Query 006333
Match_columns 650
No_of_seqs 433 out of 2435
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 21:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03605 antibiot_sagB SagB-t 100.0 2.5E-33 5.5E-38 272.6 15.8 163 152-316 1-171 (173)
2 cd02142 mcbC-like_oxidoreducta 99.9 1.8E-26 3.9E-31 224.9 16.2 166 144-317 8-179 (180)
3 TIGR03605 antibiot_sagB SagB-t 99.9 1.3E-24 2.7E-29 211.6 15.9 168 436-630 1-173 (173)
4 cd02142 mcbC-like_oxidoreducta 99.9 5.2E-24 1.1E-28 207.5 15.5 176 420-630 1-180 (180)
5 PRK10765 nitroreductase A; Pro 99.8 3.3E-20 7.1E-25 189.7 14.2 153 415-636 3-165 (240)
6 cd02149 NfsB_like_nitroreducta 99.8 4.1E-20 8.8E-25 176.8 13.8 141 415-634 1-144 (157)
7 cd02148 Nitroreductase_5 Nitro 99.8 1.3E-19 2.8E-24 178.1 15.6 152 416-634 2-170 (185)
8 PRK05365 malonic semialdehyde 99.8 1.3E-19 2.7E-24 179.7 15.0 155 413-634 6-177 (195)
9 PRK11053 dihydropteridine redu 99.8 2.4E-19 5.2E-24 180.6 15.7 160 414-635 1-198 (217)
10 cd02151 NADPH_oxidoreductase_2 99.8 4.4E-19 9.5E-24 170.5 15.5 142 417-635 2-154 (162)
11 cd02138 Nitroreductase_2 Nitro 99.8 6.5E-19 1.4E-23 172.6 16.1 153 414-635 3-158 (181)
12 cd02146 NfsA_FRP This family c 99.8 2.5E-19 5.3E-24 182.1 13.4 150 417-635 2-166 (229)
13 cd02137 Nitroreductase_1 Nitro 99.8 5.5E-19 1.2E-23 167.3 12.7 132 418-634 2-135 (148)
14 cd02139 Nitroreductase_3 Nitro 99.8 6.9E-19 1.5E-23 169.3 13.3 148 417-635 2-151 (164)
15 cd02150 NADPH_oxidoreductase_1 99.8 1E-18 2.2E-23 168.6 13.7 143 418-635 2-150 (166)
16 cd03370 NADH_oxidase NADPH_oxi 99.8 1.4E-18 2.9E-23 166.2 14.0 143 417-635 2-146 (156)
17 cd02144 iodotyrosine_dehalogen 99.8 1.9E-18 4.1E-23 170.3 15.1 176 417-635 2-180 (193)
18 PRK10828 putative oxidoreducta 99.8 2.8E-18 6E-23 168.5 15.3 163 414-636 1-168 (183)
19 PF00881 Nitroreductase: Nitro 99.8 2.2E-19 4.8E-24 171.0 7.0 161 420-630 1-165 (165)
20 cd02145 BluB Subfamily of the 99.8 3.9E-18 8.4E-23 169.1 15.9 174 418-639 2-179 (196)
21 TIGR03553 F420_FbiB_CTERM F420 99.8 5.8E-18 1.3E-22 167.4 15.3 171 418-636 1-180 (194)
22 TIGR02476 BluB cob(II)yrinic a 99.8 6.5E-18 1.4E-22 168.8 15.6 177 414-638 7-187 (205)
23 cd02136 Nitroreductase Nitrore 99.7 2.4E-17 5.2E-22 160.6 15.4 157 417-635 2-162 (178)
24 cd02135 Arsenite_oxidase Nitro 99.7 4.1E-17 8.8E-22 155.9 15.0 155 418-630 2-160 (160)
25 cd02143 NADH_nitroreductase Ni 99.7 1.4E-16 3E-21 150.8 11.5 131 419-635 1-138 (147)
26 PRK13294 F420-0--gamma-glutamy 99.7 3.3E-16 7.2E-21 172.6 15.8 172 416-635 253-433 (448)
27 cd02140 Nitroreductase_4 Nitro 99.7 1.9E-16 4.2E-21 156.5 12.5 167 417-635 2-179 (192)
28 PF00881 Nitroreductase: Nitro 99.7 1.7E-17 3.6E-22 158.0 0.6 149 144-316 8-163 (165)
29 cd02062 Nitro_FMN_reductase Pr 99.6 1.4E-15 3.1E-20 138.3 12.0 118 420-630 1-122 (122)
30 COG0778 NfnB Nitroreductase [E 99.6 2.4E-14 5.2E-19 141.0 13.4 155 414-636 3-189 (207)
31 cd02149 NfsB_like_nitroreducta 99.6 2.4E-14 5.2E-19 137.0 12.2 125 144-316 13-138 (157)
32 cd02139 Nitroreductase_3 Nitro 99.6 1.3E-14 2.9E-19 139.6 10.4 133 144-316 12-144 (164)
33 PRK10765 nitroreductase A; Pro 99.5 7.5E-14 1.6E-18 142.9 12.3 135 144-316 15-157 (240)
34 cd02151 NADPH_oxidoreductase_2 99.5 1E-13 2.2E-18 133.3 12.3 127 144-316 12-147 (162)
35 cd02138 Nitroreductase_2 Nitro 99.5 6.7E-14 1.5E-18 137.1 10.2 134 145-316 17-151 (181)
36 cd02150 NADPH_oxidoreductase_1 99.5 1.2E-13 2.6E-18 133.3 11.4 129 144-316 11-143 (166)
37 cd02148 Nitroreductase_5 Nitro 99.5 9.7E-14 2.1E-18 136.5 10.1 137 144-316 13-164 (185)
38 cd02137 Nitroreductase_1 Nitro 99.5 1.3E-13 2.9E-18 130.4 10.6 118 144-316 11-129 (148)
39 cd02146 NfsA_FRP This family c 99.5 2.9E-13 6.3E-18 137.7 12.8 135 144-316 12-159 (229)
40 cd03370 NADH_oxidase NADPH_oxi 99.5 4.1E-13 9E-18 128.3 12.2 128 144-316 12-139 (156)
41 PRK05365 malonic semialdehyde 99.5 3.4E-13 7.4E-18 133.7 11.0 136 145-316 21-171 (195)
42 cd02062 Nitro_FMN_reductase Pr 99.4 7.8E-13 1.7E-17 120.2 11.6 111 144-316 8-120 (122)
43 cd02135 Arsenite_oxidase Nitro 99.4 8.6E-13 1.9E-17 126.0 11.7 145 144-316 11-158 (160)
44 cd02144 iodotyrosine_dehalogen 99.4 5.2E-13 1.1E-17 131.6 9.9 151 144-316 12-173 (193)
45 cd02136 Nitroreductase Nitrore 99.4 4.2E-13 9.2E-18 130.7 8.0 141 144-316 12-155 (178)
46 cd02145 BluB Subfamily of the 99.4 4.6E-13 1E-17 132.8 7.1 151 144-316 11-168 (196)
47 TIGR02476 BluB cob(II)yrinic a 99.4 8E-13 1.7E-17 132.1 7.1 151 145-316 21-177 (205)
48 PRK10828 putative oxidoreducta 99.4 4.6E-12 1E-16 124.5 11.6 139 145-316 15-160 (183)
49 PRK11053 dihydropteridine redu 99.4 4.8E-12 1E-16 127.6 12.0 140 144-316 14-191 (217)
50 cd02143 NADH_nitroreductase Ni 99.3 9.9E-12 2.1E-16 117.7 11.5 118 144-316 9-131 (147)
51 TIGR03553 F420_FbiB_CTERM F420 99.3 7.1E-12 1.5E-16 124.0 10.3 148 144-316 10-172 (194)
52 cd02140 Nitroreductase_4 Nitro 99.2 7.5E-11 1.6E-15 116.7 9.6 146 145-316 13-172 (192)
53 PRK13294 F420-0--gamma-glutamy 99.1 2.2E-10 4.9E-15 126.7 12.2 148 145-316 265-426 (448)
54 COG0778 NfnB Nitroreductase [E 99.0 1.7E-09 3.8E-14 106.3 10.6 137 145-316 17-181 (207)
55 PRK07877 hypothetical protein; 98.8 5.2E-07 1.1E-11 105.2 21.6 58 575-633 624-704 (722)
56 PRK14851 hypothetical protein; 98.4 4.3E-05 9.4E-10 89.1 22.3 57 575-631 578-660 (679)
57 PF14512 TM1586_NiRdase: Putat 97.6 0.00021 4.5E-09 71.1 8.2 44 577-633 65-108 (206)
58 PRK14852 hypothetical protein; 97.4 0.0073 1.6E-07 72.4 18.5 55 576-631 890-969 (989)
59 PRK14851 hypothetical protein; 96.6 0.0093 2E-07 69.9 10.5 45 414-468 292-349 (679)
60 COG3560 FMR2 Predicted oxidore 95.2 0.21 4.6E-06 48.1 10.9 165 414-635 4-184 (200)
61 PRK07877 hypothetical protein; 95.2 0.099 2.2E-06 61.8 10.5 49 573-632 421-469 (722)
62 PRK14852 hypothetical protein; 88.4 1.5 3.3E-05 53.2 8.6 43 558-601 647-689 (989)
63 PF14512 TM1586_NiRdase: Putat 83.5 1.3 2.9E-05 44.3 4.1 26 265-290 65-90 (206)
64 KOG3936 Nitroreductases [Energ 83.3 0.96 2.1E-05 38.3 2.5 34 413-447 65-98 (100)
65 PF04298 Zn_peptidase_2: Putat 29.1 1.1E+02 0.0025 31.1 5.6 46 146-221 32-77 (222)
No 1
>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.
Probab=100.00 E-value=2.5e-33 Score=272.61 Aligned_cols=163 Identities=29% Similarity=0.425 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHhcccccccccCCCccc-ccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCC--ch
Q 006333 152 TVSSISQLFYDSLALSAWKTTGYSTWS-LRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIP--SR 228 (650)
Q Consensus 152 ~~~~Ls~lL~~s~g~~~~~~~g~~~~~-~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~--~~ 228 (650)
++++|++|||.++|++.++...++.+. +|.+||+||+||+|+|+++++|+||++ |+|||+|.+|+|+++...+ ..
T Consensus 1 ~~~~ls~lL~~~~g~~~~~~~~~~~~~~~r~~pSaG~l~p~~~y~~~~~v~gl~~--G~Y~Y~p~~h~L~~~~~~~~~~~ 78 (173)
T TIGR03605 1 TLEELSQLLWYSAGVKEIKLPYNDEILFRRSYPSGGGLYPLEIYLYVKNIEGLPD--GIYHYDPEEHRLILIRAGEENVD 78 (173)
T ss_pred CHHHHHHHHHHhcCCcccccCCCCccceeeecCCCcccCcEEEEEEEeEeCCCCC--eeEEEcCCCCEEEEeeCCccCHH
Confidence 478999999999999988765555553 599999999999999999999999995 9999999999999988763 22
Q ss_pred hc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 229 FD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 229 ~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
.. +. ++++.+|+++|+++++++|..|||++|+||++++|+|+++||++++|+++|+++|++++|+++.|+++|||
T Consensus 79 ~~l~~~~~~~~~~~~A~~~iv~~~~~~~~~~~y~~~~~~~~~~daG~~~qnl~LaA~~~Glgs~~i~~f~~~~v~~~L~l 158 (173)
T TIGR03605 79 AFLVNALLNTENANTPPIIIFIVARFWKNFWKYGNRGYRLALLDSGIIIQNFYLVATALGLGSCAIGGFDDDYIAELLGL 158 (173)
T ss_pred HHHHHHHhCccccccCCEEEEEEEEecccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEccccHHHHHHHhCc
Confidence 21 12 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
|+..|.++++++|
T Consensus 159 ~~~~~~~~~~~~v 171 (173)
T TIGR03605 159 DGIEESVVGVFPV 171 (173)
T ss_pred CCccceeEEEEec
Confidence 9988889888887
No 2
>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.
Probab=99.94 E-value=1.8e-26 Score=224.86 Aligned_cols=166 Identities=31% Similarity=0.433 Sum_probs=144.2
Q ss_pred CCCCCCCCC-HHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPPQPLT-VSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~~pl~-~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+..++++ +..++.+++...+.. .....+|.+||+||+||+++|+++.+|+||++ |+|||+|.+|+|+++
T Consensus 8 r~f~~~~~~~~~~~~~~l~~~~~~~------~~~~~~r~~pS~g~l~~~~~y~~~~~v~gl~~--G~Y~y~~~~~~L~~~ 79 (180)
T cd02142 8 RRFLDEPLPSLLGLLLLLSRVLGLA------SGLLPLRTYPSAGALYPIEVYLVVGRVEGLAA--GLYHYDPLEHSLELL 79 (180)
T ss_pred cccCCCCCchHHHHHHHHHHhcccc------CCCcccccCCCCCCCcceEEEEEEcccCCCCC--ccEEEcCCCCEEEEE
Confidence 356788888 889999998754433 23456899999999999999999999999995 999999999999998
Q ss_pred ccCCchhc-----cccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHH
Q 006333 223 AKIPSRFD-----LFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKEL 297 (650)
Q Consensus 223 ~~~~~~~~-----~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l 297 (650)
...+.... ..+.++.+++++|+++++.++..||||+++||++++|+|+++|+++++|+++|+++|++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~y~~~~~~~~~~d~G~~~q~l~l~a~~~glg~~~~~~~~~~~v 159 (180)
T cd02142 80 RAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRYALMEAGHLGQNLYLAATALGLGTCAIGAFDDDAL 159 (180)
T ss_pred ecCcHHHHHHHHHcCChhhhCCCEEEEEEEeecHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEcHHHH
Confidence 76544221 1245788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcceeeecccc
Q 006333 298 KKLMGLDIFPEFVIPSKPIK 317 (650)
Q Consensus 298 ~~lLgLd~~~E~v~~~~~i~ 317 (650)
+++|||++..|.++++++++
T Consensus 160 ~~~l~l~~~~~~~~~~~~vG 179 (180)
T cd02142 160 AELLGLDGLEEQPLYAFTVG 179 (180)
T ss_pred HHHhCCCCcccceEEEEecc
Confidence 99999998667788888773
No 3
>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.
Probab=99.92 E-value=1.3e-24 Score=211.56 Aligned_cols=168 Identities=23% Similarity=0.312 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHhccCCCcchhhhhcccCCCcccccc---cceEEEEEEEecccCCCCeeeeecCCcchhhHHHHHhhccc
Q 006333 436 DRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSW---DAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGF 512 (650)
Q Consensus 436 ~~e~l~~iL~~a~Ps~~~~~~~~g~~~~~P~~~~~~---~~~v~l~v~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~ 512 (650)
+.++|++||+.+. +++...........-.|..|+ ...+++|++|++|+||++|+|+|+|..+.
T Consensus 1 ~~~~ls~lL~~~~--g~~~~~~~~~~~~~~~r~~pSaG~l~p~~~y~~~~~v~gl~~G~Y~Y~p~~h~------------ 66 (173)
T TIGR03605 1 TLEELSQLLWYSA--GVKEIKLPYNDEILFRRSYPSGGGLYPLEIYLYVKNIEGLPDGIYHYDPEEHR------------ 66 (173)
T ss_pred CHHHHHHHHHHhc--CCcccccCCCCccceeeecCCCcccCcEEEEEEEeEeCCCCCeeEEEcCCCCE------------
Confidence 4689999999887 322111000000000133332 35799999999999999999999998765
Q ss_pred ccCCCCCCCCCCcccccccc--cHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHH
Q 006333 513 VWEKPEGCPRDLPLYELARG--DCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLE 590 (650)
Q Consensus 513 ~w~~~~~~p~~l~l~~l~~g--d~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~La 590 (650)
|..+..+ |++..+...+.+|.++.+|+++|++++++++...+||+++||+.++|+|+++|||+|+
T Consensus 67 -------------L~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~iv~~~~~~~~~~~y~~~~~~~~~~daG~~~qnl~La 133 (173)
T TIGR03605 67 -------------LILIRAGEENVDAFLVNALLNTENANTPPIIIFIVARFWKNFWKYGNRGYRLALLDSGIIIQNFYLV 133 (173)
T ss_pred -------------EEEeeCCccCHHHHHHHHHhCccccccCCEEEEEEEEecccHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566 7888788778889999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccc
Q 006333 591 AHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 591 A~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~ 630 (650)
|+++|+++|+||+|++++|+++|||++.++.+++.++||+
T Consensus 134 A~~~Glgs~~i~~f~~~~v~~~L~l~~~~~~~~~~~~vG~ 173 (173)
T TIGR03605 134 ATALGLGSCAIGGFDDDYIAELLGLDGIEESVVGVFPVGR 173 (173)
T ss_pred HHHcCCCeEEEccccHHHHHHHhCcCCccceeEEEEecCC
Confidence 9999999999999999999999999986778999999995
No 4
>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.
