BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>006333
MPHLSTSFYSRPPNANRFHLNLRPSTSVLRLPNRKLIPAMSFSSSSASKMNTRQVKNPGT
TDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHR
TQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR
VNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNS
FLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKL
MGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALD
WKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVV
RKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALF
IHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKG
LSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATG
IGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA

High Scoring Gene Products

Symbol, full name Information P value
AT1G02020 protein from Arabidopsis thaliana 9.4e-217
MCA0222
Putative uncharacterized protein
protein from Methylococcus capsulatus str. Bath 4.5e-84
GSU0819
FMN-dependent polypeptide cyclic thioester oxidase, putative
protein from Geobacter sulfurreducens PCA 0.00050
GSU_0819
conserved hypothetical protein
protein from Geobacter sulfurreducens PCA 0.00050

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  006333
        (650 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2205639 - symbol:AT1G02020 species:3702 "Arabi...  2094  9.4e-217  1
UNIPROTKB|Q60C87 - symbol:MCA0222 "Putative uncharacteriz...   501  4.5e-84   2
UNIPROTKB|Q74EZ0 - symbol:GSU0819 "FMN-dependent polypept...   116  0.00050   1
TIGR_CMR|GSU_0819 - symbol:GSU_0819 "conserved hypothetic...   116  0.00050   1


>TAIR|locus:2205639 [details] [associations]
            symbol:AT1G02020 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0008152 "metabolic process" evidence=ISS]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016657
            "oxidoreductase activity, acting on NAD(P)H, nitrogenous group as
            acceptor" evidence=ISS] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR000415 Pfam:PF00881 EMBL:CP002684 GO:GO:0009507
            GO:GO:0016491 Gene3D:3.40.109.10 SUPFAM:SSF55469 GO:GO:0055114
            EMBL:U89959 eggNOG:COG0778 EMBL:AY070057 EMBL:AY122987
            IPI:IPI00547386 PIR:C86152 RefSeq:NP_171704.2 UniGene:At.28417
            ProteinModelPortal:O23673 PaxDb:O23673 PRIDE:O23673
            EnsemblPlants:AT1G02020.1 GeneID:837477 KEGG:ath:AT1G02020
            TAIR:At1g02020 HOGENOM:HOG000009405 InParanoid:O23673 OMA:MYPRLFW
            PhylomeDB:O23673 ProtClustDB:CLSN2690375 ArrayExpress:O23673
            Genevestigator:O23673 Uniprot:O23673
        Length = 642

 Score = 2094 (742.2 bits), Expect = 9.4e-217, P = 9.4e-217
 Identities = 406/634 (64%), Positives = 473/634 (74%)

Query:    25 STSVL---RLPNRKLIPAMXXXXXXXXKMNTRQVKNPGTTDPRK-LSHVLKYHDQTKHSF 80
             STS+L   R P    I AM          ++  V+NP   D    L  VLKYH+QTKHS 
Sbjct:    24 STSLLSIPRTPKSAFIFAMTFSSSSSSSSSSSSVENPNKDDSSSSLELVLKYHNQTKHSL 83

Query:    81 TKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSS 140
               YARGP GLDWANQPNPFRRY+SAPLLPL H PN   H     S        ++PLYS+
Sbjct:    84 NGYARGPRGLDWANQPNPFRRYLSAPLLPLQH-PN---HDIDDDS--------DSPLYST 131

Query:   141 LFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI 200
             LF SLPPP+P+++ +IS LFY SLALSAWKTTG STW LRVNPSSGNLHPTEAY+IAP I
Sbjct:   132 LFDSLPPPKPISLPTISHLFYHSLALSAWKTTGSSTWPLRVNPSSGNLHPTEAYLIAPPI 191

Query:   201 ESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA 260
              SL  S FV+HYAPKEH+LE+RA IPS F  F NFFP+NSFL+G SSIFWREAWKYGERA
Sbjct:   192 PSLSQSAFVSHYAPKEHSLEVRAHIPSSF--FPNFFPENSFLIGISSIFWREAWKYGERA 249

Query:   261 FRYCNHDVGHXXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
             FRYCNHDVGH          +LGWD+K+L+  G  +LK+LMGL   PEF +P    K ++
Sbjct:   250 FRYCNHDVGHAIAALSIAAADLGWDLKLLDAFGADDLKRLMGL---PEFQLPEGKGKAEL 306

Query:   321 PEIEFEHPDCVLVVFPSGATGFDVNYEKLRL--LMEEFSALDWKGKPNLLSKEHFCWDII 378
             PEIEFEHPDC+L+VFP+G +   +N + L +   + +F +L+W G PN LSKEH CWDII
Sbjct:   307 PEIEFEHPDCLLLVFPNGTSREHLNLDYLAISSALRDFPSLEWTGNPNTLSKEHLCWDII 366

