Query 006334
Match_columns 650
No_of_seqs 321 out of 2470
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 21:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.9E-41 4E-46 377.9 38.3 300 12-315 150-468 (470)
2 PLN02153 epithiospecifier prot 100.0 4.7E-41 1E-45 360.4 37.3 305 10-315 4-339 (341)
3 KOG4693 Uncharacterized conser 100.0 4.9E-40 1.1E-44 322.3 24.0 285 13-301 2-313 (392)
4 PLN02193 nitrile-specifier pro 100.0 6.8E-36 1.5E-40 333.2 36.5 283 28-315 111-410 (470)
5 KOG4441 Proteins containing BT 100.0 5.3E-36 1.1E-40 339.2 29.8 272 24-315 272-546 (571)
6 KOG4441 Proteins containing BT 100.0 1.2E-35 2.6E-40 336.3 28.5 262 7-288 305-567 (571)
7 TIGR03548 mutarot_permut cycli 100.0 1.3E-34 2.9E-39 308.2 31.5 270 26-308 2-321 (323)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.9E-34 4E-39 309.8 32.6 273 24-314 4-345 (346)
9 KOG0379 Kelch repeat-containin 100.0 7.5E-35 1.6E-39 324.7 30.2 294 20-315 53-357 (482)
10 PLN02153 epithiospecifier prot 100.0 1.5E-33 3.3E-38 302.3 32.0 253 61-316 5-285 (341)
11 PHA02713 hypothetical protein; 100.0 6.6E-34 1.4E-38 322.8 30.2 244 39-301 259-523 (557)
12 PHA02713 hypothetical protein; 100.0 3.9E-34 8.5E-39 324.7 27.8 247 8-273 277-542 (557)
13 PRK14131 N-acetylneuraminic ac 100.0 7.2E-33 1.6E-37 300.9 32.0 276 22-315 23-368 (376)
14 KOG4152 Host cell transcriptio 100.0 1.1E-33 2.3E-38 297.1 22.0 316 8-326 12-374 (830)
15 KOG4693 Uncharacterized conser 100.0 2.7E-33 5.8E-38 275.0 19.1 240 10-250 51-312 (392)
16 PHA03098 kelch-like protein; P 100.0 4E-32 8.6E-37 308.2 29.5 232 28-273 285-520 (534)
17 KOG0379 Kelch repeat-containin 100.0 1.4E-31 3E-36 298.6 28.1 244 70-315 53-301 (482)
18 KOG1230 Protein containing rep 100.0 4.4E-32 9.5E-37 280.1 20.2 251 20-273 59-349 (521)
19 PHA03098 kelch-like protein; P 100.0 1.1E-30 2.5E-35 296.3 30.4 256 38-315 251-511 (534)
20 PHA02790 Kelch-like protein; P 100.0 1.1E-29 2.4E-34 284.1 28.6 212 33-272 267-478 (480)
21 KOG1230 Protein containing rep 100.0 4E-30 8.7E-35 265.6 20.5 241 73-315 62-340 (521)
22 TIGR03548 mutarot_permut cycli 100.0 5.2E-29 1.1E-33 265.2 27.0 223 13-251 51-314 (323)
23 PRK14131 N-acetylneuraminic ac 100.0 1.1E-28 2.4E-33 268.1 27.5 244 12-270 61-374 (376)
24 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-28 4E-33 263.4 27.7 236 11-262 39-344 (346)
25 PHA02790 Kelch-like protein; P 100.0 1.4E-27 3.1E-32 267.1 29.2 204 83-315 267-470 (480)
26 KOG4152 Host cell transcriptio 100.0 1.9E-28 4.2E-33 257.7 18.8 257 5-264 59-363 (830)
27 COG3055 Uncharacterized protei 99.7 5.5E-16 1.2E-20 159.7 22.3 276 24-315 33-374 (381)
28 KOG2437 Muskelin [Signal trans 99.7 2E-18 4.3E-23 182.5 0.9 305 10-314 236-611 (723)
29 COG3055 Uncharacterized protei 99.7 1.8E-15 3.9E-20 156.0 21.3 241 9-265 66-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 2.8E-15 6E-20 159.0 5.4 264 61-325 237-544 (723)
31 PF13964 Kelch_6: Kelch motif 98.9 3.1E-09 6.7E-14 81.3 6.5 49 77-128 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 98.9 3.1E-09 6.7E-14 81.3 6.2 49 27-78 1-50 (50)
33 PLN02772 guanylate kinase 98.7 5.7E-08 1.2E-12 104.4 11.5 92 20-113 17-110 (398)
34 PF13415 Kelch_3: Galactose ox 98.7 4.7E-08 1E-12 74.5 6.1 47 37-86 1-49 (49)
35 PLN02772 guanylate kinase 98.7 1.2E-07 2.5E-12 102.1 11.4 88 75-166 22-110 (398)
36 PF13415 Kelch_3: Galactose ox 98.7 4.4E-08 9.4E-13 74.6 5.7 47 87-136 1-49 (49)
37 PF03089 RAG2: Recombination a 98.6 4.5E-06 9.7E-11 84.6 20.4 212 75-295 20-280 (337)
38 PF07646 Kelch_2: Kelch motif; 98.6 1.2E-07 2.5E-12 72.3 6.1 45 27-71 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 98.6 7.1E-08 1.5E-12 73.3 4.6 45 27-71 1-47 (49)
40 PF01344 Kelch_1: Kelch motif; 98.6 1.3E-07 2.9E-12 71.0 5.7 45 27-71 1-46 (47)
41 PF07646 Kelch_2: Kelch motif; 98.6 1.6E-07 3.4E-12 71.6 6.1 43 77-119 1-46 (49)
42 PF13418 Kelch_4: Galactose ox 98.5 1.2E-07 2.7E-12 72.0 4.2 48 127-178 1-48 (49)
43 PF01344 Kelch_1: Kelch motif; 98.5 2.1E-07 4.5E-12 70.0 4.8 44 180-223 1-45 (47)
44 PF07250 Glyoxal_oxid_N: Glyox 98.4 7.6E-06 1.6E-10 83.3 17.0 171 31-222 2-206 (243)
45 PF13854 Kelch_5: Kelch motif 98.4 5.2E-07 1.1E-11 66.4 5.5 39 24-62 1-41 (42)
46 PF03089 RAG2: Recombination a 98.4 1.3E-05 2.8E-10 81.3 16.8 174 124-303 19-232 (337)
47 PF13854 Kelch_5: Kelch motif 98.3 8.4E-07 1.8E-11 65.3 5.4 39 74-112 1-41 (42)
48 smart00612 Kelch Kelch domain. 98.2 2.7E-06 5.8E-11 63.2 4.7 47 39-88 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.2 0.00012 2.7E-09 74.5 18.0 150 103-273 46-207 (243)
50 smart00612 Kelch Kelch domain. 98.1 3.2E-06 7E-11 62.8 4.8 47 192-241 1-47 (47)
51 TIGR01640 F_box_assoc_1 F-box 98.0 0.0032 6.9E-08 63.7 24.8 200 53-266 14-230 (230)
52 TIGR01640 F_box_assoc_1 F-box 97.5 0.025 5.5E-07 57.1 22.8 184 103-298 14-215 (230)
53 PRK11138 outer membrane biogen 97.5 0.072 1.6E-06 58.4 27.8 248 10-315 43-312 (394)
54 PRK11138 outer membrane biogen 97.3 0.11 2.5E-06 56.9 25.6 196 53-296 170-382 (394)
55 TIGR03300 assembly_YfgL outer 96.9 0.9 2E-05 49.3 28.4 224 31-315 59-297 (377)
56 PF13360 PQQ_2: PQQ-like domai 96.7 0.82 1.8E-05 45.6 25.1 186 33-267 32-233 (238)
57 TIGR03300 assembly_YfgL outer 96.6 0.91 2E-05 49.3 25.1 209 35-298 143-369 (377)
58 cd00094 HX Hemopexin-like repe 95.7 0.78 1.7E-05 45.2 17.7 154 83-267 12-178 (194)
59 PF08450 SGL: SMP-30/Gluconola 95.6 3 6.4E-05 42.3 24.0 200 37-272 11-221 (246)
60 cd00094 HX Hemopexin-like repe 95.6 1 2.2E-05 44.4 17.7 153 33-217 12-178 (194)
61 PF12768 Rax2: Cortical protei 95.3 0.75 1.6E-05 48.2 16.5 113 102-223 15-130 (281)
62 PF07893 DUF1668: Protein of u 94.9 0.73 1.6E-05 49.8 15.5 118 137-273 75-216 (342)
63 PRK05137 tolB translocation pr 94.7 7.8 0.00017 43.1 23.7 193 53-272 226-420 (435)
64 PF13360 PQQ_2: PQQ-like domai 94.5 5.5 0.00012 39.6 26.5 209 53-316 3-231 (238)
65 TIGR02800 propeller_TolB tol-p 94.4 9.2 0.0002 41.8 26.1 193 51-273 168-363 (417)
66 PRK00178 tolB translocation pr 94.2 11 0.00024 41.7 26.2 190 54-273 180-372 (430)
67 KOG2055 WD40 repeat protein [G 94.2 1.2 2.7E-05 48.6 14.7 152 87-267 224-377 (514)
68 PRK13684 Ycf48-like protein; P 94.2 9.6 0.00021 41.0 24.1 241 11-299 74-322 (334)
69 PF02897 Peptidase_S9_N: Proly 94.2 6.2 0.00014 43.3 21.1 211 37-271 134-363 (414)
70 PRK04792 tolB translocation pr 93.7 14 0.00031 41.3 26.8 192 52-273 197-391 (448)
71 PF12768 Rax2: Cortical protei 93.2 0.84 1.8E-05 47.9 11.3 123 143-273 2-130 (281)
72 cd00216 PQQ_DH Dehydrogenases 93.0 20 0.00042 40.7 28.1 167 102-296 255-454 (488)
73 PRK05137 tolB translocation pr 93.0 18 0.00039 40.2 26.4 230 52-315 181-412 (435)
74 PF07893 DUF1668: Protein of u 92.7 3.3 7.1E-05 44.8 15.4 118 36-172 75-215 (342)
75 KOG2055 WD40 repeat protein [G 92.6 4.2 9.1E-05 44.6 15.6 153 38-217 225-377 (514)
76 TIGR02800 propeller_TolB tol-p 92.6 18 0.0004 39.4 22.5 182 53-265 214-398 (417)
77 PF08450 SGL: SMP-30/Gluconola 92.5 11 0.00024 38.1 18.4 179 37-246 51-243 (246)
78 PRK04922 tolB translocation pr 92.4 21 0.00046 39.7 25.3 190 52-273 183-377 (433)
79 PF02191 OLF: Olfactomedin-lik 92.1 12 0.00025 38.7 17.8 186 37-246 30-236 (250)
80 PF09910 DUF2139: Uncharacteri 91.7 5.8 0.00013 41.5 14.7 150 81-246 40-219 (339)
81 PRK04922 tolB translocation pr 91.6 26 0.00055 39.0 22.8 185 52-267 227-414 (433)
82 PF02897 Peptidase_S9_N: Proly 91.4 8.9 0.00019 42.1 17.4 210 39-272 182-412 (414)
83 PRK03629 tolB translocation pr 90.9 30 0.00065 38.5 26.7 239 39-315 166-406 (429)
84 PLN00033 photosystem II stabil 90.8 30 0.00066 38.2 26.4 245 10-298 117-389 (398)
85 PRK11028 6-phosphogluconolacto 90.6 25 0.00055 37.1 23.3 236 39-315 3-258 (330)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.6 37 0.0008 39.0 24.0 214 32-267 64-336 (527)
87 PRK04792 tolB translocation pr 90.5 34 0.00073 38.3 22.3 185 101-316 196-383 (448)
88 TIGR03866 PQQ_ABC_repeats PQQ- 90.0 24 0.00051 35.8 22.9 186 39-268 2-191 (300)
89 PRK00178 tolB translocation pr 89.9 35 0.00076 37.6 22.7 182 53-266 223-408 (430)
90 PF02191 OLF: Olfactomedin-lik 89.8 17 0.00036 37.6 16.3 151 30-197 71-237 (250)
91 cd00216 PQQ_DH Dehydrogenases 88.8 47 0.001 37.6 29.8 77 34-117 106-191 (488)
92 COG1520 FOG: WD40-like repeat 87.7 45 0.00097 36.1 23.1 201 34-271 65-277 (370)
93 smart00284 OLF Olfactomedin-li 87.7 37 0.0008 35.1 19.2 188 37-246 34-241 (255)
94 PF08268 FBA_3: F-box associat 87.6 11 0.00024 34.3 12.2 85 35-120 3-89 (129)
95 cd00200 WD40 WD40 domain, foun 87.6 29 0.00063 33.8 25.5 187 38-268 21-211 (289)
96 PRK04043 tolB translocation pr 87.5 52 0.0011 36.6 23.2 190 53-272 213-408 (419)
97 PRK02889 tolB translocation pr 87.2 53 0.0011 36.4 24.6 190 53-272 176-368 (427)
98 TIGR03866 PQQ_ABC_repeats PQQ- 87.0 37 0.0008 34.3 25.7 147 38-218 43-191 (300)
99 PRK01742 tolB translocation pr 86.6 57 0.0012 36.1 22.7 206 52-299 183-391 (429)
100 PRK13684 Ycf48-like protein; P 86.6 50 0.0011 35.5 25.7 242 8-298 30-278 (334)
101 smart00284 OLF Olfactomedin-li 86.5 34 0.00073 35.4 16.0 151 29-196 75-241 (255)
102 PF14870 PSII_BNR: Photosynthe 86.1 51 0.0011 35.1 22.7 243 11-300 4-253 (302)
103 cd00200 WD40 WD40 domain, foun 86.1 35 0.00076 33.2 24.0 186 38-266 63-251 (289)
104 PF08268 FBA_3: F-box associat 86.0 18 0.00039 32.9 12.6 85 188-273 3-89 (129)
