Query 006333
Match_columns 650
No_of_seqs 433 out of 2435
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 22:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eo7_A Putative nitroreductase 100.0 2.7E-80 9.3E-85 695.2 26.9 491 67-632 8-511 (511)
2 3hj9_A Oxidoreductase; structu 99.9 1.3E-26 4.5E-31 232.8 17.7 183 103-316 24-211 (223)
3 3hoi_A FMN-dependent nitroredu 99.9 3.2E-26 1.1E-30 224.0 14.7 181 105-316 3-189 (193)
4 3hoi_A FMN-dependent nitroredu 99.9 1.1E-25 3.8E-30 220.2 16.5 167 412-632 15-193 (193)
5 3hj9_A Oxidoreductase; structu 99.9 5.1E-25 1.7E-29 221.3 17.2 170 412-636 38-219 (223)
6 3eo7_A Putative nitroreductase 99.9 3.4E-25 1.2E-29 248.4 16.7 174 135-316 325-507 (511)
7 3ge6_A Nitroreductase; structu 99.9 4.5E-21 1.5E-25 190.3 15.8 156 412-635 6-197 (212)
8 3gbh_A NAD(P)H-flavin oxidored 99.8 6.9E-21 2.4E-25 189.2 15.2 156 413-635 8-198 (213)
9 4dn2_A Nitroreductase; structu 99.8 1.4E-20 4.8E-25 186.8 16.5 167 411-635 20-188 (208)
10 3g14_A Nitroreductase family p 99.8 4.8E-21 1.6E-25 187.9 12.7 151 414-631 2-154 (193)
11 3ge5_A Putative NAD(P)H:FMN ox 99.8 9.7E-21 3.3E-25 186.8 14.7 150 414-636 25-179 (198)
12 3gag_A Putative NADH dehydroge 99.8 8.7E-21 3E-25 187.4 13.8 154 414-635 4-190 (206)
13 3n2s_A NADPH-dependent nitro/f 99.8 1.6E-20 5.5E-25 191.7 15.3 153 414-635 2-170 (249)
14 3eo8_A BLUB-like flavoprotein; 99.8 3.2E-20 1.1E-24 184.7 16.6 180 414-635 2-203 (219)
15 3e39_A Putative nitroreductase 99.8 2.5E-20 8.7E-25 180.2 14.7 146 413-632 5-155 (178)
16 3m5k_A Putative NADH dehydroge 99.8 3.4E-20 1.1E-24 178.5 15.4 147 413-636 5-157 (172)
17 2fre_A NAD(P)H-flavin oxidored 99.8 1.5E-20 5.1E-25 185.3 13.2 157 413-635 10-168 (200)
18 3of4_A Nitroreductase; structu 99.8 7.1E-21 2.4E-25 189.1 10.8 154 414-635 2-190 (209)
19 3kwk_A Putative NADH dehydroge 99.8 3.9E-20 1.3E-24 178.6 15.5 147 412-636 8-160 (175)
20 1bkj_A NADPH-flavin oxidoreduc 99.8 4.5E-20 1.5E-24 187.3 15.6 153 414-635 2-164 (240)
21 3h4o_A Nitroreductase family p 99.8 5E-20 1.7E-24 180.7 15.3 149 412-634 18-168 (191)
22 3eof_A Putative oxidoreductase 99.8 4.7E-20 1.6E-24 188.1 15.6 152 415-635 1-166 (248)
23 1f5v_A Oxygen-insensitive NADP 99.8 4.2E-20 1.4E-24 187.5 14.7 153 414-635 2-164 (240)
24 3pxv_A Nitroreductase; flavopr 99.8 1.4E-19 4.9E-24 176.3 17.8 161 414-634 4-174 (189)
25 1nox_A NADH oxidase; flavoenzy 99.8 4.5E-20 1.6E-24 181.6 14.2 154 413-635 7-190 (205)
26 1zch_A Hypothetical oxidoreduc 99.8 3.7E-20 1.3E-24 189.7 14.0 153 414-635 2-170 (255)
27 2b67_A COG0778: nitroreductase 99.8 6.7E-20 2.3E-24 180.4 15.1 152 414-634 4-188 (204)
28 4eo3_A Bacterioferritin comigr 99.8 3.9E-20 1.3E-24 195.8 14.1 155 413-637 141-297 (322)
29 3e10_A Putative NADH oxidase; 99.8 8.1E-20 2.8E-24 174.9 14.9 144 418-636 3-152 (168)
30 1vfr_A NAD(P)H\:FMN oxidoreduc 99.8 7.8E-20 2.7E-24 181.5 14.8 156 414-632 3-195 (218)
31 3gfa_A Putative nitroreductase 99.8 2.4E-19 8.1E-24 175.7 15.2 174 415-635 2-183 (198)
32 3qdl_A Oxygen-insensitive NADP 99.8 6.6E-20 2.3E-24 182.0 10.8 152 415-635 8-195 (210)
33 3k6h_A Nitroreductase family p 99.8 9.1E-19 3.1E-23 172.1 18.0 165 414-635 9-179 (197)
34 2hay_A Putative NAD(P)H-flavin 99.8 1.7E-19 5.9E-24 180.1 13.0 154 414-635 10-207 (224)
35 2h0u_A NADPH-flavin oxidoreduc 99.8 2.1E-19 7E-24 178.5 13.4 155 414-635 4-201 (217)
36 3ek3_A Nitroreductase; YP_2117 99.8 9E-19 3.1E-23 170.8 17.2 160 414-634 5-173 (190)
37 3bem_A Putative NAD(P)H nitror 99.8 3.4E-19 1.2E-23 177.7 14.4 151 414-632 14-198 (218)
38 2isk_A BLUB; oxidoreductase, f 99.8 6.2E-19 2.1E-23 177.1 16.4 174 414-635 24-202 (230)
39 3gr3_A Nitroreductase; structu 99.8 1.7E-18 5.9E-23 174.1 19.2 177 413-637 6-209 (230)
40 3bm1_A Protein YDJA, nitroredu 99.8 6.6E-19 2.3E-23 170.0 15.5 163 414-635 1-167 (183)
41 1icr_A Oxygen-insensitive NAD( 99.8 2.4E-19 8.3E-24 177.7 11.6 157 414-633 1-196 (217)
42 2i7h_A Nitroreductase-like fam 99.8 1.3E-18 4.5E-23 169.2 15.1 162 413-635 7-172 (189)
43 2r01_A Nitroreductase family p 99.8 2.6E-18 9E-23 170.6 17.0 158 413-640 12-173 (210)
44 3gb5_A IYD-1, iodotyrosine deh 99.8 2.4E-18 8.1E-23 176.4 16.4 177 413-636 54-237 (259)
45 2ifa_A Hypothetical protein SM 99.8 1.4E-18 4.9E-23 171.4 13.3 166 414-635 2-183 (208)
46 1ywq_A Nitroreductase family p 99.7 1.5E-17 5.3E-22 162.6 16.2 169 413-635 5-185 (200)
47 2wqf_A Copper induced nitrored 99.7 1.1E-17 3.8E-22 163.7 14.8 169 415-635 2-186 (202)
48 2wzv_A NFNB protein; nitroredu 99.7 5.5E-17 1.9E-21 162.8 16.9 173 413-636 16-216 (235)
49 2ymv_A ACG nitroreductase; oxi 99.7 8.9E-16 3E-20 162.7 24.3 74 548-634 230-308 (330)
50 2fre_A NAD(P)H-flavin oxidored 99.6 4.8E-16 1.6E-20 152.9 10.0 136 145-316 25-161 (200)
51 3ge5_A Putative NAD(P)H:FMN ox 99.6 2.2E-15 7.7E-20 148.3 10.9 131 144-316 41-171 (198)
52 3g14_A Nitroreductase family p 99.6 9.2E-16 3.2E-20 150.2 8.0 135 145-316 16-151 (193)
53 3ge6_A Nitroreductase; structu 99.6 4.5E-15 1.5E-19 146.9 11.4 145 136-316 9-190 (212)
54 4dn2_A Nitroreductase; structu 99.6 2.2E-15 7.7E-20 149.2 8.9 154 136-316 24-181 (208)
55 3gfa_A Putative nitroreductase 99.6 1.2E-15 4.1E-20 149.2 6.5 151 144-316 14-176 (198)
56 3e39_A Putative nitroreductase 99.6 7.8E-15 2.7E-19 141.6 11.8 139 136-316 7-151 (178)
57 3gbh_A NAD(P)H-flavin oxidored 99.6 5.2E-15 1.8E-19 146.7 10.7 143 136-316 10-191 (213)
58 3h4o_A Nitroreductase family p 99.6 8.6E-15 2.9E-19 143.3 11.5 139 135-316 20-162 (191)
59 2isk_A BLUB; oxidoreductase, f 99.6 6.4E-15 2.2E-19 147.8 10.7 150 145-316 39-195 (230)
60 3eof_A Putative oxidoreductase 99.6 2E-14 7E-19 146.4 13.8 135 144-316 13-159 (248)
61 2b67_A COG0778: nitroreductase 99.6 1.6E-14 5.3E-19 141.9 12.4 134 145-316 18-182 (204)
62 3n2s_A NADPH-dependent nitro/f 99.5 1.6E-14 5.3E-19 147.3 12.1 135 144-316 15-163 (249)
63 3e10_A Putative NADH oxidase; 99.5 2.6E-14 8.8E-19 136.5 12.6 129 144-316 12-144 (168)
64 3qdl_A Oxygen-insensitive NADP 99.5 1E-14 3.5E-19 144.5 9.3 134 144-316 20-188 (210)
65 1zch_A Hypothetical oxidoreduc 99.5 1.6E-14 5.4E-19 147.7 10.8 134 145-316 16-163 (255)
66 3gag_A Putative NADH dehydroge 99.5 2E-14 6.8E-19 141.6 10.7 134 145-316 18-183 (206)
67 1f5v_A Oxygen-insensitive NADP 99.5 2.1E-14 7.2E-19 145.5 10.6 135 144-316 15-157 (240)
68 1bkj_A NADPH-flavin oxidoreduc 99.5 2.2E-14 7.6E-19 145.3 10.5 134 145-316 16-157 (240)
69 1nox_A NADH oxidase; flavoenzy 99.5 3.4E-14 1.2E-18 139.4 11.5 142 137-316 10-183 (205)
70 2h0u_A NADPH-flavin oxidoreduc 99.5 4.9E-14 1.7E-18 139.6 12.6 137 144-316 17-194 (217)
71 4eo3_A Bacterioferritin comigr 99.5 3E-14 1E-18 150.6 11.1 133 145-316 156-288 (322)
72 3bem_A Putative NAD(P)H nitror 99.5 4.9E-14 1.7E-18 140.2 12.0 134 145-316 28-194 (218)
73 3eo8_A BLUB-like flavoprotein; 99.5 2.6E-14 9E-19 141.9 9.8 154 145-316 16-196 (219)
74 3kwk_A Putative NADH dehydroge 99.5 4.2E-14 1.4E-18 136.2 11.0 134 136-316 11-152 (175)
75 3m5k_A Putative NADH dehydroge 99.5 4.5E-14 1.5E-18 135.5 10.7 135 136-316 7-149 (172)
76 1vfr_A NAD(P)H\:FMN oxidoreduc 99.5 2.8E-14 9.6E-19 141.3 9.5 139 145-316 17-191 (218)
77 2r01_A Nitroreductase family p 99.5 6.8E-14 2.3E-18 138.8 11.2 141 137-316 15-161 (210)
78 3of4_A Nitroreductase; structu 99.5 1.9E-14 6.7E-19 142.6 7.2 136 144-316 15-183 (209)
79 2hay_A Putative NAD(P)H-flavin 99.5 4.7E-14 1.6E-18 140.6 10.0 136 145-316 24-200 (224)
80 3pxv_A Nitroreductase; flavopr 99.5 1.6E-13 5.6E-18 133.3 12.8 138 145-316 18-168 (189)
81 3bm1_A Protein YDJA, nitroredu 99.4 1.5E-13 5E-18 132.4 9.1 142 145-316 15-160 (183)
82 3k6h_A Nitroreductase family p 99.4 3.9E-13 1.3E-17 131.8 11.9 151 137-316 11-172 (197)
83 2i7h_A Nitroreductase-like fam 99.4 3.2E-13 1.1E-17 131.1 9.9 149 137-316 10-165 (189)
84 1icr_A Oxygen-insensitive NAD( 99.4 1.5E-13 5.1E-18 135.9 7.5 140 144-316 14-191 (217)
85 3ek3_A Nitroreductase; YP_2117 99.4 9.5E-13 3.2E-17 128.0 12.9 143 137-316 7-167 (190)
86 3gb5_A IYD-1, iodotyrosine deh 99.4 3.8E-13 1.3E-17 137.8 9.3 159 136-316 56-229 (259)
87 3gr3_A Nitroreductase; structu 99.4 5.4E-13 1.8E-17 133.8 9.5 154 137-316 9-200 (230)
88 2wqf_A Copper induced nitrored 99.4 1.2E-12 3.9E-17 127.8 11.2 148 145-316 15-179 (202)
89 1vkw_A Putative nitroreductase 99.4 1.4E-12 4.7E-17 130.3 11.9 86 135-291 13-103 (218)
90 2ifa_A Hypothetical protein SM 99.4 9.6E-13 3.3E-17 129.5 9.7 145 145-316 16-176 (208)
91 2wzv_A NFNB protein; nitroredu 99.3 2.6E-12 8.8E-17 128.6 10.1 151 137-316 19-208 (235)
92 1ywq_A Nitroreductase family p 99.3 6.3E-12 2.2E-16 122.5 10.1 155 137-316 8-178 (200)
93 1vkw_A Putative nitroreductase 99.2 4.2E-11 1.4E-15 119.5 10.5 109 413-634 12-121 (218)
94 2ymv_A ACG nitroreductase; oxi 97.3 0.00033 1.1E-08 73.8 7.7 68 236-316 230-302 (330)
No 1
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}
Probab=100.00 E-value=2.7e-80 Score=695.24 Aligned_cols=491 Identities=22% Similarity=0.324 Sum_probs=387.8
Q ss_pred HHHHHHHHHhcCCcccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccCCC
Q 006333 67 SHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLP 146 (650)
Q Consensus 67 ~~~~~yH~~tkh~~~~~~~~~~~lDw~~qP~pfk~y~~~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (650)
+.+.+||++|||++.+|+++++.|||++||.|||.|+++++++||.+.... ...+.+
T Consensus 8 ~~~~~yh~~tk~~~~~~~~~~~~ldw~~qP~pfk~y~~~~~~~l~~~~~~~-----------------------~~~~~~ 64 (511)
T 3eo7_A 8 SIAQHYHERTKYDPETIASKSQRLDWAKQPVPFKEYKIGSAIDLKPYLQET-----------------------PEVFVN 64 (511)
T ss_dssp CHHHHHHHHTCCCTTTTTTC--CCCGGGCCCSSCCCSSSEEEECGGGSSCC-----------------------C-----
T ss_pred HHHHHHHHHccCChhhcCCCCCCCCcccCCCccccCCCCCccCCCCcchhc-----------------------ccccCC
Confidence 478899999999999999999999999999999999999999998654310 012245
Q ss_pred CCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCC
Q 006333 147 PPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIP 226 (650)
Q Consensus 147 ~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~ 226 (650)
.++++++++|++|||+++|+++++..++..|.+|++|||||+||+|+||++++|+||+. |+|||+|.+|+|+++...+
T Consensus 65 ~~~~l~l~~Ls~lL~~~~gi~~~~~~~~~~~~~R~aPSagnl~P~e~yvv~~~v~~l~~--GiY~Y~p~~h~L~~v~~~~ 142 (511)
T 3eo7_A 65 DTNGQWWQRLSRLLFRSYGLTARMPSMGNTVYLRAAPSAGGLYPAEVYVVSRGTPLLSP--GLYNYQCRTHSLIHYWESD 142 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEETTEEEEEESSCCGGGCCCEEEEEEECCCSSSCS--EEEEEETTTTEEEEEECSC
T ss_pred CCCCCCHHHHHHHHHHhhCCceeccCCCCcceeccccCCcccCceEEEEEECCCCCCCC--EEEEEECCCCEEEEEeccc
Confidence 67889999999999999999999887777888999999999999999999999999995 9999999999999987655
Q ss_pred chhc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh
Q 006333 227 SRFD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM 301 (650)
Q Consensus 227 ~~~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL 301 (650)
.... +. +.++.+|+++|+++++++|+.|||++++||++++|+||++||++|+|+++||++|++++|+++.|+++|
T Consensus 143 ~~~~L~~a~~~q~~~~~Ap~~iv~~a~~~r~~~ky~~~~~~~~~~D~G~a~qnl~LaA~~lGlg~~~ig~f~~~~v~~~L 222 (511)
T 3eo7_A 143 VWQSLQEACFWHPALESTQLAIIVTAVFYRSAWRYEDRAYRRICLDTGHLLGNIELSAAITDYRPHLIGGFIDEAVNDLL 222 (511)
T ss_dssp CHHHHHHHTTTCHHHHHCSEEEEEEEEHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCSCHHHHHHHH
T ss_pred HHHHHHHHhcCCccccCCCEEEEEEEEehHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEECeeCHHHHHHHh
Confidence 4321 22 346779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeccccCCCCccccCCCcceeEeecCCCCCCCcchhHHHHHHHHhhhccccCCCCCCCccc---ccchhh
Q 006333 302 GLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEH---FCWDII 378 (650)
Q Consensus 302 gLd~~~E~v~~~~~i~~~~~~~e~e~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~w~g~~n~ls~~~---~~w~~i 378 (650)
|||++.|.++++++|+ ..++.+.+.|++ ....|+.. .++|+.+. ......|.+++|.+++++ ..|+.+
T Consensus 223 ~L~~~~~~~~~~~~lG-~~~~~~~~~~~~-~~~~ps~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
T 3eo7_A 223 YIDPLQEGAIAVLPLA-DLLDIQQNISPG-CTALPSAT---ETNYPQVP----DGELLKYFHHHTQISASITGKLNLPTV 293 (511)
T ss_dssp TCCTTTEEEEEEEEEE-ETTSGGGCCCCC-CCCCCCCC---CCCCCCCC----TTTHHHHHHHTSCCCCCSCC-------
T ss_pred CcCCccceeEEEEEec-CCcccccCCCcc-cccCCCcc---cccccccc----cchhhhhcccchhcccccccccccccc
Confidence 9998889999999994 444434344442 23334322 34454432 223445888899999877 457766
Q ss_pred hhHHHHhcCCcccCCCCccCCCCCCCc--CCCC--CCCCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc-cCCCc
Q 006333 379 YSTAEVVKKPLTIRNAFSVDPFSSSGV--CSES--SYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL-PSGSR 453 (650)
Q Consensus 379 ~~~~~a~~~p~~~~~~~~~~p~~~~~~--~~~~--~~~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~-Ps~~~ 453 (650)
...... +++. ..|++.... ++.. ....+++.++|++|||+|+|++ ++|+.++|.+||++++ |+.++
T Consensus 294 ~~~~~~-------~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~i~~RRSvR~F~~-~~I~~e~L~~lL~aa~~~~~~~ 364 (511)
T 3eo7_A 294 IQEKSL-------EDKY-NFPFCLKISTVSAPIYWGENLSDLEITMHKRRSTRAYNG-EELTFDELKALLDFTYQPQNYI 364 (511)
T ss_dssp -----C-------CCSC-CCTTSCEEECCCCCCCCCGGGHHHHHHHHHCCCCSCBCC-CCEEHHHHHHHHHHHHCGGGGG
T ss_pred cccccc-------cccc-ccccccccccCCCCCCCCcCcccHHHHHHhCCCccccCC-CCCCHHHHHHHHHHhcCCcccc
Confidence 543211 1111 112211100 1111 1246789999999999999998 7999999999999997 44321
Q ss_pred chhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc
Q 006333 454 SREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD 533 (650)
Q Consensus 454 ~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd 533 (650)
.++. ...|+... ...+++||+|++|+||++|+|+|++..+ .|..+..++
T Consensus 365 ---~~~~-r~aPSagn--~qp~~~yvvv~~v~gL~~G~Y~y~~~~h-------------------------~L~~i~~~~ 413 (511)
T 3eo7_A 365 ---DQSL-DNSPDYFD--LNLIETFIAVCGVQGLEAGCYYYAPKAQ-------------------------ELRQIRFKN 413 (511)
T ss_dssp ---GGTC-CSSCCCSC--GGGCEEEEEESSEETSCSEEEEEETTTT-------------------------EEEEEEESC
T ss_pred ---ccCC-ccCCCCCC--cCcEEEEEEEeccCCCCCeeEEEcCCCC-------------------------EEEEecCcc
Confidence 1111 12333211 2357789999999999999999998754 466788899
Q ss_pred HHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh
Q 006333 534 CQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL 613 (650)
Q Consensus 534 ~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L 613 (650)
+++.+..++++|.++.+|+++|++++++++...+||.++|+.+++|+|+++|+|+|+|+++|||+||||+|++++|+++|
T Consensus 414 ~~~~l~~~~~~q~~~~~Ap~~iv~~ad~~~~~~~yg~~~~~~~~~dag~a~q~l~LaA~~lGlgs~~ig~~~~~~v~~~L 493 (511)
T 3eo7_A 414 FRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLNLGVSGIGGFFDDQVNEVL 493 (511)
T ss_dssp CHHHHHHHTTTCHHHHHCSEEEEEEECHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCccccCCCEEEEEEEECchhhhhhchhhHHHHHHHHHHHHHHHHHHHHHCCCCeEEEcccCHHHHHHHh
Confidence 99989999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEccccC
Q 006333 614 GLTGSKFQSLYHFTVGGPV 632 (650)
Q Consensus 614 gL~~~~~~~ly~~avG~p~ 632 (650)
||++ ++.++++++||+|.
T Consensus 494 ~lp~-~~~~~~~i~iGyp~ 511 (511)
T 3eo7_A 494 GIPN-DEAVIYITTLGRPR 511 (511)
T ss_dssp TCCT-TCEEEEEEEEECBC
T ss_pred CcCC-CceEEEEEEeeccC
Confidence 9996 67999999999984
No 2
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}
Probab=99.94 E-value=1.3e-26 Score=232.85 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=152.4
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccc
Q 006333 103 ISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWS 178 (650)
Q Consensus 103 ~~~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~ 178 (650)
...+.|+||.+... ....+.+.+.+| .+.+++|+.++|++||++++|++... ..
T Consensus 24 ~~~~~i~Lp~p~~~----------------~~~~~~~~i~~RrS~R~f~~~~v~~e~L~~lL~~~~g~~~~~------~a 81 (223)
T 3hj9_A 24 TSERVITLPEPDRT----------------SGMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSL------GG 81 (223)
T ss_dssp CCCSEEECCCCCCS----------------CSSBHHHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHCEEETG------GG
T ss_pred CCCCeeECCCCCCC----------------CCcCHHHHHHhcCCccccCCCCCCHHHHHHHHHHhhCCCccc------cC
Confidence 35578999987642 234566666554 46789999999999999999998632 23
Q ss_pred ccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCCchhc-cccccCCCCcEEEEEeeechhHHHhhh
Q 006333 179 LRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFD-LFNNFFPKNSFLVGFSSIFWREAWKYG 257 (650)
Q Consensus 179 ~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~~~~~-~~~~~~~~a~~~iv~ta~~~r~~~KYg 257 (650)
.|.+||+||+|||++||+.. +|+|||++..|.|..+...+.... ..+.++.+|+++|+++++.++..|||+
T Consensus 82 ar~aPSa~n~qp~~~~vv~~--------~~~y~y~~~~~~L~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~y~ 153 (223)
T 3hj9_A 82 GRTAPSPYGETVIDVYVALP--------AGLYRYDPVHHCLELKRAADLRSMTGYQDFVGMAPLDLVFVANHGRMQEMPP 153 (223)
T ss_dssp EESSCCGGGCCCEEEEEEET--------TEEEEEETTTTEEEEEESEECTTCSSEECCCCCCSEEEEEEEEGGGCTTSCG
T ss_pred ceecCCCCCccceEEEEEeC--------CeEEEEcCCCCEEEEccccCHHHHhcCCchhccCCEEEEEEEEhhHHHHHHH
Confidence 69999999999999999843 399999999999976543221111 124567899999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 258 ERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 258 ~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+++|+++++|+|+++||++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus 154 ~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~v~~~L~l~~-~~~~~~~i~i 211 (223)
T 3hj9_A 154 KLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNE-DEEPILSQTI 211 (223)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeeeCHHHHHHHcCCCC-CceEEEEEEc
Confidence 999999999999999999999999999999999999999999999997 4678888888
No 3
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Probab=99.93 E-value=3.2e-26 Score=224.03 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=151.3
Q ss_pred CCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccccc
Q 006333 105 APLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR 180 (650)
Q Consensus 105 ~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R 180 (650)
...|.||.+... ....+.+.+..| .+.+++|+.++|.+||+.++|++... ...|
T Consensus 3 ~~~i~Lp~p~~~----------------~~~~~~~~i~~RrS~R~f~~~~v~~e~l~~il~~a~g~~~~~------~~~~ 60 (193)
T 3hoi_A 3 ERTIQLPKPDMN----------------RAGLLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSS------EGKR 60 (193)
T ss_dssp CSEEECCCCCTT----------------CSCCHHHHHHHCCCCCCCCSSCCCHHHHHHHHHHHHCEEETT------TTEE
T ss_pred CceeeCCCCCCC----------------CCCCHHHHHhhcCCccccCCCCCCHHHHHHHHHHhcCCCccc------CCcc
Confidence 367899987642 234566666554 46789999999999999999998642 1259
Q ss_pred ccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCCchhc--cccccCCCCcEEEEEeeechhHHHhhhc
Q 006333 181 VNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFD--LFNNFFPKNSFLVGFSSIFWREAWKYGE 258 (650)
Q Consensus 181 ~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~~~~~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~ 258 (650)
.+||+||+|||++||+.. +|+|||+|..|.|..+...+.... ..+.++.+||++|+++++.++..+||++
T Consensus 61 ~aPS~~n~qp~~~~vv~~--------~~~y~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~ap~~iv~~~~~~~~~~~~~~ 132 (193)
T 3hoi_A 61 TAPSAMNRQDIDIYVVLP--------QGTYLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSN 132 (193)
T ss_dssp SSCCGGGCCCEEEEEEET--------TEEEEEETTTTEEEEEEESCCHHHHHTTCGGGGGSSEEEEEEEEGGGTSCTTCH
T ss_pred cCCCCCCcCceEEEEEcC--------CEeEEEccccCEEEEccCcchHHHHhcCchhHhCCCEEEEEEEEhHHhhhhhhH
Confidence 999999999999999854 399999999999988765433211 1235678999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 259 RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 259 rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
++|+++++|+|+++||++|+|+++|||+|++++|+++.++++|||+.. +.++++++|
T Consensus 133 ~~~~~~~~d~g~a~qnl~LaA~~lGlg~~~~~~~~~~~v~~~l~l~~~-~~~~~~i~i 189 (193)
T 3hoi_A 133 HVQLMGAMDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKDT-QMPMMNHPV 189 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTEEECCBCCCCHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecHHHHHHHcCCCCC-ceEEEEEEc
Confidence 999999999999999999999999999999999999999999999975 567777777
No 4
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Probab=99.93 E-value=1.1e-25 Score=220.16 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=142.6
Q ss_pred CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh----------c--cCCCcchhhhhcccCCCcccccccceEEEEE
Q 006333 412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC----------L--PSGSRSREKQKRQLALPYRVLSWDAEVHAAL 479 (650)
Q Consensus 412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a----------~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v 479 (650)
..+++.++|++|||+|+|++ ++|+.++|.+||+++ . ||+. +.|||++ +
T Consensus 15 ~~~~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~~a~g~~~~~~~~~~aPS~~---------n~qp~~~----------~ 74 (193)
T 3hoi_A 15 RAGLLMKALSERHSTREYAS-KALSNTDLSDLLWAANGINRSSEGKRTAPSAM---------NRQDIDI----------Y 74 (193)
T ss_dssp CSCCHHHHHHHCCCCCCCCS-SCCCHHHHHHHHHHHHCEEETTTTEESSCCGG---------GCCCEEE----------E
T ss_pred CCCCHHHHHhhcCCccccCC-CCCCHHHHHHHHHHhcCCCcccCCcccCCCCC---------CcCceEE----------E
Confidence 35899999999999999997 899999999999998 6 7754 5689883 3
Q ss_pred EEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEee
Q 006333 480 FIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVA 559 (650)
Q Consensus 480 ~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a 559 (650)
+| ..+|+|+|++..+. |..+..++++.. ++.+|.++.+|+++|++++
T Consensus 75 vv-----~~~~~y~y~~~~~~-------------------------l~~~~~~~~~~~---~~~~~~~~~~ap~~iv~~~ 121 (193)
T 3hoi_A 75 VV-----LPQGTYLYDAKGHK-------------------------LNLISEGDHRSA---VAGGQAFVNNAPVSLVLVS 121 (193)
T ss_dssp EE-----ETTEEEEEETTTTE-------------------------EEEEEESCCHHH---HHTTCGGGGGSSEEEEEEE
T ss_pred EE-----cCCEeEEEccccCE-------------------------EEEccCcchHHH---HhcCchhHhCCCEEEEEEE
Confidence 33 36899999976543 223445555432 2457889999999999999
Q ss_pred ecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333 560 HFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPV 632 (650)
Q Consensus 560 ~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~ 632 (650)
+.++...+||+++|++.++|+|+++|||+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGlg~~~~~~~~~~~v~~~l~l~~-~~~~~~~i~iGyp~ 193 (193)
T 3hoi_A 122 DLSKLGDAKSNHVQLMGAMDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKD-TQMPMMNHPVGYFK 193 (193)
T ss_dssp EGGGTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCBCCCCHHHHHHHHTCCT-TEEEEEEEEEEECC
T ss_pred EhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecHHHHHHHcCCCC-CceEEEEEEccCCC
Confidence 9998888899999999999999999999999999999999999999999999999998 67899999999984
No 5
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}
Probab=99.92 E-value=5.1e-25 Score=221.29 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=141.3
Q ss_pred CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHH----------Hhc--cCCCcchhhhhcccCCCcccccccceEEEEE
Q 006333 412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIML----------HCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAAL 479 (650)
Q Consensus 412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~----------~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v 479 (650)
..+++.++|++|||+|+|++ ++|+.++|.+||+ ++. ||+. +.|||++ +
T Consensus 38 ~~~~~~~~i~~RrS~R~f~~-~~v~~e~L~~lL~~~~g~~~~~~aar~aPSa~---------n~qp~~~----------~ 97 (223)
T 3hj9_A 38 SGMPLMGTLWLRKSTREFDQ-QPLPLKQLSELLWAAAGVNRSLGGGRTAPSPY---------GETVIDV----------Y 97 (223)
T ss_dssp CSSBHHHHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHCEEETGGGEESSCCGG---------GCCCEEE----------E
T ss_pred CCcCHHHHHHhcCCccccCC-CCCCHHHHHHHHHHhhCCCccccCceecCCCC---------CccceEE----------E
Confidence 46899999999999999997 8999999999996 554 7754 5689883 3
Q ss_pred EEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEee
Q 006333 480 FIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVA 559 (650)
Q Consensus 480 ~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a 559 (650)
+| +.+|+|+|++..+.+ ..+..++++ ..+.+|.++.+|+++|++++
T Consensus 98 vv-----~~~~~y~y~~~~~~L-------------------------~~~~~~~~~----~~~~~~~~~~~Ap~~ivv~~ 143 (223)
T 3hj9_A 98 VA-----LPAGLYRYDPVHHCL-------------------------ELKRAADLR----SMTGYQDFVGMAPLDLVFVA 143 (223)
T ss_dssp EE-----ETTEEEEEETTTTEE-------------------------EEEESEECT----TCSSEECCCCCCSEEEEEEE
T ss_pred EE-----eCCeEEEEcCCCCEE-------------------------EEccccCHH----HHhcCCchhccCCEEEEEEE
Confidence 33 568999998765432 122233332 22357888999999999999
Q ss_pred ecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 560 HFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 560 ~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
+.++...+|+.++|++.++|+|+++|||+|+|+++|||+||||+|++++|+++|||++ ++.+++.++||+|.++..