Probab=99.91 E-value=5.2e-24 Score=207.46 Aligned_cols=176 Identities=34% Similarity=0.434 Sum_probs=148.6
Q ss_pred HHhcCCCCCCCCCCCCC-HHHHHHHHHHhccCCCcchhhhhcccCCCcccccc---cceEEEEEEEecccCCCCeeeeec
Q 006333 420 VRKRRSAVDMDGVTAID-RETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSW---DAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 420 I~~RRS~R~F~~~~~I~-~e~l~~iL~~a~Ps~~~~~~~~g~~~~~P~~~~~~---~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
|.+|||+|.|.+ .+|+ ...+..++....+... ...+.+..|. ...+.+|+++++|+||++|+|+|+
T Consensus 1 ~~~R~S~r~f~~-~~~~~~~~~~~~l~~~~~~~~---------~~~~~r~~pS~g~l~~~~~y~~~~~v~gl~~G~Y~y~ 70 (180)
T cd02142 1 LLRRRSTRRFLD-EPLPSLLGLLLLLSRVLGLAS---------GLLPLRTYPSAGALYPIEVYLVVGRVEGLAAGLYHYD 70 (180)
T ss_pred CCccccccccCC-CCCchHHHHHHHHHHhccccC---------CCcccccCCCCCCCcceEEEEEEcccCCCCCccEEEc
Confidence 358999999998 7899 8888888877652211 1122333332 367889999999999999999999
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR 575 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~ 575 (650)
+..+. |..+..++.++.....+.+|.++.+|+++++++++..+...+||.++||.
T Consensus 71 ~~~~~-------------------------L~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~y~~~~~~~ 125 (180)
T cd02142 71 PLEHS-------------------------LELLRAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRY 125 (180)
T ss_pred CCCCE-------------------------EEEEecCcHHHHHHHHHcCChhhhCCCEEEEEEEeecHHHHhHHHHHHHH
Confidence 87764 45566677777777788899999999999999999999889999999999
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccc
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~ 630 (650)
.++|+|+++|+|+|+|+++|+++|++|+|++++++++|++++.++.+++.++||+
T Consensus 126 ~~~d~G~~~q~l~l~a~~~glg~~~~~~~~~~~v~~~l~l~~~~~~~~~~~~vG~ 180 (180)
T cd02142 126 ALMEAGHLGQNLYLAATALGLGTCAIGAFDDDALAELLGLDGLEEQPLYAFTVGR 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcHHHHHHHhCCCCcccceEEEEeccC
Confidence 9999999999999999999999999999999999999999974568999999995
No 5
>PRK10765 nitroreductase A; Provisional
Probab=99.83 E-value=3.3e-20 Score=189.73 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=118.6
Q ss_pred cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333 415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY 492 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY 492 (650)
++.++|++|||+|+|++ ++|+.++|.+||+++. ||+. +.|||+ +++|.
T Consensus 3 ~~~~~i~~RRSiR~F~~-~~v~~e~l~~ileaA~~APSs~---------n~Q~~~----------~ivV~---------- 52 (240)
T PRK10765 3 PTIELILSHRSIRHFTD-EPISEAQREAIINAARAASSSS---------FLQCSS----------IIRIT---------- 52 (240)
T ss_pred HHHHHHHHcCccccCCC-CCCCHHHHHHHHHHHHhCCCcc---------cCCceE----------EEEEC----------
Confidence 57789999999999998 7999999999999997 8865 568998 34443
Q ss_pred eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccccc
Q 006333 493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWM 572 (650)
Q Consensus 493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~ 572 (650)
+.+. ++.+..++.+|.++.+++..+++++|+.+.....+...
T Consensus 53 ----d~e~----------------------------------~~~l~e~~~~q~~v~~a~~~lv~~~d~~r~~~~~~~~~ 94 (240)
T PRK10765 53 ----DKAL----------------------------------REALVELTGGQKYVAQAAEFWVFCADFNRHLQICPDAQ 94 (240)
T ss_pred ----CHHH----------------------------------HHHHHHHhCCChHHHhchheEEEEEcHHHHHhhCcccc
Confidence 2221 22233344568888899999999999766432222111
Q ss_pred ------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 573 ------YPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 573 ------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
+.....|+|+++|||+|+|+++|||+||||++ +.++|.++||||+ ++.+++.++||+|.++..
T Consensus 95 ~~~~~~~~~~~~Dagiaaqnl~laA~slGLGs~~ig~~~~~~~~v~~~L~LP~-~~~~v~~l~iGyp~~~~~ 165 (240)
T PRK10765 95 LGLAEQLLIGAVDTAIMAQNALLAAESLGLGGVYIGGLRNNIEAVTELLKLPQ-HVLPLFGLCLGWPAQNPD 165 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeCccccCHHHHHHHhCcCC-CceeEEEEEEeccCCCCC
Confidence 12335799999999999999999999999998 4578999999997 578999999999987653
No 6
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=99.83 E-value=4.1e-20 Score=176.84 Aligned_cols=141 Identities=20% Similarity=0.206 Sum_probs=111.7
Q ss_pred cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333 415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY 492 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY 492 (650)
++.++|++|||+|+|+++.+|+.++|.+||+++. ||+. |.|||++ ++|.
T Consensus 1 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~---------- 51 (157)
T cd02149 1 NILELLNFRYATKAFDPSKKISDEDLEEILEALRLSPSSF---------GLQPWKF----------LVVE---------- 51 (157)
T ss_pred ChHHHHHhCeehhccCCCCCCCHHHHHHHHHHHHHCcCcC---------CccCeEE----------EEeC----------
Confidence 3568999999999999723999999999999986 8865 4689983 4443
Q ss_pred eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhh-cccccccccCceEEEEeeecchhhhccccc
Q 006333 493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGL-SCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l-~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+++..+.|. .. +.+|.++.+|+..++++++.
T Consensus 52 ----~~~~~~~l~----------------------------------~~~~~~~~~~~~ap~~i~~~~~~---------- 83 (157)
T cd02149 52 ----NEELKARLA----------------------------------PAAWFNQPQVTDASHLVVFLART---------- 83 (157)
T ss_pred ----CHHHHHHHh----------------------------------hhhhcCCcccCCCCEEEEEEecH----------
Confidence 222211121 11 33567778899988888874
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
.....++|+++|+|+|+|+++|||+||||+|++++++++|+|++.++.+++.++||+|.++
T Consensus 84 --~~~~~d~~~a~~~l~LaA~~lGlgs~~i~~~~~~~v~~~l~l~~~~~~~~~~i~iGy~~~~ 144 (157)
T cd02149 84 --DWAAKQAYIALGNMLLAAASLGIDSCPIEGFDPAKLDEILGLDEKGYGSSVMVALGYRSEE 144 (157)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCcCcccCcCHHHHHHHhCCCcccCceEEEEEeeccCCc
Confidence 1234789999999999999999999999999999999999999755679999999999886
No 7
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.82 E-value=1.3e-19 Score=178.14 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=114.2
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333 416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF 493 (650)
Q Consensus 416 l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~ 493 (650)
+.++|++|||+|+|++ ++|+.|+|.+||+++. ||+. |.|||++ ++|.
T Consensus 2 ~~~~~~~RrSvR~f~~-~~I~~e~l~~ileaa~~APS~~---------N~Qpw~f----------vvV~----------- 50 (185)
T cd02148 2 LDQLFTEARTANGFTD-EPVSDEQLRAIYDLVKWGPTAA---------NSQPARF----------VFVR----------- 50 (185)
T ss_pred hHHHHhhCcccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE-----------
Confidence 5689999999999998 7999999999999997 9875 5799993 4543
Q ss_pred ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh--c----
Q 006333 494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS--N---- 567 (650)
Q Consensus 494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~--~---- 567 (650)
+.+.+++|.+.. ...+|..+.+|+++|+++++.+.... +
T Consensus 51 ---~~e~~~~l~~~~--------------------------------~~~~~~~~~~ap~~ivv~~~~~~~~~~~~~~~~ 95 (185)
T cd02148 51 ---SAEAKERLVPAL--------------------------------SEGNRAKTLAAPVTAILAYDTEFHEQLPRLFPH 95 (185)
T ss_pred ---CHHHHHHHHHHH--------------------------------HHhhHHHHhcCCEEEEEEecccHHHhHHHhCcc
Confidence 233333333210 01245566688888888886542110 0
Q ss_pred -------cccc--cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 568 -------KNVW--MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 568 -------yg~~--~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
|... ..-.+..++|+++|+|+|+|+++|||+||||||++++++++||+++ ++.++..++||||.++
T Consensus 96 ~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~lGlgs~~~~g~d~~~~~~~L~lp~-~~~~v~~iavGy~~~~ 170 (185)
T cd02148 96 RDARSWFFGSPALAEETAFRNSSLQGGYFILAARALGLDAGPMSGFDAAAVDAEFFADT-RWRSNFVVNIGYGDPD 170 (185)
T ss_pred hhhhhhhhcChHHHHHHHHHhHHHHHHHHHHHHHHcCCCcCCCcccCHHHHHHHhCCCC-CeEEEEEEEcCCCCCc
Confidence 0000 0123567999999999999999999999999999999999999996 6789999999999765
No 8
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=99.82 E-value=1.3e-19 Score=179.73 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=117.3
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
...+.++|++|||+|+|++ ++|+.|+|.+||+++. ||++ |.|||++ ++|.
T Consensus 6 ~~~~~~~i~~RrSvR~f~~-~~I~~e~l~~ileaa~~APS~~---------N~QPw~f----------vvv~-------- 57 (195)
T PRK05365 6 DAALDQLFTEARTHNGWLD-EPVSDEQLRELYDLVKWGPTSA---------NCSPARF----------VFVR-------- 57 (195)
T ss_pred HHHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEe--------
Confidence 3568899999999999997 7999999999999997 9976 5799993 4543
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh---hc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL---SN 567 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~---~~ 567 (650)
+++.+++|...+. ..+|....+|+++++++++.+... ..
T Consensus 58 ------~~e~~~~l~~~~~--------------------------------~~~~~~~~~Ap~~i~v~~~~~~~~~~~~~ 99 (195)
T PRK05365 58 ------SAEAKERLRPALS--------------------------------EGNLAKTLAAPVTAIVAYDTEFHEHLPKL 99 (195)
T ss_pred ------CHHHHHHHHHHHH--------------------------------hcCcchhcCCCEEEEEeeCccHhHhHHHh
Confidence 3333333332110 124555678888888888754211 00
Q ss_pred cc----------cc--cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 568 KN----------VW--MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 568 yg----------~~--~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
++ +. ....+..++|+++++|+|+|+++|||+|||++|+.+.|+++|||++ ++.++.+++||||.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~~Glgs~~~~g~~~~~v~~~l~ip~-~~~~v~~ialGy~~~~ 177 (195)
T PRK05365 100 FPHADARSWFAGNPALAEETAFRNSSLQGAYLILAARALGLDAGPMSGFDAAAVDAEFFAGT-TWKSNFLVNIGYGDPA 177 (195)
T ss_pred cchhHHHHHHcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCCccCCccccCHHHHHHHhCCCC-CeeEEEEEEeCCCCCC
Confidence 00 00 1123567999999999999999999999999999999999999997 6899999999999865
No 9
>PRK11053 dihydropteridine reductase; Provisional
Probab=99.81 E-value=2.4e-19 Score=180.64 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=118.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++..+|+.++|.+||+++. ||+. |.|||+ +++|.
T Consensus 1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~---------N~Qpw~----------fvvV~--------- 52 (217)
T PRK11053 1 MDIVSVAKKRYTTKAFDPSKKLPAEQIEQIKTLLRFSPSSV---------NSQPWH----------FIVAS--------- 52 (217)
T ss_pred CcHHHHHHhceeeeccCCCCCCCHHHHHHHHHHHHhCCCcC---------CCcCeE----------EEEec---------
Confidence 46789999999999998536899999999999997 9875 579999 35543
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------ 565 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------ 565 (650)
+++.++.|++++. ...+++|..+.+|+.+++++++.+..-
T Consensus 53 -----~~e~~~~l~~~~~-----------------------------~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~ 98 (217)
T PRK11053 53 -----TEEGKARIAKAAA-----------------------------GNYAFNERKILDASHVVVFCAKTDMDDAYLELV 98 (217)
T ss_pred -----CHHHHHHHHHHHh-----------------------------hhccccchhhcCCCEEEEEEecCCCCHHHHHHH
Confidence 3344444544221 112346767778888888887642100
Q ss_pred -h----c------------------c------cccc-chHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC
Q 006333 566 -S----N------------------K------NVWM-YPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL 615 (650)
Q Consensus 566 -~----~------------------y------g~~~-Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL 615 (650)
. . | +... ..++..++|+++|+|+|+|+++|||+|||+||+.+.|++.|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~lmLaA~~~Glgs~~i~g~~~~~v~~~l~i 178 (217)
T PRK11053 99 LEQEDADGRFATEEAKAAQDKGRRFFADMHRKELKDLQHWMEKQVYLALGNLLLGAAALGIDATPIEGFDAAILDAEFGL 178 (217)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCcCHHHHHHHhCC
Confidence 0 0 0 0000 0123457899999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEccccCCcC
Q 006333 616 TGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 616 ~~~~~~~ly~~avG~p~~d~ 635 (650)
+++++.+++.++|||+.++.
T Consensus 179 p~~~~~~~~~i~lGy~~~~~ 198 (217)
T PRK11053 179 REKGLTSSVVVPLGYHSEED 198 (217)
T ss_pred CCcCcceEEEEEeeccCccc
Confidence 96568899999999998754
No 10
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.81 E-value=4.4e-19 Score=170.52 Aligned_cols=142 Identities=17% Similarity=0.302 Sum_probs=109.1
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 ~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPs~~---------n~Qp~~f----------~vv~------------ 49 (162)
T cd02151 2 IELLKKRRSIRKFTD-EPVEKEKVDALLKAALRAPSSR---------NRRPWEF----------IVVT------------ 49 (162)
T ss_pred hHHHHhhchhhcCCC-CCCCHHHHHHHHHHHHhCcCCC---------CCCCeEE----------EEEC------------
Confidence 478999999999998 7999999999999987 8875 5699983 4543
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP 574 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr 574 (650)
+.+.++.|... ...+|.++.+|++.|+++++.+. ..
T Consensus 50 --~~~~~~~l~~~---------------------------------~~~~~~~~~~Ap~~i~~~~~~~~---------~~ 85 (162)
T cd02151 50 --DREKLQALSQA---------------------------------KEHGSRFLAGAALAIVVVADPRK---------SD 85 (162)
T ss_pred --CHHHHHHHHHh---------------------------------hhhhhhhHhcCCEEEEEEecCCC---------Cc
Confidence 22222222210 01134567788998988888541 11
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc---------hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF---------DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~---------dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
....|+|+++|+|+|+|+++|||+||||+|. +++++++|||++ ++.+++.++||+|.++.
T Consensus 86 ~~~~d~g~a~~nl~L~A~~lGlgtc~i~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~iG~p~~~~ 154 (162)
T cd02151 86 VWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAEEYVRRLLNIPE-HLRVLCIIAIGYPAEER 154 (162)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCeeEecccccccccchhhHHHHHHHhCcCC-CceEEEEEEEeCCCCCC
Confidence 2357999999999999999999999998653 578999999997 57999999999998755
No 11
>cd02138 Nitroreductase_2 Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.80 E-value=6.5e-19 Score=172.58 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=118.3
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
.++.++|++|||+|.|+. ++|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 3 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~~a~~APs~~---------n~qpw~f----------~vv~~-------- 54 (181)
T cd02138 3 YPIDPLILNRWSPRAFDG-EPVPREDLLSLLEAARWAPSAY---------NDQPWRF----------VYARR-------- 54 (181)
T ss_pred CCHHHHHHHhcCcccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEeCC--------
Confidence 578899999999999998 7999999999999997 8865 5689983 45431
Q ss_pred eeecCCc-chhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333 492 YFLVRNE-DHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV 570 (650)
Q Consensus 492 Y~y~~~~-~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~ 570 (650)
. +.++.+...+ ...+|.+..+|+..|+++++...... ..
T Consensus 55 ------~~~~~~~~~~~~--------------------------------~~~~~~~~~~Ap~~iiv~~~~~~~~~--~~ 94 (181)
T cd02138 55 ------GTEAWEKFLSLL--------------------------------VEGNQGWAKNAPALIAVLSKTTFDKN--EG 94 (181)
T ss_pred ------cHHHHHHHHHHH--------------------------------hhhchhHHhCCCEEEEEEEccccccc--CC
Confidence 2 1111111100 01256777889999999888643221 12
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
...+..++++|+++|+|+|+|+++|||+||||+|+.+.++++||+++ ++.+++.++||+|.++.
T Consensus 95 ~~~~~~~~d~g~a~~nl~Laa~~lGlgt~~~~~~~~~~l~~~l~l~~-~~~~~~~laiG~~~~~~ 158 (181)
T cd02138 95 KPNRTHSFDTGAAWGNLALQATAMGLAAHQMGGFDADKAREELNIPE-DYEVEAAIAIGYLGDRA 158 (181)
T ss_pred CccchhhhhHHHHHHHHHHHHHHcCcccceecCcCHHHHHHHhCCCC-CceEEEEEEeeccCccc
Confidence 23346788999999999999999999999999999999999999997 57899999999998765
No 12
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.