Query:   379 YSTAEVVKKPLTI--RNAFSVD--PFSSS-GVCSESSYKGFTVREVVRKRRSAVDMDGVT 433
             Y TA+ V+KP  I   ++ S+D   F+SS  + S SSY   TVR+VVR RRSAVDMD VT
Sbjct:   367 YRTAKAVEKPPLIYSTSSSSIDVASFTSSRALFSHSSYNKLTVRQVVRTRRSAVDMDAVT 426

Query:   434 AIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWD-AEVHAALFIHRVKGLPKGLY 492
              ID  +FYQ+++HCLPS   + E QK QLALP+R L WD AEVH ALF+HRV GLPKGLY
Sbjct:   427 CIDMSSFYQMLMHCLPS---TGESQKEQLALPFRALPWDTAEVHLALFVHRVSGLPKGLY 483

Query:   493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGC 552
              LVRNEDHL +LK A R  F W KP+GCP +LPLY+LA GDCQ+LAKGLSCHQDIAGDGC
Sbjct:   484 LLVRNEDHLSDLKTATRPEFEWTKPDGCPDNLPLYKLAEGDCQRLAKGLSCHQDIAGDGC 543

Query:   553 FSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEV 612
             FSLGM+A FEP L  K  WMYPRLFWETGV+GQVLYLEAHA+GISATGIGC+FDDPVHEV
Sbjct:   544 FSLGMIARFEPALREKGSWMYPRLFWETGVVGQVLYLEAHAMGISATGIGCYFDDPVHEV 603

Query:   613 LGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGP 646
             LG+  S FQSLYHFTVGGPVVD+RIM+LPAYPGP
Sbjct:   604 LGINDSSFQSLYHFTVGGPVVDKRIMTLPAYPGP 637


>UNIPROTKB|Q60C87 [details] [associations]
            symbol:MCA0222 "Putative uncharacterized protein"
            species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000415 Pfam:PF00881 GO:GO:0016491 Gene3D:3.40.109.10
            SUPFAM:SSF55469 GO:GO:0055114 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000009405 RefSeq:YP_112758.1
            ProteinModelPortal:Q60C87 GeneID:3102725 KEGG:mca:MCA0222
            PATRIC:22604175 OMA:ATKHSYL ProtClustDB:CLSK931501 Uniprot:Q60C87
        Length = 529

 Score = 501 (181.4 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 118/290 (40%), Positives = 151/290 (52%)

Query:   356 FSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFS-SSGVCSESSYKGF 414
             F  L W GK N+L         +Y    + +     R +    P    +     +     
Sbjct:   253 FGNLKWAGKANVLDPHP-----MYHWPVIDEVADASRGSVQATPSPPETDYPPRADLPAV 307

Query:   415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAE 474
                 V+R+RRSA   D    + R  FY ++   L           R  A P+ V      
Sbjct:   308 AAAAVIRQRRSAQRFDRRFELVRNDFYALLDALLA----------RPCA-PWDVWDLTPA 356

Query:   475 VHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDC 534
             +H  LF+HRV GL  GLY L R+ D   +L+ A+R  F W +P  CPR LPL+ LA G C
Sbjct:   357 LHPVLFVHRVTGLAPGLYALPRSRDAETKLRAALRPDFAWTRPSDCPRHLPLFLLAEGGC 416

Query:   535 QQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAV 594
               LA+ + CHQ IA D  F+LGM+A FE  L N   W Y +L WE G+LGQ LYLEA A 
Sbjct:   417 GPLARTVCCHQAIAADSAFALGMLAEFEGIL-NAAPWRYRQLHWEAGLLGQALYLEAEAR 475

Query:   595 GISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYP 644
             G+  TGIGC+FDD  HE+LGL+G  FQSLYHFTVG P+ D RI +   YP
Sbjct:   476 GLRGTGIGCYFDDAFHELLGLSGKAFQSLYHFTVGRPLDDPRITTEAPYP 525

 Score = 360 (131.8 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 76/164 (46%), Positives = 94/164 (57%)

Query:   147 PPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDS 206
             PP+ LT+ S+  L   SLALSAWK  G   WSLR NPSSGNLHPTE Y++   ++ L D 
Sbjct:    71 PPRALTLDSVGLLLELSLALSAWKEYGPDRWSLRCNPSSGNLHPTEGYVVCQNLDGLDDG 130

Query:   207 PFVAHYAPKEHALELRAKI-PSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCN 265
               + HY  ++HALE RA+  P   D        +  L+G SSI WREAWKYGERAFRYC 
Sbjct:   131 --IYHYLSRDHALECRARATPDTAD------GPSRLLIGLSSIHWREAWKYGERAFRYCQ 182

Query:   266 HDVGHXXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEF 309
              D GH           LGW ++ +E        +L+GLD   EF
Sbjct:   183 LDTGHAIGALRYAAAALGWGLRRVEMADAGVTARLLGLDRASEF 226

 Score = 251 (93.4 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 56/137 (40%), Positives = 75/137 (54%)