T Consensus 144 ~~~~~~~~y~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~v~~~L~l~~-~~~~~~~i~iGyp~~~~~ 219 (223)
T 3hj9_A 144 NHGRMQEMPPKLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNE-DEEPILSQTIGRAASHVT 219 (223)
T ss_dssp EGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHTTCCT-TEEEEEEEEEECBCCC--
T ss_pred EhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeeeCHHHHHHHcCCCC-CceEEEEEEccCCCCCCC
Confidence 9998888899999999999999999999999999999999999999999999999997 679999999999988763
No 6
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}
Probab=99.92 E-value=3.4e-25 Score=248.35 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=149.8
Q ss_pred cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333 135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA 210 (650)
Q Consensus 135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY 210 (650)
..+.+.+.+| .+.+++|+.++|++||+.+.+.+.... ..+|.+||+||+|||++||++++++||+. |+|
T Consensus 325 ~~l~~~i~~RRSvR~F~~~~I~~e~L~~lL~aa~~~~~~~~-----~~~r~aPSagn~qp~~~yvvv~~v~gL~~--G~Y 397 (511)
T 3eo7_A 325 SDLEITMHKRRSTRAYNGEELTFDELKALLDFTYQPQNYID-----QSLDNSPDYFDLNLIETFIAVCGVQGLEA--GCY 397 (511)
T ss_dssp HHHHHHHHHCCCCSCBCCCCEEHHHHHHHHHHHHCGGGGGG-----GTCCSSCCCSCGGGCEEEEEESSEETSCS--EEE
T ss_pred ccHHHHHHhCCCccccCCCCCCHHHHHHHHHHhcCCccccc-----cCCccCCCCCCcCcEEEEEEEeccCCCCC--eeE
Confidence 4566666654 467889999999999999988654321 23699999999999999999999999995 999
Q ss_pred EecCCCCchhhhccCCchhc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCc
Q 006333 211 HYAPKEHALELRAKIPSRFD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWD 285 (650)
Q Consensus 211 hY~p~~h~L~~l~~~~~~~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~ 285 (650)
||+|.+|+|..+...+.... +. +.++.+|+++|++++++.+..||||+++||++++|+|+++|||+|+|+++|||
T Consensus 398 ~y~~~~h~L~~i~~~~~~~~l~~~~~~q~~~~~Ap~~iv~~ad~~~~~~~yg~~~~~~~~~dag~a~q~l~LaA~~lGlg 477 (511)
T 3eo7_A 398 YYAPKAQELRQIRFKNFRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLNLG 477 (511)
T ss_dssp EEETTTTEEEEEEESCCHHHHHHHTTTCHHHHHCSEEEEEEECHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEcCCCCEEEEecCccHHHHHHHHHcCCccccCCCEEEEEEEECchhhhhhchhhHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999998876553321 12 34667899999999999999999999999999999999999999999999999
Q ss_pred eEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 286 VKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 286 ~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|++++|+++.++++|||+. .+.++++++|
T Consensus 478 s~~ig~~~~~~v~~~L~lp~-~~~~~~~i~i 507 (511)
T 3eo7_A 478 VSGIGGFFDDQVNEVLGIPN-DEAVIYITTL 507 (511)
T ss_dssp EEEECCCCHHHHHHHHTCCT-TCEEEEEEEE
T ss_pred eEEEcccCHHHHHHHhCcCC-CceEEEEEEe
Confidence 99999999999999999985 5678888887
No 7
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=99.85 E-value=4.5e-21 Score=190.26 Aligned_cols=156 Identities=21% Similarity=0.324 Sum_probs=120.3
Q ss_pred CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
..+++.++|++|||+|+|++..+|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 6 ~~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~---------N~Qpw~f----------~vv~------- 59 (212)
T 3ge6_A 6 TATDFMEIVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSV---------NMQPWRF----------LVID------- 59 (212)
T ss_dssp CCCBHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC-------
T ss_pred cHHHHHHHHHhhHhHHhcCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCEEE----------EEEe-------
Confidence 4578999999999999998635999999999999997 8875 5799993 4443
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhc-ccccccccCceEEEEeeecchhhh--
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLS-CHQDIAGDGCFSLGMVAHFEPTLS-- 566 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~-~~Q~~~~~aa~~l~~~a~~~~~~~-- 566 (650)
+.+.+++|. .++ .+|.+..+|+++|+++++.+....
T Consensus 60 -------~~~~~~~l~----------------------------------~~~~~~~~~~~~a~~~iv~~~d~~~~~~~~ 98 (212)
T 3ge6_A 60 -------SEEGKATLA----------------------------------PLAKFNQVQVETSSAVIAVFGDMKAIDQLE 98 (212)
T ss_dssp -------SHHHHHHHG----------------------------------GGSTTCHHHHHHSSEEEEEEEETTGGGGHH
T ss_pred -------CHHHHHHHH----------------------------------hhcccCcccccCCCEEEEEEeCCchhhhHH
Confidence 222222221 122 356777889999999998764310
Q ss_pred -cccc-----------------------------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC-
Q 006333 567 -NKNV-----------------------------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL- 615 (650)
Q Consensus 567 -~yg~-----------------------------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL- 615 (650)
.|+. ......+.|+|+++|+|+|+|+++|||+||||+|+.++|+++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~~~~~~~v~~~L~l~ 178 (212)
T 3ge6_A 99 NIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPASALKDSILIDSGLVSMQLMLVARAHGYDTNPIGGYEKDQIAEAFGME 178 (212)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCC
Confidence 0000 001246799999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEccccCCcC
Q 006333 616 TGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 616 ~~~~~~~ly~~avG~p~~d~ 635 (650)
++ ++.+++.++||||.++.
T Consensus 179 p~-~~~~~~~ialGy~~~~~ 197 (212)
T 3ge6_A 179 KD-RYVPVMLLSIGKAVDAG 197 (212)
T ss_dssp SS-SEEEEEEEEEECBSSCC
T ss_pred CC-CceEEEEEEEeCCCCCC
Confidence 65 68999999999998874
No 8
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=99.85 E-value=6.9e-21 Score=189.19 Aligned_cols=156 Identities=17% Similarity=0.242 Sum_probs=119.8
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++..+|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 8 ~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~-------- 60 (213)
T 3gbh_A 8 INDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSV---------NMQPWRI----------AVVQ-------- 60 (213)
T ss_dssp CCBHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred HHHHHHHHHhhhhHhhcCCCCCCCHHHHHHHHHHHHhCCCcC---------CCCCcEE----------EEEe--------
Confidence 468999999999999999735999999999999997 8875 5799983 4443
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhc-ccccccccCceEEEEeeecchhhhc--
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLS-CHQDIAGDGCFSLGMVAHFEPTLSN-- 567 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~-~~Q~~~~~aa~~l~~~a~~~~~~~~-- 567 (650)
+.+.+++|. .++ .+|.++.+|+++|+++++.+.....
T Consensus 61 ------~~e~~~~L~----------------------------------~~~~~~~~~~~~ap~~iv~~~d~~~~~~~~~ 100 (213)
T 3gbh_A 61 ------SDEMKEKVK----------------------------------ESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQ 100 (213)
T ss_dssp ------SHHHHHHHT----------------------------------GGGGGGHHHHHHSSEEEEEEEETTGGGGHHH
T ss_pred ------CHHHHHHHH----------------------------------HhhccCchhhccCCeeEEEEecCchhhhHHH
Confidence 222222221 112 3566777899999999987642110
Q ss_pred -c------c-------------------c----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCC
Q 006333 568 -K------N-------------------V----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTG 617 (650)
Q Consensus 568 -y------g-------------------~----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~ 617 (650)
| | . ......++|+|+++|+|+|+|+++|||+||||+|+.++|+++|||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~i~~~~~~~v~~~L~lp~ 180 (213)
T 3gbh_A 101 IYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDS 180 (213)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCTTTHHHHHTCCT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecCcCHHHHHHHhCCCc
Confidence 0 0 0 01124578999999999999999999999999999999999999993
Q ss_pred CCceEEEEEEccccCCcC
Q 006333 618 SKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 618 ~~~~~ly~~avG~p~~d~ 635 (650)
+++.+++.++||||.++.
T Consensus 181 ~~~~~~~~i~lGy~~~~~ 198 (213)
T 3gbh_A 181 DRYVPVLAIAIGKKAQDA 198 (213)
T ss_dssp TTEEEEEEEEEECBSSCC
T ss_pred cCceEEEEEEecccCCCC
Confidence 378999999999998874
No 9
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=99.84 E-value=1.4e-20 Score=186.82 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=124.3
Q ss_pred CCCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCC
Q 006333 411 YKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLP 488 (650)
Q Consensus 411 ~~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~ 488 (650)
...|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 20 ~~~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~------ 73 (208)
T 4dn2_A 20 FQSMETLEAIRTRRSVRKFSD-RPVEPEKLRAVLDAARLAPSWA---------NMQCWRF----------VVVE------ 73 (208)
T ss_dssp TTCCBHHHHHHHCCBCCCBCC-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC------
T ss_pred cCcchHHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCEEE----------EEEE------
Confidence 456899999999999999997 8999999999999997 8865 5799983 3433
Q ss_pred CeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc
Q 006333 489 KGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK 568 (650)
Q Consensus 489 ~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y 568 (650)
+++.++.|.+.. .|+... .. .+. ....+|.++.+|+++|+++++.+.....+
T Consensus 74 --------~~~~~~~l~~~~----~~~~~~---------~~-~~~------~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~ 125 (208)
T 4dn2_A 74 --------DQATKVQISELS----YVEAYF---------GP-KGY------KSNPAQKALAEAPVVIIACGEPPQSGELR 125 (208)
T ss_dssp --------CHHHHHHHHHTC----CCCTTC---------CC-TTC------SSCTTHHHHHHSSEEEEEEECGGGSCEET
T ss_pred --------CHHHHHHHHHhh----hhhhhh---------hh-ccc------cccchhhhhcCCCEEEEEEEecccccccc
Confidence 233334444310 000000 00 000 01124567788999999999876542222
Q ss_pred ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
+ .++...|+|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||+|.++.
T Consensus 126 ~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~L~lp~-~~~~~~~i~lGyp~~~~ 188 (208)
T 4dn2_A 126 G---QQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVFDEQQLGELLGIPA-ELRIVGLFPLGYPLEGP 188 (208)
T ss_dssp T---EETHHHHHHHHHHHHHHHHHHTTCEECCBCCCCHHHHHHHHTCCT-TCEEEEEEEEECBSSCC
T ss_pred c---ccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeCcCCCC
Confidence 2 245789999999999999999999999999999999999999997 67999999999998765
No 10
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=99.84 E-value=4.8e-21 Score=187.91 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=120.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 M~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPS~~---------n~qpw~~----------~vv~--------- 52 (193)
T 3g14_A 2 MEFYEVIKKRKSIKKFEQ-TAIDRDKLLKIIDMAMRAPSWK---------NKTPYKF----------IVVE--------- 52 (193)
T ss_dssp CBHHHHHHHCCBCCCBCC-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred CcHHHHHHhCcchhcCCC-CCCCHHHHHHHHHHHHHCcCcc---------CCCCeEE----------EEEe---------
Confidence 689999999999999998 7999999999999997 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+.+.++.|.+.+. ... ..+|.++.+|+++|+++++.+.....+|
T Consensus 53 -----~~~~~~~l~~~~~--------------------~~~---------~~~~~~~~~Ap~~ivv~~~~~~~~~~~~-- 96 (193)
T 3g14_A 53 -----SDKLKLDIANAIE--------------------NKT---------SAASEAVLNSPMTIVAVANPEESGDVSG-- 96 (193)
T ss_dssp -----CHHHHHHHHHHBC--------------------CSS---------SHHHHHHHHSSEEEEEEECHHHHCEETT--
T ss_pred -----CHHHHHHHHHHHh--------------------hcc---------ccchhhhcCCCEEEEEEEeCcccccccc--
Confidence 2333344443210 000 1145677889999999998765443333
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEcccc
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGP 631 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p 631 (650)
.++.+.++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|
T Consensus 97 -~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~l~lp~-~~~~~~~i~lGyp 154 (193)
T 3g14_A 97 -KEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKIPD-NLRVVALTPLGVP 154 (193)
T ss_dssp -EEHHHHHHHHHHHHHHHHHHHTTCBBCCBCCBCHHHHHHHHTCCT-TSEEEEEEEEBCB
T ss_pred -ccchHhhHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeCC
Confidence 256789999999999999999999999999999999999999997 6799999999999
No 11
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=99.84 E-value=9.7e-21 Score=186.79 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=120.8
Q ss_pred CcH---HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCC
Q 006333 414 FTV---REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLP 488 (650)
Q Consensus 414 ~~l---~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~ 488 (650)
|++ .++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 25 M~~~~l~~~i~~RrSvR~f~~-~~V~~e~l~~il~aa~~APS~~---------n~Qpwrf----------~vv~------ 78 (198)
T 3ge5_A 25 QDFRLIEDFFRTRRSVRKFID-RPVEEEKLMAILEAGRIAPSAH---------NYQPWHF----------LVVR------ 78 (198)
T ss_dssp TTCCHHHHTTTTCCCCCCBCS-CCCCHHHHHHHHHHHHHCCCGG---------GCCCEEE----------EEEC------
T ss_pred ccHHHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHHCCCcC---------CCCCEEE----------EEEE------
Confidence 667 999999999999997 8999999999999997 8865 5799983 4443
Q ss_pred CeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc
Q 006333 489 KGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK 568 (650)
Q Consensus 489 ~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y 568 (650)
+.+.++.|.+ +++|.++.+|+++|+++++.+.....
T Consensus 79 --------~~e~~~~l~~-----------------------------------~~~~~~~~~Ap~~ivv~~~~~~~~~~- 114 (198)
T 3ge5_A 79 --------EEEGRKRLAP-----------------------------------CSQQPWFPGAPIYIITLGDHQRAWKR- 114 (198)
T ss_dssp --------SHHHHHHHGG-----------------------------------GCCCTTGGGCSEEEEEEEETTTSCEE-
T ss_pred --------CHHHHHHHHH-----------------------------------HhCcccccCCCEEEEEEEeccccccc-
Confidence 2222222111 12577888999999999987643211
Q ss_pred ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
.+++....|+|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||||.++..
T Consensus 115 --~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~iGyp~~~~~ 179 (198)
T 3ge5_A 115 --GAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDIPS-HMTPVSILALGYGDPTVP 179 (198)
T ss_dssp --TTEESHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCT-TEEEEEEEEEECBCTTSC
T ss_pred --ccccchHHHHHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhCcCC-CceEEEEEEEeCcCCCCC
Confidence 34566789999999999999999999999999999999999999998 679999999999987753
No 12
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=99.84 E-value=8.7e-21 Score=187.35 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=119.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++.++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 4 ~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------- 55 (206)
T 3gag_A 4 NDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGN---------NFQPWRV----------VVVK--------- 55 (206)
T ss_dssp HHHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHHCCCCC---------CCCCeEE----------EEEc---------
Confidence 36889999999999998536999999999999997 8875 5799993 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hc-c-
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SN-K- 568 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~-y- 568 (650)
+.+.+++|. .++.+|.+..+|+++|+++++.+... .+ |
T Consensus 56 -----~~~~~~~l~----------------------------------~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~ 96 (206)
T 3gag_A 56 -----NKNKQEDLK----------------------------------KLAALQPQVATASAVFLLFGDENAYDLTWWQE 96 (206)
T ss_dssp -----CHHHHHHHH----------------------------------HTTTTCTHHHHSSEEEEEEEEGGGCCHHHHHH
T ss_pred -----CHHHHHHHH----------------------------------HHhcCCccccCCCEEEEEEecCCcccHHHHHH
Confidence 222222222 22346777788999999999876431 00 0
Q ss_pred -----c-----------------------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCc
Q 006333 569 -----N-----------------------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKF 620 (650)
Q Consensus 569 -----g-----------------------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~ 620 (650)
| .......+.++|+++|+|+|+|+++|||+||||+|+.++|+++|||++ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~L~lp~-~~ 175 (206)
T 3gag_A 97 FHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFAMNLMQVVRVYGYDSVPMRGVDFDAIKTYLDMPN-GW 175 (206)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTCCT-TE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCcCC-Cc
Confidence 0 001125678999999999999999999999999999999999999996 67
Q ss_pred eEEEEEEccccCCcC
Q 006333 621 QSLYHFTVGGPVVDR 635 (650)
Q Consensus 621 ~~ly~~avG~p~~d~ 635 (650)
.+++.++||||.++.
T Consensus 176 ~~~~~i~lGy~~~~~ 190 (206)
T 3gag_A 176 EPILMLPVGKALQAG 190 (206)
T ss_dssp EEEEEEEEECBSSCC
T ss_pred ceEEEEEeeccCCCC
Confidence 999999999998764
No 13
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=99.84 E-value=1.6e-20 Score=191.72 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=120.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 ~~~~~~i~~RRSiR~F~~-~~V~~e~L~~il~aA~~APS~~---------N~Qpw~~----------ivv~--------- 52 (249)
T 3n2s_A 2 NNTIETILNHRSIRSFTD-QLLTAEEIDTLVKSAQAASTSS---------YVQAYSI----------IGVS--------- 52 (249)
T ss_dssp CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred hHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCcCeEE----------EEEe---------
Confidence 468899999999999998 8999999999999997 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc---
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK--- 568 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y--- 568 (650)
+.+.++. +..++.+|.++.+++..++++++..+....+
T Consensus 53 -----d~~~~~~----------------------------------L~~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~ 93 (249)
T 3n2s_A 53 -----DPEKKRE----------------------------------LSVLAGNQPYVEKNGHFFVFCADLYRHQQLAEEK 93 (249)
T ss_dssp -----CHHHHHH----------------------------------HHHHTTSCGGGTSSSEEEEEEEECHHHHHHHHHT
T ss_pred -----CHHHHHH----------------------------------HHHhhcCchhhHhCcchhhhhhhhHHHHHHHHHc
Confidence 2222222 2223345778889999999999986543221
Q ss_pred cc---------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 569 NV---------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 569 g~---------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
|. ..+.....|+|+++|||+|+|+++|||+||||+| +.++|+++||||+ ++.+++.++||+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~slGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~ 170 (249)
T 3n2s_A 94 GEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTPD-HVLPLFGLAVGHPANLS 170 (249)
T ss_dssp TCCCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHHTCCT-TEEEEEEEEEECBSCCC
T ss_pred CCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCEeeeccccccHHHHHHHhCcCC-CceEEEEEEEeeeCCCC
Confidence 11 0122467999999999999999999999999999 7789999999997 67899999999998765
No 14
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=99.84 E-value=3.2e-20 Score=184.72 Aligned_cols=180 Identities=11% Similarity=0.087 Sum_probs=125.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 M~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------- 52 (219)
T 3eo8_A 2 MELQDTIFKRQSVRKFKN-QDVSDEDILKMIKAAGAAPSGK---------NIQNWHF----------VVIK--------- 52 (219)
T ss_dssp CBHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC---------
T ss_pred CchHHHHHhCeehhccCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE---------
Confidence 789999999999999998 7999999999999997 8865 5799993 4543
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc-HHHHHhhhcccccccccCceEEEEeeecchhh--hcc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD-CQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL--SNK 568 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd-~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~--~~y 568 (650)
+.+.++.|.+.+...+.-.. .......++ ...........|.++.+|+++|+++++.+... ..+
T Consensus 53 -----~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~~ 119 (219)
T 3eo8_A 53 -----RRDLMEKIADVITKKQQEIL--------VEMDKVSVDKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYEL 119 (219)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHHHTGGGGGSSEEEEEEECCCCCTTHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHhh--------hcccccccHHHHHHHHhhhhhhhHhhcCCEEEEEEecccchhhhhhh
Confidence 33444555543221000000 000000001 11111111123678889999999999876421 001
Q ss_pred cccc-----------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhC----CCCCCceEEEEEEcccc
Q 006333 569 NVWM-----------YPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLG----LTGSKFQSLYHFTVGGP 631 (650)
Q Consensus 569 g~~~-----------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~Lg----L~~~~~~~ly~~avG~p 631 (650)
+..+ .+....++|+++|||+|+|+++|||+||||+ |++++++++|| |+++++.+++.++||||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~L~~~~~lp~~~~~~~~~i~lGyp 199 (219)
T 3eo8_A 120 ELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELGYGSCWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLALGVP 199 (219)
T ss_dssp HHTTCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCEEEEECTTGGGHHHHHHHHHHHHCCCCTTCEEEEEEEEECB
T ss_pred hhcccchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCeeeeecCcccChHHHHHHhCcccCCCCCCceEEEEEEEecc
Confidence 1111 3456789999999999999999999999987 89999999999 99756689999999999
Q ss_pred CCcC
Q 006333 632 VVDR 635 (650)
Q Consensus 632 ~~d~ 635 (650)
.++.
T Consensus 200 ~~~~ 203 (219)
T 3eo8_A 200 EDNL 203 (219)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 15
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=99.83 E-value=2.5e-20 Score=180.22 Aligned_cols=146 Identities=22% Similarity=0.216 Sum_probs=116.5
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 5 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPs~~---------n~qp~~~----------~vv~-------- 56 (178)
T 3e39_A 5 ENPVLQAIRQRRSIRRYTD-EAVSDEAVRLILEAGIWAPSGL---------NNQPCRF----------LVIR-------- 56 (178)
T ss_dssp CCHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEE--------
T ss_pred chHHHHHHHhCcchhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE--------
Confidence 4789999999999999997 8999999999999997 8864 5799983 4443
Q ss_pred eeeecCCcchh-hHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333 491 LYFLVRNEDHL-GELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN 569 (650)
Q Consensus 491 lY~y~~~~~~l-~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg 569 (650)
+.+.+ +.|.. ++.+|.++.+|+++|+++++.+... .
T Consensus 57 ------~~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~~---~ 93 (178)
T 3e39_A 57 ------ADDPRCDILAA----------------------------------HTRYGHIVRGAKVIILVFLDREAMY---N 93 (178)
T ss_dssp ------TTSTHHHHHHT----------------------------------TCSCHHHHHHCSEEEEEEEEGGGCS---C
T ss_pred ------CHHHHHHHHHH----------------------------------hhhcchhhcCCCEEEEEEEcccccc---c
Confidence 22222 22221 1224567778999999999865321 0
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333 570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPV 632 (650)
Q Consensus 570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~ 632 (650)
-...+.|+|+++|||+|+|+++|||+|||| +|++++++++|||+++++.+++.++||||.
T Consensus 94 ---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~~~~~~~~~i~lGyp~ 155 (178)
T 3e39_A 94 ---EVKDHQAAGAAVQNMLLAAHALQLGAVWLGEIINQAATLLPALALDPARLSFEAAIAAGHPA 155 (178)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGHHHHHHHTTCCTTTEEEEEEEEEESBS
T ss_pred ---cccHHHHHHHHHHHHHHHHHHcCCeEEEecCcccchHHHHHHhCcCCCceEEEEEEEEeccC
Confidence 124589999999999999999999999999 899999999999998437999999999997
No 16
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=99.83 E-value=3.4e-20 Score=178.48 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=117.8
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 5 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~~----------~vv~-------- 56 (172)
T 3m5k_A 5 ENQTLETILNRKSVRKYKD-RPVEKEKIDKLIRAGMAAPSSR---------DRRPWEF----------IIVT-------- 56 (172)
T ss_dssp CCHHHHHHHHCCCCCCBCS-SCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred chHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEc--------
Confidence 4789999999999999997 8999999999999997 8865 5699983 4443
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV 570 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~ 570 (650)
+.+.++.|.+ ...+|.++.+|+++|+++++.+..
T Consensus 57 ------~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~------ 90 (172)
T 3m5k_A 57 ------DRKALDTMAE----------------------------------GLPFARMLKETRQAIVVCGDTIKS------ 90 (172)
T ss_dssp ------CHHHHHHHHH----------------------------------HCTTCGGGGGCSEEEEEEEETTTC------
T ss_pred ------CHHHHHHHHH----------------------------------hcccchhHhcCCEEEEEEecCccC------
Confidence 2233333322 112456778899999999886531
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
.+....++|+++|+|+|+|+++|||+||+|+|.. +++++.|||++ ++.+++.++||||.++..
