BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006333
         (650 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58779|Y1384_METJA Putative nitroreductase MJ1384 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ1384 PE=3 SV=1
          Length = 198

 Score = 43.9 bits (102), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 150 PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFV 209
           PLT+  +S + + +  ++  +  G+ T      PS+G  +P E Y+    +  + +   V
Sbjct: 34  PLTLRELSHILFAAYGVTDER--GFKTV-----PSAGATYPLEIYVNVRDVVGVEEG--V 84

Query: 210 AHYAPKEHALE--LRAKIPSRFDLF---NNFFPKNSFLVGFSSIFWREAWKYGERAFRYC 264
             Y P+ H++   L  ++     L      F      ++  ++ + R    YG+R FRY 
Sbjct: 85  YKYIPERHSIVRILDEEVGHELALAALKQMFIAIAPIVLIIAANYERTTRVYGDRGFRYV 144

Query: 265 NHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIP 312
           + +VGH    V + A  LG     +      E+++++ +  +P  ++P
Sbjct: 145 HMEVGHVAQNVYLMATSLGLGTVSVGAFYDNEIREILKIKEYPLLLMP 192


>sp|P42724|TFXB_RHILT Trifolitoxin-processing protein TfxB OS=Rhizobium leguminosarum bv.
           trifolii GN=tfxB PE=4 SV=1
          Length = 373

 Score = 38.9 bits (89), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 29/193 (15%)

Query: 130 YNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSL-----RVNPS 184
           + H+ APL          P  L++  I+ L    L  +A KT   + ++      +  PS
Sbjct: 180 FGHEKAPL----------PNELSLDIITLL----LNYAAAKTDTVNMYATGEHLRKAVPS 225

Query: 185 SGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEH---ALELRAKIPSRFDLFNNFFPKN-S 240
            G  HP E Y++    E       V HY  + H   A+E+ +         ++  P++ S
Sbjct: 226 GGARHPIEFYVVV-GDEIAGIEAGVYHYNVRHHRLDAIEIASTSLKALQEASSVLPRSRS 284

Query: 241 FLVGFSSI----FWREAWKYGE-RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYK 295
              GF+ I    F R  ++Y E R++R    D+GH  A   +AA  LG D      +   
Sbjct: 285 KPFGFAFIHTCRFERSMFRYREPRSYRVMQFDLGHIHANEVLAAKILGLDFSETFSVPES 344

Query: 296 ELKKLMGLDIFPE 308
            ++ ++ LD F E
Sbjct: 345 IVESVLTLDPFIE 357


>sp|O07587|AAT3_BACSU Putative aspartate aminotransferase YhdR OS=Bacillus subtilis
           (strain 168) GN=yhdR PE=3 SV=1
          Length = 393

 Score = 34.7 bits (78), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 260 AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPE----------- 308
           AF YCN  +G   A V M  A    D   ++   YKE + LM +DI  E           
Sbjct: 270 AFVYCNRTLGFVNAPVMMQRAVARMDDLRVDASAYKERRDLM-VDILKEAGFEFEMPKGG 328

Query: 309 -FVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATG 341
            FV P  PI+ ++           L++ PS   G
Sbjct: 329 FFVFPKSPIEDEVAFCVHAAQKYKLLIVPSSGFG 362


>sp|B0W377|MOCS3_CULQU Adenylyltransferase and sulfurtransferase MOCS3 OS=Culex
           quinquefasciatus GN=CPIJ001621 PE=3 SV=1
          Length = 438

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 97  NPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLT 152
           N   RY+      L+  P  +    Q    L+ YNH + P Y  LF + PPP+ +T
Sbjct: 170 NVATRYLLNDACVLLKKPLVSGSALQLEGQLTVYNHKSGPCYRCLFPNPPPPETVT 225


>sp|P09292|UL17_VZVD Virion-packaging protein 43 OS=Varicella-zoster virus (strain
           Dumas) GN=43 PE=3 SV=1
          Length = 676

 Score = 34.3 bits (77), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 173 GYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLF 232
           G S W  R+  S    H  +A I A  I +  D+P   H   ++   EL A++P   ++ 
Sbjct: 377 GSSAWGGRITGSPILYHSAQAIIDAACINARVDNPQSLHVTARQ---ELVARLPFLANVL 433

Query: 233 NNFFPKNSFLVGFSSIFWREAWK 255
           NN  P  +F  G + +F  + +K
Sbjct: 434 NNQTPLPAFKPG-AEMFLNQVFK 455


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,569,808
Number of Sequences: 539616
Number of extensions: 11726467
Number of successful extensions: 23161
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 23154
Number of HSP's gapped (non-prelim): 19
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)