BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006334
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 23/251 (9%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI 84
P R Y G V+ GG G L V + W+++A R + A
Sbjct: 49 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD---RRSTLGAA 105
Query: 85 LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIF 144
+ + GG +G ++ + +++S EW AP + R S V +
Sbjct: 106 VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV----APMNTRRSSVGVGVVGGLLYAV 161
Query: 145 GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY 204
GG L+ + + T W A ++ R V+ N L+ GG G
Sbjct: 162 GGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLV 218
Query: 205 HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG------VGDKHYYN-- 256
+++ D + W ++A + AG A+N +Y++GG + YYN
Sbjct: 219 RKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAVN--GLLYVVGGDDGSCNLASVEYYNPT 275
Query: 257 -DIWILNVSTC 266
D W + VS+C
Sbjct: 276 TDKWTV-VSSC 285
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 17/159 (10%)
Query: 27 ERWGHSACYSHGAVYIFGGCCGGLHFGDVL----MLNLDTMVWSTLATTGQGPGPRDSHS 82
+R H ++G +Y+ GG G G VL + + T W+ L + R +H
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA---RKNHG 195
Query: 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATL--VGDDK 140
+ K+ GG NG ++++ D++ EW + P P + T VG
Sbjct: 196 LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW-----KMVSPMPWKGVTVKCAAVGSIV 250
Query: 141 MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV 179
V+ G G G ++ + + +T +W + + PV
Sbjct: 251 YVLAGFQGVGRLGHILEYNT---ETDKWVANSKVRAFPV 286
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 17/187 (9%)
Query: 89 KMIVFGGTNGYKKVNDLHILDLESKE---WMRPECRGAPPSPRESHT-ATLVGDDKMVIF 144
++ V GG +G +++ + LD + E W AP + R AT +GD M+
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV----APMNVRRGLAGATTLGD--MIYV 117
Query: 145 GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY 204
G +G + + + D +W+ + GD+ R+ V + ++ GG G
Sbjct: 118 SGGFDGSRRHTS-MERYDPNIDQWS---MLGDMQTAREGAGLVVASGVIYCLGGYDGLNI 173
Query: 205 HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVS 264
++ D ++ W+ + + + R+G + +Y++GG + + + N+
Sbjct: 174 LNSVEKYDPHTGHWTNVTPMATK---RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230
Query: 265 TCSWSQL 271
T SW+ +
Sbjct: 231 TDSWTTV 237
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 125 PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV-PRDS 183
P P +S T + D+ V G G A Y D D K W + A P PRD
Sbjct: 7 PVPFKSGTGAI--DNDTVYIGLGSAGTAWYKLDTQAKDKK---WTALAA---FPGGPRDQ 58
Query: 184 HSSNVIANRLFVYGG-----DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
+S I L+V+GG + Q D+ + + +W +L +P AGH
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLX--SHAPXGXAGHVTFV 116
Query: 239 IGTKVYIIGGV 249
K Y+ GGV
Sbjct: 117 HNGKAYVTGGV 127
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 99/259 (38%), Gaps = 62/259 (23%)
Query: 40 VYIFGGCCGGLHFGDVLMLNLDTMV----WSTLATTGQGPG-PRDSHSAILWGHKMIVFG 94
VYI G G LDT W+ LA PG PRD ++ + VFG
Sbjct: 22 VYIGLGSAG------TAWYKLDTQAKDKKWTALAAF---PGGPRDQATSAFIDGNLYVFG 72
Query: 95 G----TNGYKKV-NDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGE 149
G + G +V ND+H + ++ W++ P H T V + K + GG +
Sbjct: 73 GIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSH--APXGXAGHV-TFVHNGKAYVTGGVNQ 129
Query: 150 GEAN-YLNDL---------------HVLDLK----------------TMRWASPAVKGDI 177
N Y DL H D K T +W+ G+
Sbjct: 130 NIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWS---YAGES 186
Query: 178 PVPRDSHSSNV-IANRLFVYGGDCGDQYHGD-IDMLDM--NSLTWSRLAIIGSSPGVRAG 233
P + ++ V ++ ++ G+ D + LD N+L W++LA + S GV G
Sbjct: 187 PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246
Query: 234 HAAINIGTKVYIIGGVGDK 252
A I+ + ++ GG G K
Sbjct: 247 FAGISNDSLIF-AGGAGFK 264
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 49 GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHS--AILWGHKMIVFGGTNG-YKKVNDL 105
+H+ + M N++ ++ + P R H+ I +++++ GG ++ ++D
Sbjct: 418 SIHYDKIDMKNIE-------VSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN 470
Query: 106 HILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYL 155
I D++++EW + + R H+A + D ++I GG EG A L
Sbjct: 471 WIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLL 517
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 87 GHKMIVFGGTNGYKKVNDLHI------LDLESKEWMRPECRGAPPSPRESHTATLVGDDK 140
G+ + GG+N Y+ L + +D+++ E E P R HT T + +
Sbjct: 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEV----PVARMCHTFTTISRNN 452
Query: 141 MVIFGGSGEGEANYLNDLHVLDLKTMRWA 169
++ G + L+D + D+KT W+
Sbjct: 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWS 481
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 26/196 (13%)