T Consensus 91 --~~~~~~d~g~a~~nl~LaA~~~Glgt~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~ 157 (172)
T 3m5k_A 91 --SNAWFLDCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEIVRKELRLPD-HIMPLNVIPVGYPMQKET 157 (172)
T ss_dssp --TTTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHHHHHHHHTCCT-TEEEEEEEEEECBSSCCC
T ss_pred --CccHHHHHHHHHHHHHHHHHHcCCeEEEecccCcchhHHHHHHHhCcCC-CcEEEEEEEEeccCCCCC
Confidence 2345789999999999999999999999998875 78999999997 679999999999987764
No 17
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=99.83 E-value=1.5e-20 Score=185.26 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=119.9
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.+-
T Consensus 10 ~~~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~~------ 63 (200)
T 2fre_A 10 EYPVDPLFLDRWSPRAFDG-SPMPKEHLLTILDAAHWAPSAS---------NHQPWRF----------VYAHKD------ 63 (200)
T ss_dssp SSCCCTHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEETT------
T ss_pred CCcHHHHHHhCcCccccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCEEE----------EEEeCc------
Confidence 3567789999999999998 7999999999999986 8865 5799983 444421
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV 570 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~ 570 (650)
.+.++.|... +. ..+|.++.+|+++|+++++.......+..
T Consensus 64 -------~~~~~~l~~~---------------------~~-----------~~~~~~~~~ap~~iv~~~~~~~~~~~~~~ 104 (200)
T 2fre_A 64 -------SEDWPLFVEL---------------------LM-----------EGNQKWAKNASVLLFVISRDHTISHEGEK 104 (200)
T ss_dssp -------STTHHHHHHT---------------------BC-----------HHHHHHHTTSSEEEEEEEESEEECTTCCE
T ss_pred -------HHHHHHHHHH---------------------HH-----------hhhhHHHhcCCEEEEEEEecccccCcccc
Confidence 0122222220 00 12456778899999999886541111111
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..++...+++|+++|||+|+|+++|||+|++|+|++++++++|||++ ++.+++.++||+|.++.
T Consensus 105 ~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~ 168 (200)
T 2fre_A 105 KPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDIPD-GFKVEAGVAIGTLTDKS 168 (200)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHTTCCT-TEEEEEEEEEECBCCGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHCCcceeeEcccCHHHHHHHcCCCC-CceEEEEEEEeccCCcc
Confidence 34566789999999999999999999999999999999999999997 67999999999998764
No 18
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=99.83 E-value=7.1e-21 Score=189.10 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=119.0
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 2 M~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~~a~~aPs~~---------n~qpw~~----------~vv~--------- 52 (209)
T 3of4_A 2 MYLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSY---------GLQPYCT----------LVIR--------- 52 (209)
T ss_dssp CHHHHHHHHCCBCSSBCS-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred CcHHHHHHHhhhHHhcCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEc---------
Confidence 678999999999999997 8999999999999997 8865 5799993 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh---cc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS---NK 568 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~---~y 568 (650)
+.+.+++|+ .++.+|.+..+|+++|+++++.+.... .+
T Consensus 53 -----~~~~~~~l~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~ 93 (209)
T 3of4_A 53 -----NKGLREQLV----------------------------------NHSFGQQKVADSSALVIFAAKTGAVADIVDPY 93 (209)
T ss_dssp -----CHHHHHHHH----------------------------------HTTTTCTHHHHSSEEEEEEEECSCTHHHHHHH
T ss_pred -----CHHHHHHHH----------------------------------HHhcCCcccCCCCeEEEEEecccccHhhHHHH
Confidence 222222222 223467777889999999888654211 11
Q ss_pred -------cc-----------------------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCC
Q 006333 569 -------NV-----------------------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGS 618 (650)
Q Consensus 569 -------g~-----------------------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~ 618 (650)
|. ........|+|+++|+|+|+|+++|||+||||+|+.++|+++||||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~g~~~~~v~~~L~lp~~ 173 (209)
T 3of4_A 94 ISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDL 173 (209)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCC
Confidence 00 011234689999999999999999999999999999999999999863
Q ss_pred CceEEEEEEccccCCcC
Q 006333 619 KFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 619 ~~~~ly~~avG~p~~d~ 635 (650)
++.+++.++||||.++.
T Consensus 174 ~~~~~~~ialGyp~~~~ 190 (209)
T 3of4_A 174 GLSTVFACPVGYRSEAD 190 (209)
T ss_dssp TEEEEEEEEEECBCTTC
T ss_pred CceEEEEEEeecCCccc
Confidence 57899999999999774
No 19
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.83 E-value=3.9e-20 Score=178.60 Aligned_cols=147 Identities=13% Similarity=0.197 Sum_probs=118.2
Q ss_pred CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
..+++.++|++|||+|+|++ .+|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 8 ~~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qp~~~----------~vv~------- 60 (175)
T 3kwk_A 8 TGNAALDNIFERKSVRTYLN-KGVEKEKIDLMLRAGMSAPSGK---------DVRPWEF----------VVVS------- 60 (175)
T ss_dssp CCCHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC-------
T ss_pred CchHHHHHHHhCcCccCCCC-CCCCHHHHHHHHHHHHHCcCcc---------CCCCeEE----------EEEe-------
Confidence 34789999999999999997 8999999999999997 8865 5699983 4443
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN 569 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg 569 (650)
+.+.++.|.. ...+|.++.+|+++|+++++.+..
T Consensus 61 -------~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~----- 94 (175)
T 3kwk_A 61 -------DRAKLDSMAA----------------------------------ALPYAKMLTQARNAIIVCGDSARS----- 94 (175)
T ss_dssp -------CHHHHHHHHH----------------------------------HCTTCGGGGGCSEEEEEEEETTTC-----
T ss_pred -------CHHHHHHHHH----------------------------------hcccchhhhcCCEEEEEEEeCccc-----
Confidence 2233333322 122466788899999999886531
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
+....|+|+++|||+|+|+++|||+||+|+|.. ++++++|||++ ++.+++.++||||.++..
T Consensus 95 ----~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~ 160 (175)
T 3kwk_A 95 ----FYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEVVRKYTHLPE-NILPLCVIPFGYPATKEQ 160 (175)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHHHHHHHHTCCT-TEEEEEEEEEESBSSCCC
T ss_pred ----cchHHHHHHHHHHHHHHHHHcCCCeEEEccccccchHHHHHHHhCcCC-CcEEEEEEEEeccCCCCC
Confidence 245789999999999999999999999998875 78999999997 679999999999988764
No 20
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=99.83 E-value=4.5e-20 Score=187.28 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=119.4
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------ivv~--------- 52 (240)
T 1bkj_A 2 NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSS---------MLQVVSI----------VRVT--------- 52 (240)
T ss_dssp CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC---------
T ss_pred hHHHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHhCCCcc---------CCCCEEE----------EEEc---------
Confidence 368899999999999998 7999999999999986 8864 5789983 3332
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+.+.++.| ..++.+|.++.++++.+++++++.+....+...
T Consensus 53 -----~~~~~~~l----------------------------------~~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~ 93 (240)
T 1bkj_A 53 -----DSEKRNEL----------------------------------AQFAGNQAYVESAAEFLVFCIDYQRHATINPDV 93 (240)
T ss_dssp -----CHHHHHHH----------------------------------HHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTC
T ss_pred -----CHHHHHHH----------------------------------HHHhCCCchhhcCchhhHHHHhhHHHHHHHHHh
Confidence 22222222 222335777778899999999877644332221
Q ss_pred ------cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 572 ------MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 572 ------~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.+.....|+|+++|+|+|+|+++|||+||||+| ++++|+++||||+ ++.+++.++||+|.++.
T Consensus 94 ~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~ 164 (240)
T 1bkj_A 94 QADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPE-NSAVLFGMCLGHPDQNP 164 (240)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBSCCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCHHHHHHHhCcCC-CeeEEEEEEEeccCCCC
Confidence 234567899999999999999999999999998 6789999999997 57899999999998765
No 21
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=99.83 E-value=5e-20 Score=180.65 Aligned_cols=149 Identities=16% Similarity=0.261 Sum_probs=117.1
Q ss_pred CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
..+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 18 ~~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~------- 70 (191)
T 3h4o_A 18 QGMNFVELAKKRYSCRNYQD-RKVEKEKLEKVLDVARIAPTGG---------NRQPQRL----------IVIQ------- 70 (191)
T ss_dssp --CCHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHHSCCGG---------GCCCEEE----------EEEC-------
T ss_pred CHHHHHHHHHhCccccccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEe-------
Confidence 45789999999999999997 8999999999999997 8865 5799983 4443
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN 569 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg 569 (650)
+.+.++.|... . . ..+|+++|+++++.+.....+
T Consensus 71 -------~~e~~~~l~~~----------------------------------~-~---~~~Ap~~ivv~~~~~~~~~~~- 104 (191)
T 3h4o_A 71 -------EKEGINKLSKA----------------------------------A-N---IYDAPLAILVCGDKDKVWTRP- 104 (191)
T ss_dssp -------SHHHHHHHHHH----------------------------------S-C---CTTCSEEEEEEEETTTSCBCT-
T ss_pred -------CHHHHHHHHHh----------------------------------c-C---cCCCCEEEEEEEecchhcccc-
Confidence 22332223220 0 0 357899999999876533221
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.++
T Consensus 105 ~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGyp~~~ 168 (191)
T 3h4o_A 105 FDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNPDIIREEFSLPD-NLEPINILLMGYESKI 168 (191)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCT-TEEEEEEEEEECBSSC
T ss_pred cccccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeccCCc
Confidence 123456789999999999999999999999999999999999999997 6799999999999877
No 22
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0
Probab=99.83 E-value=4.7e-20 Score=188.15 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=118.8
Q ss_pred cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333 415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY 492 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY 492 (650)
++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 1 d~~e~i~~RRSvR~F~~-~pV~~e~L~~ileaA~~APS~~---------N~Qpw~f----------ivv~---------- 50 (248)
T 3eof_A 1 GMMDTVKNRRTIRKYQQ-KDITPDLLNDLLETSFRASTMG---------GMQLYSV----------VVTR---------- 50 (248)
T ss_dssp CHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC----------
T ss_pred ChHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCcCeEE----------EEEE----------
Confidence 36789999999999998 8999999999999997 8865 5799983 4443
Q ss_pred eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc----
Q 006333 493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK---- 568 (650)
Q Consensus 493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y---- 568 (650)
+.+.++. +..++.+|.++.+|+++|+++++..+.....
T Consensus 51 ----~~e~~~~----------------------------------L~~~~~~~~~~~~Ap~~ivv~~d~~~~~~~~~~~~ 92 (248)
T 3eof_A 51 ----DAEKKEI----------------------------------LSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERN 92 (248)
T ss_dssp ----CHHHHHH----------------------------------HTTTTTTCTHHHHSSEEEEEEEECHHHHHHHHTTT
T ss_pred ----CHHHHHH----------------------------------HHHHhcCCCcccCCCEEEEEEEechHhHHHHHhhc
Confidence 2222111 1122336777888999999999976532110
Q ss_pred cccc------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 569 NVWM------YPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 569 g~~~------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
+..+ +.....|+|+++|+|+|+|+++|||+||||+ |+.++|+++||||+ ++.+++.++||+|.++.
T Consensus 93 ~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLGsc~ig~~~~~~~~v~~~L~lp~-~~~~v~~i~lGyp~~~~ 166 (248)
T 3eof_A 93 AVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPE-LVFPITTVTVGYPAESP 166 (248)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGTSHHHHHHHHTCCT-TEEEEEEEEEECBCCCC
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCcCC-CceEEEEEEEeeeCCCC
Confidence 1112 2356899999999999999999999999998 88889999999998 67999999999998765
No 23
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=99.82 E-value=4.2e-20 Score=187.48 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=118.9
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~~~~~i~~RRSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------ivv~--------- 52 (240)
T 1f5v_A 2 TPTIELICGHRSIRHFTD-EPISEAQREAIINSARATSSSS---------FLQCSSI----------IRIT--------- 52 (240)
T ss_dssp CHHHHHHHTCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC---------
T ss_pred hHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCCCcc---------cCCCeEE----------EEEe---------
Confidence 468899999999999998 7999999999999986 8864 5789983 3432
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc-
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV- 570 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~- 570 (650)
+.+.++.| ..++.+|.++.+++..+++++++.+....+..
T Consensus 53 -----~~~~~~~l----------------------------------~~~~~~~~~~~~ap~~iv~~~d~~~~~~~~~~~ 93 (240)
T 1f5v_A 53 -----DKALREEL----------------------------------VTLTGGQKHVAQAAEFWVFCADFNRHLQICPDA 93 (240)
T ss_dssp -----CHHHHHHH----------------------------------HHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTC
T ss_pred -----CHHHHHHH----------------------------------HHHhcCChhHHcccHHHHHHHHHHHHHHhhhhh
Confidence 22222222 22233567777889999999987654322211
Q ss_pred -----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 571 -----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 571 -----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..++....|+|+++|||+|+|+++|||+||||+| ++++|+++||||+ ++.+++.++||+|.++.
T Consensus 94 ~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~ 164 (240)
T 1f5v_A 94 QLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQ-HVLPLFGLCLGWPADNP 164 (240)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBCCCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCCCC-CceEEEEEEEeccCCCC
Confidence 2345668999999999999999999999999998 6789999999997 57899999999998764
No 24
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=99.82 E-value=1.4e-19 Score=176.30 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=120.2
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 4 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qpw~f----------~vv~--------- 54 (189)
T 3pxv_A 4 NETLKVIAERYSCRDFKN-EMPSDELLQAIAEAAIQAPSGM---------NRQAWRV----------IVVK--------- 54 (189)
T ss_dssp CHHHHHHHHCCCCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCBCE----------EEEC---------
T ss_pred HHHHHHHHhCeehhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEc---------
Confidence 578999999999999997 8999999999999997 8865 5699993 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+++.++.|.+.+...+.. ...++ ........++.++.+|+++|+++++.+..
T Consensus 55 -----~~~~~~~l~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~------- 106 (189)
T 3pxv_A 55 -----NKELMQEMEAEGLAYLAG--------------MEDQS--SYNRIMERGGRLFYGAPCMIVVPIDPTQY------- 106 (189)
T ss_dssp -----CHHHHHHHHHHHHHHHHT--------------SSSCH--HHHHHHHTTSCTTTTCSEEEEEEECGGGH-------
T ss_pred -----CHHHHHHHHHHHHHHHHh--------------cccCc--HHHHHHhcccCccCCCCEEEEEEecCCCC-------
Confidence 233445555543221110 00111 11122223456788999999988875421
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--------cchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--------FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--------f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
...+.|+|+++|||+|+|+++|||+||+|+ |++++++++|||++ ++.+++.++||||.++
T Consensus 107 --~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~ 174 (189)
T 3pxv_A 107 --GPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLRAEEFSKRLGFPE-GYAFGCSVLLGHANTT 174 (189)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCEEEECGGGGGGGTTSTTHHHHHHHHTCCT-TCEEEEEEEEECBSSC
T ss_pred --cchhhhHHHHHHHHHHHHHHCCCceehhccHHHhhccccchHHHHHHcCcCC-CcEEEEEEEEecCCCC
Confidence 123789999999999999999999999997 67789999999997 5789999999999876
No 25
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=99.82 E-value=4.5e-20 Score=181.64 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=114.6
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 7 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~-------- 58 (205)
T 1nox_A 7 VLDAKTAALKRRSIRRYRK-DPVPEGLLREILEAALRAPSAW---------NLQPWRI----------VVVR-------- 58 (205)
T ss_dssp CCCHHHHHHHCCCCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCEEE----------EEEC--------
T ss_pred cchHHHHHHHhhhhccCCC-CCCCHHHHHHHHHHHhhCcCcC---------CccceEE----------EEEc--------
Confidence 4789999999999999998 6999999999999997 8865 5799983 4443
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecch---hh--
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEP---TL-- 565 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~---~~-- 565 (650)
+.+.++.|.+ ++.+|....+++..++++++... ..
T Consensus 59 ------~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~ 98 (205)
T 1nox_A 59 ------DPATKRALRE----------------------------------AAFGQAHVEEAPVVLVLYADLEDALAHLDE 98 (205)
T ss_dssp ------CHHHHHHHHH----------------------------------HTTTCTHHHHSSEEEEEEECHHHHHHTGGG
T ss_pred ------CHHHHHHHHH----------------------------------hccCChhhcCCCeEEEEEecccchHHHHHH
Confidence 2222222322 12234444556666666666431 00
Q ss_pred -------------------hccc----cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceE
Q 006333 566 -------------------SNKN----VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQS 622 (650)
Q Consensus 566 -------------------~~yg----~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ 622 (650)
..|+ ...+...+.++|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~-~~~~ 177 (205)
T 1nox_A 99 VIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPS-RAAI 177 (205)
T ss_dssp TSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TCEE
T ss_pred HHHhccCcHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHhCCCC-CCce
Confidence 0110 011355689999999999999999999999999999999999999997 6789
Q ss_pred EEEEEccccCCcC
Q 006333 623 LYHFTVGGPVVDR 635 (650)
Q Consensus 623 ly~~avG~p~~d~ 635 (650)
++.++||+|.++.
T Consensus 178 ~~~i~lGyp~~~~ 190 (205)
T 1nox_A 178 PALVALGYPAEEG 190 (205)
T ss_dssp EEEEEEESBSSCC
T ss_pred EEEEEeccCCCCC
Confidence 9999999998764
No 26
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=99.82 E-value=3.7e-20 Score=189.66 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=118.7
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ +.|||++ ++|.
T Consensus 2 ~~~~~~i~~RRSiR~F~~-~~V~~e~l~~il~aA~~APS~~---------n~Qpw~~----------ivv~--------- 52 (255)
T 1zch_A 2 NEVIKSLTDHRSIRSYTD-EPVAQEQLDQIIEAVQSAPSSI---------NGQQVTV----------ITVQ--------- 52 (255)
T ss_dssp CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHHSCCGG---------GCCCEEE----------EEEC---------
T ss_pred hHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEEc---------
Confidence 468899999999999998 7999999999999997 8864 5799983 3433
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc---
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK--- 568 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y--- 568 (650)
+.+.++.|. .++.+|.++.+++..+++++++.+....+
T Consensus 53 -----d~~~~~~L~----------------------------------~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~ 93 (255)
T 1zch_A 53 -----DKERKKKIS----------------------------------ELAGGQPWIDQAPVFLLFCADFNRAKIALEDL 93 (255)
T ss_dssp -----CHHHHHHHH----------------------------------HHTTCCHHHHHSSEEEEEEEECHHHHHHHHHH
T ss_pred -----CHHHHHHHH----------------------------------HhhccchhhhcCCceeEEEEechHHHHHHHHh
Confidence 222222222 22335677778899999999876543211
Q ss_pred -c--------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 569 -N--------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 569 -g--------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
| ...+.....|+|+++|||+|+|+++|||+||||+| ++++|+++||||+ ++.+++.++||+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~ 170 (255)
T 1zch_A 94 HDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPK-YVFPLSGLVIGHPADRS 170 (255)
T ss_dssp HCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHTTCCT-TEEEEEEEEEECBSCCC
T ss_pred cCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCcEeeecccccCHHHHHHHhCcCC-CceEEEEEEEeccCCCC
Confidence 1 01234578999999999999999999999999998 7889999999997 57899999999998764
No 27
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=99.82 E-value=6.7e-20 Score=180.45 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=114.2
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 4 m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------- 54 (204)
T 2b67_A 4 MKFLELNKKRHATKHFTD-KLVDPKDVRTAIEIATLAPSAH---------NSQPWKF----------VVVR--------- 54 (204)
T ss_dssp CHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEES---------
T ss_pred hHHHHHHHhhhhhhccCC-CCCCHHHHHHHHHHHHhCcCcc---------cCCCeEE----------EecC---------
Confidence 678999999999999997 8999999999999997 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------ 565 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------ 565 (650)
+++ + +|.. +.. + .+|....+++++++++++.+...
T Consensus 55 -----~~~-~-~l~~----------------------~~~-~---------~~~~~~~~a~~~iv~~~~~~~~~~~~~~~ 95 (204)
T 2b67_A 55 -----EKN-A-ELAK----------------------LAY-G---------SNFEQVSSAPVTIALFTDTDLAKRARKIA 95 (204)
T ss_dssp -----SSH-H-HHHT----------------------TBC-T---------THHHHHHHSSEEEEEEEESCHHHHHHHHH
T ss_pred -----Chh-H-HHHH----------------------HHH-H---------cCchhhcCCCEEEEEEecCchHHHHHHHH
Confidence 121 1 2221 000 0 23445567888888888764210
Q ss_pred -------------hccc-----------c-ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCc
Q 006333 566 -------------SNKN-----------V-WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKF 620 (650)
Q Consensus 566 -------------~~yg-----------~-~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~ 620 (650)
..|+ . ..+.....|+|+++|+|+|+|+++|||+||||+|++++|+++|||++ ++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~-~~ 174 (204)
T 2b67_A 96 RVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVAMNLVLALTDQGIGSNIILGFDKSKVNEVLEIED-RF 174 (204)
T ss_dssp HHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TE
T ss_pred HcccchhhHHHHHHHHHhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeeEcccCHHHHHHHhCCCC-CC
Confidence 0011 0 01124567999999999999999999999999999999999999997 67
Q ss_pred eEEEEEEccccCCc
Q 006333 621 QSLYHFTVGGPVVD 634 (650)
Q Consensus 621 ~~ly~~avG~p~~d 634 (650)
.+++.++||||.++
T Consensus 175 ~~~~~i~lGyp~~~ 188 (204)
T 2b67_A 175 RPELLITVGYTDEK 188 (204)
T ss_dssp EEEEEEEEECBSSC
T ss_pred ceEEEEEeecCCCC
Confidence 89999999999876
No 28
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.82 E-value=3.9e-20 Score=195.76 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=121.2
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
++++.++|++|||+|+|++ ++|+.|+|.+||++++ ||++ |.|||++ ++|.
T Consensus 141 ~~~~~~~I~~RRSiR~F~~-~~V~~e~l~~ileaA~~APS~~---------N~Qpwrf----------ivv~-------- 192 (322)
T 4eo3_A 141 DLSLNKHIEWRRARRALKK-DRVPREELELLIKAAHLAPSCM---------NNQPWRF----------VVVD-------- 192 (322)
T ss_dssp HTSCCHHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC--------
T ss_pred hhHHHHHHHhhhccCCcCc-cccCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEe--------
Confidence 4677899999999999998 7999999999999997 9875 5799993 4543
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV 570 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~ 570 (650)
+++.++.|.+ .+..+|.++.+|+++|+++++.+..... .
T Consensus 193 ------d~e~~~~l~~---------------------------------~~~~~~~~~~~Ap~~ivv~~~~~~~~~~--~ 231 (322)
T 4eo3_A 193 ------EEELLKKIHE---------------------------------ALPGGNYWMKNAPALIAVHSKKDFDCAL--P 231 (322)
T ss_dssp ------CHHHHHHHHT---------------------------------TSCGGGGGGGGCSEEEEEEECGGGSCEE--T
T ss_pred ------CHHHHHHHHH---------------------------------hhhhccccccCCCEEEEEEeeccccccc--c
Confidence 2333222221 1112456778899999888875432211 1
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCcc
Q 006333 571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI 637 (650)
Q Consensus 571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~ 637 (650)
....+...|+|+++|||+|+|+++|||+||||+|+.++|+++||||+ ++.+++.++||||.++..+
T Consensus 232 ~~~~~~~~d~g~a~~nl~LaA~~~GLgs~~~~~~~~~~v~~~L~lP~-~~~~~~~ialGyp~e~~~~ 297 (322)
T 4eo3_A 232 DNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIPE-DHVLITLIAVGYLGDESEL 297 (322)
T ss_dssp TTEECHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TSEEEEEEEEECBCCGGGS
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCcCEEEcCccCHHHHHHHcCcCC-CCEEEEEEEEeCcCCccCC
Confidence 22345678999999999999999999999999999999999999997 6799999999999887643
No 29
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=99.82 E-value=8.1e-20 Score=174.92 Aligned_cols=144 Identities=15% Similarity=0.290 Sum_probs=113.5
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333 418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV 495 (650)
Q Consensus 418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~ 495 (650)
++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 3 ~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qp~~~----------~vv~------------- 49 (168)
T 3e10_A 3 DIINNRRSIRNYKG-KKVEKEKIEKLLRAAMQAPSAG---------NQQPWEF----------IVLE------------- 49 (168)
T ss_dssp CHHHHCCBCCCBCS-SCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC-------------
T ss_pred hHHhhccccccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc-------------
Confidence 57999999999998 8999999999999997 8865 5689983 3433
Q ss_pred CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333 496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR 575 (650)
Q Consensus 496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~ 575 (650)
+++.++.|. .....|.++.+|+++|+++++.+.. + ..+.
T Consensus 50 -~~~~~~~l~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~--~----~~~~ 88 (168)
T 3e10_A 50 -DRENIDKLS----------------------------------NFSKYANSLKTAPLAIVLLADEEKM--K----ISEM 88 (168)
T ss_dssp -CHHHHHHHG----------------------------------GGSTTCGGGGGCSEEEEEEEEGGGC--S----SGGG
T ss_pred -CHHHHHHHH----------------------------------HhcccchhhhcCCEEEEEEEccccc--c----Ccch
Confidence 222222221 1122467788899999999986532 1 1245
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 576 LFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
...|+|+++|+|+|+|+++|||+||+|+|.. ++++++|||++ ++.+++.++||+|.++..
T Consensus 89 ~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~ 152 (168)
T 3e10_A 89 WEQDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKEMFNLKS-NIKPFCVISVGYPENSEN 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHTTCCT-TEEEEEEEEEECBSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEecccccchhHHHHHHcCcCC-CceEEEEEEEeccCCCCC
Confidence 6789999999999999999999999998875 89999999987 679999999999987753
No 30
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=99.82 E-value=7.8e-20 Score=181.51 Aligned_cols=156 Identities=8% Similarity=0.022 Sum_probs=116.8
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++.++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 3 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------- 54 (218)
T 1vfr_A 3 HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSI---------NSQPWKF----------IVIE--------- 54 (218)
T ss_dssp CHHHHHHHHCCBCSSBCTTCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred ccHHHHHHhhhhhhhcCCCCCCCHHHHHHHHHHHHhCcccC---------CCCCeEE----------EEec---------
Confidence 57899999999999998327999999999999996 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------ 565 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------ 565 (650)
+.+.++.|.+.+.. .+..+|....+++.+++++++.....
T Consensus 55 -----~~e~~~~l~~~~~~-----------------------------~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~ 100 (218)
T 1vfr_A 55 -----SDAAKQRMHDSFAN-----------------------------MHQFNQPHIKACSHVILFANKLSYTRDDYDVV 100 (218)
T ss_dssp -----SHHHHHHHHHTTSS-----------------------------SCGGGTHHHHHSSEEEEEEEESCCCHHHHHHH
T ss_pred -----CHHHHHHHHHHhcc-----------------------------chhcCchhhcCCCEEEEEEECCcccHHHHHHH
Confidence 23334444432110 01124556677888888888764210
Q ss_pred -------hc---------c------------ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCC-
Q 006333 566 -------SN---------K------------NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLT- 616 (650)
Q Consensus 566 -------~~---------y------------g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~- 616 (650)
.. + +...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~ 180 (218)
T 1vfr_A 101 LSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADEL 180 (218)
T ss_dssp HHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTT
T ss_pred HHHHHhhcccchHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHhCCCc
Confidence 00 0 112234566899999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEccccC
Q 006333 617 GSKFQSLYHFTVGGPV 632 (650)
Q Consensus 617 ~~~~~~ly~~avG~p~ 632 (650)
+ ++.+++.++||||.