105 PF09910 DUF2139: Uncharacteri 85.9 36 0.00078 35.9 15.6 131 50-196 75-219 (339)
106 KOG0649 WD40 repeat protein [G 85.1 49 0.0011 33.9 16.8 118 131-271 118-242 (325)
107 COG4257 Vgb Streptogramin lyas 83.7 60 0.0013 34.0 16.8 185 54-273 125-314 (353)
108 TIGR01624 LRP1_Cterm LRP1 C-te 82.5 2.2 4.9E-05 31.9 3.8 33 523-555 17-50 (50)
109 PF03178 CPSF_A: CPSF A subuni 82.0 27 0.00059 36.9 13.8 149 139-315 42-202 (321)
110 PF10282 Lactonase: Lactonase, 81.8 79 0.0017 33.9 23.6 244 42-315 3-275 (345)
111 PRK03629 tolB translocation pr 81.4 94 0.002 34.5 22.8 190 53-271 223-413 (429)
112 PF14870 PSII_BNR: Photosynthe 81.3 79 0.0017 33.6 24.1 244 10-298 44-294 (302)
113 PLN00181 protein SPA1-RELATED; 80.0 1.5E+02 0.0032 35.9 24.0 140 88-265 545-691 (793)
114 PF10282 Lactonase: Lactonase, 79.5 93 0.002 33.3 24.4 210 37-273 48-286 (345)
115 KOG0310 Conserved WD40 repeat- 78.8 32 0.00069 38.2 12.7 146 86-266 78-227 (487)
116 PF05096 Glu_cyclase_2: Glutam 78.5 39 0.00085 35.1 12.8 114 130-267 47-160 (264)
117 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.5 1.3E+02 0.0029 34.5 24.5 123 82-221 64-198 (527)
118 PF05096 Glu_cyclase_2: Glutam 77.5 45 0.00097 34.7 12.9 104 189-315 54-157 (264)
119 PTZ00421 coronin; Provisional 77.3 1.4E+02 0.003 34.1 21.5 155 88-271 138-297 (493)
120 PRK02889 tolB translocation pr 75.9 1.3E+02 0.0029 33.2 22.4 183 53-265 220-404 (427)
121 PRK04043 tolB translocation pr 73.9 1.5E+02 0.0033 32.9 25.4 181 103-315 213-400 (419)
122 PLN00033 photosystem II stabil 73.3 1.5E+02 0.0033 32.7 27.6 135 13-171 75-214 (398)
123 KOG0310 Conserved WD40 repeat- 73.0 1.6E+02 0.0035 32.9 18.0 212 37-299 79-299 (487)
124 PF13088 BNR_2: BNR repeat-lik 66.2 1.6E+02 0.0034 30.0 21.1 228 61-295 28-275 (275)
125 PRK01742 tolB translocation pr 65.4 2.2E+02 0.0048 31.5 21.8 162 53-249 228-391 (429)
126 PF12217 End_beta_propel: Cata 65.3 1.8E+02 0.0038 30.3 20.9 213 32-250 79-334 (367)
127 KOG0649 WD40 repeat protein [G 65.2 1.7E+02 0.0037 30.1 14.9 157 63-247 99-263 (325)
128 PRK11028 6-phosphogluconolacto 65.2 1.9E+02 0.004 30.5 26.8 204 37-272 46-268 (330)
129 PF03178 CPSF_A: CPSF A subuni 64.7 1.9E+02 0.0041 30.4 16.0 137 88-248 42-190 (321)
130 PRK10115 protease 2; Provision 64.6 3E+02 0.0066 32.7 25.2 211 37-272 137-354 (686)
131 PF06433 Me-amine-dh_H: Methyl 64.6 2.1E+02 0.0046 30.9 17.1 252 38-322 3-284 (342)
132 PRK10115 protease 2; Provision 63.7 3.1E+02 0.0068 32.6 24.4 217 31-273 175-403 (686)
133 KOG0289 mRNA splicing factor [ 62.8 2.5E+02 0.0055 31.2 17.4 120 78-223 348-471 (506)
134 KOG2321 WD40 repeat protein [G 62.7 55 0.0012 37.3 10.2 74 126-217 132-208 (703)
135 COG4946 Uncharacterized protei 62.2 2.7E+02 0.0059 31.4 17.4 114 139-273 371-486 (668)
136 KOG2048 WD40 repeat protein [G 62.1 3.1E+02 0.0068 32.0 18.0 116 135-273 437-560 (691)
137 COG2706 3-carboxymuconate cycl 60.4 2.5E+02 0.0054 30.3 16.2 159 52-223 166-332 (346)
138 PLN03215 ascorbic acid mannose 60.0 2.2E+02 0.0047 31.3 14.2 141 62-222 189-354 (373)
139 PF13088 BNR_2: BNR repeat-lik 59.8 2E+02 0.0044 29.1 18.7 225 12-245 29-275 (275)
140 PLN02919 haloacid dehalogenase 57.6 4.8E+02 0.011 32.8 26.0 159 87-267 694-891 (1057)
141 PLN03215 ascorbic acid mannose 57.1 2.4E+02 0.0053 30.9 14.0 99 112-225 189-305 (373)
142 KOG2048 WD40 repeat protein [G 56.7 3.8E+02 0.0083 31.3 23.0 119 176-316 423-549 (691)
143 PF14583 Pectate_lyase22: Olig 55.8 3E+02 0.0065 30.3 14.3 237 37-300 46-303 (386)
144 PF02239 Cytochrom_D1: Cytochr 55.2 3.1E+02 0.0068 29.9 18.0 193 52-279 15-217 (369)
145 PF02239 Cytochrom_D1: Cytochr 55.0 2.7E+02 0.0058 30.4 14.2 196 53-270 150-353 (369)
146 KOG0291 WD40-repeat-containing 54.0 4.5E+02 0.0098 31.4 23.3 109 37-170 361-472 (893)
147 PLN00181 protein SPA1-RELATED; 53.4 4.8E+02 0.01 31.5 26.0 145 87-265 587-739 (793)
148 COG4257 Vgb Streptogramin lyas 50.9 3.2E+02 0.007 28.8 16.3 182 55-273 85-271 (353)
149 PF11134 Phage_stabilise: Phag 48.3 4.4E+02 0.0094 29.5 20.6 24 89-118 101-124 (469)
150 PF05142 DUF702: Domain of unk 47.7 22 0.00048 33.6 3.7 35 522-556 118-152 (154)
151 COG1520 FOG: WD40-like repeat 47.0 4E+02 0.0086 28.7 23.9 196 37-263 111-319 (370)
152 PTZ00421 coronin; Provisional 46.7 4.9E+02 0.011 29.6 18.1 155 39-221 139-297 (493)
153 COG0823 TolB Periplasmic compo 43.7 4.2E+02 0.009 29.6 13.6 149 103-273 218-368 (425)
154 PF12217 End_beta_propel: Cata 42.4 4.2E+02 0.0091 27.6 18.5 212 82-300 20-259 (367)
155 KOG2321 WD40 repeat protein [G 42.2 1.9E+02 0.004 33.3 10.2 120 26-166 132-260 (703)
156 PTZ00420 coronin; Provisional 41.9 6.2E+02 0.013 29.5 17.0 153 39-221 139-300 (568)
157 KOG0646 WD40 repeat protein [G 41.2 5.6E+02 0.012 28.7 14.1 29 237-270 285-313 (476)
158 PF09826 Beta_propel: Beta pro 41.2 6.1E+02 0.013 29.2 22.5 105 204-316 246-356 (521)
159 KOG4378 Nuclear protein COP1 [ 40.3 5E+02 0.011 29.5 13.0 90 157-266 188-282 (673)
160 PTZ00420 coronin; Provisional 39.7 6.7E+02 0.015 29.2 21.8 152 89-271 139-300 (568)
161 TIGR02658 TTQ_MADH_Hv methylam 38.6 5.5E+02 0.012 27.9 28.9 117 38-169 13-141 (352)
162 KOG1036 Mitotic spindle checkp 33.7 6.1E+02 0.013 27.0 16.2 131 54-217 36-166 (323)
163 PF15525 DUF4652: Domain of un 33.6 4.9E+02 0.011 25.8 11.2 67 102-172 87-156 (200)
164 KOG0281 Beta-TrCP (transducin 32.6 4.5E+02 0.0098 28.5 10.7 79 206-300 340-419 (499)
165 KOG0316 Conserved WD40 repeat- 31.0 4.2E+02 0.0092 27.3 9.8 105 138-267 70-176 (307)
166 COG4880 Secreted protein conta 30.9 8E+02 0.017 27.5 13.5 173 99-314 402-591 (603)
167 PLN02919 haloacid dehalogenase 30.2 1.2E+03 0.026 29.4 32.3 247 36-315 578-888 (1057)
168 TIGR03074 PQQ_membr_DH membran 29.7 1.1E+03 0.023 28.6 25.6 32 31-68 188-221 (764)
169 KOG0306 WD40-repeat-containing 29.1 1.1E+03 0.023 28.4 19.3 66 83-166 379-444 (888)
170 PF07734 FBA_1: F-box associat 26.8 5.4E+02 0.012 24.2 15.2 85 34-119 2-91 (164)
171 KOG0281 Beta-TrCP (transducin 26.8 5.5E+02 0.012 27.8 10.2 69 231-315 320-388 (499)
172 KOG0296 Angio-associated migra 26.3 8.8E+02 0.019 26.5 17.6 146 37-217 75-223 (399)
173 KOG0289 mRNA splicing factor [ 26.2 9.6E+02 0.021 26.9 14.0 100 53-172 369-470 (506)
174 KOG3881 Uncharacterized conser 24.8 8.1E+02 0.018 27.0 11.2 152 38-215 161-321 (412)
175 PF05687 DUF822: Plant protein 24.1 1.7E+02 0.0038 27.5 5.3 84 538-623 61-144 (150)
176 PF14583 Pectate_lyase22: Olig 24.0 6.6E+02 0.014 27.7 10.6 179 53-250 102-303 (386)
177 TIGR02658 TTQ_MADH_Hv methylam 23.2 9.9E+02 0.021 26.0 14.1 125 191-328 13-149 (352)
178 PRK01029 tolB translocation pr 21.8 1.1E+03 0.024 26.0 21.5 62 206-273 351-412 (428)
179 KOG4649 PQQ (pyrrolo-quinoline 20.9 9.9E+02 0.021 25.1 10.4 110 130-267 13-126 (354)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.9e-41 Score=377.93 Aligned_cols=300 Identities=22% Similarity=0.401 Sum_probs=255.4
Q ss_pred CCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC--CcccceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECC
Q 006334 12 AAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG--GLHFGDVLMLNLDTMVWSTLATTGQGPG-PRDSHSAILWGH 88 (650)
Q Consensus 12 ~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~-pR~~hsa~~~~~ 88 (650)
+.+|.++...+..|.+|.+|+++++++.||||||... ....+++|+||+.+++|..++..+..|. .|.+|+++++++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 5899988877778999999999999999999999753 2345789999999999998877665555 467899999999
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
+||||||.+....++++|+||+.+++|+++......|.+|+.|+++++ +++|||+||... ...++++++||+.+++|
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~--~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSA--TARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCC--CCCcceEEEEECCCCEE
Confidence 999999998877899999999999999998544445889999999887 699999999853 44678999999999999
Q ss_pred eeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEec
Q 006334 169 ASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG 248 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG 248 (650)
+.+...+.+|.+|..|++++++++||++||.++. .++++++||+.+++|+.++..+..|.+|..|++++++++|||+||
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 9987666678899999999999999999997654 468999999999999999877777899999999999999999999
Q ss_pred cCC---------CcccCeEEEEECCCCcEEEeecCC---CCCCCcceeEEE--EE-C-CeEEEEcCCCCCCCCCCcEEEE
Q 006334 249 VGD---------KHYYNDIWILNVSTCSWSQLDTCG---QQPQGRFSHAAV--VT-G-SDIVIYGGCGEDERPLNELLVL 312 (650)
Q Consensus 249 ~~~---------~~~~~dv~~yD~~t~~W~~l~~~~---~~p~~R~~hsav--~~-~-~~lyV~GG~~~~~~~~~d~~~l 312 (650)
... ....+++|+||+.+++|+.+...+ ..|.+|..|+++ .+ + +.|++|||..+.+..++|+|+|
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 753 235679999999999999997643 357788777543 23 3 3499999998878889999999
Q ss_pred ecC
Q 006334 313 QLG 315 (650)
Q Consensus 313 ~l~ 315 (650)
+++
T Consensus 466 ~~~ 468 (470)
T PLN02193 466 GID 468 (470)
T ss_pred ecC
Confidence 876
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.7e-41 Score=360.38 Aligned_cols=305 Identities=20% Similarity=0.372 Sum_probs=246.6
Q ss_pred cCCCeEEeeecCC-CCCCCcceeEEEEECCEEEEEccCCC--CcccceEEEEECCCCcEEEeecCCCCCCC-CcceEEEE
Q 006334 10 KRAAMWLYPKVLG-FNPPERWGHSACYSHGAVYIFGGCCG--GLHFGDVLMLNLDTMVWSTLATTGQGPGP-RDSHSAIL 85 (650)
