.3
Q ss_pred hCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCC-----------ChHhHHHHHhhCCCCceee-cccccccc
Q 006331 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI-----------TDLGIGRIAACCRKLKLLC-LKWCIRVT 190 (650)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 190 (650)
.+++|+.|+++++. ++.++ ..+..+++|++|+++++... ...........+++|+.|+ ++.+ .+.
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cCccceeccCChhh-HHhhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 56777788887766 45554 56777888888877554210 0011222333467777777 4443 222
Q ss_pred hHHHHHHH------hhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCC
Q 006331 191 DLGVELVA------LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN 264 (650)
Q Consensus 191 ~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (650)
......+. -....|+.|++++|.+++ .+ .++.+++|+.|++++|... .. +..+.. +++|+.|++++|.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp-~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~-l~~L~~L~Ls~N~- 497 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-AL-PPALAA-LRCLEVLQASDNA- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CC-CGGGGG-CTTCCEEECCSSC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-Cc-CccccccCcEeecCccccc-cc-chhhhc-CCCCCEEECCCCC-
Confidence 22211110 023468999999998875 44 4888999999999987544 22 234454 8889999998876
Q ss_pred CChHHHHHhhccCcccchhhcccCcCCchhH-HHHhhcCCCCcEEEecCCcCCHhHH--HHHHhhcCCCcEEe
Q 006331 265 ISHVGLSSLIKGADYLQQLILAYSFWVSADL-SKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELS 334 (650)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~ 334 (650)
++. ++ .+..+++|++|++++| .+.+.. |..+..+++|+.|++++|.+++... ..+...+|+|+.|+
T Consensus 498 l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 498 LEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 343 23 5677788888888877 455444 7777788888888888887654321 12222455666554
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=2.9e-11 Score=104.73 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=55.8
Q ss_pred cCCCCcEEEecCCccC-hhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 404 QCQYLEELDITENEVN-DEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
..++|++|++++|.+. +..+..+..+++|+.|++++| .++.. .....+++|+.|++++|.... . ++.....++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENRIFG-G-LDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCCCCS-C-CCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCcCch-H-HHHHHhhCC
Confidence 3467888888887776 233444566777777777777 55543 122245556666665543221 1 222333345
Q ss_pred CCCEEeCCCCCCCChHH-HHHhhcCCCCcEEEecCC
Q 006331 483 SLEMINIAYNERITDTS-LISLSECLRLKVLEIRGC 517 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~ 517 (650)
+|++|++++| .+++.. ...+..+++|+.|++++|
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 5555555555 344321 133444445555555544
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=1.6e-11 Score=126.75 Aligned_cols=179 Identities=16% Similarity=0.090 Sum_probs=124.7
Q ss_pred CCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccC
Q 006331 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (650)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 458 (650)
+.+++.|++++|.. +. .+.. -+++|+.|++++|.+.... ..+++|+.|++++| .++.... +. .+|
T Consensus 58 ~~~L~~L~Ls~n~L-~~-lp~~---l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~--l~---~~L 122 (571)
T 3cvr_A 58 INQFSELQLNRLNL-SS-LPDN---LPPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE--LP---ASL 122 (571)
T ss_dssp HTTCSEEECCSSCC-SC-CCSC---CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC--CC---TTC
T ss_pred cCCccEEEeCCCCC-Cc-cCHh---HcCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch--hh---cCC
Confidence 35899999998753 32 1111 2478999999999888543 45789999999999 7775221 22 389
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 459 KELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+.|++++|. ++. ++. .+++|+.|++++| .++.... .+++|+.|++++| .++.. +. +. ++|+.|
T Consensus 123 ~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~L~~l--p~-l~--~~L~~L 185 (571)
T 3cvr_A 123 KHLDVDNNQ-LTM--LPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNN-QLTFL--PE-LP--ESLEAL 185 (571)
T ss_dssp CEEECCSSC-CSC--CCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSCC--CC-CC--TTCCEE
T ss_pred CEEECCCCc-CCC--CCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCC-CCCCc--ch-hh--CCCCEE
Confidence 999999865 442 222 5789999999998 4665332 5789999999999 67663 33 33 899999
Q ss_pred ecCCCCCCChhhHHHHHH----hCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecc
Q 006331 539 DIKKCFNINDNGMIPLAQ----YSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHV 593 (650)
Q Consensus 539 ~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 593 (650)
++++| .++.... +.. ..+.|+.|++++|.|+.+ +..+..+++|+.|++.+.
T Consensus 186 ~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 186 DVSTN-LLESLPA--VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN 240 (571)
T ss_dssp ECCSS-CCSSCCC--CC--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS
T ss_pred ECcCC-CCCchhh--HHHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC
Confidence 99999 6764333 111 112239999999999864 444556888888888764
No 118
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=2.8e-10 Score=110.46 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=72.9
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHh-cCccCcEEeccCCCC--CCHH---HHHHH
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGS-TCSMLKELDLYRSSG--ITDV---GVVAV 477 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~~---~~~~~ 477 (650)
.+|+|++|.++++.-.. ...+ ..++|++|++..| .++...+..+.. .+|+|+.|+++.+.. ..+. .+...
T Consensus 170 ~~P~L~~L~L~g~~~l~--l~~~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS--IGKK-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTCB--CCSC-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCce--eccc-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 55666666666541100 0111 2566666666666 566655555542 466666666642110 0000 01111
Q ss_pred H--hcCCCCCEEeCCCCCCCChHHHHHhh---cCCCCcEEEecCCCCCChHHHHHHH---hcCCCccEEecCCCCCCChh
Q 006331 478 S--HGCPSLEMINIAYNERITDTSLISLS---ECLRLKVLEIRGCPRISAIGLSAIA---MGCRQLAMLDIKKCFNINDN 549 (650)
Q Consensus 478 ~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~ 549 (650)
. ..+|+|++|++.+| .+++.....+. .+++|++|+++.| .+++.+...+. ..+++|+.|++++| .+++.