Probab=99.80 E-value=2.5e-19 Score=182.13 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=114.2
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ .+|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 ~~~i~~RRSvR~f~~-~~V~~e~l~~ileaa~~APS~~---------N~Qpw~f----------vVv~------------ 49 (229)
T cd02146 2 IETLLNHRSIRKFKD-EPIPDETLETLIAAAQSAPTSS---------NLQAYSV----------IVVT------------ 49 (229)
T ss_pred hHHHhhcceecCCCC-CCCCHHHHHHHHHHHHHcCCcc---------cCCceEE----------EEEc------------
Confidence 468999999999998 7999999999999997 8875 4689983 4443
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc-----
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN----- 569 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg----- 569 (650)
+.+.++. +..++++|.++.++++.++++++..+....+.
T Consensus 50 --~~~~~~~----------------------------------l~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~ 93 (229)
T cd02146 50 --DPELKAK----------------------------------LAELAGGQPYVAQAPVFLVFCADFHRLAKIAEKHGGA 93 (229)
T ss_pred --CHHHHHH----------------------------------HHHhhcCCchHHhCCEEEEEEeehHHHHHHHHHcCCc
Confidence 2222122 22223467777888998888888654322111
Q ss_pred cc------cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 570 VW------MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 570 ~~------~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.. .+.....++|+++|+|+|+|+++|||+||||+|. .++|+++|||++ ++.+++.++||+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgtc~ig~~~~~~~~v~~~L~lp~-~~~~~~~ialGyp~~~~ 166 (229)
T cd02146 94 EAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIGGIRNDPEAVIELLNLPE-YVFPVFGLAVGYPDQEP 166 (229)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccCHHHHHHHhCCCC-CceEEEEEEeeccCCCC
Confidence 01 1234678999999999999999999999999984 368999999997 67899999999998764
No 13
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.79 E-value=5.5e-19 Score=167.32 Aligned_cols=132 Identities=21% Similarity=0.354 Sum_probs=106.5
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
++|++|||+|+|+++.+|+.++|.+||+++. ||++ +.|||++ +++.
T Consensus 2 ~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vi~------------- 49 (148)
T cd02137 2 DVIESRRSVRNFDPDAKIPREELKEILELATLAPSSF---------NLQPWRF----------VVVR------------- 49 (148)
T ss_pred cHHhhCccccccCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEC-------------
Confidence 5799999999999823999999999999986 8865 4689983 3332
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR 575 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~ 575 (650)
+++.++.|. ..+.+|..+.+|++.++++++.
T Consensus 50 -~~~~~~~l~----------------------------------~~~~~~~~~~~ap~~i~~~~~~-------------- 80 (148)
T cd02137 50 -DPEKKAKLA----------------------------------EAAMNQPQVTTASAVILVLGDL-------------- 80 (148)
T ss_pred -CHHHHHHHH----------------------------------HHHcCCCccCCCCEEEEEEeCC--------------
Confidence 222222221 1223566778899988888774
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
|+|+++|+|+|+|+++|||+||||+|.++.|+++||+++ ++.+++.++||||.++
T Consensus 81 ---d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~i~~~l~l~~-~~~~~~~i~iGy~~~~ 135 (148)
T cd02137 81 ---NAGLAAMNLMLAARAYGYDTCPMGGFDAEKVAELLNLPA-RYVPVMLIAIGKAAEE 135 (148)
T ss_pred ---hhHHHHHHHHHHHHHcCCCcCcCcCcCHHHHHHHhCcCC-CceeEEEEEecccCCC
Confidence 999999999999999999999999999999999999997 5789999999999876
No 14
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.79 E-value=6.9e-19 Score=169.34 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=115.7
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~~i~~RrSvR~f~~-~~v~~e~l~~ll~aa~~aPs~~---------n~qp~~~----------~vv~------------ 49 (164)
T cd02139 2 LDLIKKRRSVRKYKD-DPVEEEKLERILEAARLAPSAK---------NLQPWRF----------IVVE------------ 49 (164)
T ss_pred hHHhhhceeeeccCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEe------------
Confidence 478999999999998 7999999999999987 8865 4689983 4432
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP 574 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr 574 (650)
+.+..++|.. . ++|.++.++++.++++++..... ....++++
T Consensus 50 --~~~~~~~l~~----------------------------------~-~~~~~~~~ap~~ii~~~~~~~~~-~~~~~~~~ 91 (164)
T cd02139 50 --SEEGLKKLAA----------------------------------A-YARKWLQTAPVVIVVCGDKNEAW-VRKIDGKN 91 (164)
T ss_pred --CHHHHHHHHH----------------------------------H-hccchhhcCCeEEEEEEcchhhc-ccccccCc
Confidence 1222111111 0 16778889999998888764322 11223455
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
....|+|+++|+|+|+|+++|+|+|||++|+++.++++|||++ ++.+++.++||++.++.
T Consensus 92 ~~~~d~g~a~~~l~l~A~~~Glgt~~~~~~~~~~~~~~l~l~~-~~~~~~~i~iG~~~~~~ 151 (164)
T cd02139 92 SYETDLAIAMEHMMLAAAELGLGTCWIGAFDEDEIKEALDIPE-NEEVVAILPLGYPAEDP 151 (164)
T ss_pred chhhhHHHHHHHHHHHHHHcCCceeeeeccCHHHHHHHhCcCC-CeEEEEEEeecCCCCCC
Confidence 6678999999999999999999999999999999999999996 57999999999998654
No 15
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.79 E-value=1e-18 Score=168.63 Aligned_cols=143 Identities=19% Similarity=0.303 Sum_probs=110.8
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
++|++|||+|.|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~i~~RrS~R~f~~-~~i~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~------------- 48 (166)
T cd02150 2 DAILTRRSVRKYTD-EPVSDELIEKILRAAMAAPSAG---------NQQPWRF----------VVVR------------- 48 (166)
T ss_pred cHHhhcchhhcCCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEe-------------
Confidence 58999999999998 7999999999999997 8865 4689983 3432
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR 575 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~ 575 (650)
+.+.++.|.. ....|....++++.|+++++.+.. +.+..
T Consensus 49 -~~~~~~~l~~----------------------------------~~~~~~~~~~ap~~ii~~~~~~~~------~~~~~ 87 (166)
T cd02150 49 -DRETLDKLAA----------------------------------DLPYAGMLREAPVAIVVCLDPEAE------YERTM 87 (166)
T ss_pred -CHHHHHHHHH----------------------------------hcccchHHhcCCEEEEEEEccccc------ccccc
Confidence 1221111111 112345567889989888886432 12334
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCccc----hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGCFF----DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~----dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.+.++|+++|+|+|+|+++|+|+||||+|+ ++.+++.|+|++ ++.+++.++||++.++.
T Consensus 88 ~~~~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~iG~~~~~~ 150 (166)
T cd02150 88 WVQDCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVRELLGLPE-NVEPMAVIPIGYPAEEP 150 (166)
T ss_pred hHhHHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHHHhCCCC-CcEEEEEEEEEccCCCC
Confidence 678999999999999999999999999998 578999999997 57999999999998764
No 16
>cd03370 NADH_oxidase NADPH_oxidase. Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.79 E-value=1.4e-18 Score=166.21 Aligned_cols=143 Identities=22% Similarity=0.314 Sum_probs=111.4
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ ++|+.++|..||+++. |+++ +.|||++ ++|.
T Consensus 2 ~~~i~~RrS~R~f~~-~~i~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~------------ 49 (156)
T cd03370 2 TEAIERRRSIRQFDT-DPIPEDLLRRLLEAALRAPSAF---------NLQPWRI----------VVVQ------------ 49 (156)
T ss_pred hHHHhhCeeecccCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEc------------
Confidence 578999999999998 7999999999999997 8865 4689983 3432
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP 574 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr 574 (650)
+.+.+++|. ..+.+|..+.+|+.+++++++... + +.
T Consensus 50 --~~~~~~~l~----------------------------------~~~~~~~~~~~ap~~ii~~~~~~~-------~-~~ 85 (156)
T cd03370 50 --DPAQKEALF----------------------------------AAALGQPQVLEAPVTVVFVADDYA-------W-RA 85 (156)
T ss_pred --CHHHHHHHH----------------------------------HHhcCCchhhCCCEEEEEEeCcHH-------H-HH
Confidence 222211121 122366777889999988887321 1 12
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
....++|+.+|+|+|+|+++|||+||||+|.++.|+++|||+++++.+++.++||++.++.
T Consensus 86 ~~~~d~~~~~~~l~L~A~~lGlgs~~i~~~~~~~v~~~l~l~~~~~~~~~~i~iG~~~~~~ 146 (156)
T cd03370 86 EGLKQAMIAAGFLLLAATALGLATSPMTGFDEEKVKEALGLPGRDRAIAVVVAVGYPAEEP 146 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCcCcCHHHHHHHhCcCCcCceEEEEEEeecCCCCC
Confidence 2457999999999999999999999999999999999999997456899999999998765
No 17
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=99.78 E-value=1.9e-18 Score=170.32 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=117.4
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ ++|+.|+|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 ~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------vvv~------------ 49 (193)
T cd02144 2 YELMKRRRSVRKFSD-EPVPREVIENCIRTAGTAPSGA---------NTQPWTF----------VVVS------------ 49 (193)
T ss_pred hhHHhhceeccCCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEeC------------
Confidence 578999999999998 7999999999999997 9876 5799993 5543
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP 574 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr 574 (650)
+++.++.|+...............+. .. + .++.. ......+....+++++++++++............-.
T Consensus 50 --~~~~~~~l~~~~~~~~~~~~~~~~~~--~~--~--~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~ 119 (193)
T cd02144 50 --DPELKHRIREIAEEEERINYEGRMGK--EW--V--WDLKP--LGTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHY 119 (193)
T ss_pred --CHHHHHHHHHHHHHHhHHHHHHHHHH--HH--H--HHHhh--hhhhhccchhhcCCEEEEEEeeccccCCccccccCC
Confidence 23333444443321100000000000 00 0 00000 111224566778999998888753221111111111
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-HHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFD-DPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-d~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
....++|+.+|+|+|+|+++|||+|++++|+. +.++++|||++ ++.+++.++||||.++.
T Consensus 120 ~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~~~~~v~~~l~ip~-~~~~~~~i~lGy~~~~~ 180 (193)
T cd02144 120 YNEESVSIACGLLLAALQNAGLGTVTTTPLNMGPFLRRLLGRPA-NEKLLMLLPVGYPDDDA 180 (193)
T ss_pred cchhhHHHHHHHHHHHHHHCCCceeecCCcchhHHHHHHhCCCC-CCceEEEEEeecCCCCC
Confidence 34679999999999999999999999999887 89999999997 57999999999998764
No 18
>PRK10828 putative oxidoreductase; Provisional
Probab=99.78 E-value=2.8e-18 Score=168.51 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=112.2
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ ++|+.|+|.+||+++. ||+. |.|||+ |++|.+
T Consensus 1 m~~~~~i~~RRSvR~f~~-~~v~~e~i~~ileaA~~APS~~---------N~Qpw~----------fvvv~~-------- 52 (183)
T PRK10828 1 MDALELLLNRRSASRLAE-PAPTGEQLQNILRAGMRAPDHG---------SLQPWR----------FFVIEG-------- 52 (183)
T ss_pred CcHHHHHHHcccccccCC-CCcCHHHHHHHHHHHHhCcCcC---------CccceE----------EEEEcc--------
Confidence 357789999999999997 7999999999999997 9875 579999 355532
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+.++.|++.+.... ... ....+. . .-.+....+|+++++++++.+. +..
T Consensus 53 -------~~~~~l~~~~~~~~-~~~--------------~~~~~~-~---~~~~~~~~~Ap~~ivv~~~~~~-----~~~ 101 (183)
T PRK10828 53 -------EGRERFSALLEQGA-IAA--------------GSDEKA-I---EKARNAPFRAPLIITVVAKCEE-----NHK 101 (183)
T ss_pred -------HHHHHHHHHHHHHH-Hhc--------------CCCHHH-H---HHHHhhcccCCEEEEEEEecCC-----CCC
Confidence 22334443221100 000 000000 0 0011223468888888875431 111
Q ss_pred cch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 572 MYP-RLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 572 ~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
... ....++|+++|||+|+|+++|||+||+++ ++++.++++||+|+ ++.+++.++||||.++.+
T Consensus 102 ~~~~~~~~d~~~a~~nl~LaA~a~GlGs~w~~~~~~~~~~~~~~L~ip~-~~~~~~~i~lGyp~~~~~ 168 (183)
T PRK10828 102 VPRWEQEVSAGCAVMAMQMAAVAQGFNGIWRSGAWTESPVVREAFGCRE-QDKIVGFLYLGTPQLKAS 168 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCCccCHHHHHHcCCCC-CCEEEEEEEeeCCCCCCC
Confidence 111 23579999999999999999999999965 56679999999997 679999999999987654
No 19
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases. Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....
Probab=99.78 E-value=2.2e-19 Score=170.97 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=117.3
Q ss_pred HHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCC
Q 006333 420 VRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRN 497 (650)
Q Consensus 420 I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~ 497 (650)
|++|||+|.|++ ++|+.++|.+||+++. ||+. +.|||++ +++.+.++
T Consensus 1 i~~RrS~R~f~~-~~v~~~~l~~il~~a~~aPs~~---------~~~p~~~----------~vv~~~~~----------- 49 (165)
T PF00881_consen 1 IRNRRSIRDFDP-EPVPDEDLEEILEAARWAPSSG---------NLQPWRF----------YVVNDQEG----------- 49 (165)
T ss_dssp HHHSSB-SSBES-TSSEHHHHHHHHHHHHTS--GG---------GGGGEEE----------EEEESHHH-----------
T ss_pred CcccEeccccCC-CCCCHHHHHHHHHHHHHhhhcc---------cccchhe----------eeeccccc-----------
Confidence 789999999998 7899999999999997 7754 4578873 34343322
Q ss_pred cchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhh-hcccccccccCceEEEEeeecchhhhccccccchHH
Q 006333 498 EDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKG-LSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRL 576 (650)
Q Consensus 498 ~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~-l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~ 576 (650)
++.+.+.+.. ............... ..+.|.+..++++++++..........++.+.++..
T Consensus 50 ---~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~ 111 (165)
T PF00881_consen 50 ---RYRLADAAHE---------------AIREKEASADEASSRAAAGNQKAIKGAPVLIIITSIFPREEAKYGERSYRWA 111 (165)
T ss_dssp ---HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHTTHHHHHHHSSEEEEEHHHHHHHHTTTHHHHHHHH
T ss_pred ---ccchHHHHHH---------------HHHHhhcchhhHHHhHHHhhhhHHHhCchheeeecccccccccccccccHHH
Confidence 2223322110 000000111111111 256788889999999886666666677788899999
Q ss_pred HHHHhHHHHHHHHHHHHcCCCeeeeCccchHH-HHhHhCCCCCCceEEEEEEccc
Q 006333 577 FWETGVLGQVLYLEAHAVGISATGIGCFFDDP-VHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~-v~e~LgL~~~~~~~ly~~avG~ 630 (650)
++++|+++|+|+|+|+++||++|++++|+++. ++++|||++ ++.++++++|||
T Consensus 112 ~~~~g~~~q~l~L~a~a~Gl~~~~~~~~~~~~~~~~~lgl~~-~~~~~~~i~vGy 165 (165)
T PF00881_consen 112 LIDAGIAAQNLLLAATALGLGSCPMGGFDDDKELKELLGLPD-NEEPLALIAVGY 165 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEGGSGHHHHHHHHHTHHT-TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEecCcchHHHHHHHhCcCC-CCEEEEEEEecC
Confidence 99999999999999999999999999999999 999999996 678999999997
No 20
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=99.78 E-value=3.9e-18 Score=169.11 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=120.8
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 e~i~~RRSiR~F~~-~~V~~e~i~~ileaA~~APS~~---------N~Qpw~f----------vVv~------------- 48 (196)
T cd02145 2 RAIRWRRDVRHFFP-DPVPEEVLERLLAAAHHAPSVG---------LSQPWRF----------IRVR------------- 48 (196)
T ss_pred hHHHhhhhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc-------------
Confidence 68999999999998 7899999999999997 9876 5799993 5553
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhc-cccccch
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSN-KNVWMYP 574 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~-yg~~~Yr 574 (650)
+++.+++|.+.+..... .... ...++.... .....+....+++..++++.+....... ++.+.++
T Consensus 49 -~~~~~~~l~~~~~~~~~--~~~~---------~~~~~~~~~--~~~~~~~~~~~ap~~ii~~~~~~~~~~~~~~~~~~~ 114 (196)
T cd02145 49 -DPATRAAIKALFEEERA--EAAE---------AYPGERAAE--YARLKLEGILEAPVNLAVFCDRDRAGGHVLGRATMP 114 (196)
T ss_pred -CHHHHHHHHHHHHHHHH--HHHh---------hccchhHHH--HHHHHhhhhhcCCeEEEEEEecccccccCCCccCch
Confidence 33344555544321100 0000 001111110 1111223346788888888875432221 2333332
Q ss_pred -HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCcccc
Q 006333 575 -RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMS 639 (650)
Q Consensus 575 -~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~~ 639 (650)
....++|+++|||+|+|+++|||+|++|+|+.+.++++|||++ ++.+++.++||||.++..+..