Q Consensus 10 ~~~~~W~~~~~~g-~~P~~R~ghs~v~~~~~IyvfGG~~~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~p-R~~hsa~~ 85 (650)
+....|..+...+ ..|.+|.+|++++++++||||||... ....+++|+||+.+++|..++.++..|.. +.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 3557799887644 47899999999999999999999853 33458999999999999998877544443 45789999
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC--CCCCCCCcccEEEEEcCCEEEEEccccCCC----CcccceEE
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR--GAPPSPRESHTATLVGDDKMVIFGGSGEGE----ANYLNDLH 159 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~----~~~~~dv~ 159 (650)
++++||||||.+....++++++||+.+++|+.+... ...|.+|..|++++. +++|||+||..... ...+++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEE
Confidence 999999999998777789999999999999987321 123789999998877 69999999985321 12468999
Q ss_pred EEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC--------CCccCeEEEEECCCCcEEEeeecCCCCCcc
Q 006334 160 VLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG--------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVR 231 (650)
Q Consensus 160 ~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~--------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R 231 (650)
+||+.+++|+.++..+..|.+|..|++++++++||++||... ....+++++||+.+++|++++..+.+|.+|
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 999999999998755555689999999999999999998642 123688999999999999998777789999
Q ss_pred cceEEEEECCEEEEEeccC---------CCcccCeEEEEECCCCcEEEeecCC--CCCCCcceeEEEEE--CCeEEEEcC
Q 006334 232 AGHAAINIGTKVYIIGGVG---------DKHYYNDIWILNVSTCSWSQLDTCG--QQPQGRFSHAAVVT--GSDIVIYGG 298 (650)
Q Consensus 232 ~~~s~v~~~~~IyI~GG~~---------~~~~~~dv~~yD~~t~~W~~l~~~~--~~p~~R~~hsav~~--~~~lyV~GG 298 (650)
..|++++++++||||||.. .....+++|+||+++++|+.+...+ .+|..|..++++.+ +++||||||
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 9999999999999999974 2345679999999999999987532 34555554444443 458999999
Q ss_pred CCCCCCCCCcEEEEecC
Q 006334 299 CGEDERPLNELLVLQLG 315 (650)
Q Consensus 299 ~~~~~~~~~d~~~l~l~ 315 (650)
+...+..++|+|.+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 323 KLPTNERTDDLYFYAVN 339 (341)
T ss_pred cCCCCccccceEEEecc
Confidence 98776788999988764
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=322.28 Aligned_cols=285 Identities=32% Similarity=0.614 Sum_probs=253.6
Q ss_pred CeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCccc-----ceEEEEECCCCcEEEeecC----------CCCCCC
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHF-----GDVLMLNLDTMVWSTLATT----------GQGPGP 77 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~-----~dv~~yD~~t~sW~~l~~~----------g~~P~p 77 (650)
..|.. ...|- +.|.+|+++.++.+||-|||++....+ -|+.++|..+.+|+++++. +..|--
T Consensus 2 ~~WTV-HLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyq 78 (392)
T KOG4693|consen 2 ATWTV-HLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQ 78 (392)
T ss_pred ceEEE-EecCC--cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchh
Confidence 35774 33332 479999999999999999999854333 3799999999999998761 123667
Q ss_pred CcceEEEEECCEEEEEcccCC-CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccc
Q 006334 78 RDSHSAILWGHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLN 156 (650)
Q Consensus 78 R~~hsa~~~~~~lyVfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~ 156 (650)
|++|+.+.+++++||.||.+. .+.-|-+|.||++++.|.+.++++..|.+|.+|++++++ +.+|||||+.+....+.+
T Consensus 79 RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-n~MyiFGGye~~a~~FS~ 157 (392)
T KOG4693|consen 79 RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-NQMYIFGGYEEDAQRFSQ 157 (392)
T ss_pred hcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC-cEEEEecChHHHHHhhhc
Confidence 999999999999999999987 456799999999999999999999999999999999994 999999999877778899
Q ss_pred eEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC---------CCccCeEEEEECCCCcEEEeeecCCC
Q 006334 157 DLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG---------DQYHGDIDMLDMNSLTWSRLAIIGSS 227 (650)
Q Consensus 157 dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~---------~~~~n~v~~yd~~t~~W~~i~~~g~~ 227 (650)
|++.+|+.|++|..+..++..|.=|..|+++++++.+|||||..+ ..+.+.+..+|+.+..|...+..+..
T Consensus 158 d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 158 DTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred cceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 999999999999999999999999999999999999999999643 25678899999999999999888888
Q ss_pred CCcccceEEEEECCEEEEEeccCC--CcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCC
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVGD--KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~~--~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~ 301 (650)
|.+|..|++.+++++||+|||+++ +.-++|+|+||+.+..|..+...+..|.+|..+++++.++++|+|||...
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999985 45689999999999999999999999999999999999999999999754
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.8e-36 Score=333.25 Aligned_cols=283 Identities=23% Similarity=0.365 Sum_probs=235.5
Q ss_pred cceeEEEEECCEEEEEccCCCCcccceEEEE--ECCC----CcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC--
Q 006334 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLML--NLDT----MVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY-- 99 (650)
Q Consensus 28 R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~y--D~~t----~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-- 99 (650)
..+...++.+++|+.|+|.... .++.+-.| ++.+ ++|..+...+..|.||.+|++++++++||||||....
T Consensus 111 ~~g~~f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~ 189 (470)
T PLN02193 111 RPGVKFVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ 189 (470)
T ss_pred CCCCEEEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC
Confidence 3455566678999999997643 35555444 6544 7999998877779999999999999999999998532
Q ss_pred cCcCeEEEEECCCCcEEeeecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 100 KKVNDLHILDLESKEWMRPECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 100 ~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
...+++|+||+.+++|+.+...+..|. .|..|+++++ +++||||||... ...++++|+||+.+++|+.+...+..|
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~--~~~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDA--SRQYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCC--CCCCccEEEEECCCCEEEEcCcCCCCC
Confidence 235789999999999998755545554 3567777777 699999999853 346899999999999999987444458
Q ss_pred CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 179 ~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
.+|+.|++++++++|||+||......++++++||+.+++|+.++..+.+|.+|..|++++++++|||+||.+.. .++++
T Consensus 267 ~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv 345 (470)
T PLN02193 267 TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDV 345 (470)
T ss_pred CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCce
Confidence 89999999999999999999887778899999999999999998666677889999999999999999998654 47899
Q ss_pred EEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCC--------CCCCCcEEEEecC
Q 006334 259 WILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGED--------ERPLNELLVLQLG 315 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~--------~~~~~d~~~l~l~ 315 (650)
++||+.+++|+.+...+..|.+|..|++++++++||||||.... ....++++.||+.
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 99999999999998777778999999999999999999998542 1345789999986
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=339.24 Aligned_cols=272 Identities=22% Similarity=0.388 Sum_probs=243.8
Q ss_pred CCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC-CCcC
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN-GYKK 101 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~-~~~~ 101 (650)
.+.+|..... ...+.||++||... ....+.+..||+.++.|..+..+ |.+|..+++++++|+||++||++ +...
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEccccCCCcc
Confidence 3444444433 45689999999986 67889999999999999999988 78999999999999999999999 7888
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R 181 (650)
++++|+||+.+++|+.+ .++..+|..++++++ ++.||++||.+ +...++.+++||+.+++|+.+. +++.+|
T Consensus 348 l~~ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l-~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va---~m~~~r 418 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPV---APMNTKRSDFGVAVL-DGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVA---PMLTRR 418 (571)
T ss_pred cceEEEecCCCCceecc---CCccCccccceeEEE-CCEEEEEeccc--cccccccEEEecCCCCcccccC---CCCcce
Confidence 99999999999999997 789999999999999 69999999996 4678999999999999999877 899999
Q ss_pred CcceeeeecCEEEEEeccCCCC-ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEE
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~ 260 (650)
++|++++++++||++||.++.. .++++++||+.+++|+.++ +++.+|.++++++++++||++||.++......+++
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEE
Confidence 9999999999999999988877 9999999999999999998 89999999999999999999999998777888999
Q ss_pred EECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 261 LNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 261 yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
||+.+++|+.+.. +..+|..++++++++++|++||++ ....++.+..+|..