T Consensus 246 l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp SCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred HhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence 1 12455555555555 34443333333 2445555555554 45554433332 23455555555555 45555
Q ss_pred hHHHHHHhCCcCCeEEeecCC
Q 006331 550 GMIPLAQYSQNLKQINLSYCS 570 (650)
Q Consensus 550 ~~~~~~~~~~~L~~L~l~~~~ 570 (650)
+...+...+ ...+++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 554444322 2334554444
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2.6e-12 Score=133.44 Aligned_cols=125 Identities=13% Similarity=0.090 Sum_probs=88.0
Q ss_pred CCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcC
Q 006331 482 PSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNL 561 (650)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 561 (650)
..|+.|++++| .++... .+..+++|+.|++++| .++. ++..+..+++|+.|++++| .++... ....+++|
T Consensus 441 ~~L~~L~Ls~n-~l~~lp--~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~lp---~l~~l~~L 510 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALENVD---GVANLPRL 510 (567)
T ss_dssp TTCSEEECTTS-CCSSCC--CGGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCCG---GGTTCSSC
T ss_pred cCceEEEecCC-CCCCCc--CccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCCCc---ccCCCCCC
Confidence 46888888888 566543 2777888888998888 6764 4556778888888998888 666532 23567888
Q ss_pred CeEEeecCCCCcHH-HHHHhcCCCCCceeeecccCCC-HHHHHHHHHhCcccceeee
Q 006331 562 KQINLSYCSVTDVG-LIALASINCLQNMTILHVVGLT-PNGLVNALLRCQGLIKVKL 616 (650)
Q Consensus 562 ~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~l~l 616 (650)
+.|++++|.++... +..+..+++|+.|++.+.+-.. +......+..+|+|+.|++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 89999888888776 7778888888888887532100 1112234556888888763
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.04 E-value=1.2e-10 Score=120.21 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=83.0
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (650)
+++|+.|++++|.+..... +.. +|+.|++++| .++.... .+++|+.|++++|. ++. ++. .+++|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~--lp~---~l~~L 162 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLTMLPE-----LPALLEYINADNNQ-LTM--LPE---LPTSL 162 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSC--CCC---CCTTC
T ss_pred cCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCCCCCC-----cCccccEEeCCCCc-cCc--CCC---cCCCc
Confidence 4556666666655554221 222 6666666666 4443111 45666666666543 321 111 35677
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCc-------cEEecCCCCCCChhhHHHHHHh
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQL-------AMLDIKKCFNINDNGMIPLAQY 557 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~ 557 (650)
++|++++| .++.... +. ++|+.|++++| .++.. +. +. .+| +.|++++| .++.... ....
T Consensus 163 ~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N-~L~~l--p~-~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~ 228 (571)
T 3cvr_A 163 EVLSVRNN-QLTFLPE--LP--ESLEALDVSTN-LLESL--PA-VP--VRNHHSEETEIFFRCREN-RITHIPE--NILS 228 (571)
T ss_dssp CEEECCSS-CCSCCCC--CC--TTCCEEECCSS-CCSSC--CC-CC----------CCEEEECCSS-CCCCCCG--GGGG
T ss_pred CEEECCCC-CCCCcch--hh--CCCCEEECcCC-CCCch--hh-HH--HhhhcccccceEEecCCC-cceecCH--HHhc
Confidence 77777776 3554322 32 67777777777 55542 22 21 145 88888888 6654322 1123
Q ss_pred CCcCCeEEeecCCCCcHHHHHHhcCC
Q 006331 558 SQNLKQINLSYCSVTDVGLIALASIN 583 (650)
Q Consensus 558 ~~~L~~L~l~~~~i~~~~~~~~~~l~ 583 (650)
+++|+.|++++|+++...+..+..++
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 67888888888888877777666543
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.03 E-value=2.3e-12 Score=126.43 Aligned_cols=226 Identities=15% Similarity=0.073 Sum_probs=131.1
Q ss_pred CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (650)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (650)
+++++|+++++. ++.... ..+..+++|++|++++|..........+. .++++.++...++..++.++...+..++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCC-CSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBC-SCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CCCCEEEccCCc-CCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhh-cchhhhhhhcccCCcccccCchhhhhcc
Confidence 468889988876 332111 03567888999999888754433222223 6667766554443346666656778888
Q ss_pred CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccE
Q 006331 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (650)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 230 (650)
+|++|++++|....... ..+. ...++..+++.++..+...+...+......++.|++++|.++. .+.......+|++
T Consensus 105 ~L~~L~l~~n~l~~~~~-~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPD-VHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDE 181 (350)
T ss_dssp TCCEEEEEEECCSSCCC-CTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEE
T ss_pred ccccccccccccccCCc-hhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhH
Confidence 89999888876322111 1111 2456677777665555544433332233568888888888874 4444445677888
Q ss_pred EecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEe
Q 006331 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (650)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 310 (650)
|.+.++..++......+.. +++|++|++++|. ++... ...+..+++|+.+ ++..+. .+| .+..+++|+.+++
T Consensus 182 l~l~~~n~l~~i~~~~f~~-l~~L~~LdLs~N~-l~~lp-~~~~~~L~~L~~l---~~~~l~-~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHG-ASGPVILDISRTR-IHSLP-SYGLENLKKLRAR---STYNLK-KLP-TLEKLVALMEASL 253 (350)
T ss_dssp EECTTCTTCCCCCTTTTTT-EECCSEEECTTSC-CCCCC-SSSCTTCCEEECT---TCTTCC-CCC-CTTTCCSCCEEEC
T ss_pred HhhccCCcccCCCHHHhcc-CcccchhhcCCCC-cCccC-hhhhccchHhhhc---cCCCcC-cCC-CchhCcChhhCcC
Confidence 8887766666544433444 7888888888875 33221 1223333444433 332222 222 3556667777766
Q ss_pred cC
Q 006331 311 ED 312 (650)
Q Consensus 311 ~~ 312 (650)
..
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.03 E-value=4.5e-11 Score=117.72 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=109.2
Q ss_pred CCCcEEEecCCccChhhHHhhh-cCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSL 484 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (650)
+.++.|++++|.+.......+. .+++|+.|++++| .++......+ ..+++|+.|++++|. ++.. ....+..+++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNH-LHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCc-CCcC-CHHHhCCCcCC
Confidence 5688999999998887777776 7899999999998 7775443333 367888888888765 4321 11223467888
Q ss_pred CEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHH---hcCCCccEEecCCCCCCChhhHHHHHHhCCc-
Q 006331 485 EMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIA---MGCRQLAMLDIKKCFNINDNGMIPLAQYSQN- 560 (650)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~- 560 (650)
++|++++| .++......+..+++|+.|++++| .++.... ..+ ..+++|+.|++++| .++......+. .++.
T Consensus 115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~~ 189 (361)
T 2xot_A 115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KLPAW 189 (361)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECCSS-CCCCCCHHHHH-HSCHH
T ss_pred CEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hccHh
Confidence 88888888 577666667777888888888888 6665321 122 45688888888888 67655544332 2344
Q ss_pred -CCeEEeecCCCC
Q 006331 561 -LKQINLSYCSVT 572 (650)
Q Consensus 561 -L~~L~l~~~~i~ 572 (650)
++.|++++|++.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 477888888765
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=7.4e-11 Score=116.12 Aligned_cols=159 Identities=14% Similarity=0.068 Sum_probs=110.8
Q ss_pred CCCCCEEEcCCCccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccC
Q 006331 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (650)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 458 (650)
.+.++.|++++|. ++......+...+++|+.|++++|.+.......+..+++|+.|++++| .++...... ...+++|
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L 114 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFL-FSDLQAL 114 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTC
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHH-hCCCcCC
Confidence 3568899999865 333222212226789999999999998877778888999999999998 776543322 3478899
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHh---hcCCCCcEEEecCCCCCChHHHHHHHhcCCC-
Q 006331 459 KELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISL---SECLRLKVLEIRGCPRISAIGLSAIAMGCRQ- 534 (650)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~- 534 (650)
+.|++++|. ++.. ....+..+++|+.|++++| .++......+ ..+++|+.|++++| .++.... ..+..++.