T Consensus 115 ~~~~~~~~ia~~nl~LaA~~~Glgt~~~~~~~~~~v~~~l~lp~-~~~~~~~l~lGy~~~~~~~~~ 179 (196)
T cd02145 115 EMDLYSVVCAIQNLWLAARAEGLGVGWVSILDPEALARLLGIPE-DWEPVAYLCLGYVSEFPDTPE 179 (196)
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCceEEecccChHHHHHHcCcCC-CcEEEEEEEEecCCCCCCCcH
Confidence 3467899999999999999999999999999999999999997 689999999999999886643
No 21
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=99.77 E-value=5.8e-18 Score=167.44 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=114.2
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
|+|++|||+|+|++ ++|+.|+|.+||+++. ||+. |.|||+ +++|.
T Consensus 1 ~~i~~RRSvR~f~~-~~V~~e~l~~il~aA~~APS~~---------n~Qpw~----------fvvv~------------- 47 (194)
T TIGR03553 1 QAVLLRRSVRRFSD-DPVDPDAVRAAVAAALTAPAPH---------HTRPVR----------FVWVE------------- 47 (194)
T ss_pred ChHHhccccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeE----------EEEEe-------------
Confidence 47999999999998 7999999999999997 8875 579999 35554
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc--c--
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV--W-- 571 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~--~-- 571 (650)
+++.+++|.+.+... |... +. -... ..+ ....... .+.+..+|+..++++.+.... ..+.. +
T Consensus 48 -~~e~~~~l~~~~~~~--~~~~--~~----~~~~-~~~--~~~~~~~-~~~~~~~ap~~iv~~~~~~~~-~~~~~~~~~~ 113 (194)
T TIGR03553 48 -DAERRTRLLDAMADA--WRAD--LR----ADGL-SAD--AIDRRVA-RGDILRDAPELVIPCLVPDGA-HSYPDERRTA 113 (194)
T ss_pred -CHHHHHHHHHHHHHH--HHHh--hh----hccC-chH--HHHHHhh-hhhhHhcCCeEEEEEEccccc-ccCCcccccc
Confidence 334455555443211 1000 00 0000 000 0000111 224456788888777643211 11111 1
Q ss_pred -cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 572 -MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 572 -~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
.......++|+++|||+|+|+++|||+||+|+ |+.+.|+++|||++ ++.+++.++||+|.++..
T Consensus 114 ~~~~~~~~~~g~a~qnl~LaA~~~Glgt~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~iG~p~~~~~ 180 (194)
T TIGR03553 114 AEHTMFTVAVGAAVQNLLVALAVEGLGSCWVGSTIFAADVVRAELDLPA-DWEPLGAVAVGHPAEPPG 180 (194)
T ss_pred cchhhHHhHHHHHHHHHHHHHHHcCCCeEEecCcccCHHHHHHHhCcCC-CceEEEEEEEecCCCCCC
Confidence 11223579999999999999999999999998 88889999999997 679999999999988653
No 22
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=99.77 E-value=6.5e-18 Score=168.81 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=120.4
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
..+.++|++|||+|.|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 7 ~~~~~~i~~RRSiR~f~~-~~i~~e~l~~il~aA~~APS~~---------n~Qpw~f----------vvv~--------- 57 (205)
T TIGR02476 7 AAVYRLIRERRDVRHFRS-DPVPEAVLERLLDAAHHAPSVG---------FSQPWRF----------VRVE--------- 57 (205)
T ss_pred HHHHHHHHhhhhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc---------
Confidence 368899999999999997 7999999999999996 9875 5799993 4543
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hcccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SNKNV 570 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~yg~ 570 (650)
+.+.++.|...+... .+.. . ....++.... .....+....+++++++++++..... ..++.
T Consensus 58 -----~~e~~~~l~~~~~~~--~~~~--------~-~~~~~~~~~~--~~~~~~~~~~~aP~~iiv~~~~~~~~~~~~~~ 119 (205)
T TIGR02476 58 -----SPATREAVHALFTRA--NQAA--------A-AIYDGERASQ--YHRLKLEGIREAPVQLAVFCDDARGEGHGLGR 119 (205)
T ss_pred -----CHHHHHHHHHHHHHH--HHHH--------h-hhcchhhHHH--HHHhhhcchhcCCeEEEEEeeccccccccccc
Confidence 223334444332210 0000 0 0001111000 01112344567888888888754311 11111
Q ss_pred ccch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCccc
Q 006333 571 WMYP-RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIM 638 (650)
Q Consensus 571 ~~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~ 638 (650)
..++ ....++|+++|||+|+|+++|||+|+||+|+.++|+++|||++ ++++++.++||+|.++...-
T Consensus 120 ~~~~~~~~~~~g~A~~nl~LaA~~~GlGs~~~~~~~~~~v~~~L~lp~-~~~~~~~l~iGyp~~~~~~~ 187 (205)
T TIGR02476 120 HTMPEMLRYSVACAIQNLWLAARAEGLGVGWVSILDPDAVRRLLGVPE-GWRLVAYLCLGWPDAFYDEP 187 (205)
T ss_pred cccchhhhccHHHHHHHHHHHHHHCCCcceeecccChHHHHHHhCcCC-CceEEEEEEeecCCccCCCC
Confidence 1112 2457899999999999999999999999999999999999997 68999999999998877443
No 23
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.74 E-value=2.4e-17 Score=160.55 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=110.6
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL 494 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y 494 (650)
.++|++|||+|+|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~~i~~RrSvR~f~~-~~v~~e~l~~il~~a~~aPs~~---------n~q~~~f----------~vv~------------ 49 (178)
T cd02136 2 DEAIKSRHSVRAFLP-DPVPRETIEEILAAAQRAPSGC---------NTQPWQV----------YVVT------------ 49 (178)
T ss_pred hHHHhhchhhhcCCC-CCCCHHHHHHHHHHHHhCcccc---------CCCCEEE----------EEEC------------
Confidence 478999999999998 7999999999999987 8875 4689983 3443
Q ss_pred cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333 495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP 574 (650)
Q Consensus 495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr 574 (650)
+ +.+++|.+... +-. ....+........ ..+....++++.++++++... -.
T Consensus 50 --~-~~~~~l~~~~~----~~~------------~~~~~~~~~~~~~-~~~~~~~~ap~~i~~~~~~~~---------~~ 100 (178)
T cd02136 50 --G-EALDRLRQLYG----ALG------------IAREDKAGRARQA-LRNFRFFGAPVGLFFTIDRRL---------GP 100 (178)
T ss_pred --c-HHHHHHHHHHH----HcC------------CCcccHHHHHHHH-hhcccccCCCEEEEEEecCCC---------Cc
Confidence 1 22333333211 000 1111222211111 122335668887777655320 12
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..+.++|+++|||+|+|+++|||+||||+|. ++.++++|||++ ++.+++.++||+|.++.
T Consensus 101 ~~~~~~g~a~~nl~Laa~~lGlgt~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~iG~~~~~~ 162 (178)
T cd02136 101 GSALDLGMFLQTIMLAARARGLDTCPQAALAKYPDIVREELGIPD-DEMLVCGIALGYADPDA 162 (178)
T ss_pred chHHhHHHHHHHHHHHHHHcCCccccccccccCcHHHHHHhCCCC-CceEEEEEEeccCCCcC
Confidence 3568999999999999999999999999975 678999999997 57899999999998865
No 24
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=99.73 E-value=4.1e-17 Score=155.87 Aligned_cols=155 Identities=24% Similarity=0.267 Sum_probs=107.9
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
++|++|||+|+|++ ++|+.|+|.+||+++. ||+. |.|||++ ++|.+
T Consensus 2 ~~i~~RrSvR~f~~-~~v~~e~l~~il~aA~~APs~~---------n~Qpw~f----------~vv~~------------ 49 (160)
T cd02135 2 DLLLTRRSIKKLTL-PAPDREQLEQILEAAARAPDHG---------KLEPWRF----------IVIRG------------ 49 (160)
T ss_pred cHHHhcccchhcCC-CCCCHHHHHHHHHHHHhCCCcC---------CccCeEE----------EEEec------------
Confidence 57999999999998 7999999999999987 8875 5699993 45442
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR 575 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~ 575 (650)
+ .++.|.+.+...+.... . +.. . .....+....++++.++++++.+... ......
T Consensus 50 --~-~~~~l~~~~~~~~~~~~--~---------~~~-~------~~~~~~~~~~~ap~~i~~~~~~~~~~----~~~~~~ 104 (160)
T cd02135 50 --E-ARERLAELLAEAAAREP--G---------APE-E------QIEKAREKALRAPLVIAVVAKPQPHP----KVPEWE 104 (160)
T ss_pred --h-HHHHHHHHHHHHHHhcc--C---------CCH-H------HHHHHHccccCCCEEEEEEEecCCCC----CCCHHH
Confidence 1 12233332211000000 0 000 0 00112356678899998888864321 111223
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccc
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~ 630 (650)
.+.++|+++|+|+|+|+++|||+||+|++ +++.++++|||++ ++.++..++|||
T Consensus 105 ~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~ip~-~~~~~~~i~lGy 160 (160)
T cd02135 105 QLLAAGAAIQNLLLAAHALGFGAVWRTGWAAYDPAVREALGLAE-GERIVGFLYIGT 160 (160)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEeecCCcccCHHHHHHhCCCC-CCEEEEEEEecC
Confidence 46799999999999999999999999875 5678999999997 678999999997
No 25
>cd02143 NADH_nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.69 E-value=1.4e-16 Score=150.83 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=102.9
Q ss_pred HHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecC
Q 006333 419 VVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVR 496 (650)
Q Consensus 419 ~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~ 496 (650)
+|++|||+|+|++ ++|+.++|.+|++++. ||+. +.|||++ +++.+.
T Consensus 1 ~i~~RrSvR~F~~-~~i~~~~l~~il~aa~~aPs~~---------n~qp~~f----------~vv~~~------------ 48 (147)
T cd02143 1 LLRGRRSVRHYRP-EPVPRETIERLLDIARYAPTGS---------NSQPVHF----------TVVDDP------------ 48 (147)
T ss_pred CcccceeeecCCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEeCH------------
Confidence 3689999999998 7999999999999987 8864 4689983 444321
Q ss_pred CcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHH
Q 006333 497 NEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRL 576 (650)
Q Consensus 497 ~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~ 576 (650)
. . ...+.+..+++..++++++.+. . ..
T Consensus 49 ---~-----~-----------------------------------~~~~~~~~~ap~~i~~~~~~~~------~----~~ 75 (147)
T cd02143 49 ---W-----E-----------------------------------KGIDPIFRGAPHLLLASAPRDF------P----TA 75 (147)
T ss_pred ---H-----H-----------------------------------cCcCceecCCCEEEEEEECCCC------C----Cc
Confidence 0 0 0012345678888888876431 1 24
Q ss_pred HHHHhHHHHHHHHHHHHcCCCeeeeCccch-----HHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 577 FWETGVLGQVLYLEAHAVGISATGIGCFFD-----DPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-----d~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
+.|+|+++|+|+|+|+++|+|+||+|+|.. +++++.|+|++ ++.+++.++||+|.++.
T Consensus 76 ~~d~g~a~~~l~LaA~~lGlgs~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~iaiG~~~~~~ 138 (147)
T cd02143 76 QVDAIIALTYFELAAQALGLGTCWAGFFQAAAELYPPLRDRLGLPE-GHKVGYAMMFGYPAVKP 138 (147)
T ss_pred cchHHHHHHHHHHHHHHcCCCEehhhhHHHHhhhhHHHHHHcCcCC-CcEEEEEEEEecCCCCC
Confidence 679999999999999999999999998663 89999999997 57899999999998866
No 26
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=99.68 E-value=3.3e-16 Score=172.63 Aligned_cols=172 Identities=21% Similarity=0.242 Sum_probs=117.4
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333 416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF 493 (650)
Q Consensus 416 l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~ 493 (650)
+.++|++|||+|+|++ ++|+.|+|.+||+++. ||++ |.|||++ ++|.
T Consensus 253 ~~eaI~~RRSvR~F~~-~pVp~E~I~~ILeAA~~APS~~---------N~QPWrF----------VVV~----------- 301 (448)
T PRK13294 253 RREAVLLRRSVREFSD-DPVDPEAVRRAVAAALTAPAPH---------HTRPVRF----------VWLR----------- 301 (448)
T ss_pred HHHhhhcCCccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEe-----------
Confidence 5789999999999998 7999999999999997 9875 5799993 5543
Q ss_pred ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc--c
Q 006333 494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV--W 571 (650)
Q Consensus 494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~--~ 571 (650)
+++.+++|.+.+.. .|... ... ... ... ...+... .+.++.+|++.++++.+.+... .+.. .
T Consensus 302 ---d~e~r~kL~~~~~~--~~~~~--l~~----~~~-~~~--~~~~~~~-~~~~~~~AP~lIvv~~~~~~~~-~~~~~~~ 365 (448)
T PRK13294 302 ---SAAVRTRLLDAMRD--AWRAD--LRA----DGL-SEE--SIARRVR-RGDILYDAPELVVPFLVPDGAH-SYPDARR 365 (448)
T ss_pred ---CHHHHHHHHHHHHH--HHHHh--hhh----ccc-cHH--HHHHHhh-hcchhhcCCeEEEEEEeccccc-ccccccc
Confidence 33344455544321 11110 000 000 001 1111111 3345677888887776543211 1110 0
Q ss_pred ---cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 572 ---MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 572 ---~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.....+.++|+++|||+|+|+++|||+|||++ |+.+.|+++|||++ ++++++.++||||.++.
T Consensus 366 ~~~e~~~~~~daG~AaqNL~LAA~alGLGScwig~~~~d~~~Vre~LgLPe-~~~~v~~IaIGyPa~~~ 433 (448)
T PRK13294 366 TAAERTMFTVAVGAAVQNLLVALAVEGLGSCWIGSTIFAADVVRAVLDLPA-DWEPLGAVAIGHPAEPP 433 (448)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHCCCcEEEecccccChHHHHHHhCcCC-CcEEEEEEEEeCcCCCC
Confidence 11234689999999999999999999999987 88899999999997 68999999999998765
No 27
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.68 E-value=1.9e-16 Score=156.53 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=101.6
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333 417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF 493 (650)
Q Consensus 417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~ 493 (650)
.++|++|||+|+|+++.+|+.|+|..||+++ . ||++ |.|||++ ++|.+
T Consensus 2 ~e~i~~RRSiR~f~~~~~V~~e~l~~ileaA~~~APS~~---------N~QPW~f----------~Vv~~---------- 52 (192)
T cd02140 2 LEAIKARRSIYALGKNLPVSDDEIEEIVKEAVKHSPSSF---------NSQSSRA----------VILFG---------- 52 (192)
T ss_pred HHHHhhCeehhccCCCCCCCHHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEEC----------
Confidence 4789999999999863589999999999966 3 9976 5799994 45432
Q ss_pred ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------hc
Q 006333 494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------SN 567 (650)
Q Consensus 494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------~~ 567 (650)
+.++.|.+.+..... ... +. ..+ ...... .+.+ ..++.+++++++.+... ..
T Consensus 53 -----~~~~~~~~~~~~~~~--~~~--~~--~~~---~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (192)
T cd02140 53 -----EEHEKLWDIVKDTLR--AIV--PA--EAF---AATKEK-------LDGF-KAGYGTVLFFEDQAVVKGLQEKFPL 110 (192)
T ss_pred -----hHHHHHHHHHHHHHH--hcC--Ch--hhc---ccchhH-------HHHH-HHhhceeeeeechHHHHHHHHHhHH
Confidence 222223221110000 000 00 000 000000 0111 23344444444422110 00
Q ss_pred cccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 568 KNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 568 yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
+......+...++|+++|||+|+|+++|||+|++++ ++++.|+++||+++ ++.++++++||||.++.
T Consensus 111 ~~~~~~~~~~~d~~~a~~nl~LaA~~~GlGs~~~~~~~~~~~~v~~~l~ip~-~~~~v~~i~lGyp~~~~ 179 (192)
T cd02140 111 YADNFPVWSEQSSGMAQIAVWTALAAEGIGANLQHYNPLIDEEVAKKWNIPS-NWKLRAQLVFGSPEAPA 179 (192)
T ss_pred HHhhCccchhhhhHHHHHHHHHHHHhCCCcccHHHhCccCCHHHHHhcCCCc-cceEEEEeecccCCCCC
Confidence 111111234569999999999999999999996542 45599999999997 67999999999998764
No 28
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases. Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....