T Consensus 181 ~-~~~~~~~i~lGy~~ 195 (218)
T 1vfr_A 181 K-GYECHVALAIGYHH 195 (218)
T ss_dssp T-TEEEEEEEEEECBC
T ss_pred c-cceEEEEEEeecCC
Confidence 6 67999999999998
No 31
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=99.81 E-value=2.4e-19 Score=175.66 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=118.2
Q ss_pred cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333 415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY 492 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY 492 (650)
++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.+- ++
T Consensus 2 ~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~~~-~~----- 55 (198)
T 3gfa_A 2 MISDSISKRRSIRKYKN-QSISHETIEKIIEAGINAPSSK---------NRQPWRF----------VVITEK-EK----- 55 (198)
T ss_dssp CHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEECTT-TH-----
T ss_pred hHHHHHHhchhhhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEeCh-HH-----
Confidence 47899999999999998 7999999999999997 8865 5799983 444320 00
Q ss_pred eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhc-cc--
Q 006333 493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSN-KN-- 569 (650)
Q Consensus 493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~-yg-- 569 (650)
.+.++.+++.+.....+.. + + .+..........+|.++.+|+++|+++++.+..... ++
T Consensus 56 -----~~l~~~~~~~~~~~~~~~~---------~--~--~~~~~~~~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~ 117 (198)
T 3gfa_A 56 -----ESMLKAMSKGIQNEINDNG---------L--L--PGSRQHIAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPE 117 (198)
T ss_dssp -----HHHHHHHHHHHHHHHTTCS---------S--C--GGGGGGHHHHHHHHHHHHHSSEEEEEEETTCCCTTSCCCHH
T ss_pred -----HHHHHHHHHHHhhcccccc---------c--C--hhhHHHHHHHHHHhhhhhCCCEEEEEEEcCcccchhhcccc
Confidence 0111122222211110100 0 0 011111111122467788999999999986543211 11
Q ss_pred cc-cchHHHHHHhHHHHHHHHHHHHcCCCeeee--CccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 570 VW-MYPRLFWETGVLGQVLYLEAHAVGISATGI--GCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 570 ~~-~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~I--g~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.+ .....+.|+|+++|||+|+|+++|||+||+ ++|++++++++|||+++ +++.++||||.++.
T Consensus 118 ~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l~lp~~---~~~~i~lGyp~~~~ 183 (198)
T 3gfa_A 118 ERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYRELCEWLNTDSQ---LVAAISLGYPDEEP 183 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGHHHHHHHHTCSSE---EEEEEEEECBSCCC
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeeeeecCcccCcHHHHHHhCCCcc---eEEEEEEecCCCCC
Confidence 01 123557899999999999999999999999 78999999999999973 99999999998764
No 32
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=99.80 E-value=6.6e-20 Score=182.00 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=112.8
Q ss_pred cHHHHHHhcCCCCCCCCCCC-CCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 415 TVREVVRKRRSAVDMDGVTA-IDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~-I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
.+.++|++|||+|+|++ ++ |+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 8 ~~~~~i~~RrSvR~f~~-~~~V~~e~l~~ileaa~~APS~~---------N~Qpw~f----------ivv~--------- 58 (210)
T 3qdl_A 8 KRRQLLNERHSCKMFDS-HYEFSSTELEEIAEIARLSPSSY---------NTQPWHF----------VMVT--------- 58 (210)
T ss_dssp HHHHHHHHSCBCCCBCT-TCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred HHHHHHHhchhHhhcCC-CCCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEc---------
Confidence 46679999999999998 55 99999999999997 8875 5799993 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhh--h--
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTL--S-- 566 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~--~-- 566 (650)
+++.+++|.+ ++. +|.+..+|+++++++++..... .
T Consensus 59 -----~~~~~~~l~~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~ 99 (210)
T 3qdl_A 59 -----DKDLKKQIAA----------------------------------HSYFNEEMIKSASALMVVCSLRPSELLPHGH 99 (210)
T ss_dssp -----CHHHHHHHHT----------------------------------TSGGGHHHHHHCSEEEEEEECCHHHHCC---
T ss_pred -----CHHHHHHHHH----------------------------------HHhhcchhhcCCCEEEEEEecchHHHHHHHH
Confidence 2332222221 111 4556677888777776532110 0
Q ss_pred ---c--------------------ccc----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCC-CC
Q 006333 567 ---N--------------------KNV----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLT-GS 618 (650)
Q Consensus 567 ---~--------------------yg~----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~-~~ 618 (650)
. ++. +...+...|+|+++|+|+|+|+++|||+||||+|+.++++++|||+ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~~~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~~- 178 (210)
T 3qdl_A 100 YMQNLYPESYKVRVIPSFAQMLGVRFNHSMQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERIN- 178 (210)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHHHTTSC-
T ss_pred HHccCCcHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecccCHHHHHHHhCCCCC-
Confidence 0 000 0113457899999999999999999999999999999999999999 6
Q ss_pred CceEEEEEEccccCCcC
Q 006333 619 KFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 619 ~~~~ly~~avG~p~~d~ 635 (650)
++.+++.++||||.++.
T Consensus 179 ~~~~~~~i~~Gy~~~~~ 195 (210)
T 3qdl_A 179 KPKIACLIALGKRVAEA 195 (210)
T ss_dssp CCEEEEEEEEECBSSCC
T ss_pred CceEEEEEEeeccCCCC
Confidence 67999999999998765
No 33
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=9.1e-19 Score=172.11 Aligned_cols=165 Identities=14% Similarity=0.149 Sum_probs=119.9
Q ss_pred CcHHHHHHhcCCCC-CCCCCCCCC-HHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 414 FTVREVVRKRRSAV-DMDGVTAID-RETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 414 ~~l~e~I~~RRS~R-~F~~~~~I~-~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
+++.++|++|||+| +|++ ++++ .++|.+||+++. ||++ |.|||++ ++|.
T Consensus 9 ~~~~~~i~~RrSvR~~f~~-~~v~~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~------- 61 (197)
T 3k6h_A 9 IKLLDYLRVRRSTPALQLS-EPGPSKGEIEEILRLAVRVPDHG---------KLAPWRF----------VVYR------- 61 (197)
T ss_dssp CBHHHHHTTCCCCCSTTCB-SCCCCHHHHHHHHHHHTCSCCTT---------SCCCEEE----------EEEE-------
T ss_pred HHHHHHHHhccCCCccccC-CCCCCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEc-------
Confidence 57999999999999 8998 7897 999999999997 9876 5799993 4543
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN 569 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg 569 (650)
++ .+++|.+.+...+.-.. |. +... ....+|.++.+|+++|+++++.+... ++
T Consensus 62 -------~~-~~~~l~~~~~~~~~~~~----~~------~~~~-------~~~~~~~~~~~Ap~~ivv~~~~~~~~-~~- 114 (197)
T 3k6h_A 62 -------GE-ERVRLSEAALRIALEKN----PD------LDLQ-------QQEAERTRFTRAPVVIAVISTAKPHF-KI- 114 (197)
T ss_dssp -------TH-HHHHHHHHHHHHHHHHS----SS------CCHH-------HHHHHHTTTTSSSEEEEEEECCCCCS-SS-
T ss_pred -------ch-HHHHHHHHHHHHHHhcC----CC------CCHH-------HHHHHHhhhhcCCEEEEEEEecCCCC-CC-
Confidence 22 34455544321110000 00 0000 01124678889999999998865321 11
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.....+.++|+++|||+|+|+++|||+||+|++ ++++++++|||++ ++.+++.++||||.+..
T Consensus 115 --~~~~~~~d~g~a~~nl~LaA~~~GLgt~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGyp~~~~ 179 (197)
T 3k6h_A 115 --PEWEQVMSAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSA-EEKVAGYIHIGSTTFPP 179 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCGGGTCHHHHHHHTCCS-SCEEEEEEEEEBCCCCC
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHCCCceEEecCccccCHHHHHHhCcCC-CCEEEEEEEEeCCCCCC
Confidence 112357899999999999999999999999974 6777999999997 67999999999998754
No 34
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=99.80 E-value=1.7e-19 Score=180.08 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=115.1
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 10 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------- 60 (224)
T 2hay_A 10 HQIQQALHFRTAVRVYKE-EKISDEDLALILDAAWLSPSSI---------GLEGWRF----------VVLD--------- 60 (224)
T ss_dssp HHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred HHHHHHHHhchhhhccCC-CCCCHHHHHHHHHHHHhCcccc---------CCCCeEE----------EEEC---------
Confidence 578899999999999996 8999999999999986 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhh-hc--
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTL-SN-- 567 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~-~~-- 567 (650)
+.+.++.|. .++. +|....+++.+++++++.+... ..
T Consensus 61 -----~~~~~~~l~----------------------------------~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~ 101 (224)
T 2hay_A 61 -----NKPIKEEIK----------------------------------PFAWGAQYQLETASHFILLIAEKHARYDSPAI 101 (224)
T ss_dssp -----CHHHHHHHG----------------------------------GGCTTCHHHHHHCSEEEEEEEESCCCTTSHHH
T ss_pred -----CHHHHHHHH----------------------------------HHHhccccccCCCCeEEEEEeccccccCHHHH
Confidence 222222221 1111 3445566777888887754200 00
Q ss_pred ----------------------------------cccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh
Q 006333 568 ----------------------------------KNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL 613 (650)
Q Consensus 568 ----------------------------------yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L 613 (650)
+....+.....++|+++|+|+|+|+++|||+||||+|++++|+++|
T Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l 181 (224)
T 2hay_A 102 KNSLLRRGIKEGDGLNSRLKLYESFQKEDMDMADNPRALFDWTAKQTYIALGNMMMTAALLGIDTCPIEGFHYDKVNHIL 181 (224)
T ss_dssp HHHHHHTTCCSSSSHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcCHHHHHHHH
Confidence 0111234568999999999999999999999999999999999999
Q ss_pred ---C-CCCCCceEEEEEEccccCCcC
Q 006333 614 ---G-LTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 614 ---g-L~~~~~~~ly~~avG~p~~d~ 635 (650)
| ||.+++.+++.++||||.++.
T Consensus 182 ~~~~~lp~~~~~~~~~i~lGyp~~~~ 207 (224)
T 2hay_A 182 AKHNVIDLEKEGIASMLSLGYRLRDP 207 (224)
T ss_dssp HHTTSSCTTTEEEEEEEEEECBSSCC
T ss_pred HhcCCCCcccceEEEEEEEeccCCcc
Confidence 9 992367999999999998764
No 35
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=99.80 E-value=2.1e-19 Score=178.50 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=107.2
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++.++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 4 m~~~~~i~~RrS~R~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~--------- 55 (217)
T 2h0u_A 4 EQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSI---------GLEPWKM----------LLLK--------- 55 (217)
T ss_dssp HHHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EECC---------
T ss_pred hHHHHHHHHhHHHHhcCCCCCCCHHHHHHHHHHHhhCCccc---------CCCCeEE----------EEEe---------
Confidence 56889999999999999327999999999999986 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhhh----
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTLS---- 566 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~~---- 566 (650)
+.+.++.|.+ ++. +|....+|+.+++++++.+....
T Consensus 56 -----~~~~~~~l~~----------------------------------~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~ 96 (217)
T 2h0u_A 56 -----NERMKEDLKP----------------------------------MAWGALFGLEGASHFVIYLARKGVTYDSDYV 96 (217)
T ss_dssp -----C------------------------------------------------------CCEEEEEEEESCCCTTCHHH
T ss_pred -----CHHHHHHHHH----------------------------------HHhcChhhhcCCCEEEEEEEcCCcccchHHH
Confidence 1222222221 111 45566778888888887543100
Q ss_pred --c------------------c------------ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh-
Q 006333 567 --N------------------K------------NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL- 613 (650)
Q Consensus 567 --~------------------y------------g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L- 613 (650)
. + +...+.....++|+++|+|+|+|+++|||+||||+|++++++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~ 176 (217)
T 2h0u_A 97 KKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLE 176 (217)
T ss_dssp HHHHHHTTCCCCCTTSHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcCcCHHHHHHHHh
Confidence 0 0 000123466899999999999999999999999999999999999
Q ss_pred --C-CCCCCceEEEEEEccccCCcC
Q 006333 614 --G-LTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 614 --g-L~~~~~~~ly~~avG~p~~d~ 635 (650)
| |+.+++.+++.++||||.++.
T Consensus 177 ~~~~l~p~~~~~~~~i~lGy~~~~~ 201 (217)
T 2h0u_A 177 EKGYLNTAEFGVSVMACFGYRNQEI 201 (217)
T ss_dssp HHTSCCTTTEEEEEEEEEECBSSCC
T ss_pred hcCCCCccccceEEEEEeeccCCCC
Confidence 9 843367999999999998664
No 36
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=99.80 E-value=9e-19 Score=170.79 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=116.1
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
+++.++|++|||+|+|++ ++|+.++|.+||+++. ||+. |.|||++ ++|.
T Consensus 5 ~~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qpw~f----------~vv~--------- 55 (190)
T 3ek3_A 5 NEVLETIKARRSVRAYDR-KQIPADDLNAILEAGAYAPSGM---------HYETWHF----------TAVC--------- 55 (190)
T ss_dssp CHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC---------
T ss_pred HHHHHHHHhchhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEE---------
Confidence 468999999999999998 8999999999999997 8865 5799993 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+.+.++.|.+.+...+. ..++..........++.++.+|+++++++++.+.
T Consensus 56 -----~~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Ap~~i~~~~~~~~-------- 106 (190)
T 3ek3_A 56 -----NTVKLEELNERIKGAFA----------------KSDDKHLRERGHSETYCCYYHAPTLVIVSNEPKQ-------- 106 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHH----------------TCCCHHHHHHHTCSSCCTTTTCSEEEEEEECSSS--------
T ss_pred -----CHHHHHHHHHHHHHHHH----------------hcccHHHHHHhhccccchhcCCCeEEEEEecCCC--------
Confidence 33344455544321110 0011110011111223467789999988877532
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc----chHH---HHhHhCCCCCCceEEEEEEccccCCc
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF----FDDP---VHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f----~dd~---v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
.....|+|+++|||+|+|+++|||+||+|++ ++++ +++.|||++ ++.+++.++||||.++
T Consensus 107 --~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~l~lGyp~~~ 173 (190)
T 3ek3_A 107 --WWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVPE-NHKVYGCVALGYKAEG 173 (190)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHTTCEEEEECTTTTTTTSHHHHHHHHHHTCCT-TCEEEEEEEEECBCTT
T ss_pred --CccHhHHHHHHHHHHHHHHHCCCceEEeccchhhccChhHHHHHHHcCCCC-CcEEEEEEEEeccCCC
Confidence 3457999999999999999999999999974 4444 899999997 5799999999999875
No 37
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=99.80 E-value=3.4e-19 Score=177.68 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=113.3
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
..+.++|++|||+|+|++.++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 14 ~~~~~~i~~RrSvR~f~~~~~V~~e~l~~il~aa~~APS~~---------N~Qpw~f----------~vv~--------- 65 (218)
T 3bem_A 14 AEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAF---------NLQHTKY----------VTVL--------- 65 (218)
T ss_dssp HHHHHHHHHCCCCSCCCSSCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred HHHHHHHHhCchhhccCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEC---------
Confidence 36889999999999998327999999999999997 8865 5799983 4443
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh--h---
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL--S--- 566 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~--~--- 566 (650)
+.+.++.|.+ ++.+|....+++.+++++++.+... .
T Consensus 66 -----~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~ 106 (218)
T 3bem_A 66 -----DQDVKEKLKQ----------------------------------AANGQYKVVSSSAVLLVLGDKQAYQQAADIY 106 (218)
T ss_dssp -----CHHHHHHHHH----------------------------------TTTTCTHHHHSSEEEEEEEETTGGGGHHHHH
T ss_pred -----CHHHHHHHHH----------------------------------hccCCCccCCCCeEEEEEecchhhhhhHHHH
Confidence 2222222222 2234555667788888887754310 0
Q ss_pred ----c-------------------c----ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCC
Q 006333 567 ----N-------------------K----NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSK 619 (650)
Q Consensus 567 ----~-------------------y----g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~ 619 (650)
. | ..........++|+++|+|+|+|+++|||+||+|+|++++|+++|||++ +
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~ 185 (218)
T 3bem_A 107 EGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLSAMMFMLSAAAAGWDTCPMIGFDAEAVKRILNIDD-Q 185 (218)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-T
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCC-C
Confidence 0 0 0111235678999999999999999999999999999999999999997 6
Q ss_pred ceEEEEEEccccC
Q 006333 620 FQSLYHFTVGGPV 632 (650)
Q Consensus 620 ~~~ly~~avG~p~ 632 (650)
+.+++.++||||+
T Consensus 186 ~~~~~~i~lGy~~ 198 (218)
T 3bem_A 186 FEVVMMITIGKEK 198 (218)
T ss_dssp EEEEEEEEEECCC
T ss_pred ceeEEEEEecCCc
Confidence 7899999999994
No 38
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=99.80 E-value=6.2e-19 Score=177.13 Aligned_cols=174 Identities=15% Similarity=0.172 Sum_probs=122.7
Q ss_pred CcHHHHHHhcCCCC-CCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 414 FTVREVVRKRRSAV-DMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 414 ~~l~e~I~~RRS~R-~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
+++.++|++|||+| +|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 24 ~~~~~~i~~RrSvR~~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~------- 76 (230)
T 2isk_A 24 AAVYRAIETRRDVRDEFLP-EPLSEELIARLLGAAHQAPSVG---------FMQPWNF----------VLVRQ------- 76 (230)
T ss_dssp HHHHHHHHHCCBCSSCCCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEECC-------
T ss_pred HHHHHHHHhhhccccccCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEcC-------
Confidence 57899999999999 9998 6999999999999986 8865 5799983 44432
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SNKN 569 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~yg 569 (650)
.+.++.|.+.+... ....++ .+ .++... ......+..+.++++.++++++..... ..|+
T Consensus 77 -------~~~~~~l~~~~~~~----~~~~~~------~~-~~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~ 136 (230)
T 2isk_A 77 -------DETREKVWQAFQRA----NDEAAE------MF-SGERQA--KYRSLKLEGIRKAPLSICVTCDRTRGGAVVLG 136 (230)
T ss_dssp -------HHHHHHHHHHHHHH----HHHHHH------TS-CHHHHH--HHHHSCCCCTTTSSEEEEEEEETTTTCSSCTT
T ss_pred -------HHHHHHHHHHHHHH----HHHHhh------hc-CHHHHH--HHHHHhhhhhhcCCeEEEEEEecccccccccC
Confidence 22223333321100 000000 00 111100 011123345678899998888865432 3456
Q ss_pred cccch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 570 VWMYP-RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 570 ~~~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.+.++ ..++++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.++.
T Consensus 137 ~~~~~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~v~~~L~lp~-~~~~~~~i~lGy~~~~~ 202 (230)
T 2isk_A 137 RTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPD-HVEIVAWLCLGFVDRLY 202 (230)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHHHTEEEEECCCSCHHHHHHHHTCCT-TEEEEEEEEEEECSEEC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHCCCceeeecccCHHHHHHHhCCCC-CceeEEEEEEeccCccc
Confidence 66654 5679999999999999999999999999999999999999997 67899999999998754
No 39
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=99.80 E-value=1.7e-18 Score=174.08 Aligned_cols=177 Identities=14% Similarity=0.232 Sum_probs=120.6
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.|++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 6 ~m~~~~~i~~RRSvR~f~~-~pV~~e~l~~il~aA~~APS~~---------N~Qpw~f----------iVv~-------- 57 (230)
T 3gr3_A 6 PIDIFQSILSRKSIRAFTD-QPVTQETIREILKLAARAPSGT---------NLQPWQV----------IVLT-------- 57 (230)
T ss_dssp CCBHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEC--------
T ss_pred hhHHHHHHHhCeehhccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEe--------
Confidence 4789999999999999998 7999999999999997 8875 5799993 4543
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccc-----------------------cccccHHHHHhhhcccccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYE-----------------------LARGDCQQLAKGLSCHQDI 547 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~-----------------------l~~gd~r~~~~~l~~~Q~~ 547 (650)
+..++.|++.+...+.-. ...+++ +..+. +...|....... ...+..
T Consensus 58 -------~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 127 (230)
T 3gr3_A 58 -------GKILQKVGQELSQLVLSG-IKGERE-YHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQ-KAKNFL 127 (230)
T ss_dssp -------HHHHHHHHHHHHHHHHTT-CCCCCS-SCCSCSSCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHHGGG
T ss_pred -------ChHHHHHHHHHHHHHhcC-CCcccc-ccccchhhhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHhhhh
Confidence 122334444333221111 001110 00000 001111111111 111224
Q ss_pred cccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEE
Q 006333 548 AGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYH 625 (650)
Q Consensus 548 ~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~ 625 (650)
+.+||++|+++++.+. + ...+.|+|+++|||+|+|+++|||+||+|+|. +++++++|||++ ++.+++.
T Consensus 128 ~~~AP~~i~v~~~~~~-----~----~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~ 197 (230)
T 3gr3_A 128 FYGAPVGLLFTIDHDM-----E----MGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPS-DRHIICG 197 (230)
T ss_dssp GGGCSEEEEEEEETTC-----C----THHHHHHHHHHHHHHHHHHTTTCEEEEEGGGGGGHHHHHHHHTCCT-TEEEEEE
T ss_pred hcCCCEEEEEEecCCc-----c----chHHHHHHHHHHHHHHHHHHCCCceeeecccccchHHHHHHcCcCC-CceEEEE
Confidence 6788999888887431 1 24578999999999999999999999999987 789999999997 6799999
Q ss_pred EEccccCCcCcc
Q 006333 626 FTVGGPVVDRRI 637 (650)
Q Consensus 626 ~avG~p~~d~r~ 637 (650)
++||||.++...
T Consensus 198 i~lGyp~~~~~~ 209 (230)
T 3gr3_A 198 MALGYRDMNAPE 209 (230)
T ss_dssp EEEECBCTTCGG
T ss_pred EEEeccCCcccc
Confidence 999999887643
No 40
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A
Probab=99.79 E-value=6.6e-19 Score=170.04 Aligned_cols=163 Identities=16% Similarity=0.151 Sum_probs=115.7
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++ .+|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 1 m~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~aPS~~---------n~qpw~~----------~vv~~-------- 52 (183)
T 3bm1_A 1 MDALELLINRRSASRLAE-PAPTGEQLQNILRAGMRAPDHK---------SMQPWHF----------FVIEG-------- 52 (183)
T ss_dssp CBHHHHHHHCCCCCCEES-CCCCHHHHHHHHHHHTTSCCTT---------SCCCCEE----------EEEET--------
T ss_pred CcHHHHHHhCcChhhcCC-CCcCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEch--------
Confidence 468899999999999997 7999999999999997 8875 5799983 44432
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
. .++.|.+.....+. ..++.. ..+...+.+..+++++++++++.+... ..
T Consensus 53 ------~-~~~~l~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~----~~ 102 (183)
T 3bm1_A 53 ------E-GRERFSAVLEQGAI-----------------AAGSDD--KAIDKARNAPFRAPLIITVVAKCEENH----KV 102 (183)
T ss_dssp ------H-HHHHHHHHHHHHHH-----------------HHTCCH--HHHHHHHHGGGGSSEEEEEEECCCSCS----SS
T ss_pred ------h-HHHHHHHHHHHHHh-----------------ccCCCH--HHHHHHHhhhccCCEEEEEEEecCCCC----CC
Confidence 1 23334432211000 000000 001112345678898888888754311 12
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
.++..++++|+++|+|+|+|+++|||+||+++| ++++++++|||++ ++.+++.++||+|.++.
T Consensus 103 ~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~~Gy~~~~~ 167 (183)
T 3bm1_A 103 PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCRE-QDKIVGFLYLGTPQLKA 167 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHHHTTCCT-TCEEEEEEEEEEECC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHHHhCCCC-CCEEEEEEEeecCCCCC
Confidence 344567899999999999999999999999988 4789999999997 57899999999998653
No 41
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=99.79 E-value=2.4e-19 Score=177.68 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=114.9
Q ss_pred CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
|++.++|++|||+|+|++.++|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~--------- 52 (217)
T 1icr_A 1 MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSST---------NSQPWHF----------IVAS--------- 52 (217)
T ss_dssp -CHHHHHHHCCBCSCBCTTCCCCHHHHHHHHHHHHHCCCGG---------GCCCEEE----------EEEC---------
T ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCcccc---------CCCCeEE----------EEeC---------
Confidence 46889999999999999327999999999999996 8875 5799983 4543
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh---h--
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL---S-- 566 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~---~-- 566 (650)
+.+.++.|.+.+ .+. ...+|.+..+++.+++++++.+... .
T Consensus 53 -----~~e~~~~l~~~~----------------------~~~-------~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~ 98 (217)
T 1icr_A 53 -----TEEGKARVAKSA----------------------AGN-------YVFNERKMLDASHVVVFCAKTAMDDVWLKLV 98 (217)
T ss_dssp -----SHHHHHHHHTTS----------------------CGG-------GGGGHHHHHHSSEEEEEEEESSCCHHHHHHH
T ss_pred -----CHHHHHHHHHHh----------------------hhh-------hhcChhhhcCCCeEEEEEeCCccchHHHHHH
Confidence 223333333211 000 1124566677888888888754210 0
Q ss_pred -----ccc--------------------------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC
Q 006333 567 -----NKN--------------------------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL 615 (650)
Q Consensus 567 -----~yg--------------------------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL 615 (650)
+.| ...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~l 178 (217)
T 1icr_A 99 VDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGL 178 (217)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHHTH
T ss_pred HHHHHhhccCCHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCC
Confidence 001 1122345679999999999999999999999999999999999999
Q ss_pred C-CCCceEEEEEEccccCC
Q 006333 616 T-GSKFQSLYHFTVGGPVV 633 (650)
Q Consensus 616 ~-~~~~~~ly~~avG~p~~ 633 (650)
+ + ++.+++.++||||.+
T Consensus 179 p~~-~~~~~~~i~lGy~~~ 196 (217)
T 1icr_A 179 KEK-GYTSLVVVPVGHHSV 196 (217)
T ss_dssp HHH-TEEEEEEEEEECBCT
T ss_pred Ccc-CCceEEEEEeccCCc
Confidence 8 6 578999999999974
No 42
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}
Probab=99.78 E-value=1.3e-18 Score=169.24 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=116.5
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 7 ~m~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~~------- 59 (189)
T 2i7h_A 7 YTSIANVIKERRSVRTFTD-KAVEKDLLIELLNDATWAPNHK---------HREPWNC----------KLYIG------- 59 (189)
T ss_dssp CCCHHHHHHHCCBCCCCCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEEG-------
T ss_pred HHHHHHHHHhcccHhhhCC-CCcCHHHHHHHHHHHHhCCCCC---------CcCCeEE----------EEECc-------
Confidence 3679999999999999998 7999999999999997 8865 5799983 44432
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV 570 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~ 570 (650)
. .++.|.+.+...+ ...+... .....+.++.++++.++++++.+.. +
T Consensus 60 -------~-~~~~l~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~~ap~~i~~~~~~~~~--~--- 106 (189)
T 2i7h_A 60 -------E-GRKKLVDAVLNSF-----------------TEEERAK---RGKILSDRFLSTPAQIVVYMNEDPR--Q--- 106 (189)
T ss_dssp -------G-GHHHHHHHHHHTS-----------------CHHHHHH---HHHHHHHHHHTSSEEEEEEEECCSS--H---
T ss_pred -------H-HHHHHHHHHHHHH-----------------hccCchH---HHHHHHhHHhcCCEEEEEEEecCCC--C---
Confidence 2 2344444322100 0000000 0011244667889888888875421 1
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc-c-chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGC-F-FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~-f-~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..+...+.++|+++|+|+|+|+++|||+||+|+ | ++++++++|||++ ++.+++.++||||.++.