Query:    69 VLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLS 128
             +  YH++TKH   +YA GP  LDW+ QP+PFR +     + L  L +R D         +
Sbjct:     9 IFAYHERTKHRLERYAAGPETLDWSAQPDPFRTFEGTDRIRLPLLADRLD---------T 59

Query:   129 NYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNL 188
             +Y   + P          PP+ LT+ S+  L   SLALSAWK  G   WSLR NPSSGNL
Sbjct:    60 SYPDLHRP-------GAVPPRALTLDSVGLLLELSLALSAWKEYGPDRWSLRCNPSSGNL 112

Query:   189 HPTEAYIIAPAIESLCD 205
             HPTE Y++   ++ L D
Sbjct:   113 HPTEGYVVCQNLDGLDD 129

 Score = 37 (18.1 bits), Expect = 8.6e-31, Sum P(2) = 8.6e-31
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   623 LYHFTVGGPVVDRRIMSLPAYPGP 646
             +YH+ V   V D    S+ A P P
Sbjct:   270 MYHWPVIDEVADASRGSVQATPSP 293


>UNIPROTKB|Q74EZ0 [details] [associations]
            symbol:GSU0819 "FMN-dependent polypeptide cyclic thioester
            oxidase, putative" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000415 Pfam:PF00881 GO:GO:0016491
            EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.40.109.10
            SUPFAM:SSF55469 GO:GO:0055114 HOGENOM:HOG000146734
            InterPro:IPR020051 TIGRFAMs:TIGR03605 RefSeq:NP_951876.1
            ProteinModelPortal:Q74EZ0 GeneID:2687231 KEGG:gsu:GSU0819
            PATRIC:22024401 OMA:HALETYL ProtClustDB:CLSK797828
            BioCyc:GSUL243231:GH27-784-MONOMER Uniprot:Q74EZ0
        Length = 252

 Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 41/170 (24%), Positives = 67/170 (39%)

Query:   162 DSLALSAWKTTGY-----STWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKE 216
             + LA   W T G          LR  PS+G  HP E Y+   ++  +   P V  Y P +
Sbjct:    86 EELAFLLWATQGVRARLNEAAVLRTVPSAGCRHPFETYLAILSVTGI--EPAVYRYLPLD 143

Query:   217 HALELRAKIPSRFDLFN------NFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGH 270
             HAL L  ++P              F  + +    +++I  R  W+Y E +++    D GH
Sbjct:   144 HALVLEREVPDLAATVTAAAHGQRFAGEAAVTFVWTAIPARTEWRYAEASYKVIALDAGH 203

Query:   271 XXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
                        +G     +         +L+G+D   EF +   P+ GK+
Sbjct:   204 VCQNLYLACEAIGAGTCAIAAYRQALADELLGVDGREEFTVYLAPV-GKV 252


>TIGR_CMR|GSU_0819 [details] [associations]
            symbol:GSU_0819 "conserved hypothetical protein"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000415 Pfam:PF00881 GO:GO:0016491 EMBL:AE017180
            GenomeReviews:AE017180_GR Gene3D:3.40.109.10 SUPFAM:SSF55469
            GO:GO:0055114 HOGENOM:HOG000146734 InterPro:IPR020051
            TIGRFAMs:TIGR03605 RefSeq:NP_951876.1 ProteinModelPortal:Q74EZ0
            GeneID:2687231 KEGG:gsu:GSU0819 PATRIC:22024401 OMA:HALETYL
            ProtClustDB:CLSK797828 BioCyc:GSUL243231:GH27-784-MONOMER
            Uniprot:Q74EZ0
        Length = 252

 Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 41/170 (24%), Positives = 67/170 (39%)

Query:   162 DSLALSAWKTTGY-----STWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKE 216
             + LA   W T G          LR  PS+G  HP E Y+   ++  +   P V  Y P +
Sbjct:    86 EELAFLLWATQGVRARLNEAAVLRTVPSAGCRHPFETYLAILSVTGI--EPAVYRYLPLD 143

Query:   217 HALELRAKIPSRFDLFN------NFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGH 270
             HAL L  ++P              F  + +    +++I  R  W+Y E +++    D GH
Sbjct:   144 HALVLEREVPDLAATVTAAAHGQRFAGEAAVTFVWTAIPARTEWRYAEASYKVIALDAGH 203

Query:   271 XXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
                        +G     +         +L+G+D   EF +   P+ GK+
Sbjct:   204 VCQNLYLACEAIGAGTCAIAAYRQALADELLGVDGREEFTVYLAPV-GKV 252


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      650       632   0.00092  120 3  11 22  0.38    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  396 KB (2191 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  51.88u 0.13s 52.01t   Elapsed:  00:00:02
  Total cpu time:  51.89u 0.13s 52.02t   Elapsed:  00:00:02
  Start:  Tue May 21 14:49:27 2013   End:  Tue May 21 14:49:29 2013

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