Probab=99.65 E-value=1.7e-17 Score=158.01 Aligned_cols=149 Identities=27% Similarity=0.343 Sum_probs=113.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|.+||+. .|.+||+||+|||++|++ .+.++ .|.+....+.+....
T Consensus 8 R~f~~~~v~~~~l~~il~~----------------a~~aPs~~~~~p~~~~vv-~~~~~------~~~~~~~~~~~~~~~ 64 (165)
T PF00881_consen 8 RDFDPEPVPDEDLEEILEA----------------ARWAPSSGNLQPWRFYVV-NDQEG------RYRLADAAHEAIREK 64 (165)
T ss_dssp SSBESTSSEHHHHHHHHHH----------------HHTS--GGGGGGEEEEEE-ESHHH------HHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHH----------------HHHhhhcccccchheeee-ccccc------ccchHHHHHHHHHHh
Confidence 3567888999999999998 488999999999999998 44332 333322222222211
Q ss_pred cCCchh------ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHH-
Q 006333 224 KIPSRF------DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKE- 296 (650)
Q Consensus 224 ~~~~~~------~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~- 296 (650)
...... ...+..+.+++++|+++....+...+|+++.+++.++|+|+++||++|+|+++||++|++++|+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~l~L~a~a~Gl~~~~~~~~~~~~~ 144 (165)
T PF00881_consen 65 EASADEASSRAAAGNQKAIKGAPVLIIITSIFPREEAKYGERSYRWALIDAGIAAQNLLLAATALGLGSCPMGGFDDDKE 144 (165)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSSEEEEEHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEGGSGHHHH
T ss_pred hcchhhHHHhHHHhhhhHHHhCchheeeecccccccccccccccHHHHHHHHHHHHHHHHHHHhcCceEEEecCcchHHH
Confidence 111000 0112456799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcceeeeccc
Q 006333 297 LKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 297 l~~lLgLd~~~E~v~~~~~i 316 (650)
++++|||+. .|.++.+++|
T Consensus 145 ~~~~lgl~~-~~~~~~~i~v 163 (165)
T PF00881_consen 145 LKELLGLPD-NEEPLALIAV 163 (165)
T ss_dssp HHHHHTHHT-TEEEEEEEEE
T ss_pred HHHHhCcCC-CCEEEEEEEe
Confidence 999999994 4667777766
No 29
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=99.64 E-value=1.4e-15 Score=138.29 Aligned_cols=118 Identities=24% Similarity=0.350 Sum_probs=93.6
Q ss_pred HHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCC
Q 006333 420 VRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRN 497 (650)
Q Consensus 420 I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~ 497 (650)
|++|||+|+|++ ++|+.+++.+|++++. ||+. +.|||++ +++
T Consensus 1 ~~~RrS~R~f~~-~~i~~~~l~~l~~~~~~aPs~~---------n~qp~~~----------~~v---------------- 44 (122)
T cd02062 1 ILKRRSVRKFTD-EPVPEEVLEKILEAARYAPSGG---------NLQPWRF----------VVV---------------- 44 (122)
T ss_pred CccceecccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEE----------------
Confidence 468999999998 7999999999999886 8764 5689983 222
Q ss_pred cchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHH
Q 006333 498 EDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLF 577 (650)
Q Consensus 498 ~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~ 577 (650)
.+++..++++++.+.... ..+...
T Consensus 45 ---------------------------------------------------~~ap~~i~~~~~~~~~~~-----~~~~~~ 68 (122)
T cd02062 45 ---------------------------------------------------YGAPVLIIVCADKDAARP-----SGPWAE 68 (122)
T ss_pred ---------------------------------------------------eCCCEEEEEEeccccccc-----cCccHH
Confidence 123444555554332211 234567
Q ss_pred HHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccc
Q 006333 578 WETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 578 ~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~ 630 (650)
.++|+++|+|+|+|+++|+|+||+++++ ++++.+.|++++ ++.++..++||+
T Consensus 69 ~~~g~a~~~l~l~a~~~Glg~~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~~G~ 122 (122)
T cd02062 69 ADAGIAAQNILLAAHALGLGSCWIGGLDLVEEELRELLGIPE-GYEILAVIAVGY 122 (122)
T ss_pred hHHHHHHHHHHHHHHHcCCCchhcCCcccchHHHHHHhCcCC-CcEEEEEEEeeC
Confidence 9999999999999999999999999999 999999999997 578999999996
No 30
>COG0778 NfnB Nitroreductase [Energy production and conversion]
Probab=99.57 E-value=2.4e-14 Score=141.02 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=112.1
Q ss_pred CcHHHHHHhcCCCCCCC-CCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 414 FTVREVVRKRRSAVDMD-GVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~-~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
+.+.++|++|||+|.|+ + .+|+.++|.+||+++. ||+. +.|||++ ++|.
T Consensus 3 ~~~~~~i~~RrS~R~f~~~-~pi~~e~l~~il~aa~~aPs~~---------n~qpw~f----------i~v~-------- 54 (207)
T COG0778 3 MDILEAIRSRRSIRKFDSP-KPIPEEDLEKILEAARLAPSAG---------NLQPWRF----------IVVR-------- 54 (207)
T ss_pred hHHHHHHHHhhhhhccCCC-CCCCHHHHHHHHHHHHhCcCcc---------CCcceEE----------EEEc--------
Confidence 56889999999999999 6 8999999999999997 8864 5799993 4443
Q ss_pred eeeecCCc-chhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhccc-ccccccCceEEEEeeecch-----
Q 006333 491 LYFLVRNE-DHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCH-QDIAGDGCFSLGMVAHFEP----- 563 (650)
Q Consensus 491 lY~y~~~~-~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~-Q~~~~~aa~~l~~~a~~~~----- 563 (650)
+. +.++.|.+ .+.. |....++...++++++...
T Consensus 55 ------~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (207)
T COG0778 55 ------DEDELKAALAE----------------------------------LAGGGQAQLKEASALLAVLADLESLDKVA 94 (207)
T ss_pred ------CcHHHHHHHHH----------------------------------hhhhhhhhcccCCeEEEEEeehhhhhhcc
Confidence 23 32222221 1112 4445556666666665431
Q ss_pred ------h------------hhcccc-ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCC---Cce
Q 006333 564 ------T------------LSNKNV-WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGS---KFQ 621 (650)
Q Consensus 564 ------~------------~~~yg~-~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~---~~~ 621 (650)
. ...++. ...+....++++++|||+|+|+++|+|+||||+|..+.+.+.++++.. .+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nl~Laa~~~Glg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (207)
T COG0778 95 EGRAPDLGAAVFLLAERRKLLGYGRRAALEYALDAASIAAQNLLLAAEALGLGSCWIGGFDAEDLKELLRELLGLPEEEK 174 (207)
T ss_pred cccccHHHHHHHhcccchhhcccchhhhHHHHHHHHHHHHHHHHHHHHHcCCCcccCccccHHHHHHHHhcccccCccee
Confidence 0 001111 234567788888999999999999999999999999988888887632 278
Q ss_pred EEEEEEccccCCcCc
Q 006333 622 SLYHFTVGGPVVDRR 636 (650)
Q Consensus 622 ~ly~~avG~p~~d~r 636 (650)
+++.+++|++.++..
T Consensus 175 ~~~~l~lG~~~~~~~ 189 (207)
T COG0778 175 PVGLLALGYPAEEPP 189 (207)
T ss_pred EEEEEEeecCCCCcC
Confidence 999999999998765
No 31
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=99.56 E-value=2.4e-14 Score=136.97 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=97.3
Q ss_pred CCCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+.++ +++.++|.+||+. .+.+||++|++||+++|+... +... .+
T Consensus 13 R~f~~~~~v~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l 59 (157)
T cd02149 13 KAFDPSKKISDEDLEEILEA----------------LRLSPSSFGLQPWKFLVVENE-ELKA----------------RL 59 (157)
T ss_pred hccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCccCeEEEEeCCH-HHHH----------------HH
Confidence 357776 9999999999987 588999999999998877542 1111 11
Q ss_pred ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhC
Q 006333 223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMG 302 (650)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLg 302 (650)
.+.. . ..+.++.++|++|+++++. .+...|+|.++||++|+|+++|||+||+++|+++.++++||
T Consensus 60 ~~~~--~-~~~~~~~~ap~~i~~~~~~------------~~~~~d~~~a~~~l~LaA~~lGlgs~~i~~~~~~~v~~~l~ 124 (157)
T cd02149 60 APAA--W-FNQPQVTDASHLVVFLART------------DWAAKQAYIALGNMLLAAASLGIDSCPIEGFDPAKLDEILG 124 (157)
T ss_pred hhhh--h-cCCcccCCCCEEEEEEecH------------HHHHHHHHHHHHHHHHHHHHcCCCcCcccCcCHHHHHHHhC
Confidence 1110 0 0124567899999998873 23457999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeccc
Q 006333 303 LDIFPEFVIPSKPI 316 (650)
Q Consensus 303 Ld~~~E~v~~~~~i 316 (650)
|++..+.++++++|
T Consensus 125 l~~~~~~~~~~i~i 138 (157)
T cd02149 125 LDEKGYGSSVMVAL 138 (157)
T ss_pred CCcccCceEEEEEe
Confidence 98765558888888
No 32
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.56 E-value=1.3e-14 Score=139.56 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=104.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|..||+. .+.+||++|++||+++|+... +... .+.
T Consensus 12 R~f~~~~v~~e~l~~ll~a----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l~ 58 (164)
T cd02139 12 RKYKDDPVEEEKLERILEA----------------ARLAPSAKNLQPWRFIVVESE-EGLK----------------KLA 58 (164)
T ss_pred eccCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH-HHHH----------------HHH
Confidence 3577889999999999997 588999999999998887542 1111 111
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
.. ..+.++.++|.+|+++++... .++...+++++..+|+|+++||++|+|+++|+|+|++++|+++.++++|||
T Consensus 59 ~~-----~~~~~~~~ap~~ii~~~~~~~-~~~~~~~~~~~~~~d~g~a~~~l~l~A~~~Glgt~~~~~~~~~~~~~~l~l 132 (164)
T cd02139 59 AA-----YARKWLQTAPVVIVVCGDKNE-AWVRKIDGKNSYETDLAIAMEHMMLAAAELGLGTCWIGAFDEDEIKEALDI 132 (164)
T ss_pred HH-----hccchhhcCCeEEEEEEcchh-hcccccccCcchhhhHHHHHHHHHHHHHHcCCceeeeeccCHHHHHHHhCc
Confidence 10 013456789999999887543 344445667888999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+.. +.++++++|
T Consensus 133 ~~~-~~~~~~i~i 144 (164)
T cd02139 133 PEN-EEVVAILPL 144 (164)
T ss_pred CCC-eEEEEEEee
Confidence 954 567778777
No 33
>PRK10765 nitroreductase A; Provisional
Probab=99.52 E-value=7.5e-14 Score=142.92 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.++||+.++|.+||+. .+.+||++|+|||++++|... +-. ..+.
T Consensus 15 R~F~~~~v~~e~l~~ilea----------------A~~APSs~n~Q~~~~ivV~d~-e~~----------------~~l~ 61 (240)
T PRK10765 15 RHFTDEPISEAQREAIINA----------------ARAASSSSFLQCSSIIRITDK-ALR----------------EALV 61 (240)
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCcccCCceEEEEECCH-HHH----------------HHHH
Confidence 3578899999999999998 588999999999998777432 111 1222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchh------hhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA------FRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYK 295 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra------yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~ 295 (650)
+... .+.++.+++.+|++++++.|....+.+.. +.+..+|+|+++||++++|+++|||+|++|++ +.+
T Consensus 62 e~~~----~q~~v~~a~~~lv~~~d~~r~~~~~~~~~~~~~~~~~~~~~Dagiaaqnl~laA~slGLGs~~ig~~~~~~~ 137 (240)
T PRK10765 62 ELTG----GQKYVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLIGAVDTAIMAQNALLAAESLGLGGVYIGGLRNNIE 137 (240)
T ss_pred HHhC----CChHHHhchheEEEEEcHHHHHhhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeCccccCHH
Confidence 2110 13467899999999999888655444322 23457899999999999999999999999998 568
Q ss_pred HHHHHhCCCCCCcceeeeccc
Q 006333 296 ELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 296 ~l~~lLgLd~~~E~v~~~~~i 316 (650)
.|.++|||+.. +.++..++|
T Consensus 138 ~v~~~L~LP~~-~~~v~~l~i 157 (240)
T PRK10765 138 AVTELLKLPQH-VLPLFGLCL 157 (240)
T ss_pred HHHHHhCcCCC-ceeEEEEEE
Confidence 99999999965 567777777
No 34
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.51 E-value=1e-13 Score=133.29 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++|+.++|.+||+. .+.+||++|+|||+++|+... +.+. .+.
T Consensus 12 R~f~~~~v~~e~l~~il~a----------------a~~aPs~~n~Qp~~f~vv~~~-~~~~----------------~l~ 58 (162)
T cd02151 12 RKFTDEPVEKEKVDALLKA----------------ALRAPSSRNRRPWEFIVVTDR-EKLQ----------------ALS 58 (162)
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HHhCcCCCCCCCeEEEEECCH-HHHH----------------HHH
Confidence 4578899999999999998 578999999999999887542 1111 111
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC---------H
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG---------Y 294 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~---------d 294 (650)
..... .+.++.+||++|+++++..+ ..+...|+|+++||++|+|+++|||+||+++|+ +
T Consensus 59 ~~~~~---~~~~~~~Ap~~i~~~~~~~~---------~~~~~~d~g~a~~nl~L~A~~lGlgtc~i~~~~~~~~~~~~~~ 126 (162)
T cd02151 59 QAKEH---GSRFLAGAALAIVVVADPRK---------SDVWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAE 126 (162)
T ss_pred Hhhhh---hhhhHhcCCEEEEEEecCCC---------CccHHHHHHHHHHHHHHHHHHCCCCeeEecccccccccchhhH
Confidence 11000 12356789999999988542 123457999999999999999999999998764 5
Q ss_pred HHHHHHhCCCCCCcceeeeccc
Q 006333 295 KELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 295 ~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+.++++|||+.. +.++++++|
T Consensus 127 ~~~~~~l~lp~~-~~~~~~i~i 147 (162)
T cd02151 127 EYVRRLLNIPEH-LRVLCIIAI 147 (162)
T ss_pred HHHHHHhCcCCC-ceEEEEEEE
Confidence 789999999975 567888888
No 35
>cd02138 Nitroreductase_2 Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.50 E-value=6.7e-14 Score=137.12 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=102.1
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++++.++|.+||+. .+.+||++|++||+++|+....+ .+..+..
T Consensus 17 ~f~~~~v~~e~l~~il~~----------------a~~APs~~n~qpw~f~vv~~~~~----------------~~~~~~~ 64 (181)
T cd02138 17 AFDGEPVPREDLLSLLEA----------------ARWAPSAYNDQPWRFVYARRGTE----------------AWEKFLS 64 (181)
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEeCCcHH----------------HHHHHHH
Confidence 467889999999999998 58999999999999887754211 1111111
Q ss_pred -CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 225 -IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 225 -~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
... ..+.++.+||++|+++++... .+...+..+++..|+|+++||++|+|+++|||+||+++|+.+.|.++||+
T Consensus 65 ~~~~---~~~~~~~~Ap~~iiv~~~~~~--~~~~~~~~~~~~~d~g~a~~nl~Laa~~lGlgt~~~~~~~~~~l~~~l~l 139 (181)
T cd02138 65 LLVE---GNQGWAKNAPALIAVLSKTTF--DKNEGKPNRTHSFDTGAAWGNLALQATAMGLAAHQMGGFDADKAREELNI 139 (181)
T ss_pred HHhh---hchhHHhCCCEEEEEEEcccc--cccCCCccchhhhhHHHHHHHHHHHHHHcCcccceecCcCHHHHHHHhCC
Confidence 000 012356789999999998532 22223445688899999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+.. +.++++++|
T Consensus 140 ~~~-~~~~~~lai 151 (181)
T cd02138 140 PED-YEVEAAIAI 151 (181)
T ss_pred CCC-ceEEEEEEe
Confidence 964 567778888
No 36
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.50 E-value=1.2e-13 Score=133.33 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|.+||+. .+.+||++|++||+++|+.+. +-+. .+.