T Consensus 115 ~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~~ 189 (361)
T 2xot_A 115 EVLLLYNNH-IVVV-DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL-TDLQKLPAW 189 (361)
T ss_dssp CEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCH-HHHHHSCHH
T ss_pred CEEECCCCc-ccEE-CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH-HHhhhccHh
Confidence 999998865 3321 1123346789999999998 5776555555 56889999999998 7776543 34455665
Q ss_pred -ccEEecCCCCC
Q 006331 535 -LAMLDIKKCFN 545 (650)
Q Consensus 535 -L~~L~l~~~~~ 545 (650)
|+.|++++|+.
T Consensus 190 ~l~~l~l~~N~~ 201 (361)
T 2xot_A 190 VKNGLYLHNNPL 201 (361)
T ss_dssp HHTTEECCSSCE
T ss_pred hcceEEecCCCc
Confidence 48899999853
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.01 E-value=8.8e-11 Score=106.42 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccc
Q 006331 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
++|+.|++++|.+....+..+..+++|+.|++++|.. .......+.. +++|++|++++|. +.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~-l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQG-LRSLNSLVLYGNK-ITELP-KSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTT-CSSCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhC-CcCCCEEECCCCc-CCccC-HhHccCCCCCC
Confidence 3455555555555544444455555555555555432 2221222232 4555555555543 22110 12233445555
Q ss_pred hhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
+|+++++ .+....+..+..+++|+.|++++|.++......+. .+++|+.|+++++
T Consensus 108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS-PLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSS
T ss_pred EEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh-CCCCCCEEEeCCC
Confidence 5555554 33333344555556666666666655433322222 3344444444443
No 125
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.00 E-value=1e-08 Score=89.69 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred HHHhcCccCcEEeccCCCCCCHHHHHHHHh---cCCCCCEEeCCCCCCCChHHHHHhh----cCCCCcEEEecCCCCCCh
Q 006331 450 HVGSTCSMLKELDLYRSSGITDVGVVAVSH---GCPSLEMINIAYNERITDTSLISLS----ECLRLKVLEIRGCPRISA 522 (650)
Q Consensus 450 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~ 522 (650)
......++|++|++++|..+++.++..+.. ..++|++|+|++| .+++.+...+. ..++|++|++++| .+++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 334455666666666553455555444432 3456667777666 46666544443 3566777777766 6666
Q ss_pred HHHHHHH---hcCCCccEEec--CCCCCCChhhHHHHH---HhCCcCCeEEeecCCCCcHH
Q 006331 523 IGLSAIA---MGCRQLAMLDI--KKCFNINDNGMIPLA---QYSQNLKQINLSYCSVTDVG 575 (650)
Q Consensus 523 ~~~~~~~---~~~~~L~~L~l--~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~ 575 (650)
.+...+. ...++|++|++ ++| .+++.+...++ ...++|++|++++|.+...+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 6544443 33456777777 556 66666655544 23466777777777665443
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=1e-10 Score=105.93 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLE 485 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (650)
++|+.|++++|.+.......+..+++|+.|++++| .++......+ ..+++|+.|++++|. ++.. ....+.++++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l-~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNK-ITEL-PKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSC-CCCC-CTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCc-CCcc-CHhHccCCCCCC
Confidence 35666666666665554445555666666666666 4443222222 244555555555432 2210 011123455666
Q ss_pred EEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCC
Q 006331 486 MINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (650)
+|++++| .++......+..+++|+.|++++| .++... +..+..+++|+.|++++|
T Consensus 108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 6666665 355544445555666666666665 444321 122334455555555555
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=104.05 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=71.4
Q ss_pred cccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCC
Q 006331 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (650)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (650)
.+.++.|+++++..........+ ..+++|++|++++|. ++.++...+..+++|++|++++|.. +......+ ..+++
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~-~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~-~~l~~ 106 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIF-KKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL-ENVQHKMF-KGLES 106 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCG-GGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-CCCCGGGG-TTCSS
T ss_pred CCCCCEEEcCCCcCCccCchhhh-ccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCcc-CccCHhHh-cCCcC
Confidence 34556777776653322111112 266677777777666 5554444566667777777776653 22111112 22566
Q ss_pred CceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCC
Q 006331 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGI 239 (650)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 239 (650)
|++|++++|. +.......+ ..+++|++|++++|.++...+..+..+++|+.|++++|...
T Consensus 107 L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSC-CCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCc-CCeECHhHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666666653 222211111 24566666666666665555555666666666666665443
No 128
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.4e-09 Score=102.86 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=42.2
Q ss_pred hcCCCcEEecCCCCC----C---ChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHHHH
Q 006331 326 WHGSLKELSLSKCSG----V---TDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF 398 (650)
Q Consensus 326 ~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 398 (650)
.+++|+.|.+.+... + ....+..++..+|+|++|.+.++..... .. . ..++|+.|.+..|. ++....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCC-CChHHH
Confidence 567888887754321 0 0112445556667777777766521111 11 0 24566666665543 444444
Q ss_pred HHHhh-cCCCCcEEEec
Q 006331 399 VLIGQ-QCQYLEELDIT 414 (650)
Q Consensus 399 ~~~~~-~~~~L~~L~l~ 414 (650)
..++. .+|+|+.|+++
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 44432 45666666654
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.97 E-value=1.7e-10 Score=104.45 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=26.8
Q ss_pred ccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCC
Q 006331 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (650)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (650)
..+++|++|+++++ .+....+..+..+++|+.|++++|.++...+..+. .+++|+.|+++++
T Consensus 102 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N 163 (220)
T 2v70_A 102 KGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLAN 163 (220)
T ss_dssp TTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSC
T ss_pred cCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEEecCc
Confidence 33444444444444 23323334444455555555555554433332232 3444444444443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=2.7e-10 Score=99.23 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=45.9
Q ss_pred cCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCC
Q 006331 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECL 507 (650)
Q Consensus 428 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 507 (650)
.+++|+.|++++| .++.. ..+....++|+.|++++|. ++.. .....+++|++|++++| .++......+..++
T Consensus 17 ~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCC-cccccCcchhhcCC
Confidence 4566666666666 55422 2222223355555555543 2211 11223445555555554 24433222233444
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCC
Q 006331 508 RLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 508 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (650)
+|++|++++| .+++......+..+++|+.|++++|
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC
Confidence 4555555544 3333211112334444444444444
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.91 E-value=6.4e-10 Score=101.49 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccc
Q 006331 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
++|++|++++|.+....+..+..+++|++|++++|.. .......+.. +++|+.|++++|. +... ....+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~-l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDS-LTQLTVLDLGTNQ-LTVL-PSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT-CTTCCEEECCSSC-CCCC-CTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhccc-CCCcCEEECCCCc-CCcc-ChhHhCcchhhC
Confidence 5566666666666655555566666666666666542 2221111222 5556666665553 2211 012233445555
Q ss_pred hhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCC
Q 006331 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (650)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 316 (650)
+|+++++ .+. .+|..+..+++|+.|++++|.+.