T Consensus 107 ~~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~ 172 (189)
T 2i7h_A 107 IQRDEDYAATCAFMQNFQLLAWERGLGCVWKSGGLNYNPLFIEGIGLTR-GQRIVGILHIGYFDKAP 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECSGGGGCHHHHHHTTCCT-TEEEEEEEEEEECSSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHCCCeeEEecCCccCCHHHHHHhCcCC-CCeEEEEEEEeCCCCCC
Confidence 123345688999999999999999999999986 5 5689999999997 67899999999998653
No 43
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Probab=99.78 E-value=2.6e-18 Score=170.64 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=115.6
Q ss_pred CCcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 413 GFTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
.+++.++|++|||+|+|++ . +|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 12 ~m~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~~------ 65 (210)
T 2r01_A 12 IMKLRELVARSRSIRRFDE-HVAVNDATLRDLVELVCYTPSAA---------NRQLLRF----------LPVTG------ 65 (210)
T ss_dssp --CHHHHHHHCCBCCCBCT-TSCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEEH------
T ss_pred cCcHHHHHHhCceeeccCC-CCCCCHHHHHHHHHHHHhCCCCC---------CCCCEEE----------EEEEC------
Confidence 3689999999999999998 6 999999999999997 8865 5799983 44432
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCc-eEEEEeeecchhhhcc
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGC-FSLGMVAHFEPTLSNK 568 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa-~~l~~~a~~~~~~~~y 568 (650)
.+.+ +.+.....|... + -...|.+..+++ ++|+++++.+..
T Consensus 66 --------~~~~----~~l~~~~~~~~~-----------~-----------~~~~~~~~~~ap~~~ivv~~~~~~~---- 107 (210)
T 2r01_A 66 --------ADMS----DKVFPCLKWAGY-----------L-----------EDWPGPEPGERPAAALVMLCRNEDL---- 107 (210)
T ss_dssp --------HHHH----HTTGGGBCCCTT-----------C-----------TTCCSCCTTSSCSEEEEEEEEGGGG----
T ss_pred --------HHHH----HHHHHHHhhhhh-----------h-----------hhhcccchhcCCcEEEEEEecCccC----
Confidence 1111 111111112110 0 011345566776 677777775421
Q ss_pred ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCccccC
Q 006333 569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSL 640 (650)
Q Consensus 569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~~~ 640 (650)
...++++|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||+|.++......
T Consensus 108 -----~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~~~~~~ 173 (210)
T 2r01_A 108 -----PGAACDSGIAAQTIMLGAAEKELGGCIVAAIDRERLMASLGIPD-AWTVLLVIALGKPAETVVIDQI 173 (210)
T ss_dssp -----GGTHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TEEEEEEEEEECBCSCEEEEEE
T ss_pred -----cchHHHHHHHHHHHHHHHHHCCCCEeeEcccCHHHHHHHcCcCC-CceEEEEEEEeCCCCCCCcCCC
Confidence 23479999999999999999999999999999999999999997 6789999999999887765443
No 44
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*
Probab=99.78 E-value=2.4e-18 Score=176.44 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=118.9
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++ .+|+.++|.+||+++. ||++ |.|||++ ++|.
T Consensus 54 ~~~~~e~i~~RRSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------ivv~-------- 105 (259)
T 3gb5_A 54 SQEFYELLNKRRSVRFISS-EHVPMEVIENVIKAAGTAPSGA---------HTEPWTF----------VVVK-------- 105 (259)
T ss_dssp HHHHHHHHHTCCCCSCBCC-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred hHHHHHHHHHCcchhhcCC-CCCCHHHHHHHHHHHHHCCCcC---------CCCCeEE----------EEEe--------
Confidence 3678999999999999997 8999999999999997 8865 5799993 4544
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc-HHHHHhh--hcccccccccCceEEEEeeecchhhhc
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD-CQQLAKG--LSCHQDIAGDGCFSLGMVAHFEPTLSN 567 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd-~r~~~~~--l~~~Q~~~~~aa~~l~~~a~~~~~~~~ 567 (650)
+.+.+++|.+.+.... +. . +.-..|+ ....... ....+.++.+|+++|+++++..... .
T Consensus 106 ------~~~~~~~l~~~~~~~~--~~--------~-~~~~~g~~~~~~l~~~~~~~~~~~~~~AP~lIvv~~~~~~~~-~ 167 (259)
T 3gb5_A 106 ------DPDMKHKIREIIEEEE--EI--------N-YMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFA-A 167 (259)
T ss_dssp ------CHHHHHHHHHHHHHTC--CC-------------------------------CTHHHHSSEEEEEEEEC------
T ss_pred ------CHHHHHHHHHHHHhhh--hh--------h-hhhhcchhhHHHHHHHHHHHhhHHhcCCCEEEEEEEeccccc-c
Confidence 3344455555432110 00 0 0000010 0000000 1123566778999999998864322 1
Q ss_pred cccc-cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333 568 KNVW-MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD-DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR 636 (650)
Q Consensus 568 yg~~-~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-d~v~e~LgL~~~~~~~ly~~avG~p~~d~r 636 (650)
.|.. ...+..+++|+++|+|+|+|+++|||+|++|+|+. ++|+++|||++ ++.+++.++||||.++..
T Consensus 168 ~g~~~~~~~~~~dagiA~~nllLAA~alGLGs~~~g~~~~~~~vr~~LglPe-~~~~v~~iaiGyp~e~~~ 237 (259)
T 3gb5_A 168 NGKKKVHYYNEISVSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPS-HEKLLVLLPVGYPSRDAT 237 (259)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHTTCBCCCBCCGGGHHHHHHHTTCCT-TEEEEEEEEEBCBCTTCC
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHCCCeEEEecCcCcHHHHHHhcCcCC-CCEEEEEEEecCcCCCCC
Confidence 1221 12245689999999999999999999999999986 79999999998 679999999999988764
No 45
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1
Probab=99.77 E-value=1.4e-18 Score=171.39 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=114.0
Q ss_pred CcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 414 FTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 414 ~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
+++.++|++|||+|+|++ + +|+.++|.+||+++ . ||++ |.|||++ ++|.+
T Consensus 2 ~~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~~APS~~---------n~Qpw~f----------~vv~~------ 55 (208)
T 2ifa_A 2 SNFLDLQKQRRSIYALGK-TVDLSKAELVALIQNAIKQAPSAF---------NSQTSRA----------LVLFG------ 55 (208)
T ss_dssp CCHHHHHHHCCCCCCEES-CCSSCHHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEEH------
T ss_pred chHHHHHHhhhhHhccCC-CCCCCHHHHHHHHHHHHhcCCCcc---------ccCCeEE----------EEEEC------
Confidence 368899999999999998 6 99999999999998 5 8865 5799983 45442
Q ss_pred eeeeecCCcchhhHHH----HHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh
Q 006333 490 GLYFLVRNEDHLGELK----KAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL 565 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~----~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~ 565 (650)
++.++.+. +.+... .....+...... .....+++..++++++.+...
T Consensus 56 --------~~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~----~~~~~~a~~~i~~~~~~~~~~ 106 (208)
T 2ifa_A 56 --------QDSQDFWNKIAYSELEKV-----------------TPAEAFAGTKAK----LESFAAGVGTILLFEDQAVVR 106 (208)
T ss_dssp --------HHHHHHHHTHHHHHHHTT-----------------SCHHHHHHHHHH----HHHHHTSSEEEEEEEEHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhhc-----------------CChhhhhhhhHH----HHHHhhcceEEEEEecHHHHH
Confidence 22111111 011100 000111100000 012456788888887754311
Q ss_pred ------hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 566 ------SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 566 ------~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..|++........++|+++|+|+|+|+++|||+||++ +|++++|+++||||+ ++.+++.++||+|.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGy~~~~~ 183 (208)
T 2ifa_A 107 NLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEKYDLPT-NWKMRAQIPFGSIEAPA 183 (208)
T ss_dssp HHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEESSCC
T ss_pred HHHHhCcccccccchhHHHHHHHHHHHHHHHHHHCCCccchhcccccchHHHHHHcCCCc-cceEEEEEEeeccCCCC
Confidence 1233333355679999999999999999999999887 678899999999997 67999999999998764
No 46
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=99.75 E-value=1.5e-17 Score=162.56 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=111.5
Q ss_pred CCcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333 413 GFTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK 489 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~ 489 (650)
.+++.++|++|||+|+|++ + +|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 5 ~m~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~------ 58 (200)
T 1ywq_A 5 TTNLKEAIVNRRSIRKVTK-NDAITKERIEEVLKTALHAPTSF---------NMQSGRM----------VVLMD------ 58 (200)
T ss_dssp TSCHHHHHHHCCCCCCEEC-CTTSCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEEH------
T ss_pred HHHHHHHHHhhhhHHhhCC-CCCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEeC------
Confidence 4689999999999999998 6 999999999999997 8865 5799983 45542
Q ss_pred eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccc-cHHHHHhhhcccccccccCceEEEEeeecchhh---
Q 006333 490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARG-DCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL--- 565 (650)
Q Consensus 490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~g-d~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~--- 565 (650)
++ +..|...+... +..+..+ .+...... .+. ..+++..++++++.....
T Consensus 59 --------~~-~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~~~ 111 (200)
T 1ywq_A 59 --------GE-HEKFWDIVKET--------------LRARVPAENFEATVER---LKG-FHAGVGTVLFFEDQATVEKMQ 111 (200)
T ss_dssp --------HH-HHHHHHHHHHH--------------HHHHSCHHHHHHHHGG---GHH-HHTSSEEEEEEEEHHHHHHHH
T ss_pred --------HH-HHHHHHHHHHH--------------HHhcCChhhhhhhHHH---HHH-HhhcceEEEEecCchHHHHHH
Confidence 11 11111111000 0000001 11110011 111 223455555555543211
Q ss_pred ---hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 566 ---SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 566 ---~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..++.........++|+++|+|+|+|+++|||+|+++ +|++++++++|||++ ++.+++.++||||.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~ 185 (200)
T 1ywq_A 112 ENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVDAEVKETWNIPA-EWSLVGQMPFGEPNEQP 185 (200)
T ss_dssp HHCGGGTTTHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEECSCC
T ss_pred HhCccccccccchHHHhhHHHHHHHHHHHHHCCCccchhhcccccHHHHHHHhCCCC-CceEEEEEEeeccCCCC
Confidence 1122333345678999999999999999999999866 788899999999997 67899999999998764
No 47
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=99.75 E-value=1.1e-17 Score=163.67 Aligned_cols=169 Identities=9% Similarity=0.062 Sum_probs=110.1
Q ss_pred cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
++.++|++|||+|+|+++.+ +.++|.+||+++ . ||++ |.|||++ ++|.+
T Consensus 2 ~~~~~i~~RrSvR~f~~~~~-~~e~l~~il~aa~~~APS~~---------n~Qpw~f----------~vv~~-------- 53 (202)
T 2wqf_A 2 SFIKSLENRRTIYALGRNVQ-DEEKVIETIKEAVRFSPTAF---------NSQTGRL----------LILTG-------- 53 (202)
T ss_dssp CHHHHHHHCCBCCCEECCCS-CHHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEEH--------
T ss_pred hHHHHHHhhhhHHhcCCCCC-CHHHHHHHHHHHHHhCCCcc---------CCCCeEE----------EEEEC--------
Confidence 57899999999999998338 999999999988 5 8865 5799993 55542
Q ss_pred eeecCCcchhhHHHH-----HhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-
Q 006333 492 YFLVRNEDHLGELKK-----AVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL- 565 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~-----~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~- 565 (650)
++ +..|.+ .+.. ..+... +....+..... .+....+++..++++++.....
T Consensus 54 ------~~-~~~l~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ 110 (202)
T 2wqf_A 54 ------DA-QDKLWDEIVAPELKA-AMEAQG-----------VPESAWDNTRA----KLDGFKAAFGTILFFEDQAVVKN 110 (202)
T ss_dssp ------HH-HHHHHHHTHHHHHHH-HHHC-----------------------C----HHHHHHTSSEEEEEEEEHHHHHH
T ss_pred ------hH-HHHHHHHHHHHHHhh-cccccc-----------CCHHHHHhhHH----HHHHHHhcCCeEEEEeCchHHHH
Confidence 11 111221 1100 000000 00000000000 0011234565666665543221
Q ss_pred -----hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333 566 -----SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR 635 (650)
Q Consensus 566 -----~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~ 635 (650)
..|+...++....++|+++|||+|+|+++|||+||++ +|++++++++|||++ ++.+++.++||+|.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~ 186 (202)
T 2wqf_A 111 LQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHYNPLIDEAVAKEWNLPE-SWKLRGQLVFGSIEAPA 186 (202)
T ss_dssp HHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEECSCC
T ss_pred HHhhccchhhcchhhhHHHHHHHHHHHHHHHHHCCCccchhhcCcccHHHHHHHhCcCc-cceEEEEEEecCCCCCC
Confidence 1233444456788999999999999999999999998 688999999999997 67999999999998764
No 48
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*
Probab=99.73 E-value=5.5e-17 Score=162.76 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=115.3
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG 490 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G 490 (650)
.+++.++|++|||+|+|++ ++|+.++|.+||+++. ||++ |.|||++ ++|.+
T Consensus 16 ~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~------- 68 (235)
T 2wzv_A 16 AQAAERLIKGRRAVRAFRP-DEVPEETMRAVFELAGHAPSNS---------NTQPWHV----------EVVSG------- 68 (235)
T ss_dssp HHHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCCEE----------EEECH-------
T ss_pred HHHHHHHHHhCceecCCCC-CCCCHHHHHHHHHHHHhCCccc---------CCCCcEE----------EEecC-------
Confidence 3578999999999999998 7999999999999997 8865 5799983 45432
Q ss_pred eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccc-ccccHHH----------------------HHhhhccccc-
Q 006333 491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYEL-ARGDCQQ----------------------LAKGLSCHQD- 546 (650)
Q Consensus 491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l-~~gd~r~----------------------~~~~l~~~Q~- 546 (650)
.+ ++.|.+.+... .|.+.. ++. +..+.- ..+.+.. .... ..+.
T Consensus 69 -------~~-~~~l~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 135 (235)
T 2wzv_A 69 -------AA-RDRLAEALVTA-HAEERV-TVD-FPYREGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGY--NTESL 135 (235)
T ss_dssp -------HH-HHHHHHHHHHH-HHTTCC-BCS-SCCCTTSSCHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH--HHHHH
T ss_pred -------HH-HHHHHHHHHHH-HHhccc-Ccc-ccccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHH--Hhhcc
Confidence 22 34444433211 111110 111 100000 0011110 0000 0111
Q ss_pred ccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEE
Q 006333 547 IAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLY 624 (650)
Q Consensus 547 ~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly 624 (650)
.+.+++++++++++.+. ....+.++|+++|||+|+|+++|||+||||+| ++++++++||| + ++.+++
T Consensus 136 ~~~~ap~~i~~~~~~~~---------~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~~~v~~~L~l-~-~~~~~~ 204 (235)
T 2wzv_A 136 RFYGAPHVAMLFAPNNT---------EARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAELGV-E-NRKLLM 204 (235)
T ss_dssp TGGGCSEEEEEEEETTC---------CHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGBHHHHHHHHTC-C-SEEEEE
T ss_pred eecCCCEEEEEecCccc---------ccccHHHHHHHHHHHHHHHHHCCCccchhhhhccchHHHHHHcCC-C-CcceEE
Confidence 24568887777766321 23567999999999999999999999999986 67889999999 6 678999
Q ss_pred EEEccccCCcCc
Q 006333 625 HFTVGGPVVDRR 636 (650)
Q Consensus 625 ~~avG~p~~d~r 636 (650)
.++||||.++..
T Consensus 205 ~i~lGy~~~~~~ 216 (235)
T 2wzv_A 205 GISFGYADDTAA 216 (235)
T ss_dssp EEEEECBCTTCG
T ss_pred EEEecCCCCccc
Confidence 999999987654
No 49
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}
Probab=99.71 E-value=8.9e-16 Score=162.75 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=61.0
Q ss_pred cccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-----HHHHhHhCCCCCCceE
Q 006333 548 AGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD-----DPVHEVLGLTGSKFQS 622 (650)
Q Consensus 548 ~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-----d~v~e~LgL~~~~~~~ 622 (650)
..+++.+++++.+.+ -+..++++|++.|+++|+|+++||++||++.+.. +.|+++||+++ .+
T Consensus 230 ~~~ap~~~vl~~~~d----------~~~~~~d~G~a~q~~lLaAt~~GL~t~~~~~~~e~~~~~~~vr~~lg~p~---~~ 296 (330)
T 2ymv_A 230 NNDAATIVVLSTDGY----------SREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDA---CP 296 (330)
T ss_dssp SSCCCEEEEEEESCC----------SHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGSSHHHHHHHHTTSSTTC---EE
T ss_pred ccCCCeEEEEEeCCC----------CHHHHHHHHHHHHHHHHHHHHCChhhccchhhhhhhHHHHHHHHHhCCCC---ce
Confidence 457777777766532 1355799999999999999999999999998654 78999999985 48
Q ss_pred EEEEEccccCCc
Q 006333 623 LYHFTVGGPVVD 634 (650)
Q Consensus 623 ly~~avG~p~~d 634 (650)
++.+.|||+.++
T Consensus 297 ~~~i~lGy~~~~ 308 (330)
T 2ymv_A 297 QVLVRIGLAPAL 308 (330)
T ss_dssp EEEEEEEBCCTT
T ss_pred EEEEEeecCCCC
Confidence 999999999875
No 50
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=99.63 E-value=4.8e-16 Score=152.94 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=104.8
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||++||+....+.+. .+..
T Consensus 25 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~~----------------~l~~ 72 (200)
T 2fre_A 25 AFDGSPMPKEHLLTILDA----------------AHWAPSASNHQPWRFVYAHKDSEDWP----------------LFVE 72 (200)
T ss_dssp CBCCCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEEETTSTTHH----------------HHHH
T ss_pred ccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCEEEEEEeCcHHHHH----------------HHHH
Confidence 467889999999999998 58899999999999998876523221 1111
Q ss_pred -CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 225 -IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 225 -~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
.... .+.++.+||++|+++++..+....+..+.+++..+|+|+++||++|+|+++|||+|++++|+++.++++|||
T Consensus 73 ~~~~~---~~~~~~~ap~~iv~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~l~l 149 (200)
T 2fre_A 73 LLMEG---NQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDI 149 (200)
T ss_dssp TBCHH---HHHHHTTSSEEEEEEEESEEECTTCCEEECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHTTC
T ss_pred HHHhh---hhHHHhcCCEEEEEEEecccccCcccccccchhhHHHHHHHHHHHHHHHHCCcceeeEcccCHHHHHHHcCC
Confidence 1000 123467899999999986542111223456788999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+. .+.++++++|
T Consensus 150 p~-~~~~~~~i~l 161 (200)
T 2fre_A 150 PD-GFKVEAGVAI 161 (200)
T ss_dssp CT-TEEEEEEEEE
T ss_pred CC-CceEEEEEEE
Confidence 85 4678888888
No 51
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=99.60 E-value=2.2e-15 Score=148.34 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=104.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++|+.++|.+||+. .|.+||++|++||+++|+... +.+ ..+.
T Consensus 41 R~f~~~~V~~e~l~~il~a----------------a~~APS~~n~Qpwrf~vv~~~-e~~----------------~~l~ 87 (198)
T 3ge5_A 41 RKFIDRPVEEEKLMAILEA----------------GRIAPSAHNYQPWHFLVVREE-EGR----------------KRLA 87 (198)
T ss_dssp CCBCSCCCCHHHHHHHHHH----------------HHHCCCGGGCCCEEEEEECSH-HHH----------------HHHG
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHHCCCcCCCCCEEEEEEECH-HHH----------------HHHH
Confidence 3467899999999999998 588999999999999887653 111 1121
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
+.- .+.++.+||++|+++++..+. |+. +++++..+|+|+++||++|+|+++|||+||+++|+++.++++|||
T Consensus 88 ~~~-----~~~~~~~Ap~~ivv~~~~~~~-~~~--~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~l 159 (198)
T 3ge5_A 88 PCS-----QQPWFPGAPIYIITLGDHQRA-WKR--GAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDI 159 (198)
T ss_dssp GGC-----CCTTGGGCSEEEEEEEETTTS-CEE--TTEESHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTC
T ss_pred HHh-----CcccccCCCEEEEEEEecccc-ccc--ccccchHHHHHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhCc
Confidence 110 124567999999999986543 222 567788999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+. .+.++++++|
T Consensus 160 p~-~~~~~~~i~i 171 (198)
T 3ge5_A 160 PS-HMTPVSILAL 171 (198)
T ss_dssp CT-TEEEEEEEEE
T ss_pred CC-CceEEEEEEE
Confidence 87 4678888888
No 52
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=99.60 E-value=9.2e-16 Score=150.19 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=104.6
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... +.+. .+.+
T Consensus 16 ~f~~~~v~~e~l~~il~a----------------a~~aPS~~n~qpw~~~vv~~~-~~~~----------------~l~~ 62 (193)
T 3g14_A 16 KFEQTAIDRDKLLKIIDM----------------AMRAPSWKNKTPYKFIVVESD-KLKL----------------DIAN 62 (193)
T ss_dssp CBCCCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HHHH----------------HHHH
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHHCcCccCCCCeEEEEEeCH-HHHH----------------HHHH
Confidence 467889999999999998 578999999999999887653 1111 1111
Q ss_pred CCc-hhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333 225 IPS-RFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303 (650)
Q Consensus 225 ~~~-~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL 303 (650)
.-. .....+.++.+||++|+++++..+...+|+ .++..+|+|+++||++|+|+++|||+||+++|+++.++++|||
T Consensus 63 ~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~l~l 139 (193)
T 3g14_A 63 AIENKTSAASEAVLNSPMTIVAVANPEESGDVSG---KEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKI 139 (193)
T ss_dssp HBCCSSSHHHHHHHHSSEEEEEEECHHHHCEETT---EEHHHHHHHHHHHHHHHHHHHTTCBBCCBCCBCHHHHHHHHTC
T ss_pred HHhhccccchhhhcCCCEEEEEEEeCcccccccc---ccchHhhHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCc
Confidence 000 000012346789999999999776654444 3678999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccc
Q 006333 304 DIFPEFVIPSKPI 316 (650)
Q Consensus 304 d~~~E~v~~~~~i 316 (650)
+.. +.++++++|
T Consensus 140 p~~-~~~~~~i~l 151 (193)
T 3g14_A 140 PDN-LRVVALTPL 151 (193)
T ss_dssp CTT-SEEEEEEEE
T ss_pred CCC-ceEEEEEEE
Confidence 864 578888888
No 53
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=99.58 E-value=4.5e-15 Score=146.92 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=106.1
Q ss_pred chhhhhccC----CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333 136 PLYSSLFTS----LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA 210 (650)
Q Consensus 136 ~~~~~l~~~----~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY 210 (650)
.+.+.+..| .+.+ ++|+.++|.+||+. .|.+||++|+|||+++|+... +.
T Consensus 9 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~ilea----------------a~~APS~~N~Qpw~f~vv~~~-~~-------- 63 (212)
T 3ge6_A 9 DFMEIVKGRRSIRNYDTNVKISKEEMTQILEE----------------ATLAPSSVNMQPWRFLVIDSE-EG-------- 63 (212)
T ss_dssp BHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECSH-HH--------
T ss_pred HHHHHHHhhHhHHhcCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCEEEEEEeCH-HH--------
Confidence 445555543 4666 69999999999998 589999999999999887653 11
Q ss_pred EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHH---Hhhhc-----------------------------
Q 006333 211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREA---WKYGE----------------------------- 258 (650)
Q Consensus 211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~---~KYg~----------------------------- 258 (650)
++.+.+... ..+..+.+|+++|+++++..+.. ..|+.
T Consensus 64 --------~~~l~~~~~---~~~~~~~~a~~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (212)
T 3ge6_A 64 --------KATLAPLAK---FNQVQVETSSAVIAVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPAS 132 (212)
T ss_dssp --------HHHHGGGST---TCHHHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHH
T ss_pred --------HHHHHhhcc---cCcccccCCCEEEEEEeCCchhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 112222110 01234567899999998865321 00110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 259 RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 259 rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
....+..+|+|+++||++|+|+++||++|++++|+.+.++++||||++.+.++++++|
T Consensus 133 ~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~~~~~~~v~~~L~l~p~~~~~~~~ial 190 (212)
T 3ge6_A 133 ALKDSILIDSGLVSMQLMLVARAHGYDTNPIGGYEKDQIAEAFGMEKDRYVPVMLLSI 190 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCSSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCCCceEEEEEEE
Confidence 1123678999999999999999999999999999999999999996666788888888
No 54
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=99.58 E-value=2.2e-15 Score=149.24 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=108.7
Q ss_pred chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
.+.+.+..| .+.+++|+.++|.+||+. .|.+||++|+|||++||+... +.+. .+..
T Consensus 24 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~~---~l~~ 83 (208)
T 4dn2_A 24 ETLEAIRTRRSVRKFSDRPVEPEKLRAVLDA----------------ARLAPSWANMQCWRFVVVEDQ-ATKV---QISE 83 (208)
T ss_dssp BHHHHHHHCCBCCCBCCCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHHH---HHHH
T ss_pred hHHHHHHhCccccCCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCEEEEEEECH-HHHH---HHHH
Confidence 455555543 467899999999999998 588999999999999987653 1111 0111
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG 291 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~ 291 (650)
..-.+ .+. ..........+..+.+||++|+++++..+...+++ .++..+|+|+++||++|+|+++|||+||+++
T Consensus 84 ~~~~~-~~~--~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~ 157 (208)
T 4dn2_A 84 LSYVE-AYF--GPKGYKSNPAQKALAEAPVVIIACGEPPQSGELRG---QQYYLTDVGIAAQNLMLAAHDLGLGSVFVGV 157 (208)
T ss_dssp TCCCC-TTC--CCTTCSSCTTHHHHHHSSEEEEEEECGGGSCEETT---EETHHHHHHHHHHHHHHHHHHTTCEECCBCC
T ss_pred hhhhh-hhh--hhccccccchhhhhcCCCEEEEEEEeccccccccc---ccchHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 00000 000 00000000012346689999999998765533333 3678899999999999999999999999999
Q ss_pred cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+++.++++|||+.. +.++++++|
T Consensus 158 ~~~~~v~~~L~lp~~-~~~~~~i~l 181 (208)
T 4dn2_A 158 FDEQQLGELLGIPAE-LRIVGLFPL 181 (208)
T ss_dssp CCHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred cCHHHHHHHhCcCCC-ceEEEEEEE
Confidence 999999999999864 678888888
No 55
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=99.58 E-value=1.2e-15 Score=149.19 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCcc-cc----CCCCeeeEecCCCCc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIE-SL----CDSPFVAHYAPKEHA 218 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~-gL----~~~pGvYhY~p~~h~ 218 (650)
|.+.+++|+.++|.+||+. .|.+||++|+|||++||+...-. .+ .. +++.+.+....
T Consensus 14 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~~~~~l~~~~~~--~~~~~~~~~~~ 75 (198)
T 3gfa_A 14 RKYKNQSISHETIEKIIEA----------------GINAPSSKNRQPWRFVVITEKEKESMLKAMSK--GIQNEINDNGL 75 (198)
T ss_dssp CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECTTTHHHHHHHHHH--HHHHHHTTCSS
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeChHHHHHHHHHHH--HHhhccccccc
Confidence 3467899999999999998 58899999999999998875410 00 11 22222211111
Q ss_pred hhhhccCCchhcc-ccccCCCCcEEEEEeeechhHHHhh----hchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe--cc
Q 006333 219 LELRAKIPSRFDL-FNNFFPKNSFLVGFSSIFWREAWKY----GERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL--EG 291 (650)
Q Consensus 219 L~~l~~~~~~~~~-~~~~~~~a~~~iv~ta~~~r~~~KY----g~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i--~~ 291 (650)
+...... ..... .+.++.+||++|+++++..+..+++ ......+..+|+|+++||++|+|+++|||+||+ +.