T Consensus 11 R~f~~~~i~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l~ 57 (166)
T cd02150 11 RKYTDEPVSDELIEKILRA----------------AMAAPSAGNQQPWRFVVVRDR-ETLD----------------KLA 57 (166)
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH-HHHH----------------HHH
Confidence 3467889999999999998 578999999999999988542 1111 111
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC----HHHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG----YKELKK 299 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~----d~~l~~ 299 (650)
.... .+..+.++|++|+++++..+. +...+..+|+|+++||++|+|+++|||+|++++|+ ++.|.+
T Consensus 58 ~~~~----~~~~~~~ap~~ii~~~~~~~~------~~~~~~~~~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~ 127 (166)
T cd02150 58 ADLP----YAGMLREAPVAIVVCLDPEAE------YERTMWVQDCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVRE 127 (166)
T ss_pred Hhcc----cchHHhcCCEEEEEEEccccc------ccccchHhHHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHH
Confidence 1000 123457899999999886442 23456778999999999999999999999999998 688999
Q ss_pred HhCCCCCCcceeeeccc
Q 006333 300 LMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 300 lLgLd~~~E~v~~~~~i 316 (650)
.|||++. +.++++++|
T Consensus 128 ~l~l~~~-~~~~~~l~i 143 (166)
T cd02150 128 LLGLPEN-VEPMAVIPI 143 (166)
T ss_pred HhCCCCC-cEEEEEEEE
Confidence 9999974 568888888
No 37
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.49 E-value=9.7e-14 Score=136.46 Aligned_cols=137 Identities=13% Similarity=0.026 Sum_probs=99.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.|.+++|+.++|.+||+. .|.+||++|+|||+++||... +... ++.
T Consensus 13 R~f~~~~I~~e~l~~ilea----------------a~~APS~~N~Qpw~fvvV~~~-e~~~----------------~l~ 59 (185)
T cd02148 13 NGFTDEPVSDEQLRAIYDL----------------VKWGPTAANSQPARFVFVRSA-EAKE----------------RLV 59 (185)
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECH-HHHH----------------HHH
Confidence 3577889999999999998 689999999999999887542 2211 121
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHH-------------Hhhhc--hhhhHHHHHHHHHHHHHHHHHHHcCCceEE
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-------------WKYGE--RAFRYCNHDVGHAIAAVAMAAAELGWDVKI 288 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-------------~KYg~--rayR~~~lDaG~~~q~l~LaA~alGl~~~~ 288 (650)
+.-.. ..+..+..++++|+++++..... +.|.+ ...-++..|+|.+++|++|+|+++|||+||
T Consensus 60 ~~~~~--~~~~~~~~ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~lGlgs~~ 137 (185)
T cd02148 60 PALSE--GNRAKTLAAPVTAILAYDTEFHEQLPRLFPHRDARSWFFGSPALAEETAFRNSSLQGGYFILAARALGLDAGP 137 (185)
T ss_pred HHHHH--hhHHHHhcCCEEEEEEecccHHHhHHHhCcchhhhhhhhcChHHHHHHHHHhHHHHHHHHHHHHHHcCCCcCC
Confidence 11000 01234568999998888643211 11111 123356789999999999999999999999
Q ss_pred ecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 289 LEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 289 i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
++||+++.++++|||+.. ..++.+++|
T Consensus 138 ~~g~d~~~~~~~L~lp~~-~~~v~~iav 164 (185)
T cd02148 138 MSGFDAAAVDAEFFADTR-WRSNFVVNI 164 (185)
T ss_pred CcccCHHHHHHHhCCCCC-eEEEEEEEc
Confidence 999999999999999854 457778888
No 38
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.49 E-value=1.3e-13 Score=130.44 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=94.4
Q ss_pred CCCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+.++ +++.++|.+||+. .|.+||++|.+||+++|+... +.+. .+
T Consensus 11 R~f~~~~~v~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vi~~~-~~~~----------------~l 57 (148)
T cd02137 11 RNFDPDAKIPREELKEILEL----------------ATLAPSSFNLQPWRFVVVRDP-EKKA----------------KL 57 (148)
T ss_pred cccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEECCH-HHHH----------------HH
Confidence 356776 9999999999998 588999999999999887542 1111 11
Q ss_pred ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhC
Q 006333 223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMG 302 (650)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLg 302 (650)
.... ..+..+.++|++|+++++. |+|+++||++|+|+++|||+||+++|+++.+.++||
T Consensus 58 ~~~~----~~~~~~~~ap~~i~~~~~~-----------------d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~i~~~l~ 116 (148)
T cd02137 58 AEAA----MNQPQVTTASAVILVLGDL-----------------NAGLAAMNLMLAARAYGYDTCPMGGFDAEKVAELLN 116 (148)
T ss_pred HHHH----cCCCccCCCCEEEEEEeCC-----------------hhHHHHHHHHHHHHHcCCCcCcCcCcCHHHHHHHhC
Confidence 1100 0124567899999998874 999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeccc
Q 006333 303 LDIFPEFVIPSKPI 316 (650)
Q Consensus 303 Ld~~~E~v~~~~~i 316 (650)
|+.. +.++++++|
T Consensus 117 l~~~-~~~~~~i~i 129 (148)
T cd02137 117 LPAR-YVPVMLIAI 129 (148)
T ss_pred cCCC-ceeEEEEEe
Confidence 9874 567888888
No 39
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.
Probab=99.47 E-value=2.9e-13 Score=137.66 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++|+.+.|..||+. .+.+||++|++||+++|+... +... .+.
T Consensus 12 R~f~~~~V~~e~l~~ilea----------------a~~APS~~N~Qpw~fvVv~~~-~~~~----------------~l~ 58 (229)
T cd02146 12 RKFKDEPIPDETLETLIAA----------------AQSAPTSSNLQAYSVIVVTDP-ELKA----------------KLA 58 (229)
T ss_pred cCCCCCCCCHHHHHHHHHH----------------HHHcCCcccCCceEEEEEcCH-HHHH----------------HHH
Confidence 3577889999999999998 578999999999998776432 1111 121
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhc-----------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE-----------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM 292 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~-----------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f 292 (650)
+.. ..+..+.++|++|+++++..+....+.. ..+.+...|+|+++|||+|+|+++|||+||+++|
T Consensus 59 ~~~----~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgtc~ig~~ 134 (229)
T cd02146 59 ELA----GGQPYVAQAPVFLVFCADFHRLAKIAEKHGGAEAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIGGI 134 (229)
T ss_pred Hhh----cCCchHHhCCEEEEEEeehHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 110 0123466789999999887654322221 2345678899999999999999999999999998
Q ss_pred C--HHHHHHHhCCCCCCcceeeeccc
Q 006333 293 G--YKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 293 ~--d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
. .+.|+++|||+.. +.++++++|
T Consensus 135 ~~~~~~v~~~L~lp~~-~~~~~~ial 159 (229)
T cd02146 135 RNDPEAVIELLNLPEY-VFPVFGLAV 159 (229)
T ss_pred ccCHHHHHHHhCCCCC-ceEEEEEEe
Confidence 4 4789999999964 567778888
No 40
>cd03370 NADH_oxidase NADPH_oxidase. Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.46 E-value=4.1e-13 Score=128.32 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|..||+. .+.+||++|++||+++++... +.. ..+.
T Consensus 12 R~f~~~~i~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~----------------~~l~ 58 (156)
T cd03370 12 RQFDTDPIPEDLLRRLLEA----------------ALRAPSAFNLQPWRIVVVQDP-AQK----------------EALF 58 (156)
T ss_pred cccCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEEcCH-HHH----------------HHHH
Confidence 4577889999999999998 588999999999999877542 111 1111
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
... ..+..+.+||.+|+++++-. .+. +....|+|.++|+++|+|+++|||+||+++|+++.++++|||
T Consensus 59 ~~~----~~~~~~~~ap~~ii~~~~~~--~~~------~~~~~d~~~~~~~l~L~A~~lGlgs~~i~~~~~~~v~~~l~l 126 (156)
T cd03370 59 AAA----LGQPQVLEAPVTVVFVADDY--AWR------AEGLKQAMIAAGFLLLAATALGLATSPMTGFDEEKVKEALGL 126 (156)
T ss_pred HHh----cCCchhhCCCEEEEEEeCcH--HHH------HHHHHHHHHHHHHHHHHHHHcCCCcccCcCcCHHHHHHHhCc
Confidence 110 01235678999999988731 111 125579999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+.+.+.++++++|
T Consensus 127 ~~~~~~~~~~i~i 139 (156)
T cd03370 127 PGRDRAIAVVVAV 139 (156)
T ss_pred CCcCceEEEEEEe
Confidence 9845678888888
No 41
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=99.45 E-value=3.4e-13 Score=133.73 Aligned_cols=136 Identities=13% Similarity=-0.055 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|..||.. .|.+||++|++||+++||... +... .+..
T Consensus 21 ~f~~~~I~~e~l~~ilea----------------a~~APS~~N~QPw~fvvv~~~-e~~~----------------~l~~ 67 (195)
T PRK05365 21 GWLDEPVSDEQLRELYDL----------------VKWGPTSANCSPARFVFVRSA-EAKE----------------RLRP 67 (195)
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEeCH-HHHH----------------HHHH
Confidence 467889999999999998 689999999999999887542 2211 1111
Q ss_pred CCchhccccccCCCCcEEEEEeeechhHH--H----------hhh-c--hhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWREA--W----------KYG-E--RAFRYCNHDVGHAIAAVAMAAAELGWDVKIL 289 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~--~----------KYg-~--rayR~~~lDaG~~~q~l~LaA~alGl~~~~i 289 (650)
.-.. ..+..+.+||++|+++++..... . .|. + ...-++..|+|.+++||+|+|+++|||+||+
T Consensus 68 ~~~~--~~~~~~~~Ap~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~~Glgs~~~ 145 (195)
T PRK05365 68 ALSE--GNLAKTLAAPVTAIVAYDTEFHEHLPKLFPHADARSWFAGNPALAEETAFRNSSLQGAYLILAARALGLDAGPM 145 (195)
T ss_pred HHHh--cCcchhcCCCEEEEEeeCccHhHhHHHhcchhHHHHHHcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCCccCCc
Confidence 0000 01234578999998888643211 0 011 1 1223567899999999999999999999999
Q ss_pred cccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 290 EGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 290 ~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
++|+.+.+.++|||+.. +.++.+++|
T Consensus 146 ~g~~~~~v~~~l~ip~~-~~~v~~ial 171 (195)
T PRK05365 146 SGFDAAAVDAEFFAGTT-WKSNFLVNI 171 (195)
T ss_pred cccCHHHHHHHhCCCCC-eeEEEEEEe
Confidence 99999999999999864 567788888
No 42
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=99.44 E-value=7.8e-13 Score=120.24 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=90.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|.++++. .+.+||++|++||+++++
T Consensus 8 R~f~~~~i~~~~l~~l~~~----------------~~~aPs~~n~qp~~~~~v--------------------------- 44 (122)
T cd02062 8 RKFTDEPVPEEVLEKILEA----------------ARYAPSGGNLQPWRFVVV--------------------------- 44 (122)
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEE---------------------------
Confidence 4577889999999999998 578999999999999887
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHHh
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKLM 301 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~lL 301 (650)
.++|.+|+++++..+..+ ..++..+|+|+++||++++|+++|+++|++++++ ++.++++|
T Consensus 45 -------------~~ap~~i~~~~~~~~~~~-----~~~~~~~~~g~a~~~l~l~a~~~Glg~~~~~~~~~~~~~~~~~l 106 (122)
T cd02062 45 -------------YGAPVLIIVCADKDAARP-----SGPWAEADAGIAAQNILLAAHALGLGSCWIGGLDLVEEELRELL 106 (122)
T ss_pred -------------eCCCEEEEEEeccccccc-----cCccHHhHHHHHHHHHHHHHHHcCCCchhcCCcccchHHHHHHh
Confidence 134556666665433221 3456789999999999999999999999999999 99999999
Q ss_pred CCCCCCcceeeeccc
Q 006333 302 GLDIFPEFVIPSKPI 316 (650)
Q Consensus 302 gLd~~~E~v~~~~~i 316 (650)
||++. |.++.++++
T Consensus 107 ~l~~~-~~~~~~l~~ 120 (122)
T cd02062 107 GIPEG-YEILAVIAV 120 (122)
T ss_pred CcCCC-cEEEEEEEe
Confidence 99975 456666655
No 43
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=99.43 E-value=8.6e-13 Score=125.98 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=97.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|.+||+. .+.+||++|.+||+++|+... .+.. ++.- ..+.+....
T Consensus 11 R~f~~~~v~~e~l~~il~a----------------A~~APs~~n~Qpw~f~vv~~~--~~~~---l~~~--~~~~~~~~~ 67 (160)
T cd02135 11 KKLTLPAPDREQLEQILEA----------------AARAPDHGKLEPWRFIVIRGE--ARER---LAEL--LAEAAAREP 67 (160)
T ss_pred hhcCCCCCCHHHHHHHHHH----------------HHhCCCcCCccCeEEEEEech--HHHH---HHHH--HHHHHHhcc
Confidence 4577889999999999998 578999999999999888653 1110 1000 000000000
Q ss_pred cCCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHH
Q 006333 224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKL 300 (650)
Q Consensus 224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~l 300 (650)
...... ......+.++|++|+++++..+. + .........|+|.++||++|+|+++|||+||++++ +++.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~--~--~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~ 143 (160)
T cd02135 68 GAPEEQIEKAREKALRAPLVIAVVAKPQPH--P--KVPEWEQLLAAGAAIQNLLLAAHALGFGAVWRTGWAAYDPAVREA 143 (160)
T ss_pred CCCHHHHHHHHccccCCCEEEEEEEecCCC--C--CCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCcccCHHHHHH
Confidence 000000 00124567899999999886432 0 11123356799999999999999999999999875 57889999
Q ss_pred hCCCCCCcceeeeccc
Q 006333 301 MGLDIFPEFVIPSKPI 316 (650)
Q Consensus 301 LgLd~~~E~v~~~~~i 316 (650)
|||+.. +.++++++|
T Consensus 144 l~ip~~-~~~~~~i~l 158 (160)
T cd02135 144 LGLAEG-ERIVGFLYI 158 (160)
T ss_pred hCCCCC-CEEEEEEEe
Confidence 999975 456677766
No 44
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=99.42 E-value=5.2e-13 Score=131.59 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=100.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc--cccCCCCeee------EecCC
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI--ESLCDSPFVA------HYAPK 215 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v--~gL~~~pGvY------hY~p~ 215 (650)
|.+.+++|+.++|.+||+. .+.+||++|+|||+++|+...- +.+.. +. .|...
T Consensus 12 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~vvv~~~~~~~~l~~---~~~~~~~~~~~~~ 72 (193)
T cd02144 12 RKFSDEPVPREVIENCIRT----------------AGTAPSGANTQPWTFVVVSDPELKHRIRE---IAEEEERINYEGR 72 (193)
T ss_pred cCCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEeCCHHHHHHHHH---HHHHHhHHHHHHH
Confidence 4577889999999999998 5889999999999998886431 11110 00 00000
Q ss_pred -CCchhh-hccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC
Q 006333 216 -EHALEL-RAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG 293 (650)
Q Consensus 216 -~h~L~~-l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~ 293 (650)
.+.... +... .....+..+.++|++|+++++..+....+....-.+...|+|.++||++|+|+++|||+|++++|+
T Consensus 73 ~~~~~~~~~~~~--~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~ 150 (193)
T cd02144 73 MGKEWVWDLKPL--GTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHYYNEESVSIACGLLLAALQNAGLGTVTTTPLN 150 (193)
T ss_pred HHHHHHHHHhhh--hhhhccchhhcCCEEEEEEeeccccCCccccccCCcchhhHHHHHHHHHHHHHHCCCceeecCCcc
Confidence 000000 0000 000012346789999999887532211111111224567999999999999999999999999998
Q ss_pred H-HHHHHHhCCCCCCcceeeeccc
Q 006333 294 Y-KELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 294 d-~~l~~lLgLd~~~E~v~~~~~i 316 (650)
. +.++++|||+.. +.++++++|
T Consensus 151 ~~~~v~~~l~ip~~-~~~~~~i~l 173 (193)
T cd02144 151 MGPFLRRLLGRPAN-EKLLMLLPV 173 (193)
T ss_pred hhHHHHHHhCCCCC-CceEEEEEe
Confidence 7 999999999964 578888888
No 45
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.41 E-value=4.2e-13 Score=130.66 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=98.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+.+++++.++|..||+. .|.+||++|+|||++||+..++ +.+. .+|.+...... ...
T Consensus 12 R~f~~~~v~~e~l~~il~~----------------a~~aPs~~n~q~~~f~vv~~~~~~~l~---~~~~~~~~~~~-~~~ 71 (178)
T cd02136 12 RAFLPDPVPRETIEEILAA----------------AQRAPSGCNTQPWQVYVVTGEALDRLR---QLYGALGIARE-DKA 71 (178)
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HHhCccccCCCCEEEEEECcHHHHHHH---HHHHHcCCCcc-cHH
Confidence 4577889999999999998 5899999999999999987532 1222 12222111000 000
Q ss_pred ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHH
Q 006333 223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKL 300 (650)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~l 300 (650)
... .....+..+..++++|++++... .-.+.++|+|+++||++|+|+++|||+||+++|+ ++.++++
T Consensus 72 ~~~--~~~~~~~~~~~ap~~i~~~~~~~---------~~~~~~~~~g~a~~nl~Laa~~lGlgt~~~~~~~~~~~~~~~~ 140 (178)
T cd02136 72 GRA--RQALRNFRFFGAPVGLFFTIDRR---------LGPGSALDLGMFLQTIMLAARARGLDTCPQAALAKYPDIVREE 140 (178)
T ss_pred HHH--HHHhhcccccCCCEEEEEEecCC---------CCcchHHhHHHHHHHHHHHHHHcCCccccccccccCcHHHHHH
Confidence 000 00001123567888888876532 1125678999999999999999999999999986 6889999
Q ss_pred hCCCCCCcceeeeccc
Q 006333 301 MGLDIFPEFVIPSKPI 316 (650)
Q Consensus 301 LgLd~~~E~v~~~~~i 316 (650)
|||+.. +.++++++|
T Consensus 141 l~l~~~-~~~~~~l~i 155 (178)
T cd02136 141 LGIPDD-EMLVCGIAL 155 (178)
T ss_pred hCCCCC-ceEEEEEEe
Confidence 999975 567777788
No 46
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=99.39 E-value=4.6e-13 Score=132.79 Aligned_cols=151 Identities=13% Similarity=0.010 Sum_probs=102.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhh
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALEL 221 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~ 221 (650)
|.|.+++|+.++|..||+. .|.+||++|+|||+++|+... .+.|.+ .++.+. . ....