T Consensus 116 ~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 116 ELFMCCN-KLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp EEECCSS-CCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred eEeccCC-ccc-ccCcccccCCCCCEEECCCCcCC
Confidence 5555544 232 33444455555555555555544
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=5.6e-10 Score=97.28 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=67.5
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcC-CCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCP 482 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (650)
.+++|++|++++|.+... ..+..+ ++|+.|++++| .++.. . ....+++|+.|++++|. ++.. .......++
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNNR-ICRI-GEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSSC-CCEE-CSCHHHHCT
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCCc-cccc-CcchhhcCC
Confidence 355666677766666543 223333 36677777666 55543 1 12355666677766653 3311 011223566
Q ss_pred CCCEEeCCCCCCCChHHH-HHhhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCccEEecCCC
Q 006331 483 SLEMINIAYNERITDTSL-ISLSECLRLKVLEIRGCPRISAIGL--SAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~ 543 (650)
+|++|++++| .+++... ..+..+++|+.|++++| .++.... ...+..+++|+.|++++|
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6777777666 3544332 34556666777777666 3333210 112445555555555555
No 133
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=4.5e-08 Score=85.49 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhh----cCCCCcEEEecCCCCCChHHHHHH---HhcCCCccEEecCCCC
Q 006331 472 VGVVAVSHGCPSLEMINIAYNERITDTSLISLS----ECLRLKVLEIRGCPRISAIGLSAI---AMGCRQLAMLDIKKCF 544 (650)
Q Consensus 472 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~ 544 (650)
..+.......+.|++|++++|..+++.+...+. ..++|++|++++| .+++.+...+ +...++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 345666667899999999998458887766654 4788999999999 7888765544 445678999999999
Q ss_pred CCChhhHHHHHH---hCCcCCeEEe--ecCCCCcHHHHHHh----cCCCCCceeeecc
Q 006331 545 NINDNGMIPLAQ---YSQNLKQINL--SYCSVTDVGLIALA----SINCLQNMTILHV 593 (650)
Q Consensus 545 ~l~~~~~~~~~~---~~~~L~~L~l--~~~~i~~~~~~~~~----~l~~L~~L~l~~~ 593 (650)
.|++.+...++. ..++|++|++ ++|.|++.+...++ ..++|++|++.++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 899888877763 3568999999 88899887765443 4466666666543
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.84 E-value=1.6e-09 Score=98.74 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=51.3
Q ss_pred CCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCccc
Q 006331 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (650)
+++|++|++++|.+....+..+..+++|+.|++++|.. .......+.. +++|++|++++|. +. .++..+..+++|
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~-l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L 137 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDR-LVHLKELFMCCNK-LT--ELPRGIERLTHL 137 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT-CTTCCEEECCSSC-CC--SCCTTGGGCTTC
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC-CccChhHhCc-chhhCeEeccCCc-cc--ccCcccccCCCC
Confidence 34444444444444332223334444444444444322 1111111122 4444444444443 22 122334455566
Q ss_pred chhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCC
Q 006331 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (650)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 316 (650)
++|++++| .+....+..+..+++|+.|++.+|.+.
T Consensus 138 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 138 THLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666655 343333345667788888888888765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=8.8e-11 Score=104.66 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=13.6
Q ss_pred CCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCC
Q 006331 405 CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (650)
+++|++|++++|.+.... .+..+++|+.|++++|
T Consensus 47 l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN 80 (198)
T ss_dssp TTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE
T ss_pred CCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC
Confidence 444444444444433311 3333444444444443
No 136
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.79 E-value=3e-09 Score=70.54 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
....+..||+||+.+||+ ||+ ..|+.+++.|||+|+.+...
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 456799999999999999 999 99999999999999998763
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=1.5e-09 Score=96.57 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=78.8
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQ 559 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 559 (650)
.+++|++|++++| .++... .+..+++|++|++++| .++. ++..+..+++|++|++++| .++... . ...++
T Consensus 46 ~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~-~~~l~ 115 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASLS--G-IEKLV 115 (198)
T ss_dssp HTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCHH--H-HHHHH
T ss_pred cCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcCC--c-cccCC
Confidence 4667777777776 455532 5566777777777777 5554 3344445577888888877 565432 2 23457
Q ss_pred cCCeEEeecCCCCcHHH-HHHhcCCCCCceeeecccCCCHHHH-----------HHHHHhCcccceee
Q 006331 560 NLKQINLSYCSVTDVGL-IALASINCLQNMTILHVVGLTPNGL-----------VNALLRCQGLIKVK 615 (650)
Q Consensus 560 ~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~L~~l~ 615 (650)
+|+.|++++|++++... ..+..+++|++|++.++ ...+. ...+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N---~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC---HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC---ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 78888888888777544 56777777777777643 22221 12467888888887
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=4.5e-10 Score=112.08 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=34.4
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEE
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAML 538 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (650)
+|.+|+.+.+..+ ++..+..+|.+|++|+++++..+ ++.. ...+.+|++|+.+
T Consensus 341 ~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGG--GGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEh--hheecCCCCCcEE
Confidence 5677777777653 56666667777888888888653 3332 2345666777654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=1.1e-08 Score=90.31 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCceeecCCCCCCccccc-ccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccc
Q 006331 203 EIRTLDLSYLPITEKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (650)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (650)
+|++|++++|.++...+. .+..+++|++|++++|.... .....+.. +++|++|++++|. +.... +..+..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~-l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEG-ASHIQELQLGENK-IKEIS-NKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTT-CTTCCEEECCSCC-CCEEC-SSSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-cCHhHcCC-cccCCEEECCCCc-CCccC-HHHhcCCCCCC
Confidence 555555555555433322 24455555555555543221 11122222 4455555555443 11110 11233344445
Q ss_pred hhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCC
Q 006331 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (650)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 316 (650)
+|+++++ .+....+..+..+++|++|++++|.+.
T Consensus 106 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5554444 333333444555555666666555544
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.56 E-value=2e-08 Score=88.68 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=77.8
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHH-HHHhcCcccceeecCCCCCCChHHHHHhhccCcccchh
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLA-SVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (650)
+.++++++.++ ..|..+. +++++|++++|.. ...... .+.. +++|++|++++|. +... .+..+..+++|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~~-l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGR-LPHLVKLELKRNQ-LTGI-EPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCC-CSBCCSCSGGG-CTTCCEEECCSSC-CCCB-CTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcC-CccCCcccccc-CCCCCEEECCCCC-CCCc-CHhHcCCcccCCEE
Confidence 67888888775 4455443 3899999998754 322221 1333 7888888888875 3221 13456667777777
Q ss_pred hcccCcCCchhHHHHhhcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCC
Q 006331 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339 (650)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (650)
+++++ .+....+..+..+++|++|++++|.++...+..+. .+++|++|+++++.