T Consensus 76 ~~~~~~~-~~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~ 154 (198)
T 3gfa_A 76 LPGSRQH-IAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVY 154 (198)
T ss_dssp CGGGGGG-HHHHHHHHHHHHHSSEEEEEEETTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGG
T ss_pred ChhhHHH-HHHHHHHhhhhhCCCEEEEEEEcCcccchhhccccccccchhhHHHHHHHHHHHHHHHHHCCCeeeeecCcc
Confidence 1000000 00000 0234668999999999876544432 112235678999999999999999999999999 88
Q ss_pred cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+++.++++|||+.. ++++++|
T Consensus 155 ~~~~~v~~~l~lp~~---~~~~i~l 176 (198)
T 3gfa_A 155 FAYRELCEWLNTDSQ---LVAAISL 176 (198)
T ss_dssp GGHHHHHHHHTCSSE---EEEEEEE
T ss_pred cCcHHHHHHhCCCcc---eEEEEEE
Confidence 999999999999864 8888888
No 56
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=99.57 E-value=7.8e-15 Score=141.58 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=106.5
Q ss_pred chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
.+.+.+..| .+.+++|+.++|..||+. .|.+||++|+|||++||+... +.+.
T Consensus 7 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~aPs~~n~qp~~~~vv~~~-~~~~------- 62 (178)
T 3e39_A 7 PVLQAIRQRRSIRRYTDEAVSDEAVRLILEA----------------GIWAPSGLNNQPCRFLVIRAD-DPRC------- 62 (178)
T ss_dssp HHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEEETT-STHH-------
T ss_pred HHHHHHHhCcchhcCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECH-HHHH-------
Confidence 345555443 467899999999999998 588999999999999988764 2110
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec-
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE- 290 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~- 290 (650)
..+..... .+.++.+||++|+++++..+.. + -.+..+|+|+++||++|+|+++|||+||++
T Consensus 63 --------~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~~--~----~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~ 124 (178)
T 3e39_A 63 --------DILAAHTR----YGHIVRGAKVIILVFLDREAMY--N----EVKDHQAAGAAVQNMLLAAHALQLGAVWLGE 124 (178)
T ss_dssp --------HHHHTTCS----CHHHHHHCSEEEEEEEEGGGCS--C----HHHHHHHHHHHHHHHHHHHHHTTCEEEEECG
T ss_pred --------HHHHHhhh----cchhhcCCCEEEEEEEcccccc--c----cccHHHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 12222110 1234568999999999865421 1 135589999999999999999999999999
Q ss_pred -ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 -GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 -~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|+++.++++|||+...+.++++++|
T Consensus 125 ~~~~~~~~~~~l~lp~~~~~~~~~i~l 151 (178)
T 3e39_A 125 IINQAATLLPALALDPARLSFEAAIAA 151 (178)
T ss_dssp GGGGHHHHHHHTTCCTTTEEEEEEEEE
T ss_pred cccchHHHHHHhCcCCCceEEEEEEEE
Confidence 89999999999998764778888888
No 57
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=99.57 E-value=5.2e-15 Score=146.67 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=106.6
Q ss_pred chhhhhccC----CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333 136 PLYSSLFTS----LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA 210 (650)
Q Consensus 136 ~~~~~l~~~----~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY 210 (650)
.+.+.+..| .+.+ ++|+.++|.+||+. .|.+||++|+|||+++|+... +.
T Consensus 10 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~-------- 64 (213)
T 3gbh_A 10 DFNEVLNSRKSVKVFDENYKIPREEMDEIITK----------------ATKAPSSVNMQPWRIAVVQSD-EM-------- 64 (213)
T ss_dssp BHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECSH-HH--------
T ss_pred HHHHHHHhhhhHhhcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCcEEEEEeCH-HH--------
Confidence 455555543 4666 69999999999998 588999999999999887652 11
Q ss_pred EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhc--------------------------------
Q 006333 211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE-------------------------------- 258 (650)
Q Consensus 211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~-------------------------------- 258 (650)
+..+.+... ..+..+.+||++|+++++..+. ++..
T Consensus 65 --------~~~L~~~~~---~~~~~~~~ap~~iv~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (213)
T 3gbh_A 65 --------KEKVKESFG---FNSRQLTTSSAMLIIFGDLQNY--EKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLS 131 (213)
T ss_dssp --------HHHHTGGGG---GGHHHHHHSSEEEEEEEETTGG--GGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSC
T ss_pred --------HHHHHHhhc---cCchhhccCCeeEEEEecCchh--hhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 112222110 0123456899999999986542 2111
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 259 --RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 259 --rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
....+.++|+|+++||++|+|+++||++|++++|+.+.++++|||+.+.+.++++++|
T Consensus 132 ~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~i~~~~~~~v~~~L~lp~~~~~~~~~i~l 191 (213)
T 3gbh_A 132 REGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDSDRYVPVLAIAI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCTTTHHHHHTCCTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecCcCHHHHHHHhCCCccCceEEEEEEe
Confidence 1123578999999999999999999999999999999999999999556778888888
No 58
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=99.57 E-value=8.6e-15 Score=143.29 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=107.0
Q ss_pred cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333 135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA 210 (650)
Q Consensus 135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY 210 (650)
..+.+.+..| .+.+++|+.++|.+||+. .|.+||++|+|||+++|+... +.+
T Consensus 20 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~~------- 75 (191)
T 3h4o_A 20 MNFVELAKKRYSCRNYQDRKVEKEKLEKVLDV----------------ARIAPTGGNRQPQRLIVIQEK-EGI------- 75 (191)
T ss_dssp CCHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHHSCCGGGCCCEEEEEECSH-HHH-------
T ss_pred HHHHHHHHhCccccccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEeCH-HHH-------
Confidence 3455666543 467899999999999998 588999999999999887652 111
Q ss_pred EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333 211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE 290 (650)
Q Consensus 211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~ 290 (650)
..+... . .+.+||++|+++++..+. |+....++++..+|+|+++||++|+|+++|||+||++
T Consensus 76 ---------~~l~~~------~--~~~~Ap~~ivv~~~~~~~-~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~ 137 (191)
T 3h4o_A 76 ---------NKLSKA------A--NIYDAPLAILVCGDKDKV-WTRPFDGKQLTDIDTSIVTDHMMLQATELGLASVWVC 137 (191)
T ss_dssp ---------HHHHHH------S--CCTTCSEEEEEEEETTTS-CBCTTTCCBCHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ---------HHHHHh------c--CcCCCCEEEEEEEecchh-cccccccccchHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 112111 0 145899999999986543 2222234577889999999999999999999999999
Q ss_pred ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 ~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|+++.++++|||+.. +.++++++|
T Consensus 138 ~~~~~~v~~~l~lp~~-~~~~~~i~l 162 (191)
T 3h4o_A 138 YFNPDIIREEFSLPDN-LEPINILLM 162 (191)
T ss_dssp CSCHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred ccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence 9999999999999864 567888888
No 59
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=99.56 E-value=6.4e-15 Score=147.77 Aligned_cols=150 Identities=16% Similarity=0.072 Sum_probs=108.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... +... .++.+....+... -..
T Consensus 39 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~~---~l~~~~~~~~~~~-~~~ 97 (230)
T 2isk_A 39 EFLPEPLSEELIARLLGA----------------AHQAPSVGFMQPWNFVLVRQD-ETRE---KVWQAFQRANDEA-AEM 97 (230)
T ss_dssp CCCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHHH---HHHHHHHHHHHHH-HHT
T ss_pred ccCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEcCH-HHHH---HHHHHHHHHHHHH-hhh
Confidence 567889999999999998 588999999999999887643 2221 2333211111000 000
Q ss_pred CCch--h---ccccccCCCCcEEEEEeeechhH-HHhhhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHH
Q 006333 225 IPSR--F---DLFNNFFPKNSFLVGFSSIFWRE-AWKYGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKEL 297 (650)
Q Consensus 225 ~~~~--~---~~~~~~~~~a~~~iv~ta~~~r~-~~KYg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l 297 (650)
.... . ......+.++|++|+++++..+. .++|+.+.++ +.++|+|+++|||+|+|+++||++||+++|+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~v 177 (230)
T 2isk_A 98 FSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEI 177 (230)
T ss_dssp SCHHHHHHHHHSCCCCTTTSSEEEEEEEETTTTCSSCTTCSSCTTHHHHHHHHHHHHHHHHHHHHTEEEEECCCSCHHHH
T ss_pred cCHHHHHHHHHHhhhhhhcCCeEEEEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHHCCCceeeecccCHHHH
Confidence 0000 0 00112467899999999886654 2688888775 67899999999999999999999999999999999
Q ss_pred HHHhCCCCCCcceeeeccc
Q 006333 298 KKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 298 ~~lLgLd~~~E~v~~~~~i 316 (650)
+++|||+. .+.++++++|
T Consensus 178 ~~~L~lp~-~~~~~~~i~l 195 (230)
T 2isk_A 178 KAILGIPD-HVEIVAWLCL 195 (230)
T ss_dssp HHHHTCCT-TEEEEEEEEE
T ss_pred HHHhCCCC-CceeEEEEEE
Confidence 99999985 4567788888
No 60
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0
Probab=99.56 E-value=2e-14 Score=146.38 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=103.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.++||+.++|.+||+. .+.+||++|++||+++|+... +. +..+.
T Consensus 13 R~F~~~pV~~e~L~~ilea----------------A~~APS~~N~Qpw~fivv~~~-e~----------------~~~L~ 59 (248)
T 3eof_A 13 RKYQQKDITPDLLNDLLET----------------SFRASTMGGMQLYSVVVTRDA-EK----------------KEILS 59 (248)
T ss_dssp CCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HH----------------HHHHT
T ss_pred cCCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCcCeEEEEEECH-HH----------------HHHHH
Confidence 3467899999999999998 578999999999999887643 11 11222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHH-Hh--------hhc-hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc--
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-WK--------YGE-RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG-- 291 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-~K--------Yg~-rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~-- 291 (650)
.... .+.++.+||++|+++++..+.. |. |.+ ..+.++.+|+|+++||++|+|+++|||+||+++
T Consensus 60 ~~~~----~~~~~~~Ap~~ivv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLGsc~ig~~~ 135 (248)
T 3eof_A 60 PAHF----NQPMVKEAPVVLTFCADFRRFCKYCQERNAVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTT 135 (248)
T ss_dssp TTTT----TCTHHHHSSEEEEEEEECHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred HHhc----CCCcccCCCEEEEEEEechHhHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccc
Confidence 2110 1234568999999999987643 21 111 124578999999999999999999999999998
Q ss_pred cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+.+.+.++|||+. .+.++++++|
T Consensus 136 ~~~~~v~~~L~lp~-~~~~v~~i~l 159 (248)
T 3eof_A 136 YNPQMIIDALHLPE-LVFPITTVTV 159 (248)
T ss_dssp TSHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred cCHHHHHHHhCcCC-CceEEEEEEE
Confidence 99999999999987 4678888888
No 61
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=99.56 E-value=1.6e-14 Score=141.93 Aligned_cols=134 Identities=9% Similarity=0.038 Sum_probs=99.5
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... + . .+.+
T Consensus 18 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~-------~-----------~l~~ 62 (204)
T 2b67_A 18 HFTDKLVDPKDVRTAIEI----------------ATLAPSAHNSQPWKFVVVREK-N-------A-----------ELAK 62 (204)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEESSS-H-------H-----------HHHT
T ss_pred ccCCCCCCHHHHHHHHHH----------------HHhCcCcccCCCeEEEecCCh-h-------H-----------HHHH
Confidence 467899999999999998 588999999999999887653 1 1 1111
Q ss_pred CCchhccccccCCCCcEEEEEeeechhHH-------------------Hhhh------------chhhhHHHHHHHHHHH
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWREA-------------------WKYG------------ERAFRYCNHDVGHAIA 273 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-------------------~KYg------------~rayR~~~lDaG~~~q 273 (650)
.... ..+..+.+++++|+++++..... ..|+ +..+.++.+|+|+++|
T Consensus 63 ~~~~--~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~g~a~~ 140 (204)
T 2b67_A 63 LAYG--SNFEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVAM 140 (204)
T ss_dssp TBCT--THHHHHHHSSEEEEEEEESCHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH--cCchhhcCCCEEEEEEecCchHHHHHHHHHcccchhhHHHHHHHHHhhhhhhhhccCHHHHHHHHHHHHHHHHH
Confidence 1100 01123457888888888754210 0121 1123467789999999
Q ss_pred HHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 274 AVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 274 ~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus 141 nl~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~-~~~~~~~i~l 182 (204)
T 2b67_A 141 NLVLALTDQGIGSNIILGFDKSKVNEVLEIED-RFRPELLITV 182 (204)
T ss_dssp HHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred HHHHHHHHCCCceeeEcccCHHHHHHHhCCCC-CCceEEEEEe
Confidence 99999999999999999999999999999986 4667888888
No 62
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=99.55 E-value=1.6e-14 Score=147.34 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=105.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.++||+.++|..||+. .|.+||++|++||+++|+... +. ...+.
T Consensus 15 R~F~~~~V~~e~L~~il~a----------------A~~APS~~N~Qpw~~ivv~d~-~~----------------~~~L~ 61 (249)
T 3n2s_A 15 RSFTDQLLTAEEIDTLVKS----------------AQAASTSSYVQAYSIIGVSDP-EK----------------KRELS 61 (249)
T ss_dssp CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHH
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCcCeEEEEEeCH-HH----------------HHHHH
Confidence 3467899999999999998 588999999999999887542 11 11222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchh------------hhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA------------FRYCNHDVGHAIAAVAMAAAELGWDVKILEG 291 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra------------yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~ 291 (650)
+... .+.++.++|.+|+++++..+....+...+ +.+..+|+|+++||++|+|+++|||+||+++
T Consensus 62 ~~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~slGLgsc~ig~ 137 (249)
T 3n2s_A 62 VLAG----NQPYVEKNGHFFVFCADLYRHQQLAEEKGEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGG 137 (249)
T ss_dssp HHTT----SCGGGTSSSEEEEEEEECHHHHHHHHHTTCCCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGG
T ss_pred Hhhc----CchhhHhCcchhhhhhhhHHHHHHHHHcCCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCEeeecc
Confidence 1110 13467889999999999887665443222 3357899999999999999999999999999
Q ss_pred c--CHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 M--GYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f--~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
| +.+.+.++|||+.. +.++++++|
T Consensus 138 ~~~~~~~v~~~L~lp~~-~~~~~~l~l 163 (249)
T 3n2s_A 138 IRNELDKVTEVLQTPDH-VLPLFGLAV 163 (249)
T ss_dssp GGGGHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred ccccHHHHHHHhCcCCC-ceEEEEEEE
Confidence 9 88999999999864 567788888
No 63
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=99.55 E-value=2.6e-14 Score=136.53 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=101.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++++.++|.+||+. .|.+||++|++||+++|+... +. +..+.
T Consensus 12 R~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qp~~~~vv~~~-~~----------------~~~l~ 58 (168)
T 3e10_A 12 RNYKGKKVEKEKIEKLLRA----------------AMQAPSAGNQQPWEFIVLEDR-EN----------------IDKLS 58 (168)
T ss_dssp CCBCSSCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHG
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCH-HH----------------HHHHH
Confidence 4577899999999999998 478999999999999887542 11 11222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH----HHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY----KELKK 299 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d----~~l~~ 299 (650)
+... .+.++.+||++|+++++..+. +| .++..+|+|+++||++|+|+++|||+||+++|+. +.+++
T Consensus 59 ~~~~----~~~~~~~Ap~~iv~~~~~~~~--~~----~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~~ 128 (168)
T 3e10_A 59 NFSK----YANSLKTAPLAIVLLADEEKM--KI----SEMWEQDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKE 128 (168)
T ss_dssp GGST----TCGGGGGCSEEEEEEEEGGGC--SS----GGGHHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH
T ss_pred Hhcc----cchhhhcCCEEEEEEEccccc--cC----cchHHHHHHHHHHHHHHHHHHCCCeEEEEecccccchhHHHHH
Confidence 1110 123567899999999986543 22 3567899999999999999999999999999875 89999
Q ss_pred HhCCCCCCcceeeeccc
Q 006333 300 LMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 300 lLgLd~~~E~v~~~~~i 316 (650)
+|||+. .+.++++++|
T Consensus 129 ~l~lp~-~~~~~~~i~l 144 (168)
T 3e10_A 129 MFNLKS-NIKPFCVISV 144 (168)
T ss_dssp HTTCCT-TEEEEEEEEE
T ss_pred HcCcCC-CceEEEEEEE
Confidence 999975 4678888888
No 64
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=99.54 E-value=1e-14 Score=144.53 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=99.7
Q ss_pred CCCCCCC-CCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPPPQP-LTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~~~p-l~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+.+++ |+.++|.+||+. .|.+||++|+|||+++|+... +. ...+
T Consensus 20 R~f~~~~~V~~e~l~~ilea----------------a~~APS~~N~Qpw~fivv~~~-~~----------------~~~l 66 (210)
T 3qdl_A 20 KMFDSHYEFSSTELEEIAEI----------------ARLSPSSYNTQPWHFVMVTDK-DL----------------KKQI 66 (210)
T ss_dssp CCBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HH----------------HHHH
T ss_pred hhcCCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEcCH-HH----------------HHHH
Confidence 3467776 999999999998 589999999999999877542 11 1123
Q ss_pred ccCCchhccccccCCCCcEEEEEeeechhHHHhhh----------------------------------chhhhHHHHHH
Q 006333 223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYG----------------------------------ERAFRYCNHDV 268 (650)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg----------------------------------~rayR~~~lDa 268 (650)
.+.... .+..+.+|+++|+++++. .|++. ++...++..|+
T Consensus 67 ~~~~~~---~~~~~~~Ap~~iv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 140 (210)
T 3qdl_A 67 AAHSYF---NEEMIKSASALMVVCSLR---PSELLPHGHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQRLESYILEQC 140 (210)
T ss_dssp HTTSGG---GHHHHHHCSEEEEEEECC---HHHHCC--------------------------------CCHHHHHHHHHH
T ss_pred HHHHhh---cchhhcCCCEEEEEEecc---hHHHHHHHHHHccCCcHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 222110 112346788888888753 23220 11235678899
Q ss_pred HHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 269 GHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 269 G~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+++||++|+|+++|||+||+++|+.+.++++|||+.+.+.++++++|
T Consensus 141 g~a~~~~~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~~~~~~~~~i~~ 188 (210)
T 3qdl_A 141 YIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERINKPKIACLIAL 188 (210)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceeecccCHHHHHHHhCCCCCCceEEEEEEe
Confidence 999999999999999999999999999999999999445678888888
No 65
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=99.54 E-value=1.6e-14 Score=147.72 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=104.4
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.++||+.++|.+||+. .|.+||++|++||+++|+... +. ...+.+
T Consensus 16 ~F~~~~V~~e~l~~il~a----------------A~~APS~~n~Qpw~~ivv~d~-~~----------------~~~L~~ 62 (255)
T 1zch_A 16 SYTDEPVAQEQLDQIIEA----------------VQSAPSSINGQQVTVITVQDK-ER----------------KKKISE 62 (255)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HHHSCCGGGCCCEEEEEECCH-HH----------------HHHHHH
T ss_pred CcCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEEcCH-HH----------------HHHHHH
Confidence 467889999999999998 578999999999999887542 11 112221
Q ss_pred CCchhccccccCCCCcEEEEEeeechhHHHhhhc------------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE------------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM 292 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~------------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f 292 (650)
... .+.++.+++.+|++++++.+..+.+.. ..+++..+|+|+++||++|+|+++|||+|++++|
T Consensus 63 ~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~ 138 (255)
T 1zch_A 63 LAG----GQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAV 138 (255)
T ss_dssp HTT----CCHHHHHSSEEEEEEEECHHHHHHHHHHHCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred hhc----cchhhhcCCceeEEEEechHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCcEeeeccc
Confidence 100 123455788999999998887665543 2356788999999999999999999999999998
Q ss_pred --CHHHHHHHhCCCCCCcceeeeccc
Q 006333 293 --GYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 293 --~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+++.|.++|||+.. +.++++++|
T Consensus 139 ~~~~~~v~~~L~lp~~-~~~~~~l~l 163 (255)
T 1zch_A 139 RGNPQELIELLELPKY-VFPLSGLVI 163 (255)
T ss_dssp GSSHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred ccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence 88999999999854 667778888
No 66
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=99.53 E-value=2e-14 Score=141.62 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.|.+ ++|+.++|.+||+. .|.+||++|+|||+++|+... +.+ +.+.
T Consensus 18 ~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~----------------~~l~ 64 (206)
T 3gag_A 18 RFDPDAVLPNDLIKDMLEH----------------ASYAPSGNNFQPWRVVVVKNK-NKQ----------------EDLK 64 (206)
T ss_dssp CBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HHH----------------HHHH
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHHCCCCCCCCCeEEEEEcCH-HHH----------------HHHH
Confidence 4664 79999999999998 588999999999999887653 111 1222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHH-Hh-hhc-----------------------------hhhhHHHHHHHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-WK-YGE-----------------------------RAFRYCNHDVGHAI 272 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-~K-Yg~-----------------------------rayR~~~lDaG~~~ 272 (650)
+... .+..+.+|+++|+++++..+.. .+ |+. ....+..+|+|+++
T Consensus 65 ~~~~----~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~ 140 (206)
T 3gag_A 65 KLAA----LQPQVATASAVFLLFGDENAYDLTWWQEFHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFA 140 (206)
T ss_dssp HTTT----TCTHHHHSSEEEEEEEEGGGCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHH
T ss_pred HHhc----CCccccCCCEEEEEEecCCcccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 2110 1234568899999999865431 11 110 11236789999999
Q ss_pred HHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 273 AAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 273 q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
||++|+|+++||++|++++|+.+.++++|||+. .+.++++++|
T Consensus 141 ~nl~LaA~~~Glgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~l 183 (206)
T 3gag_A 141 MNLMQVVRVYGYDSVPMRGVDFDAIKTYLDMPN-GWEPILMLPV 183 (206)
T ss_dssp HHHHHHHHHTTCEECCBCCSCHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeeeecccCHHHHHHHhCcCC-CcceEEEEEe
Confidence 999999999999999999999999999999984 4668888888
No 67
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=99.52 E-value=2.1e-14 Score=145.46 Aligned_cols=135 Identities=14% Similarity=0.099 Sum_probs=104.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++|+.++|..||+. .|.+||++|++||+++|+... +. ...+.
T Consensus 15 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~ivv~~~-~~----------------~~~l~ 61 (240)
T 1f5v_A 15 RHFTDEPISEAQREAIINS----------------ARATSSSSFLQCSSIIRITDK-AL----------------REELV 61 (240)
T ss_dssp CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHH
T ss_pred cCcCCCCCCHHHHHHHHHH----------------HHhCCCcccCCCeEEEEEeCH-HH----------------HHHHH
Confidence 3467899999999999998 478999999999998776532 11 11222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHHHhhhc------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYK 295 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~ 295 (650)
+... .+.++.+++.+|++++++.+..+.|.. +.+++..+|+|+++||++|+|+++|||+|++++| +++
T Consensus 62 ~~~~----~~~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~ 137 (240)
T 1f5v_A 62 TLTG----GQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIE 137 (240)
T ss_dssp HHTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHH
T ss_pred HHhc----CChhHHcccHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHH
Confidence 1100 123456788999999998887665543 4567889999999999999999999999999999 789
Q ss_pred HHHHHhCCCCCCcceeeeccc
Q 006333 296 ELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 296 ~l~~lLgLd~~~E~v~~~~~i 316 (650)
.+.++|||+.. +.++++++|
T Consensus 138 ~v~~~L~lp~~-~~~~~~l~l 157 (240)
T 1f5v_A 138 AVTKLLKLPQH-VLPLFGLCL 157 (240)
T ss_dssp HHHHHTTCCTT-EEEEEEEEE
T ss_pred HHHHHhCCCCC-ceEEEEEEE
Confidence 99999999864 567778888
No 68
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=99.52 E-value=2.2e-14 Score=145.29 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=104.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|..||+. .+.+||++|++||+++|+... +. +..+.+
T Consensus 16 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~ivv~~~-~~----------------~~~l~~ 62 (240)
T 1bkj_A 16 KFTAVPITDEQRQTIIQA----------------GLAASSSSMLQVVSIVRVTDS-EK----------------RNELAQ 62 (240)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH----------------HHhCCCccCCCCEEEEEEcCH-HH----------------HHHHHH
Confidence 467889999999999998 478999999999998775432 11 112221
Q ss_pred CCchhccccccCCCCcEEEEEeeechhHHHhhhch------hhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHH
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER------AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKE 296 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r------ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~ 296 (650)
... .+.++.+++++|++++++.+....+..+ .+++..+|+|+++||++|+|+++|||+|++++| +++.
T Consensus 63 ~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~ 138 (240)
T 1bkj_A 63 FAG----NQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQ 138 (240)
T ss_dssp HTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHH
T ss_pred HhC----CCchhhcCchhhHHHHhhHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCHHH
Confidence 100 1234567899999999988876665543 356788999999999999999999999999999 7899
Q ss_pred HHHHhCCCCCCcceeeeccc
Q 006333 297 LKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 297 l~~lLgLd~~~E~v~~~~~i 316 (650)
|.++|||+.. +.++++++|
T Consensus 139 v~~~L~lp~~-~~~~~~l~l 157 (240)
T 1bkj_A 139 VDELLGLPEN-SAVLFGMCL 157 (240)
T ss_dssp HHHHTTCCTT-EEEEEEEEE
T ss_pred HHHHhCcCCC-eeEEEEEEE
Confidence 9999999864 567788888
No 69
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=99.52 E-value=3.4e-14 Score=139.45 Aligned_cols=142 Identities=8% Similarity=0.072 Sum_probs=101.5
Q ss_pred hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEe
Q 006333 137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHY 212 (650)
Q Consensus 137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY 212 (650)
+.+.+..| .+.+++|+.++|.+||+. .|.+||++|+|||+++|+... +.+
T Consensus 10 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~-~~~--------- 63 (205)
T 1nox_A 10 AKTAALKRRSIRRYRKDPVPEGLLREILEA----------------ALRAPSAWNLQPWRIVVVRDP-ATK--------- 63 (205)
T ss_dssp HHHHHHHCCCCCCBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCEEEEEECCH-HHH---------
T ss_pred HHHHHHHhhhhccCCCCCCCHHHHHHHHHH----------------HhhCcCcCCccceEEEEEcCH-HHH---------
Confidence 44555443 467889999999999998 588999999999998876542 111
Q ss_pred cCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhH------------------------HHhhh----chhhhHH
Q 006333 213 APKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWRE------------------------AWKYG----ERAFRYC 264 (650)
Q Consensus 213 ~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~------------------------~~KYg----~rayR~~ 264 (650)
..+.+... .+..+.+++.+|+++++..+. ...|+ +..+++.