T Consensus 496 ydp~~~~W~~v~~---m~~~rs~~g~~~~~~~ly~vGG~~-~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 496 YDPETNQWTMVAP---MTSPRSAVGVVVLGGKLYAVGGFD-GNNNLNTVECYDPE 546 (571)
T ss_pred EcCCCCceeEccc---CccccccccEEEECCEEEEEeccc-CccccceeEEcCCC
Confidence 9999999999954 788999999999999999999965 33456666666665
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=336.32 Aligned_cols=262 Identities=21% Similarity=0.394 Sum_probs=237.4
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCC-CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCC-GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~-~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
-+++.+..|.. ....|.+|..++++++++.||+.||++ +...++++|+||+.+++|..++++ ..+|..+++++
T Consensus 305 ~yd~~~~~w~~---~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M---~~~R~~~~v~~ 378 (571)
T KOG4441|consen 305 CYDPKTNEWSS---LAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM---NTKRSDFGVAV 378 (571)
T ss_pred EecCCcCcEee---cCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc---cCccccceeEE
Confidence 46788888994 345779999999999999999999999 688899999999999999999998 66899999999
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
++|.||++||.++...++++++||+.+++|..+ ++++.+|++|+++++ +++||++||.+. ...+++++++||+.+
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~-~g~iYi~GG~~~-~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV---APMLTRRSGHGVAVL-GGKLYIIGGGDG-SSNCLNSVECYDPET 453 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCccccc---CCCCcceeeeEEEEE-CCEEEEEcCcCC-CccccceEEEEcCCC
Confidence 999999999999999999999999999999997 778889999999988 699999999853 344899999999999
Q ss_pred CceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
++|+.++ +|+.+|.++.+++++++||++||.++...+.++++||+.+++|+.+. +++.+|..+.++++++++|+
T Consensus 454 ~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 454 NTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred CceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCccccccccEEEECCEEEE
Confidence 9999888 99999999999999999999999988778888999999999999997 78899999999999999999
Q ss_pred EeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 006334 246 IGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~ 288 (650)
+||+++...++.+..||+.+++|+.... +...|.+.++++
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~~~---~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEVTE---PESGRGGAGVAV 567 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeCCC---ccccccCcceEE
Confidence 9999999999999999999999999864 344454444444
No 7
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.3e-34 Score=308.19 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=215.9
Q ss_pred CCcceeEEEEECCEEEEEccCCCC----------cccceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 006334 26 PERWGHSACYSHGAVYIFGGCCGG----------LHFGDVLMLNLDT--MVWSTLATTGQGPGPRDSHSAILWGHKMIVF 93 (650)
Q Consensus 26 ~~R~ghs~v~~~~~IyvfGG~~~~----------~~~~dv~~yD~~t--~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVf 93 (650)
..+.++.++++++.|||+||.+.. ..++++|+|+... .+|..+..+ |.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l---p~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL---PYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC---CccccceEEEEECCEEEEE
Confidence 567899999999999999998642 3567899996332 369888776 7789888888899999999
Q ss_pred cccCCCcCcCeEEEEECCCCcEE-eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecc
Q 006334 94 GGTNGYKKVNDLHILDLESKEWM-RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 94 GG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
||.++...++++|+||+.+++|. .+....++|.+|..|+++++ +++|||+||... ...++++++||+.+++|+.++
T Consensus 79 GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCC--CccCceEEEEcCCCCCeeECC
Confidence 99988777899999999999983 22223678899999999887 699999999742 345799999999999999877
Q ss_pred ccCCCC-CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecC--CCCCcccceEEE-EECCEEEEEec
Q 006334 173 VKGDIP-VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIG--SSPGVRAGHAAI-NIGTKVYIIGG 248 (650)
Q Consensus 173 ~~~~lP-~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g--~~P~~R~~~s~v-~~~~~IyI~GG 248 (650)
++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++... ..|..+..++++ +.+++|||+||
T Consensus 156 ---~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 156 ---DFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred ---CCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 666 479999999999999999997653 3467899999999999987432 234444455544 44689999999
Q ss_pred cCCCc--------------------------------ccCeEEEEECCCCcEEEeecCCCCC-CCcceeEEEEECCeEEE
Q 006334 249 VGDKH--------------------------------YYNDIWILNVSTCSWSQLDTCGQQP-QGRFSHAAVVTGSDIVI 295 (650)
Q Consensus 249 ~~~~~--------------------------------~~~dv~~yD~~t~~W~~l~~~~~~p-~~R~~hsav~~~~~lyV 295 (650)
.+... ..+++++||+.+++|+.+.. +| .+|.+++++.++++|||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~~iyv 308 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN---SPFFARCGAALLLTGNNIFS 308 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc---ccccccCchheEEECCEEEE
Confidence 86421 23679999999999999974 44 58999999999999999
Q ss_pred EcCCCCCCCCCCc
Q 006334 296 YGGCGEDERPLNE 308 (650)
Q Consensus 296 ~GG~~~~~~~~~d 308 (650)
+||.........+
T Consensus 309 ~GG~~~pg~rt~~ 321 (323)
T TIGR03548 309 INGELKPGVRTPD 321 (323)
T ss_pred EeccccCCcCCcC
Confidence 9998665544433
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.9e-34 Score=309.79 Aligned_cols=273 Identities=18% Similarity=0.287 Sum_probs=217.1
Q ss_pred CCCCcceeEEEEECCEEEEEccCCCCcccceEEEEEC--CCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcccCCCc
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNL--DTMVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGTNGYK 100 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~--~t~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~~~ 100 (650)
.|.+|..+++++++++|||+||... +++|+||+ .+++|..++.+ | .+|..+++++++++|||+||++...
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~---p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADF---PGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCC---CCCCcccceEEEECCEEEEEeCCCCCC
Confidence 5678888899899999999999743 67999996 57889999877 5 4899999999999999999986432
Q ss_pred ------CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC-----------------------
Q 006334 101 ------KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE----------------------- 151 (650)
Q Consensus 101 ------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~----------------------- 151 (650)
.++++|+||+.+++|+.+. ..+|.+|.+++++.+.+++||++||.....
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 4789999999999999973 235667777777644479999999984210
Q ss_pred ---------CcccceEEEEecCCCceeeccccCCCCC-CCCcceeeeecCEEEEEeccCCCC-ccCeEEEEE--CCCCcE
Q 006334 152 ---------ANYLNDLHVLDLKTMRWASPAVKGDIPV-PRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLD--MNSLTW 218 (650)
Q Consensus 152 ---------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~-~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd--~~t~~W 218 (650)
...++++++||+.+++|+.+. ++|. +|..++++.++++|||+||..... ...+++.|+ +++++|
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 012478999999999999876 7885 688999999999999999975433 234566665 567799
Q ss_pred EEeeecCCCCCcc-------cceEEEEECCEEEEEeccCCCc-----------------ccCeEEEEECCCCcEEEeecC
Q 006334 219 SRLAIIGSSPGVR-------AGHAAINIGTKVYIIGGVGDKH-----------------YYNDIWILNVSTCSWSQLDTC 274 (650)
Q Consensus 219 ~~i~~~g~~P~~R-------~~~s~v~~~~~IyI~GG~~~~~-----------------~~~dv~~yD~~t~~W~~l~~~ 274 (650)
+.++ ++|.+| ..|++++++++|||+||.+... ....+.+||+++++|+.+..
T Consensus 232 ~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~- 307 (346)
T TIGR03547 232 NKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK- 307 (346)
T ss_pred eecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC-
Confidence 9988 444433 4666888999999999985210 12468999999999999864
Q ss_pred CCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 275 GQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 275 ~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
+|.+|..+++++++++|||+||....+...++++.+.+
T Consensus 308 --lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 308 --LPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred --CCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEEe
Confidence 78889999988999999999999877777888887654
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=324.73 Aligned_cols=294 Identities=37% Similarity=0.715 Sum_probs=261.6
Q ss_pred cCCCCCCCcceeEEEEECCEEEEEccCCCCcccc--eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 006334 20 VLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFG--DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN 97 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~--dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~ 97 (650)
..+..|.+|++|+++++++.+|||||........ ++|++|..+..|......+..|.+|++|++++++++||+|||.+
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 4678999999999999999999999987554444 59999999999999999999999999999999999999999998
Q ss_pred C-CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCC
Q 006334 98 G-YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGD 176 (650)
Q Consensus 98 ~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~ 176 (650)
. ...+++++.||+.+++|+.+...+.+|.+|.+|++++++ ++||||||.+.. ...++++|+||+++.+|.++...+.
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCc-ccceeeeeeeccccccceecccCCC
Confidence 5 555899999999999999999988999999999999995 999999999543 3389999999999999999999999
Q ss_pred CCCCCCcceeeeecCEEEEEeccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC--c
Q 006334 177 IPVPRDSHSSNVIANRLFVYGGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK--H 253 (650)
Q Consensus 177 lP~~R~~hs~v~~~~~Iyv~GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~--~ 253 (650)
.|.||++|++++++++++++||.+ ...+++++|.||+.+.+|..+...+..|.+|+.|++++.+++++|+||.... .
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 999999999999999999999988 7889999999999999999988889999999999999999999999999875 3
Q ss_pred ccCeEEEEECCCCcEEEeecCC-CCCCCcceeEEEEECC----eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCG-QQPQGRFSHAAVVTGS----DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~-~~p~~R~~hsav~~~~----~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+.++|.||+++..|..+...+ ..+.+|..|+++.... .+.++||........++++.+...
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred cccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccccc
Confidence 6899999999999999999876 6788999998888743 356667755555566666655554
No 10
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-33 Score=302.29 Aligned_cols=253 Identities=25% Similarity=0.394 Sum_probs=205.3
Q ss_pred CCCcEEEeecC-CCCCCCCcceEEEEECCEEEEEcccCCC--cCcCeEEEEECCCCcEEeeecCCCCCCC-CcccEEEEE
Q 006334 61 DTMVWSTLATT-GQGPGPRDSHSAILWGHKMIVFGGTNGY--KKVNDLHILDLESKEWMRPECRGAPPSP-RESHTATLV 136 (650)
Q Consensus 61 ~t~sW~~l~~~-g~~P~pR~~hsa~~~~~~lyVfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~hs~~~~ 136 (650)
....|..+... +..|.||..|++++++++|||+||.... ...+++|+||+.+++|+.+...+..|.. +.+|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 46679999764 3458999999999999999999998542 3468999999999999987543333332 346777777
Q ss_pred cCCEEEEEccccCCCCcccceEEEEecCCCceeecccc--CCCCCCCCcceeeeecCEEEEEeccCCC------CccCeE
Q 006334 137 GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK--GDIPVPRDSHSSNVIANRLFVYGGDCGD------QYHGDI 208 (650)
Q Consensus 137 ~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~--~~lP~~R~~hs~v~~~~~Iyv~GG~~~~------~~~n~v 208 (650)
+++||||||... ...++++++||+.+++|+.+... ...|.+|..|++++++++|||+||.... ..++++
T Consensus 85 -~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 -GTKLYIFGGRDE--KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred -CCEEEEECCCCC--CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 699999999853 34578999999999999987622 1237899999999999999999997643 245789
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC--------cccCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK--------HYYNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~--------~~~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
++||+.+++|+.++..+..|.+|.+|++++++++|||+||.... ...+++++||+.+++|+.++..+..|.+
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 99999999999998665566889999999999999999997521 2367899999999999999877778999
Q ss_pred cceeEEEEECCeEEEEcCCCCC--------CCCCCcEEEEecCC
Q 006334 281 RFSHAAVVTGSDIVIYGGCGED--------ERPLNELLVLQLGA 316 (650)
Q Consensus 281 R~~hsav~~~~~lyV~GG~~~~--------~~~~~d~~~l~l~~ 316 (650)
|..|++++++++||||||.... ....++++.||+..
T Consensus 242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 9999999999999999997421 23457899999873
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-34 Score=322.84 Aligned_cols=244 Identities=16% Similarity=0.268 Sum_probs=209.6
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC-CCcCcCeEEEEECCCCcEEe
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN-GYKKVNDLHILDLESKEWMR 117 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~-~~~~~ndv~~yD~~t~~W~~ 117 (650)
.|++.||.. ......+++||+.+++|..++.+ |.+|..+++++++++|||+||.+ +...++++++||+.+++|..
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEee
Confidence 455665521 12335789999999999999877 77899999999999999999986 34457999999999999998
Q ss_pred eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEe
Q 006334 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYG 197 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~G 197 (650)
+ .++|.+|..++++++ +++||++||.+. ...++++++||+.+++|+.++ ++|.+|..+++++++++||++|
T Consensus 335 ~---~~m~~~R~~~~~~~~-~g~IYviGG~~~--~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 335 L---PPMIKNRCRFSLAVI-DDTIYAIGGQNG--TNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred C---CCCcchhhceeEEEE-CCEEEEECCcCC--CCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEe
Confidence 7 678999999999888 699999999842 345789999999999999877 8999999999999999999999
Q ss_pred ccCCC------------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcc-cCeE
Q 006334 198 GDCGD------------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHY-YNDI 258 (650)
Q Consensus 198 G~~~~------------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~-~~dv 258 (650)
|.++. ..++++++||+.+++|+.++ +++.+|..+++++++++||++||.++... .+.+
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeE
Confidence 97542 13678999999999999988 78899999999999999999999875433 3468
Q ss_pred EEEECCC-CcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCC
Q 006334 259 WILNVST-CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301 (650)
Q Consensus 259 ~~yD~~t-~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~ 301 (650)
++||+++ ++|+.++. +|.+|..+++++++++||++||.+.