T Consensus 11 R~F~~~~V~~e~i~~ilea----------------A~~APS~~N~Qpw~fvVv~~~~~~~~l~~--~~~~~~--~-~~~~ 69 (196)
T cd02145 11 RHFFPDPVPEEVLERLLAA----------------AHHAPSVGLSQPWRFIRVRDPATRAAIKA--LFEEER--A-EAAE 69 (196)
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCHHHHHHHHH--HHHHHH--H-HHHh
Confidence 4577889999999999998 589999999999999888653 122221 010000 0 0000
Q ss_pred hccCCchhc---cccccCCCCcEEEEEeeechhHHHh-hhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecccCHHH
Q 006333 222 RAKIPSRFD---LFNNFFPKNSFLVGFSSIFWREAWK-YGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKE 296 (650)
Q Consensus 222 l~~~~~~~~---~~~~~~~~a~~~iv~ta~~~r~~~K-Yg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~ 296 (650)
....+.... .....+.++|.+++++....+...+ ++.+.++ +...|+|+++|||+|+|+++|||+|++++|+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~nl~LaA~~~Glgt~~~~~~~~~~ 149 (196)
T cd02145 70 AYPGERAAEYARLKLEGILEAPVNLAVFCDRDRAGGHVLGRATMPEMDLYSVVCAIQNLWLAARAEGLGVGWVSILDPEA 149 (196)
T ss_pred hccchhHHHHHHHHhhhhhcCCeEEEEEEecccccccCCCccCchhhhhhhHHHHHHHHHHHHHHcCCceEEecccChHH
Confidence 000000000 0112356889988888876543322 3333333 3467999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcceeeeccc
Q 006333 297 LKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 297 l~~lLgLd~~~E~v~~~~~i 316 (650)
+.++|||+.. +.++++++|
T Consensus 150 v~~~l~lp~~-~~~~~~l~l 168 (196)
T cd02145 150 LARLLGIPED-WEPVAYLCL 168 (196)
T ss_pred HHHHcCcCCC-cEEEEEEEE
Confidence 9999999964 667777788
No 47
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=99.36 E-value=8e-13 Score=132.13 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=99.1
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE-ecCCCCchhhhc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH-YAPKEHALELRA 223 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh-Y~p~~h~L~~l~ 223 (650)
.+.+++|+.++|.+||+. .+.+||++|++||+++|+... +.... +.. +.-.........
T Consensus 21 ~f~~~~i~~e~l~~il~a----------------A~~APS~~n~Qpw~fvvv~~~-e~~~~---l~~~~~~~~~~~~~~~ 80 (205)
T TIGR02476 21 HFRSDPVPEAVLERLLDA----------------AHHAPSVGFSQPWRFVRVESP-ATREA---VHALFTRANQAAAAIY 80 (205)
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCH-HHHHH---HHHHHHHHHHHHhhhc
Confidence 477899999999999998 589999999999998887643 11110 000 000000000000
Q ss_pred cCCchh---ccccccCCCCcEEEEEeeechhH-HHhhhchhh-hHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHH
Q 006333 224 KIPSRF---DLFNNFFPKNSFLVGFSSIFWRE-AWKYGERAF-RYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELK 298 (650)
Q Consensus 224 ~~~~~~---~~~~~~~~~a~~~iv~ta~~~r~-~~KYg~ray-R~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~ 298 (650)
...... ......+.++|++|+++.+..+. ...++.+.. .+...|+|+++|||+|+|+++|||+|++++|+.+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~aP~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~g~A~~nl~LaA~~~GlGs~~~~~~~~~~v~ 160 (205)
T TIGR02476 81 DGERASQYHRLKLEGIREAPVQLAVFCDDARGEGHGLGRHTMPEMLRYSVACAIQNLWLAARAEGLGVGWVSILDPDAVR 160 (205)
T ss_pred chhhHHHHHHhhhcchhcCCeEEEEEeeccccccccccccccchhhhccHHHHHHHHHHHHHHCCCcceeecccChHHHH
Confidence 000000 00112356899999988875331 111222222 2356799999999999999999999999999999999
Q ss_pred HHhCCCCCCcceeeeccc
Q 006333 299 KLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 299 ~lLgLd~~~E~v~~~~~i 316 (650)
++|||+.. +.++++++|
T Consensus 161 ~~L~lp~~-~~~~~~l~i 177 (205)
T TIGR02476 161 RLLGVPEG-WRLVAYLCL 177 (205)
T ss_pred HHhCcCCC-ceEEEEEEe
Confidence 99999954 667788888
No 48
>PRK10828 putative oxidoreductase; Provisional
Probab=99.35 E-value=4.6e-12 Score=124.46 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=95.0
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc-
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA- 223 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~- 223 (650)
.+.+++++.++|..||+. .+.+||++|.+||+++|+... .+.. + ...+....
T Consensus 15 ~f~~~~v~~e~i~~ilea----------------A~~APS~~N~Qpw~fvvv~~~--~~~~---l------~~~~~~~~~ 67 (183)
T PRK10828 15 RLAEPAPTGEQLQNILRA----------------GMRAPDHGSLQPWRFFVIEGE--GRER---F------SALLEQGAI 67 (183)
T ss_pred ccCCCCcCHHHHHHHHHH----------------HHhCcCcCCccceEEEEEccH--HHHH---H------HHHHHHHHH
Confidence 467889999999999998 689999999999999887542 2210 0 00000000
Q ss_pred cCC-chh--ccccccCCCCcEEEEEeeechhHHHhhhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecc--cCHHHH
Q 006333 224 KIP-SRF--DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEG--MGYKEL 297 (650)
Q Consensus 224 ~~~-~~~--~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~--f~d~~l 297 (650)
... ... ......+..||++|+++++... +.+... ....|+|.++||++|+|+++|||+||+++ ++++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~-----~~~~~~~~~~~d~~~a~~nl~LaA~a~GlGs~w~~~~~~~~~~~ 142 (183)
T PRK10828 68 AAGSDEKAIEKARNAPFRAPLIITVVAKCEE-----NHKVPRWEQEVSAGCAVMAMQMAAVAQGFNGIWRSGAWTESPVV 142 (183)
T ss_pred hcCCCHHHHHHHHhhcccCCEEEEEEEecCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCCccCHHH
Confidence 000 000 0011234579999988885321 111112 24679999999999999999999999965 677899
Q ss_pred HHHhCCCCCCcceeeeccc
Q 006333 298 KKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 298 ~~lLgLd~~~E~v~~~~~i 316 (650)
+++|||+.+ +.++++++|
T Consensus 143 ~~~L~ip~~-~~~~~~i~l 160 (183)
T PRK10828 143 REAFGCREQ-DKIVGFLYL 160 (183)
T ss_pred HHHcCCCCC-CEEEEEEEe
Confidence 999999964 578888888
No 49
>PRK11053 dihydropteridine reductase; Provisional
Probab=99.35 E-value=4.8e-12 Score=127.58 Aligned_cols=140 Identities=22% Similarity=0.176 Sum_probs=98.4
Q ss_pred CCCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+.+ .+|+.++|..||.. .|.+||++|++||+++||... +.+ +.+
T Consensus 14 R~f~~~~~v~~e~l~~ilea----------------a~~APS~~N~Qpw~fvvV~~~-e~~----------------~~l 60 (217)
T PRK11053 14 KAFDPSKKLPAEQIEQIKTL----------------LRFSPSSVNSQPWHFIVASTE-EGK----------------ARI 60 (217)
T ss_pred eccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCcCeEEEEecCH-HHH----------------HHH
Confidence 34664 68999999999998 689999999999999887652 221 122
Q ss_pred ccCCchh-ccccccCCCCcEEEEEeeechhH-H------------Hh----------------h------hc-hhhhHHH
Q 006333 223 AKIPSRF-DLFNNFFPKNSFLVGFSSIFWRE-A------------WK----------------Y------GE-RAFRYCN 265 (650)
Q Consensus 223 ~~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~-~------------~K----------------Y------g~-rayR~~~ 265 (650)
...-... ...+..+.+++.+|+++++.... . .+ | +. ....+..
T Consensus 61 ~~~~~~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (217)
T PRK11053 61 AKAAAGNYAFNERKILDASHVVVFCAKTDMDDAYLELVLEQEDADGRFATEEAKAAQDKGRRFFADMHRKELKDLQHWME 140 (217)
T ss_pred HHHHhhhccccchhhcCCCEEEEEEecCCCCHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 2110000 00123567899999888752100 0 00 0 00 0112445
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 266 lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
.|+|.++|||+|+|+++|||+|+++||+.+.|.+.|||+.+.+.++.+++|
T Consensus 141 ~~~~ia~~~lmLaA~~~Glgs~~i~g~~~~~v~~~l~ip~~~~~~~~~i~l 191 (217)
T PRK11053 141 KQVYLALGNLLLGAAALGIDATPIEGFDAAILDAEFGLREKGLTSSVVVPL 191 (217)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcCCcCHHHHHHHhCCCCcCcceEEEEEe
Confidence 589999999999999999999999999999999999999655567888888
No 50
>cd02143 NADH_nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.32 E-value=9.9e-12 Score=117.67 Aligned_cols=118 Identities=18% Similarity=0.093 Sum_probs=93.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|..|++. .+.+||++|++||+++++... ... |
T Consensus 9 R~F~~~~i~~~~l~~il~a----------------a~~aPs~~n~qp~~f~vv~~~---~~~--~--------------- 52 (147)
T cd02143 9 RHYRPEPVPRETIERLLDI----------------ARYAPTGSNSQPVHFTVVDDP---WEK--G--------------- 52 (147)
T ss_pred ecCCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH---HHc--C---------------
Confidence 4577889999999999998 578999999999997766432 000 0
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH-----HHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY-----KELK 298 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d-----~~l~ 298 (650)
.+..+.++|.+|+++++..+. ....|+|.++||++|+|+++|+|+||+++|+. +.++
T Consensus 53 --------~~~~~~~ap~~i~~~~~~~~~----------~~~~d~g~a~~~l~LaA~~lGlgs~~~~~~~~~~~~~~~~~ 114 (147)
T cd02143 53 --------IDPIFRGAPHLLLASAPRDFP----------TAQVDAIIALTYFELAAQALGLGTCWAGFFQAAAELYPPLR 114 (147)
T ss_pred --------cCceecCCCEEEEEEECCCCC----------CccchHHHHHHHHHHHHHHcCCCEehhhhHHHHhhhhHHHH
Confidence 012356889999888864321 34679999999999999999999999998874 8999
Q ss_pred HHhCCCCCCcceeeeccc
Q 006333 299 KLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 299 ~lLgLd~~~E~v~~~~~i 316 (650)
++|+|+.. +.++++++|
T Consensus 115 ~~l~lp~~-~~~~~~iai 131 (147)
T cd02143 115 DRLGLPEG-HKVGYAMMF 131 (147)
T ss_pred HHcCcCCC-cEEEEEEEE
Confidence 99999965 568888888
No 51
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=99.31 E-value=7.1e-12 Score=123.95 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=97.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhh
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALEL 221 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~ 221 (650)
|.+.+++|+.++|..||.. .+.+||++|++||+++|+... .+.|.. .+. +.....
T Consensus 10 R~f~~~~V~~e~l~~il~a----------------A~~APS~~n~Qpw~fvvv~~~e~~~~l~~---~~~----~~~~~~ 66 (194)
T TIGR03553 10 RRFSDDPVDPDAVRAAVAA----------------ALTAPAPHHTRPVRFVWVEDAERRTRLLD---AMA----DAWRAD 66 (194)
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCHHHHHHHHH---HHH----HHHHHh
Confidence 4577889999999999998 588999999999998877652 122211 000 000000
Q ss_pred hc--cCCchh--c--cccccCCCCcEEEEEeeechhHHHhhhc--h---hhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333 222 RA--KIPSRF--D--LFNNFFPKNSFLVGFSSIFWREAWKYGE--R---AFRYCNHDVGHAIAAVAMAAAELGWDVKILE 290 (650)
Q Consensus 222 l~--~~~~~~--~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~--r---ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~ 290 (650)
.. ...... . ..+..+.++|.+|+++..... ...+.+ + .......|+|.++||++|+|+++|||+||++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~ap~~iv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~a~qnl~LaA~~~Glgt~~~~ 145 (194)
T TIGR03553 67 LRADGLSADAIDRRVARGDILRDAPELVIPCLVPDG-AHSYPDERRTAAEHTMFTVAVGAAVQNLLVALAVEGLGSCWVG 145 (194)
T ss_pred hhhccCchHHHHHHhhhhhhHhcCCeEEEEEEcccc-cccCCcccccccchhhHHhHHHHHHHHHHHHHHHcCCCeEEec
Confidence 00 000000 0 011245688998888764221 111211 1 1123357999999999999999999999999
Q ss_pred c--cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 G--MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 ~--f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+ |+.+.|.++|||+.+ +.++++++|
T Consensus 146 ~~~~~~~~v~~~l~lp~~-~~~~~~i~i 172 (194)
T TIGR03553 146 STIFAADVVRAELDLPAD-WEPLGAVAV 172 (194)
T ss_pred CcccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence 8 889999999999964 567788888
No 52
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.18 E-value=7.5e-11 Score=116.67 Aligned_cols=146 Identities=15% Similarity=0.015 Sum_probs=90.4
Q ss_pred CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.+.+ .+++.++|..||..+ .|.+||++|++||++||+.+. .+.. + ..-....+.
T Consensus 13 ~f~~~~~V~~e~l~~ileaA---------------~~~APS~~N~QPW~f~Vv~~~--~~~~---~-----~~~~~~~~~ 67 (192)
T cd02140 13 ALGKNLPVSDDEIEEIVKEA---------------VKHSPSSFNSQSSRAVILFGE--EHEK---L-----WDIVKDTLR 67 (192)
T ss_pred ccCCCCCCCHHHHHHHHHHH---------------HHhCCCCCCCCCeEEEEEECh--HHHH---H-----HHHHHHHHH
Confidence 4665 589999999999971 278999999999999998864 1110 0 000000111
Q ss_pred cCCc-hh-c-cc--cccCCCCcEEEEEeeechhHH------HhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec--
Q 006333 224 KIPS-RF-D-LF--NNFFPKNSFLVGFSSIFWREA------WKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE-- 290 (650)
Q Consensus 224 ~~~~-~~-~-~~--~~~~~~a~~~iv~ta~~~r~~------~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~-- 290 (650)
.... .. . .. ......++.++++.+...+.. ..|......+..+|+|.++|||+|+|+++|||+|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~nl~LaA~~~GlGs~~~~~~ 147 (192)
T cd02140 68 AIVPAEAFAATKEKLDGFKAGYGTVLFFEDQAVVKGLQEKFPLYADNFPVWSEQSSGMAQIAVWTALAAEGIGANLQHYN 147 (192)
T ss_pred hcCChhhcccchhHHHHHHHhhceeeeeechHHHHHHHHHhHHHHhhCccchhhhhHHHHHHHHHHHHhCCCcccHHHhC
Confidence 1000 00 0 00 001234444455444422111 1122223345677999999999999999999999654
Q ss_pred ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 ~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
.+.++.++++||++. ++.++++++|
T Consensus 148 ~~~~~~v~~~l~ip~-~~~~v~~i~l 172 (192)
T cd02140 148 PLIDEEVAKKWNIPS-NWKLRAQLVF 172 (192)
T ss_pred ccCCHHHHHhcCCCc-cceEEEEeec
Confidence 234599999999995 4678888888
No 53
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=99.14 E-value=2.2e-10 Score=126.69 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=98.3
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeee-EecCCCCchhh
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVA-HYAPKEHALEL 221 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvY-hY~p~~h~L~~ 221 (650)
.|.+++++.++|.+||+. .+.+||++|+|||.++|+... .+.|.. -+. .+.. .+..