T Consensus 64 -------~~l~~~~~----~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (205)
T 1nox_A 64 -------RALREAAF----GQAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWA 132 (205)
T ss_dssp -------HHHHHHTT----TCTHHHHSSEEEEEEECHHHHHHTGGGTSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred -------HHHHHhcc----CChhhcCCCeEEEEEecccchHHHHHHHHHhccCcHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11211100 012234567777777765320 01121 1225678
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 265 NHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 265 ~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
.+|+|+++||++|+|+++|||+||+++|+++.++++|||+.. +.++++++|
T Consensus 133 ~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~~-~~~~~~i~l 183 (205)
T 1nox_A 133 SGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPSR-AAIPALVAL 183 (205)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHhCCCCC-CceEEEEEe
Confidence 899999999999999999999999999999999999999954 567888888
No 70
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=99.52 E-value=4.9e-14 Score=139.59 Aligned_cols=137 Identities=17% Similarity=0.052 Sum_probs=95.5
Q ss_pred CCCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+. +++|+.++|.+||+. .|.+||++|+|||+++|+... +.+. .+
T Consensus 17 R~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~-~~~~----------------~l 63 (217)
T 2h0u_A 17 KKYDPNRRISQKDWEALVEV----------------GRLAPSSIGLEPWKMLLLKNE-RMKE----------------DL 63 (217)
T ss_dssp CCBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEECCC------------------------
T ss_pred HhcCCCCCCCHHHHHHHHHH----------------HhhCCcccCCCCeEEEEEeCH-HHHH----------------HH
Confidence 3467 789999999999998 588999999999999876543 2221 11
Q ss_pred ccCCchhccccccCCCCcEEEEEeeechhH------HHh------------------h------------hchhhhHHHH
Q 006333 223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWRE------AWK------------------Y------------GERAFRYCNH 266 (650)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~------~~K------------------Y------------g~rayR~~~l 266 (650)
.+.... .+..+.+++.+|+++++.... ... | .+..+.+..+
T Consensus 64 ~~~~~~---~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (217)
T 2h0u_A 64 KPMAWG---ALFGLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASK 140 (217)
T ss_dssp ----------------CCEEEEEEEESCCCTTCHHHHHHHHHTTCCCCCTTSHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHhc---ChhhhcCCCEEEEEEEcCCcccchHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 111000 123456788888888774321 000 1 1123456789
Q ss_pred HHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh---C-CCCCCcceeeeccc
Q 006333 267 DVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM---G-LDIFPEFVIPSKPI 316 (650)
Q Consensus 267 DaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL---g-Ld~~~E~v~~~~~i 316 (650)
|+|+++||++|+|+++|||+||+++|+++.++++| | |+++.+.++++++|
T Consensus 141 d~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~~~~~l~p~~~~~~~~i~l 194 (217)
T 2h0u_A 141 QTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACF 194 (217)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHTSCCTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcCCCcCcCHHHHHHHHhhcCCCCccccceEEEEEe
Confidence 99999999999999999999999999999999999 9 86666778888888
No 71
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.51 E-value=3e-14 Score=150.61 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=101.8
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.++||+.++|.+||++ .|.+||++|+|||+++|+... +. +..+.+
T Consensus 156 ~F~~~~V~~e~l~~ilea----------------A~~APS~~N~Qpwrfivv~d~-e~----------------~~~l~~ 202 (322)
T 4eo3_A 156 ALKKDRVPREELELLIKA----------------AHLAPSCMNNQPWRFVVVDEE-EL----------------LKKIHE 202 (322)
T ss_dssp CBCCCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCH-HH----------------HHHHHT
T ss_pred CcCccccCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEeCH-HH----------------HHHHHH
Confidence 468999999999999998 589999999999998876542 11 122332
Q ss_pred CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCC
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLD 304 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd 304 (650)
.-.. .+.++.+||++|+++++...... ......+...|+|+++||++|+|+++|||+||+++|+.+.++++|||+
T Consensus 203 ~~~~---~~~~~~~Ap~~ivv~~~~~~~~~--~~~~~~~~~~d~g~a~~nl~LaA~~~GLgs~~~~~~~~~~v~~~L~lP 277 (322)
T 4eo3_A 203 ALPG---GNYWMKNAPALIAVHSKKDFDCA--LPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIP 277 (322)
T ss_dssp TSCG---GGGGGGGCSEEEEEEECGGGSCE--ETTTEECHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCC
T ss_pred hhhh---ccccccCCCEEEEEEeecccccc--ccccccchHHHHHHHHHHHHHHHHHcCcCEEEcCccCHHHHHHHcCcC
Confidence 2111 13456789999999887432211 112334678899999999999999999999999999999999999998
Q ss_pred CCCcceeeeccc
Q 006333 305 IFPEFVIPSKPI 316 (650)
Q Consensus 305 ~~~E~v~~~~~i 316 (650)
.. +.++++++|
T Consensus 278 ~~-~~~~~~ial 288 (322)
T 4eo3_A 278 ED-HVLITLIAV 288 (322)
T ss_dssp TT-SEEEEEEEE
T ss_pred CC-CEEEEEEEE
Confidence 65 567778888
No 72
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=99.51 E-value=4.9e-14 Score=140.23 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=99.0
Q ss_pred CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.+. +++|+.++|.+||+. .|.+||++|+|||+++|+... +.+ ..+.
T Consensus 28 ~f~~~~~V~~e~l~~il~a----------------a~~APS~~N~Qpw~f~vv~~~-~~~----------------~~l~ 74 (218)
T 3bem_A 28 NFLSGHPITKEDLNEMFEL----------------VALAPSAFNLQHTKYVTVLDQ-DVK----------------EKLK 74 (218)
T ss_dssp CCCSSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HHH----------------HHHH
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEECCH-HHH----------------HHHH
Confidence 467 589999999999998 588999999999999887643 111 1222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhH-----HHh-----------------------h----hchhhhHHHHHHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWRE-----AWK-----------------------Y----GERAFRYCNHDVGHA 271 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~-----~~K-----------------------Y----g~rayR~~~lDaG~~ 271 (650)
+... .+..+.+++.+|+++++.... .++ | ..+...+..+|+|++
T Consensus 75 ~~~~----~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a 150 (218)
T 3bem_A 75 QAAN----GQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLS 150 (218)
T ss_dssp HTTT----TCTHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred Hhcc----CCCccCCCCeEEEEEecchhhhhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2110 012345788888888774320 000 1 122345778999999
Q ss_pred HHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 272 IAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 272 ~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+||++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus 151 ~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~l 194 (218)
T 3bem_A 151 AMMFMLSAAAAGWDTCPMIGFDAEAVKRILNIDD-QFEVVMMITI 194 (218)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCC-CceeEEEEEe
Confidence 9999999999999999999999999999999985 4567788888
No 73
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=99.51 E-value=2.6e-14 Score=141.87 Aligned_cols=154 Identities=15% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc--cccCCCCeeeEecCCCC-----
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI--ESLCDSPFVAHYAPKEH----- 217 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v--~gL~~~pGvYhY~p~~h----- 217 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+...- +.|.+ .+........
T Consensus 16 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~~l~~--~~~~~~~~~~~~~~~ 77 (219)
T 3eo8_A 16 KFKNQDVSDEDILKMIKA----------------AGAAPSGKNIQNWHFVVIKRRDLMEKIAD--VITKKQQEILVEMDK 77 (219)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCHHHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECHHHHHHHHH--HHHHHHHHhhhcccc
Confidence 467899999999999998 5889999999999998876531 11211 0000000000
Q ss_pred -chhhhccCCchhccccccCCCCcEEEEEeeechhHH--Hhhhchh-----------hhHHHHHHHHHHHHHHHHHHHcC
Q 006333 218 -ALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREA--WKYGERA-----------FRYCNHDVGHAIAAVAMAAAELG 283 (650)
Q Consensus 218 -~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~--~KYg~ra-----------yR~~~lDaG~~~q~l~LaA~alG 283 (650)
...............+.++.+||++|+++++..+.. ..++..+ .++..+|+|+++||++|+|+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~G 157 (219)
T 3eo8_A 78 VSVDKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYELELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELG 157 (219)
T ss_dssp TCHHHHHHHHHHHHHHTGGGGGSSEEEEEEECCCCCTTHHHHHHTTCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhhhhhhHhhcCCEEEEEEecccchhhhhhhhhcccchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence 000000000000001345779999999999876432 1122221 46788999999999999999999
Q ss_pred CceEEecc--cCHHHHHHHhC----CCCCCcceeeeccc
Q 006333 284 WDVKILEG--MGYKELKKLMG----LDIFPEFVIPSKPI 316 (650)
Q Consensus 284 l~~~~i~~--f~d~~l~~lLg----Ld~~~E~v~~~~~i 316 (650)
||+||+++ |+++.++++|| |+.+...++++++|
T Consensus 158 lgs~~~~~~~~~~~~v~~~L~~~~~lp~~~~~~~~~i~l 196 (219)
T 3eo8_A 158 YGSCWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLAL 196 (219)
T ss_dssp CEEEEECTTGGGHHHHHHHHHHHHCCCCTTCEEEEEEEE
T ss_pred CeeeeecCcccChHHHHHHhCcccCCCCCCceEEEEEEE
Confidence 99999988 99999999999 98755468888888
No 74
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=4.2e-14 Score=136.17 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=103.5
Q ss_pred chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
.+.+.+..| .+.+++|+.++|.+||+. .+.+||++|++||+++|+... +.
T Consensus 11 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qp~~~~vv~~~-~~--------- 64 (175)
T 3kwk_A 11 AALDNIFERKSVRTYLNKGVEKEKIDLMLRA----------------GMSAPSGKDVRPWEFVVVSDR-AK--------- 64 (175)
T ss_dssp HHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HH---------
T ss_pred HHHHHHHhCcCccCCCCCCCCHHHHHHHHHH----------------HHHCcCccCCCCeEEEEEeCH-HH---------
Confidence 455565543 467899999999999998 578999999999999887642 11
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG 291 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~ 291 (650)
+..+.+... .+.++.+||++|+++++..+. ++..+|+|+++||++|+|+++|||+||+++
T Consensus 65 -------~~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~---------~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~ 124 (175)
T 3kwk_A 65 -------LDSMAAALP----YAKMLTQARNAIIVCGDSARS---------FYWYLDCSAAAQNILLAAESMGLGAVWTAA 124 (175)
T ss_dssp -------HHHHHHHCT----TCGGGGGCSEEEEEEEETTTC---------TTHHHHHHHHHHHHHHHHHHTTCEECCEEC
T ss_pred -------HHHHHHhcc----cchhhhcCCEEEEEEEeCccc---------cchHHHHHHHHHHHHHHHHHcCCCeEEEcc
Confidence 112221100 123567899999999986531 456789999999999999999999999999
Q ss_pred cCH----HHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGY----KELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d----~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+. +.++++|||+. .+.++++++|
T Consensus 125 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l 152 (175)
T 3kwk_A 125 YPYEDRMEVVRKYTHLPE-NILPLCVIPF 152 (175)
T ss_dssp TTCHHHHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred ccccchHHHHHHHhCcCC-CcEEEEEEEE
Confidence 985 78999999986 4678888888
No 75
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=99.51 E-value=4.5e-14 Score=135.53 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=103.3
Q ss_pred chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
.+.+.+..| .+.+++|+.++|.+||+. .+.+||++|++||+++|+... +.+
T Consensus 7 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~~~vv~~~-~~~-------- 61 (172)
T 3m5k_A 7 QTLETILNRKSVRKYKDRPVEKEKIDKLIRA----------------GMAAPSSRDRRPWEFIIVTDR-KAL-------- 61 (172)
T ss_dssp HHHHHHHHCCCCCCBCSSCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHH--------
T ss_pred HHHHHHHhCccccCcCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEcCH-HHH--------
Confidence 345555443 467899999999999998 578999999999999877542 111
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG 291 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~ 291 (650)
..+.+... .+.++.+||++|+++++..+. .++..+|+|+++||++|+|+++|||+||+++
T Consensus 62 --------~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~--------~~~~~~d~g~a~~nl~LaA~~~Glgt~~~~~ 121 (172)
T 3m5k_A 62 --------DTMAEGLP----FARMLKETRQAIVVCGDTIKS--------SNAWFLDCSAASQNLLLAAESMGLGAVWTAV 121 (172)
T ss_dssp --------HHHHHHCT----TCGGGGGCSEEEEEEEETTTC--------TTTHHHHHHHHHHHHHHHHHHTTCEECCEEC
T ss_pred --------HHHHHhcc----cchhHhcCCEEEEEEecCccC--------CccHHHHHHHHHHHHHHHHHHcCCeEEEecc
Confidence 12221100 123567899999999986542 3467789999999999999999999999999
Q ss_pred cCH----HHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGY----KELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d----~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+. +.++++|||+. .+.++++++|
T Consensus 122 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l 149 (172)
T 3m5k_A 122 YPYPDRIEIVRKELRLPD-HIMPLNVIPV 149 (172)
T ss_dssp TTCHHHHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred cCcchhHHHHHHHhCcCC-CcEEEEEEEE
Confidence 874 78999999986 4678888888
No 76
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=99.51 E-value=2.8e-14 Score=141.33 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=100.0
Q ss_pred CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.+. +++|+.++|.+||+. .|.+||++|+|||+++|+... +.+. .+.
T Consensus 17 ~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~~~----------------~l~ 63 (218)
T 1vfr_A 17 KYDPSKKVSQEDLAVLLEA----------------LRLSASSINSQPWKFIVIESD-AAKQ----------------RMH 63 (218)
T ss_dssp SBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECSH-HHHH----------------HHH
T ss_pred hcCCCCCCCHHHHHHHHHH----------------HHhCcccCCCCCeEEEEecCH-HHHH----------------HHH
Confidence 466 689999999999998 588999999999999887542 2111 121
Q ss_pred cCCchh-ccccccCCCCcEEEEEeeechhHH-H---------------------hh------------hchhhhHHHHHH
Q 006333 224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREA-W---------------------KY------------GERAFRYCNHDV 268 (650)
Q Consensus 224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~-~---------------------KY------------g~rayR~~~lDa 268 (650)
+.-... ...+..+.+++.+|+++++..+.. + .| +++.+.+...|+
T Consensus 64 ~~~~~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 143 (218)
T 1vfr_A 64 DSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQA 143 (218)
T ss_dssp HTTSSSCGGGTHHHHHSSEEEEEEEESCCCHHHHHHHHHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHH
T ss_pred HHhccchhcCchhhcCCCEEEEEEECCcccHHHHHHHHHHHHhhcccchHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHH
Confidence 110000 001223457788888888753210 0 00 112345677899
Q ss_pred HHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 269 GHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 269 G~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+++||++|+|+++|||+||+++|+++.++++|||+.+.+.++++++|
T Consensus 144 g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~~~~~~~~~i~l 191 (218)
T 1vfr_A 144 YLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGYECHVALAI 191 (218)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcccccccCHHHHHHHhCCCcccceEEEEEEe
Confidence 999999999999999999999999999999999999445678888888
No 77
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Probab=99.49 E-value=6.8e-14 Score=138.77 Aligned_cols=141 Identities=13% Similarity=-0.033 Sum_probs=101.8
Q ss_pred hhhhhccC----CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 137 LYSSLFTS----LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 137 ~~~~l~~~----~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
+.+.+..| .+.++ +|+.++|..||++ .|.+||++|+|||++||+... +.+. .++.
T Consensus 15 ~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~-~~~~---~l~~ 74 (210)
T 2r01_A 15 LRELVARSRSIRRFDEHVAVNDATLRDLVEL----------------VCYTPSAANRQLLRFLPVTGA-DMSD---KVFP 74 (210)
T ss_dssp HHHHHHHCCBCCCBCTTSCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEEEHH-HHHH---TTGG
T ss_pred HHHHHHhCceeeccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCEEEEEEECH-HHHH---HHHH
Confidence 44455443 46787 9999999999998 588999999999999988653 2121 1222
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCc-EEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNS-FLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE 290 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~-~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~ 290 (650)
+......+ . . ..+..+.++| ++|+++++.... ++..+|+|+++||++|+|+++||++||++
T Consensus 75 ~~~~~~~~---~----~--~~~~~~~~ap~~~ivv~~~~~~~---------~~~~~d~g~a~~nl~LaA~~lGlgs~~~~ 136 (210)
T 2r01_A 75 CLKWAGYL---E----D--WPGPEPGERPAAALVMLCRNEDL---------PGAACDSGIAAQTIMLGAAEKELGGCIVA 136 (210)
T ss_dssp GBCCCTTC---T----T--CCSCCTTSSCSEEEEEEEEGGGG---------GGTHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhhhhh---h----h--hcccchhcCCcEEEEEEecCccC---------cchHHHHHHHHHHHHHHHHHCCCCEeeEc
Confidence 11111100 0 0 0123355676 778888775431 24678999999999999999999999999
Q ss_pred ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 ~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|+++.++++|||+.. +.++++++|
T Consensus 137 ~~~~~~~~~~l~lp~~-~~~~~~i~l 161 (210)
T 2r01_A 137 AIDRERLMASLGIPDA-WTVLLVIAL 161 (210)
T ss_dssp CBCHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred ccCHHHHHHHcCcCCC-ceEEEEEEE
Confidence 9999999999999854 568888888
No 78
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=99.49 E-value=1.9e-14 Score=142.57 Aligned_cols=136 Identities=18% Similarity=0.109 Sum_probs=101.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333 144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
|.+.+++|+.++|.+||+. .|.+||++|++||+++|+... +. +..+.
T Consensus 15 R~f~~~~v~~e~l~~il~~----------------a~~aPs~~n~qpw~~~vv~~~-~~----------------~~~l~ 61 (209)
T 3of4_A 15 ADFSGAHITDDVLDKLLNT----------------TRLTASSYGLQPYCTLVIRNK-GL----------------REQLV 61 (209)
T ss_dssp SSBCSCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HH----------------HHHHH
T ss_pred HhcCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEEcCH-HH----------------HHHHH
Confidence 3467899999999999998 588999999999999887642 11 11222
Q ss_pred cCCchhccccccCCCCcEEEEEeeechhHH---Hhhhc------------------------------hhhhHHHHHHHH
Q 006333 224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA---WKYGE------------------------------RAFRYCNHDVGH 270 (650)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~---~KYg~------------------------------rayR~~~lDaG~ 270 (650)
.... .+..+.+||++|+++++..... .+|-+ ....+...|+|+
T Consensus 62 ~~~~----~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 137 (209)
T 3of4_A 62 NHSF----GQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYI 137 (209)
T ss_dssp HTTT----TCTHHHHSSEEEEEEEECSCTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhc----CCcccCCCCeEEEEEecccccHhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2110 1234568999999988754321 12211 122456789999
Q ss_pred HHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 271 AIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 271 ~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
++||++|+|+++||++||+++|+.+.++++|||+...+.++++++|
T Consensus 138 a~~nl~LaA~~~Glgsc~i~g~~~~~v~~~L~lp~~~~~~~~~ial 183 (209)
T 3of4_A 138 GLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGLSTVFACPV 183 (209)
T ss_dssp HHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCCCceEEEEEEe
Confidence 9999999999999999999999999999999998634678888888
No 79
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=99.49 E-value=4.7e-14 Score=140.56 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK 224 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~ 224 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... +. +..+.+
T Consensus 24 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~----------------~~~l~~ 70 (224)
T 2hay_A 24 VYKEEKISDEDLALILDA----------------AWLSPSSIGLEGWRFVVLDNK-PI----------------KEEIKP 70 (224)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHGG
T ss_pred ccCCCCCCHHHHHHHHHH----------------HHhCccccCCCCeEEEEECCH-HH----------------HHHHHH
Confidence 467889999999999998 588999999999999887653 11 112222
Q ss_pred CCchhccccccCCCCcEEEEEeeechh---HH--H--------------------------------hhhchhhhHHHHH
Q 006333 225 IPSRFDLFNNFFPKNSFLVGFSSIFWR---EA--W--------------------------------KYGERAFRYCNHD 267 (650)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r---~~--~--------------------------------KYg~rayR~~~lD 267 (650)
.... .+..+.+++.+++++++... .. . .+.++.+.+..+|
T Consensus 71 ~~~~---~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (224)
T 2hay_A 71 FAWG---AQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDMDMADNPRALFDWTAKQ 147 (224)
T ss_dssp GCTT---CHHHHHHCSEEEEEEEESCCCTTSHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred HHhc---cccccCCCCeEEEEEeccccccCHHHHHHHHHHcCCCChhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Confidence 1100 01234567888888877422 00 0 0123445678899
Q ss_pred HHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh---C-CCCCCcceeeeccc
Q 006333 268 VGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM---G-LDIFPEFVIPSKPI 316 (650)
Q Consensus 268 aG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL---g-Ld~~~E~v~~~~~i 316 (650)
+|+++||++|+|+++|||+||+++|+++.++++| | |+.+.+.++++++|
T Consensus 148 ~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l~~~~~lp~~~~~~~~~i~l 200 (224)
T 2hay_A 148 TYIALGNMMMTAALLGIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASMLSL 200 (224)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHTTSSCTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCcccCCCCcCHHHHHHHHHhcCCCCcccceEEEEEEE
Confidence 9999999999999999999999999999999999 9 98455678888888
No 80
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=99.48 E-value=1.6e-13 Score=133.30 Aligned_cols=138 Identities=13% Similarity=-0.018 Sum_probs=99.9
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhhh
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... .+.|.+ .++.+ +...
T Consensus 18 ~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qpw~f~vv~~~~~~~~l~~--~~~~~------~~~~ 73 (189)
T 3pxv_A 18 DFKNEMPSDELLQAIAEA----------------AIQAPSGMNRQAWRVIVVKNKELMQEMEA--EGLAY------LAGM 73 (189)
T ss_dssp CBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCBCEEEECCHHHHHHHHH--HHHHH------HHTS
T ss_pred cCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEcCHHHHHHHHH--HHHHH------HHhc
Confidence 467899999999999998 578999999999999887753 223321 11110 0000
Q ss_pred ccCCch--h-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc--------
Q 006333 223 AKIPSR--F-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG-------- 291 (650)
Q Consensus 223 ~~~~~~--~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~-------- 291 (650)
...+.. . ......+.+||++|+++++.... ....+|+|+++||++|+|+++|||+||+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~---------~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~ 144 (189)
T 3pxv_A 74 EDQSSYNRIMERGGRLFYGAPCMIVVPIDPTQY---------GPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASG 144 (189)
T ss_dssp SSCHHHHHHHHTTSCTTTTCSEEEEEEECGGGH---------HHHHHHHHHHHHHHHHHHHHTTCEEEECGGGGGGGTTS
T ss_pred ccCcHHHHHHhcccCccCCCCEEEEEEecCCCC---------cchhhhHHHHHHHHHHHHHHCCCceehhccHHHhhccc
Confidence 000000 0 00113578999999999875432 234789999999999999999999999997
Q ss_pred cCHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 MGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|+++.+.++|||+.. +.++++++|
T Consensus 145 ~~~~~~~~~l~lp~~-~~~~~~i~l 168 (189)
T 3pxv_A 145 LRAEEFSKRLGFPEG-YAFGCSVLL 168 (189)
T ss_dssp TTHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred cchHHHHHHcCcCCC-cEEEEEEEE
Confidence 789999999999865 568888888
No 81
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A
Probab=99.44 E-value=1.5e-13 Score=132.35 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeEecCCCCchhhhc
Q 006333 145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAHYAPKEHALELRA 223 (650)
Q Consensus 145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYhY~p~~h~L~~l~ 223 (650)
.+.+++++.++|.+||+. .|.+||++|+|||+++|+... .+.|.. .++. .... .
T Consensus 15 ~f~~~~v~~e~l~~il~a----------------a~~aPS~~n~qpw~~~vv~~~~~~~l~~--~~~~------~~~~-~ 69 (183)
T 3bm1_A 15 RLAEPAPTGEQLQNILRA----------------GMRAPDHKSMQPWHFFVIEGEGRERFSA--VLEQ------GAIA-A 69 (183)
T ss_dssp CEESCCCCHHHHHHHHHH----------------HTTSCCTTSCCCCEEEEEETHHHHHHHH--HHHH------HHHH-H
T ss_pred hcCCCCcCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEchhHHHHHHH--HHHH------HHhc-c
Confidence 456789999999999998 588999999999999987664 122211 0110 0000 0
Q ss_pred cCCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHH
Q 006333 224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKL 300 (650)
Q Consensus 224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~l 300 (650)
..+... ...+..+.++|++|+++++.... ++ ..++...+|+|+++||++|+|+++|+|+|++++| +++.++++
T Consensus 70 ~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~-~~---~~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~ 145 (183)
T 3bm1_A 70 GSDDKAIDKARNAPFRAPLIITVVAKCEEN-HK---VPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREA 145 (183)
T ss_dssp TCCHHHHHHHHHGGGGSSEEEEEEECCCSC-SS---SCHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHHH
T ss_pred CCCHHHHHHHHhhhccCCEEEEEEEecCCC-CC---CCcHHHHHHHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHHH
Confidence 000000 00122456889998888875431 22 2355678999999999999999999999999988 57899999
Q ss_pred hCCCCCCcceeeeccc
Q 006333 301 MGLDIFPEFVIPSKPI 316 (650)
Q Consensus 301 LgLd~~~E~v~~~~~i 316 (650)
|||+.. +.++++++|
T Consensus 146 l~lp~~-~~~~~~i~~ 160 (183)
T 3bm1_A 146 FGCREQ-DKIVGFLYL 160 (183)
T ss_dssp TTCCTT-CEEEEEEEE
T ss_pred hCCCCC-CEEEEEEEe
Confidence 999854 567777777
No 82
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=99.44 E-value=3.9e-13 Score=131.79 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=102.5
Q ss_pred hhhhhcc----C-CCCCCCCC-HHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cccCCCCee
Q 006333 137 LYSSLFT----S-LPPPQPLT-VSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ESLCDSPFV 209 (650)
Q Consensus 137 ~~~~l~~----~-~~~~~pl~-~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~gL~~~pGv 209 (650)
+.+.+.. | .+.+++++ .++|.+||+. .|.+||++|++||+++|+.... +.|.+ .+
T Consensus 11 ~~~~i~~RrSvR~~f~~~~v~~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~l~~--~~ 72 (197)
T 3k6h_A 11 LLDYLRVRRSTPALQLSEPGPSKGEIEEILRL----------------AVRVPDHGKLAPWRFVVYRGEERVRLSE--AA 72 (197)
T ss_dssp HHHHHTTCCCCCSTTCBSCCCCHHHHHHHHHH----------------HTCSCCTTSCCCEEEEEEETHHHHHHHH--HH
T ss_pred HHHHHHhccCCCccccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEcchHHHHHHH--HH
Confidence 4455544 3 36688997 9999999998 5889999999999999887641 11110 00
Q ss_pred eEecCCCCchhhhcc-CCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceE
Q 006333 210 AHYAPKEHALELRAK-IPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVK 287 (650)
Q Consensus 210 YhY~p~~h~L~~l~~-~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~ 287 (650)
.. .+..... .+... ...+..+.+||++|+++++..+. +++. .....+|+|+++||++|+|+++|||+|
T Consensus 73 ~~------~~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~-~~~~---~~~~~~d~g~a~~nl~LaA~~~GLgt~ 142 (197)
T 3k6h_A 73 LR------IALEKNPDLDLQQQEAERTRFTRAPVVIAVISTAKPH-FKIP---EWEQVMSAGAVCLNVIFAANASGFAAN 142 (197)
T ss_dssp HH------HHHHHSSSCCHHHHHHHHTTTTSSSEEEEEEECCCCC-SSSC---HHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HH------HHHhcCCCCCHHHHHHHHhhhhcCCEEEEEEEecCCC-CCCC---HHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence 00 0000000 00000 00134678999999999886432 2221 234678999999999999999999999
Q ss_pred Eeccc--CHHHHHHHhCCCCCCcceeeeccc
Q 006333 288 ILEGM--GYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 288 ~i~~f--~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|++++ .++.++++|||+.. +.++++++|
T Consensus 143 ~~~~~~~~~~~v~~~l~lp~~-~~~~~~i~l 172 (197)
T 3k6h_A 143 WLTEWLAFDPAFLAEIGVSAE-EKVAGYIHI 172 (197)
T ss_dssp EECCGGGTCHHHHHHHTCCSS-CEEEEEEEE
T ss_pred EecCccccCHHHHHHhCcCCC-CEEEEEEEE
Confidence 99973 34559999999864 568888888
No 83
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}
Probab=99.42 E-value=3.2e-13 Score=131.06 Aligned_cols=149 Identities=11% Similarity=0.007 Sum_probs=101.2
Q ss_pred hhhhhcc----CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeE
Q 006333 137 LYSSLFT----SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAH 211 (650)
Q Consensus 137 ~~~~l~~----~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYh 211 (650)
+.+.+.. |.+.+++|+.++|.+||+. .|.+||++|+|||+++|+... .+.|.+ .++.