T Consensus 483 e~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 483 FRYNTNTYNGWELITT---TESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred EEecCCCCCCeeEccc---cCcccccceeEEECCEEEEEeeecc
Confidence 9999999 89999874 8889999999999999999999754
No 12
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=324.68 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=215.5
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCC-CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCC-GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~-~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
+++.+..|..+. ..|.+|.+|+++++++.||++||.. .....+++++||+.++.|..++++ |.+|..++++++
T Consensus 277 yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m---~~~R~~~~~~~~ 350 (557)
T PHA02713 277 YNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM---IKNRCRFSLAVI 350 (557)
T ss_pred EeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC---cchhhceeEEEE
Confidence 566778898543 4678899999999999999999975 345678999999999999999887 789999999999
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC---------------
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--------------- 151 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--------------- 151 (650)
+++||++||.++...++++++||+.+++|+.+ .++|.+|..++++++ +++||++||.+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~---~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML---PDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEEC---CCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccc
Confidence 99999999998777789999999999999997 678999999998887 69999999985211
Q ss_pred -CcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCC-ccCeEEEEECCC-CcEEEeeecCCCC
Q 006334 152 -ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNS-LTWSRLAIIGSSP 228 (650)
Q Consensus 152 -~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t-~~W~~i~~~g~~P 228 (650)
...++.+++||+.+++|+.+. +++.+|..+++++++++||++||.++.. ..+.+++||+++ ++|+.++ ++|
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~---~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT---TTE 500 (557)
T ss_pred cccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc---ccC
Confidence 113678999999999999877 8999999999999999999999976543 335689999999 8999988 889
Q ss_pred CcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 229 GVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 229 ~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
.+|..+.+++++++||++||+++. ..+.+||+.+++|+.+..
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 999999999999999999998763 479999999999998864
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.2e-33 Score=300.93 Aligned_cols=276 Identities=20% Similarity=0.328 Sum_probs=215.9
Q ss_pred CCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcccCC
Q 006334 22 GFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGTNG 98 (650)
Q Consensus 22 g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~ 98 (650)
...|.+|..+++++++++|||+||... +.+|+||+. ++.|..++.+ | .+|.+++++.++++|||+||++.
T Consensus 23 ~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~---p~~~r~~~~~v~~~~~IYV~GG~~~ 95 (376)
T PRK14131 23 PDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAF---PGGPREQAVAAFIDGKLYVFGGIGK 95 (376)
T ss_pred CCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcC---CCCCcccceEEEECCEEEEEcCCCC
Confidence 346778888889999999999999743 458999986 4789998766 4 47999999999999999999864
Q ss_pred ------CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC---------------------
Q 006334 99 ------YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--------------------- 151 (650)
Q Consensus 99 ------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--------------------- 151 (650)
...++++|+||+.+++|+.+.. ..|.++.+|+++++.+++||++||.....
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 1236899999999999999732 34667778887774589999999974210
Q ss_pred -----------CcccceEEEEecCCCceeeccccCCCCC-CCCcceeeeecCEEEEEeccCCC-CccCeEE--EEECCCC
Q 006334 152 -----------ANYLNDLHVLDLKTMRWASPAVKGDIPV-PRDSHSSNVIANRLFVYGGDCGD-QYHGDID--MLDMNSL 216 (650)
Q Consensus 152 -----------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~-~R~~hs~v~~~~~Iyv~GG~~~~-~~~n~v~--~yd~~t~ 216 (650)
....+++++||+.+++|+.+. ++|. +|..|+++.++++|||+||.... ....+++ .||++++
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL 250 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc
Confidence 012478999999999999876 7775 78889999999999999996432 2334444 4577899
Q ss_pred cEEEeeecCCCCCccc--------ceEEEEECCEEEEEeccCCCc--------------c---cCeEEEEECCCCcEEEe
Q 006334 217 TWSRLAIIGSSPGVRA--------GHAAINIGTKVYIIGGVGDKH--------------Y---YNDIWILNVSTCSWSQL 271 (650)
Q Consensus 217 ~W~~i~~~g~~P~~R~--------~~s~v~~~~~IyI~GG~~~~~--------------~---~~dv~~yD~~t~~W~~l 271 (650)
+|+.++ ++|.+|. .+.+++++++|||+||.+... . ...+++||+++++|+.+
T Consensus 251 ~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 251 KWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred ceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 999988 5555442 334677899999999986321 0 12467999999999988
Q ss_pred ecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 272 DTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 272 ~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. .+|.+|..+++++++++|||+||........+++++++..
T Consensus 328 ~---~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 328 G---ELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred C---cCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 6 4788999999999999999999987666678888888765
No 14
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.1e-33 Score=297.14 Aligned_cols=316 Identities=31% Similarity=0.523 Sum_probs=264.5
Q ss_pred CCcCCCeEEeee-cCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPK-VLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~-~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
..+.--+|..+. .+|..|.+|.||.+++++..|+||||-++ ...+++.+||..+++|..-...|+.|.+-+.|.++..
T Consensus 12 a~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 12 AEKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred hhhcccceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 344457898775 78999999999999999999999999544 4578999999999999988888999999999999999
Q ss_pred CCEEEEEcccCCCc-CcCeEEEEECCCCcEEeeec----CCCCCCCCcccEEEEEcCCEEEEEccccCCC-------Ccc
Q 006334 87 GHKMIVFGGTNGYK-KVNDLHILDLESKEWMRPEC----RGAPPSPRESHTATLVGDDKMVIFGGSGEGE-------ANY 154 (650)
Q Consensus 87 ~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~~l~~----~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~-------~~~ 154 (650)
+.+||+|||+..++ ++||+|.+....-.|++++. .+.+|-||.+|+..+++ ++.|+|||..++. ..+
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-nKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-NKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-cEeEEeccccccccCcccccchh
Confidence 99999999998765 57999888777777887743 45678999999999996 9999999984321 247
Q ss_pred cceEEEEecCCC----ceeeccccCCCCCCCCcceeeee------cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeec
Q 006334 155 LNDLHVLDLKTM----RWASPAVKGDIPVPRDSHSSNVI------ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAII 224 (650)
Q Consensus 155 ~~dv~~yd~~t~----~Wt~i~~~~~lP~~R~~hs~v~~------~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~ 224 (650)
+||+|++++.-+ .|......+.+|.+|..|+++.+ ..+||||||+++ ..+.|+|.+|+++.+|.+....
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~ 248 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLS 248 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeeccccccc
Confidence 999999998744 59988888999999999999988 247999999876 5678999999999999999999
Q ss_pred CCCCCcccceEEEEECCEEEEEeccCC--------------CcccCeEEEEECCCCcEEEeecC----CCCCCCcceeEE
Q 006334 225 GSSPGVRAGHAAINIGTKVYIIGGVGD--------------KHYYNDIWILNVSTCSWSQLDTC----GQQPQGRFSHAA 286 (650)
Q Consensus 225 g~~P~~R~~~s~v~~~~~IyI~GG~~~--------------~~~~~dv~~yD~~t~~W~~l~~~----~~~p~~R~~hsa 286 (650)
|..|.+|+-|+++.+++++|||||+-. -...+.+-++++.+..|+.+-.. ...|.+|.+|++
T Consensus 249 G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA 328 (830)
T KOG4152|consen 249 GVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA 328 (830)
T ss_pred CCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccccee
Confidence 999999999999999999999999731 13567788999999999987532 127899999999
Q ss_pred EEECCeEEEEcCCCCC------CCCCCcEEEEecCCCCCCCccccc
Q 006334 287 VVTGSDIVIYGGCGED------ERPLNELLVLQLGAEHPNYRYNIS 326 (650)
Q Consensus 287 v~~~~~lyV~GG~~~~------~~~~~d~~~l~l~~~~~~~~~~~~ 326 (650)
++++.+|||.-|.+.. ..=+.|+|.+|.....+..+..+-
T Consensus 329 vAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~ 374 (830)
T KOG4152|consen 329 VAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLV 374 (830)
T ss_pred EEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEE
Confidence 9999999999986532 234678999988766665554443
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=274.98 Aligned_cols=240 Identities=30% Similarity=0.561 Sum_probs=213.8
Q ss_pred cCCCeEEeeec----------CCCCCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCC
Q 006334 10 KRAAMWLYPKV----------LGFNPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78 (650)
Q Consensus 10 ~~~~~W~~~~~----------~g~~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR 78 (650)
.-.-+|.+.+. ....|-.|+||+.+.+++++||+||.+. ...-|-+|.||+.++.|.+....+..|.+|
T Consensus 51 a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaR 130 (392)
T KOG4693|consen 51 AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGAR 130 (392)
T ss_pred ccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCcc
Confidence 34568887653 2235778999999999999999999876 556788999999999999999999999999
Q ss_pred cceEEEEECCEEEEEcccCC--CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCC------
Q 006334 79 DSHSAILWGHKMIVFGGTNG--YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG------ 150 (650)
Q Consensus 79 ~~hsa~~~~~~lyVfGG~~~--~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~------ 150 (650)
.+|+++++++.+|||||+.. ...++|++.+|..|.+|+.+.+.+.+|.=|.+|+++++ ++.+|||||+.+.
T Consensus 131 DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs 209 (392)
T KOG4693|consen 131 DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHS 209 (392)
T ss_pred CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccc
Confidence 99999999999999999964 34589999999999999999999999999999999998 5999999999643
Q ss_pred -CCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCC--CccCeEEEEECCCCcEEEeeecCCC
Q 006334 151 -EANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGD--QYHGDIDMLDMNSLTWSRLAIIGSS 227 (650)
Q Consensus 151 -~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~--~~~n~v~~yd~~t~~W~~i~~~g~~ 227 (650)
...+.+.+..+|+.|..|......+-.|..|..|++-+++++||+|||+.+. .-.+++|+||+.+..|..|...|.-
T Consensus 210 ~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 210 IHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 2346788889999999999988788889999999999999999999998764 5679999999999999999999999
Q ss_pred CCcccceEEEEECCEEEEEeccC
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVG 250 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~ 250 (650)
|.+|.-+++++.++++|+|||..
T Consensus 290 P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 290 PSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCcccceeEEEECCEEEEecCCC
Confidence 99999999999999999999964
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4e-32 Score=308.24 Aligned_cols=232 Identities=17% Similarity=0.341 Sum_probs=204.7
Q ss_pred cceeEEEEECCEEEEEccCCCC-cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEE
Q 006334 28 RWGHSACYSHGAVYIFGGCCGG-LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 28 R~ghs~v~~~~~IyvfGG~~~~-~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~ 106 (650)
+..|+++++++.||++||.... ...+++++||+.+++|..++.+ |.+|.+|++++++++||++||.++....++++
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL---IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC---CcccccceEEEECCEEEEEeCCCCCEecceEE
Confidence 4557889999999999998753 3567999999999999988776 77899999999999999999998777789999
Q ss_pred EEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 107 ILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 107 ~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
+||+.+++|+.+ .++|.+|..|+++.+ +++||++||... ....++++++||+.+++|+.+. ++|.+|..|++
T Consensus 362 ~yd~~~~~W~~~---~~lp~~r~~~~~~~~-~~~iYv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~ 433 (534)
T PHA03098 362 SWKPGESKWREE---PPLIFPRYNPCVVNV-NNLIYVIGGISK-NDELLKTVECFSLNTNKWSKGS---PLPISHYGGCA 433 (534)
T ss_pred EEcCCCCceeeC---CCcCcCCccceEEEE-CCEEEEECCcCC-CCcccceEEEEeCCCCeeeecC---CCCccccCceE
Confidence 999999999986 578899999999877 699999999743 2345789999999999999877 88999999999
Q ss_pred eeecCEEEEEeccCCCC---ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 187 NVIANRLFVYGGDCGDQ---YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~---~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
+.++++||++||..... ..+.+++||+.+++|+.++ +++.+|..++++.++++|||+||.......+++++||+
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 99999999999975432 3577999999999999987 67788999999999999999999987777889999999
Q ss_pred CCCcEEEeec
Q 006334 264 STCSWSQLDT 273 (650)
Q Consensus 264 ~t~~W~~l~~ 273 (650)
++++|+.+..
T Consensus 511 ~~~~W~~~~~ 520 (534)
T PHA03098 511 KTNTWTLFCK 520 (534)
T ss_pred CCCEEEecCC
Confidence 9999999864
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=298.58 Aligned_cols=244 Identities=40% Similarity=0.743 Sum_probs=222.8
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEcccCCCcCcC--eEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccc
Q 006334 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVN--DLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGS 147 (650)
Q Consensus 70 ~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~n--dv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~ 147 (650)
..+..|.+|+.|+++.+++++|||||........ |+|+||..+..|....+++..|.+|++|.++++ +++||+|||.