T Consensus 265 ~F~~~pVp~E~I~~ILeA----------------A~~APS~~N~QPWrFVVV~d~e~r~kL~~--~~~~~~~~---~l~~ 323 (448)
T PRK13294 265 EFSDDPVDPEAVRRAVAA----------------ALTAPAPHHTRPVRFVWLRSAAVRTRLLD--AMRDAWRA---DLRA 323 (448)
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCHHHHHHHHH--HHHHHHHH---hhhh
Confidence 467889999999999998 689999999999999988653 111210 000 0000 0000
Q ss_pred hccCCchh--c--cccccCCCCcEEEEEeeechhHHHhhhc--h---hhhHHHHHHHHHHHHHHHHHHHcCCceEEecc-
Q 006333 222 RAKIPSRF--D--LFNNFFPKNSFLVGFSSIFWREAWKYGE--R---AFRYCNHDVGHAIAAVAMAAAELGWDVKILEG- 291 (650)
Q Consensus 222 l~~~~~~~--~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~--r---ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~- 291 (650)
....... . ..+..+.++|++|+++...... ..|.+ + -..+...|+|.++|||+|+|+++||++||+++
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~AP~lIvv~~~~~~~-~~~~~~~~~~~e~~~~~~daG~AaqNL~LAA~alGLGScwig~~ 401 (448)
T PRK13294 324 -DGLSEESIARRVRRGDILYDAPELVVPFLVPDGA-HSYPDARRTAAERTMFTVAVGAAVQNLLVALAVEGLGSCWIGST 401 (448)
T ss_pred -ccccHHHHHHHhhhcchhhcCCeEEEEEEecccc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHCCCcEEEeccc
Confidence 0000000 0 0123467899988887653211 11211 1 11245689999999999999999999999987
Q ss_pred -cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 -MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 -f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+.+.++++|||+.+ +.++++++|
T Consensus 402 ~~d~~~Vre~LgLPe~-~~~v~~IaI 426 (448)
T PRK13294 402 IFAADVVRAVLDLPAD-WEPLGAVAI 426 (448)
T ss_pred ccChHHHHHHhCcCCC-cEEEEEEEE
Confidence 889999999999964 567888888
No 54
>COG0778 NfnB Nitroreductase [Energy production and conversion]
Probab=99.00 E-value=1.7e-09 Score=106.32 Aligned_cols=137 Identities=21% Similarity=0.265 Sum_probs=96.2
Q ss_pred CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.+. ++|++.++|..||+. .+.+||++|++||.++++....+.. ..+.
T Consensus 17 ~f~~~~pi~~e~l~~il~a----------------a~~aPs~~n~qpw~fi~v~~~~~~~----------------~~l~ 64 (207)
T COG0778 17 KFDSPKPIPEEDLEKILEA----------------ARLAPSAGNLQPWRFIVVRDEDELK----------------AALA 64 (207)
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCcCccCCcceEEEEEcCcHHHH----------------HHHH
Confidence 466 799999999999998 5889999999999988776542111 1111
Q ss_pred cCCchhccccccCCCCcEEEEEeeech-----------------------hHHHhhhch-hhhHHHHHHHHHHHHHHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFW-----------------------REAWKYGER-AFRYCNHDVGHAIAAVAMAA 279 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~-----------------------r~~~KYg~r-ayR~~~lDaG~~~q~l~LaA 279 (650)
+.... .+..+.+++..+++.++.. +..++|+.+ ..++.+.++++++||++|+|
T Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nl~Laa 141 (207)
T COG0778 65 ELAGG---GQAQLKEASALLAVLADLESLDKVAEGRAPDLGAAVFLLAERRKLLGYGRRAALEYALDAASIAAQNLLLAA 141 (207)
T ss_pred Hhhhh---hhhhcccCCeEEEEEeehhhhhhcccccccHHHHHHHhcccchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 10000 0123445555555555432 233344543 46778888888999999999
Q ss_pred HHcCCceEEecccCHHHHHHHhCCCCC---Ccceeeeccc
Q 006333 280 AELGWDVKILEGMGYKELKKLMGLDIF---PEFVIPSKPI 316 (650)
Q Consensus 280 ~alGl~~~~i~~f~d~~l~~lLgLd~~---~E~v~~~~~i 316 (650)
+++|+++|++++|+.+.+.+.++++.. .+.++.++++
T Consensus 142 ~~~Glg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 181 (207)
T COG0778 142 EALGLGSCWIGGFDAEDLKELLRELLGLPEEEKPVGLLAL 181 (207)
T ss_pred HHcCCCcccCccccHHHHHHHHhcccccCcceeEEEEEEe
Confidence 999999999999999999888887642 2667777777
No 55
>PRK07877 hypothetical protein; Provisional
Probab=98.77 E-value=5.2e-07 Score=105.17 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=45.8
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc-----------------------hHHHHhHhCCCCCCceEEEEEEcccc
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF-----------------------DDPVHEVLGLTGSKFQSLYHFTVGGP 631 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~-----------------------dd~v~e~LgL~~~~~~~ly~~avG~p 631 (650)
.-++.+|.+.|.+.|.|+++||..|++.-.+ .+.++++||++. +..+.+++=||++
T Consensus 624 ~d~lraGrAlqRvwL~AT~~GLA~~Pls~v~l~~r~~~~~~~ls~~~~~el~~lr~~l~~llg~~~-~~~pq~l~RlG~a 702 (722)
T PRK07877 624 TDYARGGSAMEAVWIAAQQLGLAVQPVSPVFLYARNRGELEGLSPEFADELGRLQKRFRELVGIGA-DEAEVLLFRLSHA 702 (722)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhCCccchhhhccccccccccccchhhhHHHHHHHHHHHhCCCC-CCceEEEEEcccC
Confidence 3479999999999999999999999995531 134578888875 3468888899986
Q ss_pred CC
Q 006333 632 VV 633 (650)
Q Consensus 632 ~~ 633 (650)
..
T Consensus 703 ~~ 704 (722)
T PRK07877 703 PP 704 (722)
T ss_pred CC
Confidence 55
No 56
>PRK14851 hypothetical protein; Provisional
Probab=98.35 E-value=4.3e-05 Score=89.09 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=42.2
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCeeeeCc---cc-h---------------------HHHHhHhCCCC-CCceEEEEEEc
Q 006333 575 RLFWETGVLGQVLYLEAHAVGISATGIGC---FF-D---------------------DPVHEVLGLTG-SKFQSLYHFTV 628 (650)
Q Consensus 575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~---f~-d---------------------d~v~e~LgL~~-~~~~~ly~~av 628 (650)
..++.+|.+.|.+.|+|+++||..|++.- |. . ....++++.++ .+...+++|=|
T Consensus 578 ~d~lraGrAlqRvwL~AT~~GLA~~Pls~~~l~~~r~~~~~~~~ls~~~~~~l~~l~~~~~~l~~~~~~~~~~~v~~~R~ 657 (679)
T PRK14851 578 RDFLLGGQALERIWLTLEHHGLQMQPMTAVTLFWLRWLLEGPSSFSEKHRKLLERIWQDYKGLFASVDFEKQGQVMLFRF 657 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhCcccHHHHHhhhhccCCcccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEEe
Confidence 45799999999999999999999999853 21 1 23556677752 24567788888
Q ss_pred ccc
Q 006333 629 GGP 631 (650)
Q Consensus 629 G~p 631 (650)
|+.
T Consensus 658 ~~a 660 (679)
T PRK14851 658 GYG 660 (679)
T ss_pred ecC
Confidence 864
No 57
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=97.59 E-value=0.00021 Score=71.07 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCC
Q 006333 577 FWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVV 633 (650)
Q Consensus 577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~ 633 (650)
+.++|.++|.|.|-|+.+|||+||+|.- +.. ...+.+++|++..
T Consensus 65 l~n~GY~gEqlvL~l~~lGLgTCWvg~~-----------~~~--dl~~vI~~Gyg~~ 108 (206)
T PF14512_consen 65 LENAGYYGEQLVLYLQSLGLGTCWVGRS-----------PNP--DLPCVIAFGYGKT 108 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEES-------------SST--T-S-EEEEE-BS-
T ss_pred HHhcCHHHHHHHHHHHHcCCcceeeccc-----------ccC--CceEEEEEeccCC
Confidence 5789999999999999999999999842 111 2457789998754
No 58
>PRK14852 hypothetical protein; Provisional
Probab=97.36 E-value=0.0073 Score=72.44 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=42.5
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCc---cc----------------------hHHHHhHhCCCCCCceEEEEEEccc
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGC---FF----------------------DDPVHEVLGLTGSKFQSLYHFTVGG 630 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~---f~----------------------dd~v~e~LgL~~~~~~~ly~~avG~ 630 (650)
-++.+|...|.+.|.|+.+||+-.||.. |. ...+.++++++. +...+++|=+|+
T Consensus 890 dy~rgG~a~ervWl~A~~lGLavqP~s~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~~R~~~ 968 (989)
T PRK14852 890 DIARAGMAWQRAWCALEHMGYAMQPLAALPLLHLRLAMGDPQTLDTAHQRLLEEAWTLLEQVLPHPK-GRLPVMMFRAGV 968 (989)
T ss_pred HHHHHhHHHHHHHHHHHhCCcccCccchHHHHHHhhhcCccccCCHHHHHHHHHHHHHHHHHcCCCC-CcceeEEEEeec
Confidence 3689999999999999999999999952 22 124667888886 446777777775
Q ss_pred c
Q 006333 631 P 631 (650)
Q Consensus 631 p 631 (650)
.
T Consensus 969 ~ 969 (989)
T PRK14852 969 A 969 (989)
T ss_pred C
Confidence 3
No 59
>PRK14851 hypothetical protein; Provisional
Probab=96.62 E-value=0.0093 Score=69.91 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=37.5
Q ss_pred CcHHHHHHhcCCCCCCCCCCC-----------CCHHHHHHHHHHhc--cCCCcchhhhhcccCCCccc
Q 006333 414 FTVREVVRKRRSAVDMDGVTA-----------IDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRV 468 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~-----------I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~ 468 (650)
..+.+.+..|+|.|.|.. .+ ++.+++..|++++. ||+. |.|||++
T Consensus 292 ~di~~~iL~r~s~r~~~~-~p~~~~~~~~~~~v~~~~i~~i~~aa~~APs~~---------N~Qpw~f 349 (679)
T PRK14851 292 LWYVQNVLIRNTDQARVR-EPEPPVSVAHFDSLPQGVGDYILQAGIQAPSGD---------NVQPWQF 349 (679)
T ss_pred HHHHHHHhcccCCCCCCC-CCCccccccccCCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE
Confidence 455566779999999986 78 99999999999986 8875 6799993
No 60
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=95.25 E-value=0.21 Score=48.12 Aligned_cols=165 Identities=13% Similarity=0.190 Sum_probs=98.5
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc---cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL---PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~---Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
+++.+.|.+|||.=.-.+.-+++.+++.+|++.+. ||+.| .|+-|. |+..+-+
T Consensus 4 ~~~~~ai~~RRTiYaL~k~lp~~~e~i~~~v~~avk~tPsaFN---------SQssR~----------ViL~gd~----- 59 (200)
T COG3560 4 MTFLNAIENRRTIYALKKNLPVSDEEIKEIVKEAVKHTPSAFN---------SQSSRV----------VILFGDE----- 59 (200)
T ss_pred hHHHHHHHhhhhHhhcCCCCCCcHHHHHHHHHHHHhcCCcccc---------cCCceE----------EEEeccc-----
Confidence 57889999999998887767899999999999886 88763 455552 3332200
Q ss_pred eeeecCCcc----hhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh
Q 006333 491 LYFLVRNED----HLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS 566 (650)
Q Consensus 491 lY~y~~~~~----~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~ 566 (650)
... ..+.|+..+.. +.+....+.+.+ ...+.-+|.+.-|-. ...
T Consensus 60 ------h~KlWdivk~~l~~ivp~---------------------~~f~~t~~ki~~----f~ag~GtVLFfeDq~-Vv~ 107 (200)
T COG3560 60 ------HDKLWDIVKDELRAIVPA---------------------EAFEATERKIDS----FKAGYGTVLFFEDQN-VVK 107 (200)
T ss_pred ------hHHHHHHHHHHHHHhccc---------------------ccccccccccch----hhhccceEEEEecch-HHH
Confidence 011 11123333221 111111112222 122333444444422 211
Q ss_pred cccc-c-cch-----HHHHHHhHHHHHHHHHHHHcCCCeeee--CccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 567 NKNV-W-MYP-----RLFWETGVLGQVLYLEAHAVGISATGI--GCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 567 ~yg~-~-~Yr-----~~~~eaG~i~Q~L~LaA~alGlg~~~I--g~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..-+ . .|- ..-.-.|++--+...+-+++|+|+.-. ..+-|+++.+..+||. .|..-..|.+|.+....
T Consensus 108 ~LQeqfplYadnFPvwseqtsgm~Q~~vWtALa~~GlGAsLQHYNplidaa~~k~wniP~-sW~lraQmpFG~~~a~~ 184 (200)
T COG3560 108 GLQEQFPLYADNFPVWSEQTSGMAQIAVWTALAALGLGASLQHYNPLIDAAVAKEWNIPE-SWKLRAQMPFGSIEAPA 184 (200)
T ss_pred HHHHHhHHHHhhCcchhhhcccHHHHHHHHHHHHcccccchhhcchhHHHHhhhhcCCCc-cceeeeecccCCCCCCC
Confidence 1100 0 111 123456777777888888999999765 3467899999999998 79999999999876554
No 61
>PRK07877 hypothetical protein; Provisional
Probab=95.19 E-value=0.099 Score=61.76 Aligned_cols=49 Identities=12% Similarity=-0.133 Sum_probs=36.4
Q ss_pred chHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333 573 YPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPV 632 (650)
Q Consensus 573 Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~ 632 (650)
+|.+++.+|++.|||.|+|.++|+++|+.- +.... +..++..+.+|+..
T Consensus 421 ~r~~~iS~GAAleNL~LAA~a~Gl~~~~~~----------~p~~~-~~~l~a~i~l~~~~ 469 (722)
T PRK07877 421 YRGSAVAVGAALFNARVAAAAHGLLGPVEF----------FPGDE-GSPLRATLRFGRGD 469 (722)
T ss_pred cchHHHHHHHHHHHHHHHHHHCCCCeeEEE----------CCCCC-CccceEEEeccCCC
Confidence 577889999999999999999999999942 22222 23456667777543
No 62
>PRK14852 hypothetical protein; Provisional
Probab=88.37 E-value=1.5 Score=53.21 Aligned_cols=43 Identities=14% Similarity=-0.068 Sum_probs=32.0
Q ss_pred eeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeee
Q 006333 558 VAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGI 601 (650)
Q Consensus 558 ~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~I 601 (650)
.+|.++.+..+ +-.+|.+++.||++..||-++|.++|+.+..-
T Consensus 647 ~~D~sR~lpv~-Dp~gR~l~IScGAALeNLrvAAaa~G~~~~V~ 689 (989)
T PRK14852 647 HLDRQADGSFF-DYRHVASLLACGAAVQNAVYASGSAGLDATLS 689 (989)
T ss_pred EecCccCCCCc-CccchHHHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 33444443332 33578999999999999999999999998543
No 63
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=83.45 E-value=1.3 Score=44.30 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEec
Q 006333 265 NHDVGHAIAAVAMAAAELGWDVKILE 290 (650)
Q Consensus 265 ~lDaG~~~q~l~LaA~alGl~~~~i~ 290 (650)
+.++|...|.+.|-|+++|||+||++
T Consensus 65 l~n~GY~gEqlvL~l~~lGLgTCWvg 90 (206)
T PF14512_consen 65 LENAGYYGEQLVLYLQSLGLGTCWVG 90 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEES
T ss_pred HHhcCHHHHHHHHHHHHcCCcceeec
Confidence 56899999999999999999999997
No 64
>KOG3936 consensus Nitroreductases [Energy production and conversion]
Probab=83.34 E-value=0.96 Score=38.27 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC 447 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a 447 (650)
+..|.+.+.+|||+|.|.. ..++.+.+..+|..+
T Consensus 65 SQ~FYEelk~RRScR~fSn-~dVPleVI~NlikTA 98 (100)
T KOG3936|consen 65 SQEFYEELKKRRSCRFFSN-EDVPLEVIDNLIKTA 98 (100)
T ss_pred HHHHHHHHHhhhhhhhhcc-ccCcHHHHHHHHHhc
Confidence 3568899999999999998 789999999988654
No 65
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=29.14 E-value=1.1e+02 Score=31.06 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhh
Q 006333 146 PPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALEL 221 (650)
Q Consensus 146 ~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~ 221 (650)
+...++|-.++++-+-...|+. -+++..+-+ .|.| ||||.++.+.+
T Consensus 32 ~~~~g~TGae~Ar~iL~~~gl~----------------------~V~Ve~~~G---~LtD-----HYdP~~k~vrL 77 (222)
T PF04298_consen 32 RSSSGMTGAEVARHILDRNGLS----------------------DVRVERVPG---ELTD-----HYDPRNKVVRL 77 (222)
T ss_pred CCCCCCCHHHHHHHHHHHCCCC----------------------CeeEEEeCC---CCCC-----CcCCCCCEEEe
Confidence 3456788888888776655544 333332211 2444 99999999854
Done!