T Consensus 84 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 84 QLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred ECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCC
Confidence 77776 45544455566677777777777776654443333 45566666666554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.54 E-value=2.9e-09 Score=114.30 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=17.6
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (650)
.+++|+.|++++|.+... +..+..+++|+.|+|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N 257 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGN 257 (727)
T ss_dssp CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTS
T ss_pred cCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCC
Confidence 445555555555555422 222334555555555555
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.53 E-value=4.2e-08 Score=86.49 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCc
Q 006331 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (650)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (650)
+|++|++++|. ++.++ ..+..+++|++|++++|.. +......+. .+++|++|++++|. +...+...+ ..+++|+
T Consensus 32 ~l~~L~L~~n~-i~~ip-~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~-~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQ-FTLVP-KELSNYKHLTLIDLSNNRI-STLSNQSFS-NMTQLLTLILSYNR-LRCIPPRTF-DGLKSLR 105 (193)
T ss_dssp TCCEEECCSSC-CCSCC-GGGGGCTTCCEEECCSSCC-CCCCTTTTT-TCTTCCEEECCSSC-CCBCCTTTT-TTCTTCC
T ss_pred CCCEEECCCCc-CchhH-HHhhcccCCCEEECCCCcC-CEeCHhHcc-CCCCCCEEECCCCc-cCEeCHHHh-CCCCCCC
Confidence 44555555444 33333 3444555555555555442 211111111 24555555555542 222221111 2456666
Q ss_pred eeecCCCCCCcccccccccCCCccEEecCCCCCC
Q 006331 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGI 239 (650)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 239 (650)
+|++++|.++......+..+++|+.|++++|...
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666666666444445666666667766665543
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.50 E-value=3.6e-08 Score=86.92 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=53.8
Q ss_pred ccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCc
Q 006331 456 SMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQL 535 (650)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (650)
++|+.|++++|. ++. ++..+..+++|++|++++| .++......+..+++|++|++++| .++... +..+..+++|
T Consensus 31 ~~l~~L~L~~n~-i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~-~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIP-PRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSC-CCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTC
T ss_pred CCCCEEECCCCc-Cch--hHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeC-HHHhCCCCCC
Confidence 456666666543 331 2223345566666666666 355555455555666666666666 444431 2233445555
Q ss_pred cEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCC
Q 006331 536 AMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSV 571 (650)
Q Consensus 536 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i 571 (650)
+.|++++| .++...... ...+++|+.|++++|++
T Consensus 105 ~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGN-DISVVPEGA-FNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSCE
T ss_pred CEEECCCC-CCCeeChhh-hhcCccccEEEeCCCCe
Confidence 55555555 443222111 12345555555555553
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=7.1e-08 Score=83.93 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=53.4
Q ss_pred CCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCccc
Q 006331 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (650)
.++|++|++++|.+....+..+..+++|++|++++|.. .......+.. +++|++|++++|. +... ....+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~-l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK-LTKLTILYLHENK-LQSL-PNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT-CTTCCEEECCSSC-CCCC-CTTTTTTCTTC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC-CCccCEEECCCCC-cccc-CHHHhhCCccc
Confidence 35666666666666544444455666666666666532 2221111222 5556666665543 2211 01223344555
Q ss_pred chhhcccCcCCchhHHHHhhcCCCCcEEEecCCcCC
Q 006331 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (650)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 316 (650)
++|+++++ .+....+..+..+++|++|++++|.+.
T Consensus 103 ~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 55555544 333222223345556666666666554
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.49 E-value=3.7e-08 Score=105.81 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 006331 423 LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLIS 502 (650)
Q Consensus 423 ~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 502 (650)
+..+..+++|+.|++++| .+.... ..+. .+++|+.|++++|. ++ .++..+..+++|++|+|++| .++. .+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~-~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N-~l~~-lp~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNIS-ANIF-KYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHN-RLTS-LPAE 288 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCC-GGGG-GCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTS-CCSS-CCSS
T ss_pred hhhhccCCCCcEEECCCC-CCCCCC-hhhc-CCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCC-cCCc-cChh
Confidence 344556677777777777 554221 1122 56777777777653 33 12333345677777777776 3552 2445
Q ss_pred hhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCCcCCeEEeecCCCCc
Q 006331 503 LSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTD 573 (650)
Q Consensus 503 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 573 (650)
+..+++|++|+|++| .++. ++..+..+++|+.|+|++| .++......+......+..+++++|.++.
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hcCCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 566777777777776 5553 2333556677777777777 45432222221111122235566666554
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=4.4e-09 Score=104.87 Aligned_cols=218 Identities=17% Similarity=0.224 Sum_probs=103.1
Q ss_pred cccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHh
Q 006331 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (650)
Q Consensus 220 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (650)
.+|.++++|+.+.+.+.. .......+.. |.+|+.+.+..+. ...+ ...+..+..|+.+.+...... .....
T Consensus 156 ~aF~~c~~L~~i~l~~~~--~~I~~~~F~~-c~~L~~i~l~~~~--~~I~-~~~F~~~~~L~~i~~~~~~~~---i~~~~ 226 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM--ETLHNGLFSG-CGKLKSIKLPRNL--KIIR-DYCFAECILLENMEFPNSLYY---LGDFA 226 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--CEECTTTTTT-CTTCCBCCCCTTC--CEEC-TTTTTTCTTCCBCCCCTTCCE---ECTTT
T ss_pred hhhcccCCCcEEecCCcc--ceeccccccC-CCCceEEEcCCCc--eEeC-chhhccccccceeecCCCceE---eehhh
Confidence 344455566666554321 1111112222 5566666554431 1111 223445555555555433111 11112
Q ss_pred hcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCC-CChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhc
Q 006331 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSG-VTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (650)
Q Consensus 300 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (650)
....+|+.+.+.... +......+. .+..++.+.+..... +. ...+..+..++.+...... +.+ ..+..
T Consensus 227 ~~~~~l~~i~ip~~~-~~i~~~~f~-~~~~l~~~~~~~~~~~i~----~~~F~~~~~l~~~~~~~~~-i~~----~~F~~ 295 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF-TELGKSVFY-GCTDLESISIQNNKLRIG----GSLFYNCSGLKKVIYGSVI-VPE----KTFYG 295 (394)
T ss_dssp TTTCCCCEEEECTTC-CEECSSTTT-TCSSCCEEEECCTTCEEC----SCTTTTCTTCCEEEECSSE-ECT----TTTTT
T ss_pred cccCCCceEEECCCc-eeccccccc-ccccceeEEcCCCcceee----ccccccccccceeccCcee-ecc----ccccc
Confidence 233456666665431 111111111 456666666654311 11 1113455666666554432 111 12235
Q ss_pred CCCCCEEEcCCC-ccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCcc
Q 006331 379 CTSLTSLRMECC-KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (650)
Q Consensus 379 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 457 (650)
+.+|+.+.+... ..+... . ...|.+|+.+++.++ +...+..+|..|.+|+.+.+..+ ++..+...+ ..|++
T Consensus 296 ~~~L~~i~l~~~i~~I~~~---a-F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF-~~C~~ 367 (394)
T 4fs7_A 296 CSSLTEVKLLDSVKFIGEE---A-FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF-QGCIN 367 (394)
T ss_dssp CTTCCEEEECTTCCEECTT---T-TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTB-TTCTT
T ss_pred cccccccccccccceechh---h-hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHh-hCCCC
Confidence 667777776542 111111 1 226778888888643 55555667778888888888653 433332222 37788
Q ss_pred CcEEeccC
Q 006331 458 LKELDLYR 465 (650)
Q Consensus 458 L~~L~l~~ 465 (650)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 88888864
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.46 E-value=9.1e-08 Score=83.26 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred CCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCC
Q 006331 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (650)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (650)
++|++|+++++. ++..+...+..+++|++|+++++.. +......+ ..+++|++|++++|. +...+...+ ..+++|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVF-DKLTKLTILYLHENK-LQSLPNGVF-DKLTQL 102 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTC
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc-eEeChhHc-cCCCccCEEECCCCC-ccccCHHHh-hCCccc
Confidence 355555555554 3333333345555566666655542 21111111 124555555555552 222222111 245666
Q ss_pred ceeecCCCCCCcccccccccCCCccEEecCCCCCCC
Q 006331 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240 (650)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 240 (650)
++|++++|.++...+..+..+++|++|++++|....