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~ 131 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGT 131 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEE-CCeEEEEccc
Confidence 4556689999999999999999999997665544 599999999999999999999999999999999 5999999999
Q ss_pred cCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCC-ccCeEEEEECCCCcEEEeeecCC
Q 006334 148 GEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWSRLAIIGS 226 (650)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~~i~~~g~ 226 (650)
.. ....++++++||+.+.+|..+...+..|.+|.+|+++.++++||||||..... ..|++|+||+++.+|.++.+.+.
T Consensus 132 ~~-~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 132 DK-KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred cC-CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence 64 34558999999999999999998889999999999999999999999987766 89999999999999999999999
Q ss_pred CCCcccceEEEEECCEEEEEeccC-CCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCC-
Q 006334 227 SPGVRAGHAAINIGTKVYIIGGVG-DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER- 304 (650)
Q Consensus 227 ~P~~R~~~s~v~~~~~IyI~GG~~-~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~- 304 (650)
.|.+|++|++++++++++|+||.+ ...+++|+|+||+.+..|..+...+..|.+|++|++++.++.++|+||......
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 999999999999999999999998 788999999999999999998888899999999999999999999999876533
Q ss_pred CCCcEEEEecC
Q 006334 305 PLNELLVLQLG 315 (650)
Q Consensus 305 ~~~d~~~l~l~ 315 (650)
.+.++|.+++.
T Consensus 291 ~l~~~~~l~~~ 301 (482)
T KOG0379|consen 291 PLGDLYGLDLE 301 (482)
T ss_pred ccccccccccc
Confidence 68888888886
No 18
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=280.11 Aligned_cols=251 Identities=27% Similarity=0.525 Sum_probs=216.2
Q ss_pred cCCCCCCCcceeEEEEE--CCEEEEEccCC--C--CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEE
Q 006334 20 VLGFNPPERWGHSACYS--HGAVYIFGGCC--G--GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG-HKMIV 92 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~--~~~IyvfGG~~--~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~-~~lyV 92 (650)
..-.+|.||...++++. .+.|++|||.- + ...+||+|.||..+++|+.+... +.|.||.+|.++++. |.+||
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEE
Confidence 44457899999999875 47999999953 2 34579999999999999998655 458999999998885 89999
Q ss_pred EcccCCCc------CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC--CcccceEEEEecC
Q 006334 93 FGGTNGYK------KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--ANYLNDLHVLDLK 164 (650)
Q Consensus 93 fGG~~~~~------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--~~~~~dv~~yd~~ 164 (650)
|||--.+. .+.|+|.||+.+++|++++..+ -|.+|.+|-|+++ +.+|+||||..+.+ -.++||+|+||++
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLD 215 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEecc
Confidence 99974321 2799999999999999997764 7899999999998 69999999996544 3479999999999
Q ss_pred CCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCC---------CCccCeEEEEECCC-----CcEEEeeecCCCCC
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCG---------DQYHGDIDMLDMNS-----LTWSRLAIIGSSPG 229 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~---------~~~~n~v~~yd~~t-----~~W~~i~~~g~~P~ 229 (650)
+-+|++++..+..|.+|.+|++.+. .+.|||+|||+. ...++++|.+++++ ..|+.+...+..|.
T Consensus 216 tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs 295 (521)
T KOG1230|consen 216 TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS 295 (521)
T ss_pred ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC
Confidence 9999999988888999999999988 899999999863 25788999999998 88999999999999
Q ss_pred cccceEEEEECC-EEEEEeccCC---------CcccCeEEEEECCCCcEEEeec
Q 006334 230 VRAGHAAINIGT-KVYIIGGVGD---------KHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 230 ~R~~~s~v~~~~-~IyI~GG~~~---------~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+|.++++++..+ +-|.|||..+ +.+++|+|.||+..++|.....
T Consensus 296 pRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 296 PRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 999999998875 9999999864 3578999999999999988643
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.98 E-value=1.1e-30 Score=296.33 Aligned_cols=256 Identities=20% Similarity=0.309 Sum_probs=213.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCc-CcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYK-KVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~ 116 (650)
..+++.||.. .....+..|+...++|..+... | .+..|++++++++|||+||.+... ..++++.||+.+++|.
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee
Confidence 4456656644 2334566788888889887543 3 245678899999999999997654 4679999999999998
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVY 196 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~ 196 (650)
.+ ..+|.+|..|+++++ +++||++||.+ ....++++++||+.+++|+.+. ++|.+|..|+++.++++||++
T Consensus 325 ~~---~~~~~~R~~~~~~~~-~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~ 395 (534)
T PHA03098 325 KV---PELIYPRKNPGVTVF-NNRIYVIGGIY--NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVI 395 (534)
T ss_pred EC---CCCCcccccceEEEE-CCEEEEEeCCC--CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEE
Confidence 87 577889999999888 69999999985 3456889999999999999877 899999999999999999999
Q ss_pred eccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCc---ccCeEEEEECCCCcEEEee
Q 006334 197 GGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKH---YYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 197 GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~---~~~dv~~yD~~t~~W~~l~ 272 (650)
||.. ....++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++++++||+.+++|+.++
T Consensus 396 GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 396 GGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 9964 3345789999999999999987 7888999999999999999999986432 3677999999999999986
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. ++.+|.+++++..+++|||+||.... ...++++.||..
T Consensus 473 ~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~ 511 (534)
T PHA03098 473 S---LNFPRINASLCIFNNKIYVVGGDKYE-YYINEIEVYDDK 511 (534)
T ss_pred C---CCcccccceEEEECCEEEEEcCCcCC-cccceeEEEeCC
Confidence 4 67789999999999999999998643 246788888876
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=284.06 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=188.6
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
.+..++.||++||.++....+++++||+.+++|..++.+ |.+|..+++++++++||++||.++ .+.+++||+.+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~ 340 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGD 340 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC---CCceEEEECCC
Confidence 345899999999987666778999999999999999887 778999999999999999999854 26799999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR 192 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~ 192 (650)
++|..+ .++|.+|..++++++ +++||++||.+.. .+.+++||+.+++|+.++ +++.+|..+++++++++
T Consensus 341 n~W~~~---~~l~~~r~~~~~~~~-~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 341 AAWVNM---PSLLKPRCNPAVASI-NNVIYVIGGHSET----DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CeEEEC---CCCCCCCcccEEEEE-CCEEEEecCcCCC----CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 999987 678899999998888 6999999998421 367899999999999877 89999999999999999
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
||++||. +++||+++++|+.++ +++.+|..+++++++++||++||.+.....+.+++||+++++|+...
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 9999983 689999999999988 78889999999999999999999876666788999999999998753
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=4e-30 Score=265.65 Aligned_cols=241 Identities=27% Similarity=0.504 Sum_probs=206.3
Q ss_pred CCCCCCcceEEEEE--CCEEEEEccc--CCCc--CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEcc
Q 006334 73 QGPGPRDSHSAILW--GHKMIVFGGT--NGYK--KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGG 146 (650)
Q Consensus 73 ~~P~pR~~hsa~~~--~~~lyVfGG~--~~~~--~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG 146 (650)
.+|.||.+.++++. .+.|++|||- ++.. .+||+|.||.++++|+++.. ...|.||..|.++++..|.||||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEecc
Confidence 35899999999886 3689999995 4433 38999999999999999854 4678899999999998799999999
Q ss_pred ccCCCC----cccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCC----CccCeEEEEECCCCcE
Q 006334 147 SGEGEA----NYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGD----QYHGDIDMLDMNSLTW 218 (650)
Q Consensus 147 ~~~~~~----~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~----~~~n~v~~yd~~t~~W 218 (650)
--.+.+ -...|+|.||+.+++|+.+...+ .|.+|.+|-++++.++|++|||.... .++|+||+||+++.+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 743322 34789999999999999998554 78999999999999999999995432 5799999999999999
Q ss_pred EEeeecCCCCCcccceEEEEE-CCEEEEEeccCC---------CcccCeEEEEECCC-----CcEEEeecCCCCCCCcce
Q 006334 219 SRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGD---------KHYYNDIWILNVST-----CSWSQLDTCGQQPQGRFS 283 (650)
Q Consensus 219 ~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~---------~~~~~dv~~yD~~t-----~~W~~l~~~~~~p~~R~~ 283 (650)
+++.+.+..|.+|++|++.+. .+.|||+||++. +...+|+|.+++++ -.|..+...+..|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999988788999999999998 899999999962 45788999999998 679999998889999999
Q ss_pred eEEEEEC-CeEEEEcCCCCC--------CCCCCcEEEEecC
Q 006334 284 HAAVVTG-SDIVIYGGCGED--------ERPLNELLVLQLG 315 (650)
Q Consensus 284 hsav~~~-~~lyV~GG~~~~--------~~~~~d~~~l~l~ 315 (650)
+++++.. ++-+.|||..+- +...||+|.|++.
T Consensus 300 fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 300 FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT 340 (521)
T ss_pred eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence 9999985 589999998762 1456889988887
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=5.2e-29 Score=265.24 Aligned_cols=223 Identities=22% Similarity=0.330 Sum_probs=178.6
Q ss_pred CeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcE----EEeecCCCCCCCCcceEEEEECC
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVW----STLATTGQGPGPRDSHSAILWGH 88 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW----~~l~~~g~~P~pR~~hsa~~~~~ 88 (650)
.+|... +..|.+|..++++++++.||++||.+....++++|+||+.+++| ..++. .|.+|..|+++++++
T Consensus 51 ~~W~~~---~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~---lp~~~~~~~~~~~~~ 124 (323)
T TIGR03548 51 LKWVKD---GQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN---LPFTFENGSACYKDG 124 (323)
T ss_pred eeEEEc---ccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC---CCcCccCceEEEECC
Confidence 367743 35678898888889999999999998777789999999999998 44444 488999999999999
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC-CCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP-SPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+|||+||.......+++++||+.+++|+.+ ..+| .+|..|+++++ +++|||+||.+. ....++++||+.+++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~r~~~~~~~~-~~~iYv~GG~~~---~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFEL---PDFPGEPRVQPVCVKL-QNELYVFGGGSN---IAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeEC---CCCCCCCCCcceEEEE-CCEEEEEcCCCC---ccccceEEEecCCCe
Confidence 999999986666689999999999999997 3445 47888877766 699999999842 234678999999999
Q ss_pred eeeccccC--CCCCCCCcceee-eecCEEEEEeccCCCC--------------------------------ccCeEEEEE
Q 006334 168 WASPAVKG--DIPVPRDSHSSN-VIANRLFVYGGDCGDQ--------------------------------YHGDIDMLD 212 (650)
Q Consensus 168 Wt~i~~~~--~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~--------------------------------~~n~v~~yd 212 (650)
|+.+.... ..|..+..++.+ ..+++||++||.+... +.+++++||
T Consensus 198 W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 277 (323)
T TIGR03548 198 WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYN 277 (323)
T ss_pred eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEE
Confidence 99877322 233334444444 4478999999976421 246899999
Q ss_pred CCCCcEEEeeecCCCC-CcccceEEEEECCEEEEEeccCC
Q 006334 213 MNSLTWSRLAIIGSSP-GVRAGHAAINIGTKVYIIGGVGD 251 (650)
Q Consensus 213 ~~t~~W~~i~~~g~~P-~~R~~~s~v~~~~~IyI~GG~~~ 251 (650)
+.+++|+.++ ++| .+|..++++.++++||++||...
T Consensus 278 ~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 278 VRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CCCCeeeEcc---cccccccCchheEEECCEEEEEecccc
Confidence 9999999988 455 58999999999999999999754
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.1e-28 Score=268.10 Aligned_cols=244 Identities=18% Similarity=0.278 Sum_probs=189.2
Q ss_pred CCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC------CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 12 AAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG------GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 12 ~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~------~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
+.+|.... ..+..+|.+|+++.+++.|||+||... ...++++|+||+.+++|+.++.. .|.++.+|++++
T Consensus 61 ~~~W~~l~--~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~--~p~~~~~~~~~~ 136 (376)
T PRK14131 61 SKGWTKIA--AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR--SPVGLAGHVAVS 136 (376)
T ss_pred CCCeEECC--cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC--CCCcccceEEEE
Confidence 56788543 323358999999999999999999864 13468999999999999998742 366778888776
Q ss_pred -ECCEEEEEcccCCC----------------------------------cCcCeEEEEECCCCcEEeeecCCCCCC-CCc
Q 006334 86 -WGHKMIVFGGTNGY----------------------------------KKVNDLHILDLESKEWMRPECRGAPPS-PRE 129 (650)
Q Consensus 86 -~~~~lyVfGG~~~~----------------------------------~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~ 129 (650)
.+++|||+||.+.. ...+++++||+.+++|+.+ ..+|. +|.