T Consensus 10 ~~~~i~~RrS~R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~~~~~l~~--~~~~ 71 (189)
T 2i7h_A 10 IANVIKERRSVRTFTDKAVEKDLLIELLND----------------ATWAPNHKHREPWNCKLYIGEGRKKLVD--AVLN 71 (189)
T ss_dssp HHHHHHHCCBCCCCCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEEEGGGHHHHHH--HHHH
T ss_pred HHHHHHhcccHhhhCCCCcCHHHHHHHHHH----------------HHhCCCCCCcCCeEEEEECcHHHHHHHH--HHHH
Confidence 4445544 3477889999999999998 578999999999999887654 111110 0100
Q ss_pred ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333 212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG 291 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~ 291 (650)
.. ..... .......+..+.++|++|+++++... .++ .+...++|+|+++||++|+|+++|||+||+++
T Consensus 72 ~~------~~~~~-~~~~~~~~~~~~~ap~~i~~~~~~~~--~~~---~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~ 139 (189)
T 2i7h_A 72 SF------TEEER-AKRGKILSDRFLSTPAQIVVYMNEDP--RQI---QRDEDYAATCAFMQNFQLLAWERGLGCVWKSG 139 (189)
T ss_dssp TS------CHHHH-HHHHHHHHHHHHTSSEEEEEEEECCS--SHH---HHHHHHHHHHHHHHHHHHHHHHTTEEEEEECS
T ss_pred HH------hccCc-hHHHHHHHhHHhcCCEEEEEEEecCC--CCC---chHHHHHHHHHHHHHHHHHHHHCCCeeEEecC
Confidence 00 00000 00000011235688999988887432 111 24467789999999999999999999999986
Q ss_pred -c-CHHHHHHHhCCCCCCcceeeeccc
Q 006333 292 -M-GYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 292 -f-~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
| +++.++++|||+. .+.++++++|
T Consensus 140 ~~~~~~~~~~~l~lp~-~~~~~~~i~l 165 (189)
T 2i7h_A 140 GLNYNPLFIEGIGLTR-GQRIVGILHI 165 (189)
T ss_dssp GGGGCHHHHHHTTCCT-TEEEEEEEEE
T ss_pred CccCCHHHHHHhCcCC-CCeEEEEEEE
Confidence 6 6789999999985 4567888888
No 84
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=99.42 E-value=1.5e-13 Score=135.86 Aligned_cols=140 Identities=20% Similarity=0.157 Sum_probs=98.8
Q ss_pred CCCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 144 SLPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 144 ~~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
|.+. +++|+.++|.+||+. .|.+||++|+|||+++|+... +.+ ..+
T Consensus 14 R~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~-e~~----------------~~l 60 (217)
T 1icr_A 14 KAFDASKKLTPEQAEQIKTL----------------LQYSPSSTNSQPWHFIVASTE-EGK----------------ARV 60 (217)
T ss_dssp SCBCTTCCCCHHHHHHHHHH----------------HHHCCCGGGCCCEEEEEECSH-HHH----------------HHH
T ss_pred HhcCCCCCCCHHHHHHHHHH----------------HHHCccccCCCCeEEEEeCCH-HHH----------------HHH
Confidence 3467 689999999999998 588999999999999887542 211 112
Q ss_pred ccCCchhc-cccccCCCCcEEEEEeeechhHH-H-h--------h--------------------------hchhhhHHH
Q 006333 223 AKIPSRFD-LFNNFFPKNSFLVGFSSIFWREA-W-K--------Y--------------------------GERAFRYCN 265 (650)
Q Consensus 223 ~~~~~~~~-~~~~~~~~a~~~iv~ta~~~r~~-~-K--------Y--------------------------g~rayR~~~ 265 (650)
.+.-.... ..+..+.+++.+|+++++..+.. | + . .+..+.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~ 140 (217)
T 1icr_A 61 AKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMA 140 (217)
T ss_dssp HTTSCGGGGGGHHHHHHSSEEEEEEEESSCCHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhhhhhcChhhhcCCCeEEEEEeCCccchHHHHHHHHHHHhhccCCHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHH
Confidence 21110000 01123457788888888753200 0 0 0 112334567
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 266 lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
.|+|+++||++|+|+++|||+|++++|+++.++++|||+.+.+.++++++|
T Consensus 141 ~~~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~~~~~~~~~i~l 191 (217)
T 1icr_A 141 KQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPV 191 (217)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHHTHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCccCCceEEEEEe
Confidence 899999999999999999999999999999999999998334567788888
No 85
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=99.42 E-value=9.5e-13 Score=127.98 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=100.1
Q ss_pred hhhhhcc----CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeee
Q 006333 137 LYSSLFT----SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVA 210 (650)
Q Consensus 137 ~~~~l~~----~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvY 210 (650)
+++.+.. |.+.+++|+.++|.+||+. .|.+||++|++||+++|+... .+.|.+ .+.
T Consensus 7 ~~~~i~~RrSiR~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qpw~f~vv~~~~~~~~l~~--~~~ 68 (190)
T 3ek3_A 7 VLETIKARRSVRAYDRKQIPADDLNAILEA----------------GAYAPSGMHYETWHFTAVCNTVKLEELNE--RIK 68 (190)
T ss_dssp HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCHHHHHHHHH--HHH
T ss_pred HHHHHHhchhhhcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEECHHHHHHHHH--HHH
Confidence 4444444 3467899999999999998 588999999999999887653 122211 000
Q ss_pred EecCCCCchhhhccCCchh---ccc--cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCc
Q 006333 211 HYAPKEHALELRAKIPSRF---DLF--NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWD 285 (650)
Q Consensus 211 hY~p~~h~L~~l~~~~~~~---~~~--~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~ 285 (650)
. .+. ...+... ... ...+.+||++|+++++.. .++..+|+|+++||++|+|+++|||
T Consensus 69 ~------~~~--~~~~~~~~~~~~~~~~~~~~~Ap~~i~~~~~~~----------~~~~~~d~g~a~~nl~LaA~~~Glg 130 (190)
T 3ek3_A 69 G------AFA--KSDDKHLRERGHSETYCCYYHAPTLVIVSNEPK----------QWWAGMDCACAIENMFLAATSLGIA 130 (190)
T ss_dssp H------HHH--TCCCHHHHHHHTCSSCCTTTTCSEEEEEEECSS----------STTHHHHHHHHHHHHHHHHHHTTCE
T ss_pred H------HHH--hcccHHHHHHhhccccchhcCCCeEEEEEecCC----------CCccHhHHHHHHHHHHHHHHHCCCc
Confidence 0 000 0000000 000 124678999999988743 2567899999999999999999999
Q ss_pred eEEeccc----CHHH---HHHHhCCCCCCcceeeeccc
Q 006333 286 VKILEGM----GYKE---LKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 286 ~~~i~~f----~d~~---l~~lLgLd~~~E~v~~~~~i 316 (650)
+||++++ +++. +.++|||+.. +.++++++|
T Consensus 131 s~~~~~~~~~~~~~~~~~~~~~l~lp~~-~~~~~~l~l 167 (190)
T 3ek3_A 131 SCWINQLGTTCDDPEVRAYLTSLGVPEN-HKVYGCVAL 167 (190)
T ss_dssp EEEECTTTTTTTSHHHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred eEEeccchhhccChhHHHHHHHcCCCCC-cEEEEEEEE
Confidence 9999974 5554 8999999764 578888888
No 86
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*
Probab=99.40 E-value=3.8e-13 Score=137.77 Aligned_cols=159 Identities=13% Similarity=0.179 Sum_probs=101.9
Q ss_pred chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCee
Q 006333 136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFV 209 (650)
Q Consensus 136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGv 209 (650)
.+++.+..| .+.+++|+.++|.+||+. .|.+||++|++||+++|+... .+.|.. .+
T Consensus 56 ~~~e~i~~RRSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~fivv~~~~~~~~l~~--~~ 117 (259)
T 3gb5_A 56 EFYELLNKRRSVRFISSEHVPMEVIENVIKA----------------AGTAPSGAHTEPWTFVVVKDPDMKHKIRE--II 117 (259)
T ss_dssp HHHHHHHTCCCCSCBCCCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCHHHHHHHHH--HH
T ss_pred HHHHHHHHCcchhhcCCCCCCHHHHHHHHHH----------------HHHCCCcCCCCCeEEEEEeCHHHHHHHHH--HH
Confidence 344555543 467899999999999998 588999999999999888753 122221 00
Q ss_pred e-----EecCCCC-ch-hhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhch-hhhHHHHHHHHHHHHHHHHHHH
Q 006333 210 A-----HYAPKEH-AL-ELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER-AFRYCNHDVGHAIAAVAMAAAE 281 (650)
Q Consensus 210 Y-----hY~p~~h-~L-~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r-ayR~~~lDaG~~~q~l~LaA~a 281 (650)
. .|..... .. ..+.... ....+.++.+||++|+++++..+.. ..|.+ ...+..+|+|+++|||+|+|++
T Consensus 118 ~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~~~AP~lIvv~~~~~~~~-~~g~~~~~~~~~~dagiA~~nllLAA~a 194 (259)
T 3gb5_A 118 EEEEEINYMKRMGKRWVTDLKKLR--TNWIKEYLDTAPVLILIFKQVHGFA-ANGKKKVHYYNEISVSIACGLLLAALQN 194 (259)
T ss_dssp HHTCCC------------------------CTHHHHSSEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhcchhhHHHHHHHH--HHHhhHHhcCCCEEEEEEEeccccc-ccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 0 0100000 00 0000000 0001234568999999998754321 22332 2346788999999999999999
Q ss_pred cCCceEEecccCH-HHHHHHhCCCCCCcceeeeccc
Q 006333 282 LGWDVKILEGMGY-KELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 282 lGl~~~~i~~f~d-~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|||+|++++|+. +.++++|||+.. +.++++++|
T Consensus 195 lGLGs~~~g~~~~~~~vr~~LglPe~-~~~v~~iai 229 (259)
T 3gb5_A 195 AGLVTVTTTPLNCGPRLRVLLGRPSH-EKLLVLLPV 229 (259)
T ss_dssp TTCBCCCBCCGGGHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred CCCeEEEecCcCcHHHHHHhcCcCCC-CEEEEEEEe
Confidence 9999999999986 899999999875 578888888
No 87
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=99.39 E-value=5.4e-13 Score=133.84 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=103.6
Q ss_pred hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cc----cC---
Q 006333 137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ES----LC--- 204 (650)
Q Consensus 137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~g----L~--- 204 (650)
+.+.+..| .+.++||+.++|.+||+. .|.+||++|+|||+++|+.... .. +.
T Consensus 9 ~~~~i~~RRSvR~f~~~pV~~e~l~~il~a----------------A~~APS~~N~Qpw~fiVv~~~~~~~l~~~~~~~~ 72 (230)
T 3gr3_A 9 IFQSILSRKSIRAFTDQPVTQETIREILKL----------------AARAPSGTNLQPWQVIVLTGKILQKVGQELSQLV 72 (230)
T ss_dssp HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCeehhccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEeChHHHHHHHHHHHHH
Confidence 44555443 467899999999999998 5889999999999999886531 00 10
Q ss_pred -CC-C--eeeEecCCCCc--h-hhhc----------cCCchh--c-----cccccCCCCcEEEEEeeechhHHHhhhchh
Q 006333 205 -DS-P--FVAHYAPKEHA--L-ELRA----------KIPSRF--D-----LFNNFFPKNSFLVGFSSIFWREAWKYGERA 260 (650)
Q Consensus 205 -~~-p--GvYhY~p~~h~--L-~~l~----------~~~~~~--~-----~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra 260 (650)
.+ + ..|.|.+..+. + .... .+.... . ..+..+.+||++|+++++-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~AP~~i~v~~~~~~--------- 143 (230)
T 3gr3_A 73 LSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAKNFLFYGAPVGLLFTIDHDM--------- 143 (230)
T ss_dssp HTTCCCCCSSCCSCSSCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGGGGCSEEEEEEEETTC---------
T ss_pred hcCCCccccccccchhhhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhhhhcCCCEEEEEEecCCc---------
Confidence 00 0 12222222111 0 0000 000000 0 001135689999999886321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHHhCCCCCCcceeeeccc
Q 006333 261 FRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 261 yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
-.+.++|+|+++||++|+|+++|||+||+++|+ ++.++++|||+.. +.++++++|
T Consensus 144 ~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~~-~~~~~~i~l 200 (230)
T 3gr3_A 144 EMGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPSD-RHIICGMAL 200 (230)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTCEEEEEGGGGGGHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHCCCceeeecccccchHHHHHHcCcCCC-ceEEEEEEE
Confidence 145679999999999999999999999999998 7999999999864 578888888
No 88
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=99.39 E-value=1.2e-12 Score=127.84 Aligned_cols=148 Identities=12% Similarity=-0.033 Sum_probs=98.5
Q ss_pred CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccc-cccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 145 LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSL-RVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 145 ~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~-R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
.+.++ + +.++|.+||+. . |.+||++|+|||+++|+... .+. .++.. ...+.+..+
T Consensus 15 ~f~~~~~-~~e~l~~il~a----------------a~~~APS~~n~Qpw~f~vv~~~--~~~---~l~~~-~~~~~~~~~ 71 (202)
T 2wqf_A 15 ALGRNVQ-DEEKVIETIKE----------------AVRFSPTAFNSQTGRLLILTGD--AQD---KLWDE-IVAPELKAA 71 (202)
T ss_dssp CEECCCS-CHHHHHHHHHH----------------HHHTSCCGGGCCCEEEEEEEHH--HHH---HHHHH-THHHHHHHH
T ss_pred hcCCCCC-CHHHHHHHHHH----------------HHHhCCCccCCCCeEEEEEECh--HHH---HHHHH-HHHHHHhhc
Confidence 45666 8 99999999998 5 78999999999999888653 121 11110 000111100
Q ss_pred c--c-CCchhc----cccccCCCCcEEEEEeeechhH------HHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333 223 A--K-IPSRFD----LFNNFFPKNSFLVGFSSIFWRE------AWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL 289 (650)
Q Consensus 223 ~--~-~~~~~~----~~~~~~~~a~~~iv~ta~~~r~------~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i 289 (650)
. . .+.... .....+..++..++++...... ..+|+++..++..+|+|+++|||+|+|+++|||+|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~ 151 (202)
T 2wqf_A 72 MEAQGVPESAWDNTRAKLDGFKAAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQ 151 (202)
T ss_dssp HHC------------CHHHHHHTSSEEEEEEEEHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccCCHHHHHhhHHHHHHHHhcCCeEEEEeCchHHHHHHhhccchhhcchhhhHHHHHHHHHHHHHHHHHCCCccchh
Confidence 0 0 000000 0000123566666666654322 2346666678889999999999999999999999999
Q ss_pred c--ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 290 E--GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 290 ~--~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+ +|+++.++++|||+. .+.++++++|
T Consensus 152 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l 179 (202)
T 2wqf_A 152 HYNPLIDEAVAKEWNLPE-SWKLRGQLVF 179 (202)
T ss_dssp CCTTTTHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred hcCcccHHHHHHHhCcCc-cceEEEEEEe
Confidence 8 788999999999985 4567788888
No 89
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2
Probab=99.39 E-value=1.4e-12 Score=130.29 Aligned_cols=86 Identities=3% Similarity=-0.101 Sum_probs=66.1
Q ss_pred cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccccc-ccCCCCCCcceEEEEEeCCccccCCCCee
Q 006333 135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR-VNPSSGNLHPTEAYIIAPAIESLCDSPFV 209 (650)
Q Consensus 135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R-~~PSaG~l~P~e~Yvv~~~v~gL~~~pGv 209 (650)
..+.+.+..| .+.+++|+.++|.+||+. .| .+|| + |. . ++
T Consensus 13 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~r~APS----~----------v~---~--~l 57 (218)
T 1vkw_A 13 MNIFEAIENRHSVRDFLERKMPERVKDDIENL----------------LVKFITK----K----------LD---W--KI 57 (218)
T ss_dssp CCHHHHHHHCCBCCCBCCSCCCHHHHHHHHHC----------------CCCCSSC----C----------CC---C--EE
T ss_pred HHHHHHHHhCccccccCCCCCCHHHHHHHHHH----------------HHHhCCH----H----------HH---h--ce
Confidence 3455555543 467899999999999987 45 8999 1 11 1 22
Q ss_pred eEecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333 210 AHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL 289 (650)
Q Consensus 210 YhY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i 289 (650)
.+.+||++|+++++..+ ....|+|+++||++|+|+++|||+||+
T Consensus 58 -------------------------~~~~Ap~~ivv~~~~~~-----------~~~~d~g~a~~nl~LaA~~lGlgtcw~ 101 (218)
T 1vkw_A 58 -------------------------NLSSFPSYIYAKAEKHF-----------DELVEYGFQGEQIVLFLTAQGFGTCWM 101 (218)
T ss_dssp -------------------------ECSSSSEEEECCCCSSH-----------HHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------------------------eeCCCCEEEEEEEeCCc-----------ChHHHHHHHHHHHHHHHHHCCCcEEEe
Confidence 25688999999887431 345899999999999999999999999
Q ss_pred cc
Q 006333 290 EG 291 (650)
Q Consensus 290 ~~ 291 (650)
++
T Consensus 102 ~~ 103 (218)
T 1vkw_A 102 AR 103 (218)
T ss_dssp SC
T ss_pred cc
Confidence 98
No 90
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1
Probab=99.37 E-value=9.6e-13 Score=129.48 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=100.5
Q ss_pred CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccc-cccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333 145 LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSL-RVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR 222 (650)
Q Consensus 145 ~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~-R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l 222 (650)
.+.++ +|+.++|.+||+. . |.+||++|+|||+++|+... +... . +++ .....+
T Consensus 16 ~f~~~~~v~~e~l~~il~a----------------a~~~APS~~n~Qpw~f~vv~~~-~~~~----~--~~~--~~~~~l 70 (208)
T 2ifa_A 16 ALGKTVDLSKAELVALIQN----------------AIKQAPSAFNSQTSRALVLFGQ-DSQD----F--WNK--IAYSEL 70 (208)
T ss_dssp CEESCCSSCHHHHHHHHHH----------------HHHTSCCGGGCCCEEEEEEEHH-HHHH----H--HHT--HHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHH----------------HHhcCCCccccCCeEEEEEECH-HHHH----H--HHH--HHHHHH
Confidence 46677 9999999999998 5 78999999999999887653 1110 0 000 000011
Q ss_pred ccCCchhcccc------ccCCCCcEEEEEeeechhH------HHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333 223 AKIPSRFDLFN------NFFPKNSFLVGFSSIFWRE------AWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE 290 (650)
Q Consensus 223 ~~~~~~~~~~~------~~~~~a~~~iv~ta~~~r~------~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~ 290 (650)
........ +. ..+..++.+|+++++.... ...|+++..++..+|+|+++||++|+|+++|||+||++
T Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~ 149 (208)
T 2ifa_A 71 EKVTPAEA-FAGTKAKLESFAAGVGTILLFEDQAVVRNLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQH 149 (208)
T ss_dssp HTTSCHHH-HHHHHHHHHHHHTSSEEEEEEEEHHHHHHHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBC
T ss_pred hhcCChhh-hhhhhHHHHHHhhcceEEEEEecHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHHHHHCCCccchhc
Confidence 11100000 00 1245788888888875432 12355555577889999999999999999999999887
Q ss_pred --ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 291 --GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 291 --~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
+|+++.++++|||+.. +.++++++|
T Consensus 150 ~~~~~~~~v~~~l~lp~~-~~~~~~i~l 176 (208)
T 2ifa_A 150 YNPLVDAQVAEKYDLPTN-WKMRAQIPF 176 (208)
T ss_dssp CTTTTHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred ccccchHHHHHHcCCCcc-ceEEEEEEe
Confidence 6789999999999854 567788888
No 91
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*
Probab=99.33 E-value=2.6e-12 Score=128.61 Aligned_cols=151 Identities=10% Similarity=-0.002 Sum_probs=99.8
Q ss_pred hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeE
Q 006333 137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAH 211 (650)
Q Consensus 137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYh 211 (650)
+.+.+..| .+.+++|+.++|.+||+. .|.+||++|+|||+++|+... .+.|.. .++.
T Consensus 19 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~l~~--~~~~ 80 (235)
T 2wzv_A 19 AERLIKGRRAVRAFRPDEVPEETMRAVFEL----------------AGHAPSNSNTQPWHVEVVSGAARDRLAE--ALVT 80 (235)
T ss_dssp HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCCEEEEECHHHHHHHHH--HHHH
T ss_pred HHHHHHhCceecCCCCCCCCHHHHHHHHHH----------------HHhCCcccCCCCcEEEEecCHHHHHHHH--HHHH
Confidence 34445443 467889999999999998 588999999999999887643 122211 1211
Q ss_pred ec---C-CCCchhhhc---------------------cCCch--h---ccc-cc-cCCCCcEEEEEeeechhHHHhhhch
Q 006333 212 YA---P-KEHALELRA---------------------KIPSR--F---DLF-NN-FFPKNSFLVGFSSIFWREAWKYGER 259 (650)
Q Consensus 212 Y~---p-~~h~L~~l~---------------------~~~~~--~---~~~-~~-~~~~a~~~iv~ta~~~r~~~KYg~r 259 (650)
.. + ..+-+.... ..... . ... .. .+.++|++|++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~i~~~~~~~~-------- 152 (235)
T 2wzv_A 81 AHAEERVTVDFPYREGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGYNTESLRFYGAPHVAMLFAPNNT-------- 152 (235)
T ss_dssp HHHTTCCBCSSCCCTTSSCHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHTGGGCSEEEEEEEETTC--------
T ss_pred HHHhcccCccccccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhcceecCCCEEEEEecCccc--------
Confidence 00 0 001000000 00000 0 000 01 24578888888776321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHHhCCCCCCcceeeeccc
Q 006333 260 AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 260 ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
..+..+|+|+++||++|+|+++|||+||++++ +++.++++||| +.+.++++++|
T Consensus 153 -~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~~~v~~~L~l--~~~~~~~~i~l 208 (235)
T 2wzv_A 153 -EARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAELGV--ENRKLLMGISF 208 (235)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGBHHHHHHHHTC--CSEEEEEEEEE
T ss_pred -ccccHHHHHHHHHHHHHHHHHCCCccchhhhhccchHHHHHHcCC--CCcceEEEEEe
Confidence 24578999999999999999999999999986 78999999999 45678888888
No 92
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=99.29 E-value=6.3e-12 Score=122.48 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=100.1
Q ss_pred hhhhhccC----CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333 137 LYSSLFTS----LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH 211 (650)
Q Consensus 137 ~~~~l~~~----~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh 211 (650)
+.+.+..| .+.++ +|+.++|.+||+. .|.+||++|+|||+++|+... .+. .++.
T Consensus 8 ~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~--~~~---~l~~ 66 (200)
T 1ywq_A 8 LKEAIVNRRSIRKVTKNDAITKERIEEVLKT----------------ALHAPTSFNMQSGRMVVLMDG--EHE---KFWD 66 (200)
T ss_dssp HHHHHHHCCCCCCEECCTTSCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEEEHH--HHH---HHHH
T ss_pred HHHHHHhhhhHHhhCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCH--HHH---HHHH
Confidence 44555443 35676 9999999999998 588999999999999887653 121 1111
Q ss_pred ecCCCCchhhhccCC-ch--hccccccCCCCcEEEEEeeechhHH------HhhhchhhhHHHHHHHHHHHHHHHHHHHc
Q 006333 212 YAPKEHALELRAKIP-SR--FDLFNNFFPKNSFLVGFSSIFWREA------WKYGERAFRYCNHDVGHAIAAVAMAAAEL 282 (650)
Q Consensus 212 Y~p~~h~L~~l~~~~-~~--~~~~~~~~~~a~~~iv~ta~~~r~~------~KYg~rayR~~~lDaG~~~q~l~LaA~al 282 (650)
. ..+.+..+.... .. ...++. +..++.++++.+...... ..|+++..++..+|+|+++||++|+|+++
T Consensus 67 ~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~ 143 (200)
T 1ywq_A 67 I--VKETLRARVPAENFEATVERLKG-FHAGVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAE 143 (200)
T ss_dssp H--HHHHHHHHSCHHHHHHHHGGGHH-HHTSSEEEEEEEEHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHhcCChhhhhhhHHHHHH-HhhcceEEEEecCchHHHHHHHhCccccccccchHHHhhHHHHHHHHHHHHHC
Confidence 0 001111111000 00 000111 224555555655543211 12445555678899999999999999999
Q ss_pred CCceEEec--ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333 283 GWDVKILE--GMGYKELKKLMGLDIFPEFVIPSKPI 316 (650)
Q Consensus 283 Gl~~~~i~--~f~d~~l~~lLgLd~~~E~v~~~~~i 316 (650)
|||+|+++ ++.++.++++|||+.. +.++++++|
T Consensus 144 Glgs~~~~~~~~~~~~~~~~l~lp~~-~~~~~~i~l 178 (200)
T 1ywq_A 144 GIGASLQHYNPIVDAEVKETWNIPAE-WSLVGQMPF 178 (200)
T ss_dssp TCEECCBCCTTTTHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred CCccchhhcccccHHHHHHHhCCCCC-ceEEEEEEe
Confidence 99999876 6788999999999854 567788888
No 93
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2
Probab=99.20 E-value=4.2e-11 Score=119.54 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=84.3
Q ss_pred CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc-cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL-PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL 491 (650)
Q Consensus 413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~-Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl 491 (650)
..++.++|++|||+|+|++ ++|+.++|.+||+++. -. |. + |+
T Consensus 12 ~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~r~A--------------PS---------~-------v~------ 54 (218)
T 1vkw_A 12 HMNIFEAIENRHSVRDFLE-RKMPERVKDDIENLLVKFI--------------TK---------K-------LD------ 54 (218)
T ss_dssp CCCHHHHHHHCCBCCCBCC-SCCCHHHHHHHHHCCCCCS--------------SC---------C-------CC------
T ss_pred HHHHHHHHHhCccccccCC-CCCCHHHHHHHHHHHHHhC--------------CH---------H-------HH------
Confidence 3579999999999999997 7999999999998774 11 11 0 10
Q ss_pred eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333 492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW 571 (650)
Q Consensus 492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~ 571 (650)
+. + ++.+|+++|+++++...
T Consensus 55 -------~~----------------------------l-----------------~~~~Ap~~ivv~~~~~~-------- 74 (218)
T 1vkw_A 55 -------WK----------------------------I-----------------NLSSFPSYIYAKAEKHF-------- 74 (218)
T ss_dssp -------CE----------------------------E-----------------ECSSSSEEEECCCCSSH--------
T ss_pred -------hc----------------------------e-----------------eeCCCCEEEEEEEeCCc--------
Confidence 00 1 34567888888777431
Q ss_pred cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333 572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD 634 (650)
Q Consensus 572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d 634 (650)
....++|+++|||+|+|+++|||+||+|+ .. ++.+++.++||||.++
T Consensus 75 ---~~~~d~g~a~~nl~LaA~~lGlgtcw~~~-~~------------~~~~~~~i~lGyp~~~ 121 (218)
T 1vkw_A 75 ---DELVEYGFQGEQIVLFLTAQGFGTCWMAR-SP------------HPDVPYIIVFGYPRTR 121 (218)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCEEEEESC-CS------------STTCSCEEEEECBSCC
T ss_pred ---ChHHHHHHHHHHHHHHHHHCCCcEEEecc-CC------------CceEEEEEEEeccCCc
Confidence 23589999999999999999999999998 32 3468999999999875
No 94
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}
Probab=97.31 E-value=0.00033 Score=73.81 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=56.0
Q ss_pred CCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH-----HHHHHHhCCCCCCcce
Q 006333 236 FPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY-----KELKKLMGLDIFPEFV 310 (650)
Q Consensus 236 ~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d-----~~l~~lLgLd~~~E~v 310 (650)
+.+++.++++++.-. -+..++|+|.++|+++|+|+++||++|+++.+.+ +.|+++||++. .+
T Consensus 230 ~~~ap~~~vl~~~~d----------~~~~~~d~G~a~q~~lLaAt~~GL~t~~~~~~~e~~~~~~~vr~~lg~p~---~~ 296 (330)
T 2ymv_A 230 NNDAATIVVLSTDGY----------SREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDA---CP 296 (330)
T ss_dssp SSCCCEEEEEEESCC----------SHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGSSHHHHHHHHTTSSTTC---EE
T ss_pred ccCCCeEEEEEeCCC----------CHHHHHHHHHHHHHHHHHHHHCChhhccchhhhhhhHHHHHHHHHhCCCC---ce
Confidence 457888888887622 3467899999999999999999999999998664 78999999973 36
Q ss_pred eeeccc
Q 006333 311 IPSKPI 316 (650)
Q Consensus 311 ~~~~~i 316 (650)
+.++.|
T Consensus 297 ~~~i~l 302 (330)
T 2ymv_A 297 QVLVRI 302 (330)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777777
Done!