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666666666654333344556666666666665443
No 148
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.43 E-value=3.9e-06 Score=72.29 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=62.3
Q ss_pred HHHHhcCccCcEEeccCCCCCCHHHHHHHHhc---CCCCCEEeCCCCCCCChHHHHHhh----cCCCCcEEEecCCCCCC
Q 006331 449 KHVGSTCSMLKELDLYRSSGITDVGVVAVSHG---CPSLEMINIAYNERITDTSLISLS----ECLRLKVLEIRGCPRIS 521 (650)
Q Consensus 449 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~ 521 (650)
..+...-+.|++|+++++..+++.+...++.. -+.|+.|+|++| .+++.+...+. ..+.|++|+|++| .|+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 33334445566666654445555555444432 246666666666 46665544443 3556666666666 566
Q ss_pred hHHHHHHHhcC---CCccEEecCCCC--CCChhhHHHHH---HhCCcCCeEEeecCC
Q 006331 522 AIGLSAIAMGC---RQLAMLDIKKCF--NINDNGMIPLA---QYSQNLKQINLSYCS 570 (650)
Q Consensus 522 ~~~~~~~~~~~---~~L~~L~l~~~~--~l~~~~~~~~~---~~~~~L~~L~l~~~~ 570 (650)
+.+...+...+ ..|++|++++|. .+.+.+...++ ..-++|+.|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 65555544332 446666665441 34544433333 233556666665443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=4e-09 Score=104.45 Aligned_cols=172 Identities=16% Similarity=0.287 Sum_probs=84.4
Q ss_pred cCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCC
Q 006331 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPS 483 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (650)
.|++|+.+++..+.+......++. +.+|+.+.+.. .++..+...+ ..|++|+.+++..+ ++..+-.++. + .+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF-~~~~~L~~l~l~~~--l~~I~~~aF~-~-~~ 249 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAF-LKTSQLKTIEIPEN--VSTIGQEAFR-E-SG 249 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTT-TTCTTCCCEECCTT--CCEECTTTTT-T-CC
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHh-hCCCCCCEEecCCC--ccCccccccc-c-CC
Confidence 455555665555555444444443 45566655543 2332222222 24555666655431 2211111111 1 45
Q ss_pred CCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCC-----hHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhC
Q 006331 484 LEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRIS-----AIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYS 558 (650)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 558 (650)
|+.+.+.. .++.....+|..|++|+++.+.++ .+. .. -...+.+|++|+.+.+.+ .++..+...+ ..|
T Consensus 250 L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c 322 (401)
T 4fdw_A 250 ITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILGQGLL-GGN 322 (401)
T ss_dssp CSEEEEET--TCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTT-TTC
T ss_pred ccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc-cccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCC
Confidence 66666644 255555556666666777766665 221 11 123445666666666663 2333332222 335
Q ss_pred CcCCeEEeecCCCCcHHHHHHhcCCCCCceeeec
Q 006331 559 QNLKQINLSYCSVTDVGLIALASINCLQNMTILH 592 (650)
Q Consensus 559 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 592 (650)
++|+.|.+..+ ++.++..+|.++ +|+.+.+..
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 66666666433 555555566666 666666653
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=2.7e-08 Score=98.50 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=138.8
Q ss_pred CCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCE
Q 006331 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEM 486 (650)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (650)
+|+.+.+.+ .+......+|..|++|+.+++.++ .++......+. +.+|+.+.+..+ ++..+-. .+.+|++|+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~--~~~L~~l~lp~~--l~~I~~~-aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV--YAGIEEVLLPVT--LKEIGSQ-AFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT--TCCCSEEECCTT--CCEECTT-TTTTCTTCCC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe--ecccCEEEeCCc--hheehhh-HhhCCCCCCE
Confidence 588888875 555666678889999999999987 66654444442 689999999743 4322212 2347899999
Q ss_pred EeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCC-----hhhHHHHHHhCCcC
Q 006331 487 INIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIN-----DNGMIPLAQYSQNL 561 (650)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L 561 (650)
+.+..+ ++..+..+|.. .+|+.+.+.. .++..+ ...+.+|++|+.+.+.++ .+. ..+...+ ..|++|
T Consensus 231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF-~~c~~L 302 (401)
T 4fdw_A 231 IEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIA-SRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCL-EGCPKL 302 (401)
T ss_dssp EECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEEC-TTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTT-TTCTTC
T ss_pred EecCCC--ccCcccccccc-CCccEEEeCC--CccEEC-hhHhhCCCCCCEEEeCCc-cccCCcccEECHHHh-hCCccC
Confidence 999874 67666667766 7899999965 355432 345678999999999887 332 1111111 457899
Q ss_pred CeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHH-HHHhCcccceeeeccccccCCC
Q 006331 562 KQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVN-ALLRCQGLIKVKLNASFRPLLP 625 (650)
Q Consensus 562 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~p 625 (650)
+.+++. +.++.++..+|.+|.+|+.+.+.. ++. .+.. .|.+| +|+.+++.++....++
T Consensus 303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~--~l~--~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPA--NVT--QINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CEECCC-TTCCEECTTTTTTCCSCCEEEECT--TCC--EECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CeEEeC-CceEEEhhhhhcCCCCccEEEECc--ccc--EEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 999998 458888888999999999999853 222 1111 35589 9999999854444443
No 151
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.26 E-value=1.9e-05 Score=68.05 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCEEEcCCCccCCHHHHHHHhh---cCCCCcEEEecCCccChhhHHhhh----cCCCCCeeecCCCCCC
Q 006331 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI 443 (650)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~i 443 (650)
.+..+...-++|++|+++++..+.+.+...+++ .-..|+.|++++|.+.+.+..+++ ..+.|++|+|++| .|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 334444444566666665544455555544443 234566666666666665544443 3456666666666 66
Q ss_pred ChhhHHHHHhcC---ccCcEEeccC
Q 006331 444 TDEGLKHVGSTC---SMLKELDLYR 465 (650)
Q Consensus 444 ~~~~~~~l~~~~---~~L~~L~l~~ 465 (650)
++.+...+.+.+ ..|++|++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCC
Confidence 666655554322 2455555543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.05 E-value=9.1e-07 Score=76.06 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=34.1
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCC
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHG 238 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (650)
+++|++|++++| .+...+...+ ..+++|++|++++|.++...+..+..+++|++|++++|..