T Consensus 137 ~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~---~~~p~~~~~ 213 (376)
T PRK14131 137 LHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA---GESPFLGTA 213 (376)
T ss_pred eeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC---CcCCCCCCC
Confidence 79999999998532 1247899999999999986 45664 677
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEE--EEecCCCceeeccccCCCCCCCCc--------ceeeeecCEEEEEecc
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLH--VLDLKTMRWASPAVKGDIPVPRDS--------HSSNVIANRLFVYGGD 199 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~--~yd~~t~~Wt~i~~~~~lP~~R~~--------hs~v~~~~~Iyv~GG~ 199 (650)
.++++.+ +++|||+||.... .....+++ .||+++++|+.+. .+|.+|.. +.+++++++|||+||.
T Consensus 214 ~~a~v~~-~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 214 GSAVVIK-GNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred cceEEEE-CCEEEEEeeeECC-CcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeecc
Confidence 7777766 6999999997432 22234555 4567889999877 77766542 3356789999999996
Q ss_pred CCCC-----------------ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEEEE
Q 006334 200 CGDQ-----------------YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIWIL 261 (650)
Q Consensus 200 ~~~~-----------------~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~~y 261 (650)
+... ....+++||+++++|+.+. .+|.+|..+++++++++|||+||... ....+++++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~ 365 (376)
T PRK14131 289 NFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLL 365 (376)
T ss_pred CCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEE
Confidence 5211 1135789999999999887 78899999999999999999999864 4678899999
Q ss_pred ECCCCcEEE
Q 006334 262 NVSTCSWSQ 270 (650)
Q Consensus 262 D~~t~~W~~ 270 (650)
+++.+.|..
T Consensus 366 ~~~~~~~~~ 374 (376)
T PRK14131 366 SWDGKKLTV 374 (376)
T ss_pred EEcCCEEEE
Confidence 999888765
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.8e-28 Score=263.37 Aligned_cols=236 Identities=19% Similarity=0.289 Sum_probs=184.0
Q ss_pred CCCeEEeeecCCCCC-CCcceeEEEEECCEEEEEccCCCC------cccceEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 006334 11 RAAMWLYPKVLGFNP-PERWGHSACYSHGAVYIFGGCCGG------LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P-~~R~ghs~v~~~~~IyvfGG~~~~------~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa 83 (650)
...+|.++. ..| .+|.+|++++++++|||+||.... ..++++|+||+.+++|+.++. ..|.+|.+|++
T Consensus 39 ~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~ 113 (346)
T TIGR03547 39 PSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASG 113 (346)
T ss_pred CCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeE
Confidence 456788543 344 579999999999999999998532 247899999999999999873 23667888877
Q ss_pred E-EECCEEEEEcccCCCc----------------------------------CcCeEEEEECCCCcEEeeecCCCCCC-C
Q 006334 84 I-LWGHKMIVFGGTNGYK----------------------------------KVNDLHILDLESKEWMRPECRGAPPS-P 127 (650)
Q Consensus 84 ~-~~~~~lyVfGG~~~~~----------------------------------~~ndv~~yD~~t~~W~~l~~~~~~P~-~ 127 (650)
+ +++++||++||.+... .++++++||+.+++|+.+ ..+|. +
T Consensus 114 ~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~---~~~p~~~ 190 (346)
T TIGR03547 114 FSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLG 190 (346)
T ss_pred EEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC---ccCCCCc
Confidence 6 7899999999986421 147899999999999997 56665 6
Q ss_pred CcccEEEEEcCCEEEEEccccCCCCcccceEEEEec--CCCceeeccccCCCCCCC-------CcceeeeecCEEEEEec
Q 006334 128 RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL--KTMRWASPAVKGDIPVPR-------DSHSSNVIANRLFVYGG 198 (650)
Q Consensus 128 R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~--~t~~Wt~i~~~~~lP~~R-------~~hs~v~~~~~Iyv~GG 198 (650)
|..++++++ +++|||+||.... .....+++.||+ ++++|+.+. ++|.+| ..|++++++++||++||
T Consensus 191 r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 191 TAGSAIVHK-GNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CCCceEEEE-CCEEEEEeeeeCC-CccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeec
Confidence 777777776 6999999998432 222355666655 677999877 676654 35567788999999999
Q ss_pred cCCC-----------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEEE
Q 006334 199 DCGD-----------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIWI 260 (650)
Q Consensus 199 ~~~~-----------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~~ 260 (650)
.+.. .....+++||+++++|+.+. ++|.+|..+++++++++|||+||.+. ...+++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 342 (346)
T TIGR03547 266 ANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342 (346)
T ss_pred CCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEE
Confidence 7521 11246899999999999987 78888999998899999999999875 466788887
Q ss_pred EE
Q 006334 261 LN 262 (650)
Q Consensus 261 yD 262 (650)
|.
T Consensus 343 ~~ 344 (346)
T TIGR03547 343 LS 344 (346)
T ss_pred EE
Confidence 64
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=267.14 Aligned_cols=204 Identities=17% Similarity=0.257 Sum_probs=177.9
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEe
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLD 162 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd 162 (650)
++..++.||++||.++....+++++||+.+++|..+ .+++.+|..++++++ +++||++||.+. .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~---~~m~~~r~~~~~v~~-~~~iYviGG~~~-----~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI---PPMNSPRLYASGVPA-NNKLYVVGGLPN-----PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC---CCCCchhhcceEEEE-CCEEEEECCcCC-----CCceEEEE
Confidence 345899999999997767788999999999999997 678899999998887 699999999842 25689999
Q ss_pred cCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCE
Q 006334 163 LKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242 (650)
Q Consensus 163 ~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~ 242 (650)
+.+++|+.++ ++|.+|..|++++++++||++||.+.. .+.+++||+.+++|+.++ +++.+|..+++++++++
T Consensus 338 p~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 338 HGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 9999999877 899999999999999999999997543 368999999999999987 78899999999999999
Q ss_pred EEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
||++||. +.+||+++++|+.++. ++.+|.++++++++++|||+||.... ...+.+.+||..
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~ 470 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNR 470 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECC
Confidence 9999983 5789999999999864 78899999999999999999998632 234667777775
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.9e-28 Score=257.65 Aligned_cols=257 Identities=33% Similarity=0.608 Sum_probs=220.4
Q ss_pred CCCCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeec----CCCCCCCCc
Q 006334 5 GGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLAT----TGQGPGPRD 79 (650)
Q Consensus 5 ~~~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~----~g~~P~pR~ 79 (650)
.+.++..++.|..+.+-|..|++...|..+..+.+||+|||..+ +.++||+|.+-...-.|+++.+ .|.+|.||-
T Consensus 59 LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRl 138 (830)
T KOG4152|consen 59 LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRL 138 (830)
T ss_pred hhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCcc
Confidence 46688999999999999999999999999999999999999764 6788999988888888888754 467799999
Q ss_pred ceEEEEECCEEEEEcccCCC---------cCcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEc-----CCEE
Q 006334 80 SHSAILWGHKMIVFGGTNGY---------KKVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVG-----DDKM 141 (650)
Q Consensus 80 ~hsa~~~~~~lyVfGG~~~~---------~~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~-----~~~L 141 (650)
+|+..+++++.|+|||..++ .++||+|++++.-. .|......+..|.+|..|+++++. ..++
T Consensus 139 GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skm 218 (830)
T KOG4152|consen 139 GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKM 218 (830)
T ss_pred CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceE
Confidence 99999999999999998432 24799999999854 499988889999999999999883 2579
Q ss_pred EEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC--------------CCccCe
Q 006334 142 VIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG--------------DQYHGD 207 (650)
Q Consensus 142 yv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~--------------~~~~n~ 207 (650)
|||||+. ...+.|+|.+|+++..|.+++..+..|.||.-|+++.++|+||||||+.. -+..++
T Consensus 219 vvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTss 295 (830)
T KOG4152|consen 219 VVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSS 295 (830)
T ss_pred EEEcccc---cccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccc
Confidence 9999994 56799999999999999999999999999999999999999999999521 135778
Q ss_pred EEEEECCCCcEEEeeec----CCCCCcccceEEEEECCEEEEEeccCC-------CcccCeEEEEECC
Q 006334 208 IDMLDMNSLTWSRLAII----GSSPGVRAGHAAINIGTKVYIIGGVGD-------KHYYNDIWILNVS 264 (650)
Q Consensus 208 v~~yd~~t~~W~~i~~~----g~~P~~R~~~s~v~~~~~IyI~GG~~~-------~~~~~dv~~yD~~ 264 (650)
+-++|+++..|+.+-.. ...|.+|.+|++++++.++||..|.++ ...-.|+|.+|.+
T Consensus 296 l~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 296 LACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 89999999999988632 237899999999999999999999864 2334567777654
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=5.5e-16 Score=159.69 Aligned_cols=276 Identities=20% Similarity=0.350 Sum_probs=202.0
Q ss_pred CCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCc-
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDT--MVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYK- 100 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t--~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~- 100 (650)
.|.+--.-+...+++.+||.=|..+ ...|.+|+.. ..|++++...- .+|....+++++++||||||.....
T Consensus 33 lPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG--~~rnqa~~a~~~~kLyvFgG~Gk~~~ 106 (381)
T COG3055 33 LPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPG--GARNQAVAAVIGGKLYVFGGYGKSVS 106 (381)
T ss_pred CCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCC--cccccchheeeCCeEEEeeccccCCC
Confidence 4444444467788899999777433 3577888764 57999987622 4799999999999999999985432
Q ss_pred ----CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCC--------------------------
Q 006334 101 ----KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG-------------------------- 150 (650)
Q Consensus 101 ----~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~-------------------------- 150 (650)
.+||+|+||+.+++|.++++. .|....+++++...+.++|++||+...
T Consensus 107 ~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~y 184 (381)
T COG3055 107 SSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHY 184 (381)
T ss_pred CCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHH
Confidence 379999999999999998544 455577777777765699999998421
Q ss_pred ------CCcccceEEEEecCCCceeeccccCCCC-CCCCcceeeeecCEEEEEeccCCC-CccCeEEEEECC--CCcEEE
Q 006334 151 ------EANYLNDLHVLDLKTMRWASPAVKGDIP-VPRDSHSSNVIANRLFVYGGDCGD-QYHGDIDMLDMN--SLTWSR 220 (650)
Q Consensus 151 ------~~~~~~dv~~yd~~t~~Wt~i~~~~~lP-~~R~~hs~v~~~~~Iyv~GG~~~~-~~~n~v~~yd~~--t~~W~~ 220 (650)
+-.+..+++.||+.++.|..+- ..| .++++.+.+.-+|++.++-|.-.. -....+++++.. ..+|..
T Consensus 185 f~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 185 FDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred hCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 0124568899999999999654 555 466665555557889999886543 234456666654 667999
Q ss_pred eeecCCC----CCcccceEEEEECCEEEEEeccCC-------------------CcccCeEEEEECCCCcEEEeecCCCC
Q 006334 221 LAIIGSS----PGVRAGHAAINIGTKVYIIGGVGD-------------------KHYYNDIWILNVSTCSWSQLDTCGQQ 277 (650)
Q Consensus 221 i~~~g~~----P~~R~~~s~v~~~~~IyI~GG~~~-------------------~~~~~dv~~yD~~t~~W~~l~~~~~~ 277 (650)
+.....+ .....++-.-..++.+++.||..- ..+.++||.|| .+.|+.+. ++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~G---eL 336 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVG---EL 336 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeec---cc
Confidence 8743221 123344444456789999999741 13567899998 89999985 57
Q ss_pred CCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 278 PQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 278 p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
|.++.+-.++..+++||++||....+.....++.+.+.