Query: 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA---TTGQGPGPRDSHSAILWGHKMIVFG 94
G +Y GG G +H V + W +A T G G A+L + G
Sbjct: 115 GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVG-----VAVL-NRLLYAVG 168
Query: 95 GTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANY 154
G +G ++N E EW P + S V + I+ G +
Sbjct: 169 GFDGTNRLNSAECYYPERNEWRMI----TPMNTIRSGAGVCVLHN--CIYAAGGYDGQDQ 222
Query: 155 LNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS----NVIANRLFVYGGDCGDQYHGDIDM 210
LN + D++T W A P H S V +++V GG G + ++
Sbjct: 223 LNSVERYDVETETWTFVA-------PMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVEC 275
Query: 211 LDMNSLTWSRLAIIGS 226
D +S TWS + + S
Sbjct: 276 YDPDSDTWSEVTRMTS 291
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 26/196 (13%)
Query: 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA---TTGQGPGPRDSHSAILWGHKMIVFG 94
G +Y GG G +H V + W +A T G G A+L + G
Sbjct: 116 GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVG-----VAVL-NRLLYAVG 169
Query: 95 GTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANY 154
G +G ++N E EW P + S V + I+ G +
Sbjct: 170 GFDGTNRLNSAECYYPERNEWRMI----TPMNTIRSGAGVCVLHN--CIYAAGGYDGQDQ 223
Query: 155 LNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS----NVIANRLFVYGGDCGDQYHGDIDM 210
LN + D++T W A P H S V +++V GG G + ++
Sbjct: 224 LNSVERYDVETETWTFVA-------PMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVEC 276
Query: 211 LDMNSLTWSRLAIIGS 226
D +S TWS + + S
Sbjct: 277 YDPDSDTWSEVTRMTS 292
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 329 KIFGN-HWNQAKRRFPG--GVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSK 385
K F N HW ++F G + SKT + GN +G T+ + P +S T+ +
Sbjct: 13 KYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQ 72
Query: 386 KRRAFNSTTV 395
A S +
Sbjct: 73 TYHAHRSDAL 82
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 329 KIFGN-HWNQAKRRFPG--GVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSK 385
K F N HW ++F G + SKT + GN +G T+ + P +S T+ +
Sbjct: 18 KYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQ 77
Query: 386 KRRAFNSTTV 395
A S +
Sbjct: 78 TYHAHRSDAL 87
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 329 KIFGN-HWNQAKRRFPG--GVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSK 385
K F N HW ++F G + SKT + GN +G T+ + P +S T+ +
Sbjct: 23 KYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQ 82
Query: 386 KRRAFNSTTV 395
A S +
Sbjct: 83 TYHAHRSDAL 92
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 135
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 329 KIFGN-HWNQAKRRFPG--GVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSK 385
K F N HW ++F G + SKT + GN +G T+ + P +S T+ +
Sbjct: 25 KYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQ 84
Query: 386 KRRAFNSTTV 395
A S +
Sbjct: 85 TYHAHRSDAL 94
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 18/187 (9%)
Query: 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA---TTGQGPGPRDSHSAILWGHKMIVFG 94
G +Y GG G +H V + W +A T G G A+L + G
Sbjct: 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVG-----VAVL-NRLLYAVG 175
Query: 95 GTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANY 154
G +G ++N E EW A + R ++ + I+ G +
Sbjct: 176 GFDGTNRLNSAECYYPERNEWRXIT---AXNTIRSGAGVCVLHN---CIYAAGGYDGQDQ 229
Query: 155 LNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMN 214
LN + D++T W A R + V R++V GG G + ++ D +
Sbjct: 230 LNSVERYDVETETWTFVAPXKH---RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286
Query: 215 SLTWSRL 221
+ TWS +
Sbjct: 287 TDTWSEV 293
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 329 KIFGN-HWNQAKRRFPG--GVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSK 385
K F N HW ++F G + SKT + GN +G T+ + P +S T+ +
Sbjct: 25 KYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQ 84
Query: 386 KRRAFNSTTV 395
A S +
Sbjct: 85 TYHAHRSDAL 94
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 119 ECRGAPPSPR--ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAV-KG 175
EC A S + ++H + + ++++ + GG E N + + L+ S +
Sbjct: 24 ECYXASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83
Query: 176 DIPVPRDSHSSNVIANRLFVYGG---DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRA 232
+P PR N ++V GG G++ + D S W + P V
Sbjct: 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL---PYVVY 140
Query: 233 GHAAINIGTKVYIIGGVG-DKHYYNDIWILNVSTCSWSQL 271
GH ++ VY+IGG G D+ N + + + W +L
Sbjct: 141 GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,376,786
Number of Sequences: 62578
Number of extensions: 946672
Number of successful extensions: 1623
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 43
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)