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCC-CcCccChhhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 445555555554 2222222211 2566677777777766654444566677777777776654
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.03 E-value=3.1e-06 Score=72.66 Aligned_cols=55 Identities=15% Similarity=-0.057 Sum_probs=31.0
Q ss_pred CceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCC
Q 006331 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237 (650)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (650)
.+.++++++ .++.++.. -.++|++|++++|.++...+..|.++++|++|++++|.
T Consensus 11 ~~~l~~s~n-~l~~ip~~----~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTG----IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTS-CCSSCCSC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCC-CcCccCcc----CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 456666665 33333322 13566666666666665555556666666666666653
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=7.7e-07 Score=88.56 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKC 543 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (650)
+|.+|+.+.+..+ ++..+..+|.+|.+|+++.|..+ ++..+ ...+.+|.+|+.+++.++
T Consensus 309 ~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~-~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 309 GCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIP-ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCC-GGGGTTCTTCCEEEESSC
T ss_pred CCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEh-HhHhhCCCCCCEEEECCc
Confidence 4455555555432 34334444445555555555332 22221 123344455555555443
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.99 E-value=1.4e-06 Score=75.19 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCCCC
Q 006331 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHG 238 (650)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (650)
+++|++|++++| .+..++...+ ..+++|++|++++|.+....+..+..+++|++|++++|..
T Consensus 56 l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 56 LVNLQQLYFNSN-KLTAIPTGVF-DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CcCCCEEECCCC-CCCccChhHh-CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence 445555555554 2222222211 2566677777777766644444466677777777776654
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.96 E-value=5e-06 Score=71.61 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=29.7
Q ss_pred ceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccEEecCCC
Q 006331 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236 (650)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (650)
+.++++++ .++.++.. -.++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 15 ~~l~~~~n-~l~~iP~~----~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG----IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SEEECCSS-CCSSCCSC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCC-CCCccCCC----cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 45666655 33333322 1356666666666666555555666666666666665
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=9.6e-07 Score=87.89 Aligned_cols=323 Identities=13% Similarity=0.175 Sum_probs=146.0
Q ss_pred hCC-CCceeecCCCCCCChHHHHHHHhccCcceeeccCCc--CCChHhHHHHHhhCCCCceeecccccccchHHHHHHHh
Q 006331 123 NCR-FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCK--LITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVAL 199 (650)
Q Consensus 123 ~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (650)
.|. .|+.+.+... ++.+...+|..+.+|+.+.+..+. .++..+-.++.. |.+|+.+.+..+ +..++...+ .
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~aF-~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF-CSELTDIPILDS--VTEIDSEAF-H 134 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT-CTTCCBCGGGTT--CSEECTTTT-T
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh-cccceeeccCCc--cceehhhhh-h
Confidence 554 5899998753 677777788899999999886542 122222223333 778888877653 333333222 3
Q ss_pred hCCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcc
Q 006331 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (650)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (650)
.|.+|+.+.+... +.......+..+..|+.+.+... +.......+. ...|+.+.+.... ...+ ...+..+..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~--~~~l~~i~ip~~~--~~i~-~~af~~c~~ 206 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT--GTALTQIHIPAKV--TRIG-TNAFSECFA 206 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT--TCCCSEEEECTTC--CEEC-TTTTTTCTT
T ss_pred hhcccccccccce-eeeecccceecccccccccccce--eeEecccccc--ccceeEEEECCcc--cccc-cchhhhccc
Confidence 6788888888654 22233455666778888877653 2222122222 3567777765532 1111 123444444
Q ss_pred cchhhcccCcCCchhHHHHh-hcCCCCcEEEecCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006331 280 LQQLILAYSFWVSADLSKCL-HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (650)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (650)
++........... ....+ ........-.+.. . ....+..+.+... +...+ ...|..+..|+.
T Consensus 207 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~ip~~--v~~i~-~~aF~~c~~L~~ 269 (394)
T 4gt6_A 207 LSTITSDSESYPA--IDNVLYEKSANGDYALIRY-----------P-SQREDPAFKIPNG--VARIE-THAFDSCAYLAS 269 (394)
T ss_dssp CCEEEECCSSSCB--SSSCEEEECTTSCEEEEEC-----------C-TTCCCSEEECCTT--EEEEC-TTTTTTCSSCCE
T ss_pred cceeccccccccc--ccceeeccccccccccccc-----------c-cccccceEEcCCc--ceEcc-cceeeecccccE
Confidence 4444332221000 00000 0000000000000 0 0112222222210 00000 011344555555
Q ss_pred EEccCCCCccHHHHHHHHhcCCCCCEEEcCCC-ccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeec
Q 006331 359 LDITCCRKITYASINSITKTCTSLTSLRMECC-KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (650)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (650)
+.+..... ... ...+..+++|+.+.+... ..+... .+..|.+|+.+.+..+ +...+..+|..|.+|+.+.+
T Consensus 270 i~lp~~~~--~I~-~~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 270 VKMPDSVV--SIG-TGAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp EECCTTCC--EEC-TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred Eecccccc--eec-CcccccccccccccCCCcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 55533211 000 111234556666666431 111111 1225677777777642 44445556777777777777
Q ss_pred CCCCCCChhhHHHHHhcCccCcEEeccCCCCCCHHHHHHHHhcCCCCCEEeCCCC
Q 006331 438 GICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYN 492 (650)
Q Consensus 438 ~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 492 (650)
.. .++..+-..+ ..|.+|+.+++.++. . .. .....+..|+.+.+..+
T Consensus 342 p~--sv~~I~~~aF-~~C~~L~~i~~~~~~--~--~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 342 PS--SVTKIPESAF-SNCTALNNIEYSGSR--S--QW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CT--TCCBCCGGGG-TTCTTCCEEEESSCH--H--HH-HTCBCCCCC--------
T ss_pred Cc--ccCEEhHhHh-hCCCCCCEEEECCce--e--eh-hhhhccCCCCEEEeCCC
Confidence 54 2333222222 367777777776531 1 11 22335667777766543
No 158
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.61 E-value=2.5e-05 Score=71.73 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=37.2
Q ss_pred CCCCCCCcHHHHHHHHhhccCCccccc-chhhhhhhHHHHHHhh
Q 006331 9 SNPFDFLSEEIIFNILDHLNNDPFARK-SFSLTCRNFYSIESRH 51 (650)
Q Consensus 9 ~~~~~~LP~eil~~If~~~L~~~~~~~-~~~~vc~~w~~~~~~~ 51 (650)
...+..||+|++..||. ||| .+++. ++++|||+|+.++...
T Consensus 48 ~~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred ccChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 35889999999999999 999 99999 9999999999987643
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.53 E-value=5.9e-05 Score=73.52 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=52.6
Q ss_pred eecCCCCCCChHHHHHHHhccCcceeeccC-CcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceee
Q 006331 130 IDLSNGTEMGDAAAAAIAEAKNLERLWLAR-CKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLD 208 (650)
Q Consensus 130 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 208 (650)
++++++..++.++. +..+++|++|+|++ |. ++......+. .+++|+.|+|++|. +...+...+ ..+++|++|+
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~-l~~~~~~~~~-~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQH-LQHLELRDLR-GLGELRNLTIVKSG-LRFVAPDAF-HFTPRLSRLN 86 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSS-CCEECGGGSC-SCCCCSEEECCSSC-CCEECTTGG-GSCSCCCEEE
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCC-CCCcChhHhc-cccCCCEEECCCCc-cceeCHHHh-cCCcCCCEEe
Confidence 34444312444442 55555666666654 43 2222111122 25666666666652 332222221 3567777777
Q ss_pred cCCCCCCcccccccccCCCccEEecCCCCCCCh
Q 006331 209 LSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241 (650)
Q Consensus 209 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 241 (650)
|++|.++...+..+..++ |+.|++.+|....+
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 777777643333444444 77777777654433
No 160
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.43 E-value=2.6e-05 Score=70.40 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhh
Q 006331 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (650)
Q Consensus 11 ~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~ 51 (650)
.++.||+||+.+||+ ||+ ++|+.+++.|||+|+.++...
T Consensus 4 ~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999 999 999999999999999987654
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.42 E-value=6e-05 Score=73.46 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred hCCCCceeecCC-CCCCcccccccccCCCccEEecCCCCCCChhHHHHHHhcCcccceeecCCC
Q 006331 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (650)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (650)
.+++|++|+|++ |.+....+..|.++++|+.|+|++|. +.......+.. +++|++|++++|
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~-l~~L~~L~l~~N 90 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHF-TPRLSRLNLSFN 90 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGS-CSCCCEEECCSS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcC-CcCCCEEeCCCC
Confidence 455566666664 55554444555556666666666543 22222222222 455555555544
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00031 Score=64.26 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=5.2
Q ss_pred CCCCCEEeCCCC
Q 006331 481 CPSLEMINIAYN 492 (650)
Q Consensus 481 ~~~L~~L~l~~~ 492 (650)
+++|+.|+|++|
T Consensus 169 l~~L~~L~Ls~N 180 (267)
T 3rw6_A 169 IPELLSLNLSNN 180 (267)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 344444444444
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=0.00059 Score=62.37 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=8.7
Q ss_pred cCCCCcEEEecCCccCh
Q 006331 404 QCQYLEELDITENEVND 420 (650)
Q Consensus 404 ~~~~L~~L~l~~~~~~~ 420 (650)
.+++|+.|++++|.+.+
T Consensus 194 ~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKS 210 (267)
T ss_dssp HSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCccCC
Confidence 44555555555555543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=5.4e-05 Score=74.83 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=45.1
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhhHHHHHHhCC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQ 559 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 559 (650)
++..|+.+.+..+ ++..+..++..+.+|+.+.+... ++..+ ...+..|.+|+.+.+.++ .++..+...+ ..|.
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~-~~aF~~c~~L~~i~l~~~-~i~~I~~~aF-~~c~ 310 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVP-YLLCSGCSNLTKVVMDNS-AIETLEPRVF-MDCV 310 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEEC-TTTTTTCTTCCEEEECCT-TCCEECTTTT-TTCT
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecc-cccccccccccccccccc-ccceehhhhh-cCCC
Confidence 3455555555442 44444444445555555555432 22221 123344555555555444 3322221111 2344
Q ss_pred cCCeEEeecCCCCcHHHHHHhcCCCCCceee
Q 006331 560 NLKQINLSYCSVTDVGLIALASINCLQNMTI 590 (650)
Q Consensus 560 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 590 (650)
+|+.+.+..+ ++.++..+|.+|.+|+++.+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5555555332 44444445555555555544
No 165
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.93 E-value=0.00015 Score=74.00 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=38.9
Q ss_pred ccCCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
.-..|.+..||+||+.+||+ ||+ ..++.++++|||+|+++...
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 34468899999999999999 998 99999999999999998765
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.72 E-value=0.00012 Score=72.43 Aligned_cols=58 Identities=16% Similarity=0.375 Sum_probs=27.3
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIK 541 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 541 (650)
+|++|+.+.+.++ .++..+..+|.+|.+|+++.+.. .++..+ ...+.+|.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQ-VYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEH-HHHhhCCCCCCEEEEC
Confidence 4455555555443 24444444455555555555543 233221 1233455556655554
No 167
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.70 E-value=0.00063 Score=68.80 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=39.2
Q ss_pred cccCCCCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 5 RKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 5 ~~~~~~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
+....|.+..||+|++.+||+ ||+ ..++.+++.|||+|+.+...
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred ccccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 344578999999999999999 998 99999999999999988753
No 168
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.61 E-value=0.00038 Score=70.19 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=39.3
Q ss_pred cccCCCCCCCCcHH----HHHHHHhhccCCcccccchhhhhhhHHHHHHh
Q 006331 5 RKKNSNPFDFLSEE----IIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (650)
Q Consensus 5 ~~~~~~~~~~LP~e----il~~If~~~L~~~~~~~~~~~vc~~w~~~~~~ 50 (650)
+....|++..||+| |+.+||+ ||+ ..++.++++|||+|+++...
T Consensus 4 ~~~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 4 IMLQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcC
Confidence 33457889999999 9999999 998 99999999999999998764
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.80 E-value=1.2 Score=35.29 Aligned_cols=41 Identities=17% Similarity=-0.103 Sum_probs=30.3
Q ss_pred CCCCceeecCCCCCCcccccccccCCCccEEecCCCCCCCh
Q 006331 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241 (650)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 241 (650)
.++|++|+|++|.++......|..+++|+.|+|.+|...-+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 34688888888888766666677788888888888765433
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.22 E-value=1.3 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCC
Q 006331 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (650)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i 443 (650)
++|+.|+|++|.+.......+..+++|+.|+|.+|+..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888887777766666777778888888877444
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.44 E-value=8.7 Score=28.51 Aligned_cols=16 Identities=0% Similarity=0.023 Sum_probs=7.5
Q ss_pred HhhhcCCCCCeeecCC
Q 006331 424 KSISRCSKLSSLKLGI 439 (650)
Q Consensus 424 ~~l~~~~~L~~L~l~~ 439 (650)
.+|..|.+|+.+.|..
T Consensus 14 ~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP 29 (100)
T ss_dssp CTTTTCTTCCCEEECT
T ss_pred HHhcCCCCCcEEEcCC
Confidence 3444445555554443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.72 E-value=13 Score=27.61 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=15.2
Q ss_pred cCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecC
Q 006331 480 GCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRG 516 (650)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 516 (650)
+|.+|+.+.|... ++..+..+|.+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 3444444444442 3333334444444444444433
Done!