T Consensus 337 p~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 337 PQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred CCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 88888888888899999999999988888888777664
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.70 E-value=2e-18 Score=182.55 Aligned_cols=305 Identities=18% Similarity=0.298 Sum_probs=213.9
Q ss_pred cCCCeEEeeecCC-------CCCCCcceeEEEEECC--EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcc
Q 006334 10 KRAAMWLYPKVLG-------FNPPERWGHSACYSHG--AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS 80 (650)
Q Consensus 10 ~~~~~W~~~~~~g-------~~P~~R~ghs~v~~~~--~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~ 80 (650)
+-+.+|.+.+.+. .-|..|.||.+|...+ .||++||+++-..+.|+|.|+...+.|..+...+..|..|.+
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 3456888876655 6799999999998765 999999999999999999999999999999877767999999
Q ss_pred eEEEEECC--EEEEEcccCCCc------CcCeEEEEECCCCcEEeeecCC---CCCCCCcccEEEEEcC-CEEEEEcccc
Q 006334 81 HSAILWGH--KMIVFGGTNGYK------KVNDLHILDLESKEWMRPECRG---APPSPRESHTATLVGD-DKMVIFGGSG 148 (650)
Q Consensus 81 hsa~~~~~--~lyVfGG~~~~~------~~ndv~~yD~~t~~W~~l~~~~---~~P~~R~~hs~~~~~~-~~Lyv~GG~~ 148 (650)
|-+++... +||+.|-+-+.. .-.|+|+||..++.|..+.... .-|..-+.|.+++..+ +-|||+||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998765 999999874432 2479999999999999874322 3478889999999863 2399999985
Q ss_pred CCCC-cccceEEEEecCCCceeeccccC-------CCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcE
Q 006334 149 EGEA-NYLNDLHVLDLKTMRWASPAVKG-------DIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 149 ~~~~-~~~~dv~~yd~~t~~Wt~i~~~~-------~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
.... ..+.-+|.||.....|..+.... .....|-+|++-++ ++++|++||...+.-++-.+.||+....-
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 3333 56788999999999998654221 11234666766655 57899999988777777777887665443
Q ss_pred EEeeec----CCCCCcccceEEEEE---CCEEEEEeccCC------CcccCeEEEEECCCCcEEEeecC-----------
Q 006334 219 SRLAII----GSSPGVRAGHAAINI---GTKVYIIGGVGD------KHYYNDIWILNVSTCSWSQLDTC----------- 274 (650)
Q Consensus 219 ~~i~~~----g~~P~~R~~~s~v~~---~~~IyI~GG~~~------~~~~~dv~~yD~~t~~W~~l~~~----------- 274 (650)
..+... ..+-..+....-+.. ..+|++.-|... ....+.+|+|++.++.|..+...
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvf 555 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVF 555 (723)
T ss_pred hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCcee
Confidence 333210 011111211111222 236777767642 23677899999999999776321
Q ss_pred ----------CCCCCCcceeEEEEE--CCeEEEEcCCCCCC----CCCCcEEEEec
Q 006334 275 ----------GQQPQGRFSHAAVVT--GSDIVIYGGCGEDE----RPLNELLVLQL 314 (650)
Q Consensus 275 ----------~~~p~~R~~hsav~~--~~~lyV~GG~~~~~----~~~~d~~~l~l 314 (650)
-..+.+|++|+.++. ..-+|.+||..... ..++|.|.+++
T Consensus 556 svpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I 611 (723)
T KOG2437|consen 556 SVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKI 611 (723)
T ss_pred eccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhh
Confidence 014667888877664 34579999965432 12345555444
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=155.98 Aligned_cols=241 Identities=21% Similarity=0.360 Sum_probs=179.8
Q ss_pred CcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC-----CcccceEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 006334 9 AKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG-----GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83 (650)
Q Consensus 9 ~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~-----~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa 83 (650)
+...-.|. +...++-.+|.+..+++++++||+|||... .+.++|+|+||+.+++|+++... .|....++++
T Consensus 66 ~~~~k~W~--~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~ 141 (381)
T COG3055 66 KKPGKGWT--KIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGAST 141 (381)
T ss_pred hcCCCCce--EcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--ccccccccee
Confidence 33446798 577788899999999999999999999863 34579999999999999999765 3667888999
Q ss_pred EEECC-EEEEEcccCC----------------------------------CcCcCeEEEEECCCCcEEeeecCCCCCCCC
Q 006334 84 ILWGH-KMIVFGGTNG----------------------------------YKKVNDLHILDLESKEWMRPECRGAPPSPR 128 (650)
Q Consensus 84 ~~~~~-~lyVfGG~~~----------------------------------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 128 (650)
+.+++ +||++||.+. .....+++.||+.++.|+.+ +..|..-
T Consensus 142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~---G~~pf~~ 218 (381)
T COG3055 142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNL---GENPFYG 218 (381)
T ss_pred EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhc---CcCcccC
Confidence 99877 9999999851 01246799999999999987 5555444
Q ss_pred cccEEEEEcCCEEEEEccccCCCCcccceEEEEecC--CCceeeccccCCCCCCCC-------cceeeeecCEEEEEecc
Q 006334 129 ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK--TMRWASPAVKGDIPVPRD-------SHSSNVIANRLFVYGGD 199 (650)
Q Consensus 129 ~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~--t~~Wt~i~~~~~lP~~R~-------~hs~v~~~~~Iyv~GG~ 199 (650)
.+.++++..++++.++-|.-. .......++++++. ..+|..+. ++|.+.. ++..-..++.+.+.||.
T Consensus 219 ~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 219 NAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred ccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 444666666788999999743 34445567777764 56898876 4443332 22333446788888883
Q ss_pred CC-------------------CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEE
Q 006334 200 CG-------------------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIW 259 (650)
Q Consensus 200 ~~-------------------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~ 259 (650)
.- ..+.++||.|| ++.|..+- .+|.++....++..++.||++||... .....+++
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~ 369 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVY 369 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCCCeeeeeEE
Confidence 21 13567888888 99999987 78889999999999999999999864 45666666
Q ss_pred EEECCC
Q 006334 260 ILNVST 265 (650)
Q Consensus 260 ~yD~~t 265 (650)
.+-...
T Consensus 370 ~l~~~g 375 (381)
T COG3055 370 SLSWDG 375 (381)
T ss_pred EEEEcC
Confidence 654443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-15 Score=158.97 Aligned_cols=264 Identities=17% Similarity=0.293 Sum_probs=186.9
Q ss_pred CCCcEEEeecCC-------CCCCCCcceEEEEECC--EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 61 DTMVWSTLATTG-------QGPGPRDSHSAILWGH--KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 61 ~t~sW~~l~~~g-------~~P~pR~~hsa~~~~~--~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
-+..|..++... ..|..|.+|.++...+ .||++||+++...+.|+|.|+...+.|+.++.....|.+|.+|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 355788776544 4588999999998754 9999999999999999999999999999998888899999999
Q ss_pred EEEEEc-CCEEEEEccccCC----CCcccceEEEEecCCCceeeccccC---CCCCCCCcceeeeecCE--EEEEeccCC
Q 006334 132 TATLVG-DDKMVIFGGSGEG----EANYLNDLHVLDLKTMRWASPAVKG---DIPVPRDSHSSNVIANR--LFVYGGDCG 201 (650)
Q Consensus 132 s~~~~~-~~~Lyv~GG~~~~----~~~~~~dv~~yd~~t~~Wt~i~~~~---~lP~~R~~hs~v~~~~~--Iyv~GG~~~ 201 (650)
-++... ..+||+.|-+-.. ......|+|+||.+++.|..+.... .-|...+.|.+++.+++ ||||||..-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 998763 2489999987432 2234689999999999999876433 46778999999999877 999999642
Q ss_pred ---CCccCeEEEEECCCCcEEEeeecC-------CCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 202 ---DQYHGDIDMLDMNSLTWSRLAIIG-------SSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 202 ---~~~~n~v~~yd~~t~~W~~i~~~g-------~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
......+|.||.....|..+...- .-...|.+|+|-.. ++.+|++||.....-++-.+.||+....=.
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~ 476 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVD 476 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccch
Confidence 245678999999999999876421 11235777877655 458999999987777777788877655433
Q ss_pred EeecC-----CCCCCCcceeEEEEE---CCeEEEEcCCCCCCC-----CCCcEEEEecCCCCCCCcccc
Q 006334 270 QLDTC-----GQQPQGRFSHAAVVT---GSDIVIYGGCGEDER-----PLNELLVLQLGAEHPNYRYNI 325 (650)
Q Consensus 270 ~l~~~-----~~~p~~R~~hsav~~---~~~lyV~GG~~~~~~-----~~~d~~~l~l~~~~~~~~~~~ 325 (650)
.+... ...|+..+..- ++. ...|.+.-|...... ..+.+|++.+...++...+++
T Consensus 477 ~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 477 IISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhh
Confidence 33211 11122111111 222 244665555543321 345677777765554444433
No 31
>PF13964 Kelch_6: Kelch motif
Probab=98.91 E-value=3.1e-09 Score=81.31 Aligned_cols=49 Identities=41% Similarity=0.674 Sum_probs=44.9
Q ss_pred CCcceEEEEECCEEEEEcccCC-CcCcCeEEEEECCCCcEEeeecCCCCCCCC
Q 006334 77 PRDSHSAILWGHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPR 128 (650)
Q Consensus 77 pR~~hsa~~~~~~lyVfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 128 (650)
||.+|++++++++||||||... ...++++++||+.+++|+++ .++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC---CCCCCCC
Confidence 6899999999999999999988 67799999999999999998 5778776
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.90 E-value=3.1e-09 Score=81.29 Aligned_cols=49 Identities=39% Similarity=0.697 Sum_probs=45.1
Q ss_pred CcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCC
Q 006334 27 ERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR 78 (650)
||.+|++++++++||||||... ...++++++||+.+++|+.++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC---CCCC
Confidence 6899999999999999999987 78899999999999999999877 6666
No 33
>PLN02772 guanylate kinase
Probab=98.74 E-value=5.7e-08 Score=104.42 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=80.4
Q ss_pred cCCCCCCCcceeEEEEECCEEEEEccCCCCc-ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccC
Q 006334 20 VLGFNPPERWGHSACYSHGAVYIFGGCCGGL-HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTN 97 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~-~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~ 97 (650)
..|+-..++..|+++.+++++|||||.+... ..+.+|+||..+++|......|.+|.||.+|+++++ +++|+|+++..
T Consensus 17 ~~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 17 TNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ccCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 4566677999999999999999999987654 789999999999999999999999999999999998 58999999865
Q ss_pred CCcCcCeEEEEECCCC
Q 006334 98 GYKKVNDLHILDLESK 113 (650)
Q Consensus 98 ~~~~~ndv~~yD~~t~ 113 (650)
... +++|.+...|.
T Consensus 97 ~~~--~~~w~l~~~t~ 110 (398)
T PLN02772 97 APD--DSIWFLEVDTP 110 (398)
T ss_pred CCc--cceEEEEcCCH
Confidence 543 78999988764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.67 E-value=4.7e-08 Score=74.46 Aligned_cols=47 Identities=38% Similarity=0.814 Sum_probs=41.5
Q ss_pred CCEEEEEccCC--CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 37 HGAVYIFGGCC--GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 37 ~~~IyvfGG~~--~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
+++||||||.+ ....++++|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 678889999999999999998 445999999999864
No 35
>PLN02772 guanylate kinase
Probab=98.67 E-value=1.2e-07 Score=102.07 Aligned_cols=88 Identities=20% Similarity=0.427 Sum_probs=77.3
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCc-CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCc
Q 006334 75 PGPRDSHSAILWGHKMIVFGGTNGYK-KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEAN 153 (650)
Q Consensus 75 P~pR~~hsa~~~~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~ 153 (650)
..++.+++++.+++++||+||.+... ..+++|+||..+.+|......+..|.+|.+|+++++.+++|+|+++-...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 45899999999999999999988765 68999999999999999988999999999999999999999999875432
Q ss_pred ccceEEEEecCCC
Q 006334 154 YLNDLHVLDLKTM 166 (650)
Q Consensus 154 ~~~dv~~yd~~t~ 166 (650)
-.++|.+..+|.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 267898887663
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.66 E-value=4.4e-08 Score=74.64 Aligned_cols=47 Identities=45% Similarity=0.931 Sum_probs=42.0
Q ss_pred CCEEEEEcccC--CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEE
Q 006334 87 GHKMIVFGGTN--GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV 136 (650)
Q Consensus 87 ~~~lyVfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~ 136 (650)
+++||||||.+ ....++|+|+||+.+++|+++ +.+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 566689999999999999998 788999999999863
No 37
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.63 E-value=4.5e-06 Score=84.55 Aligned_cols=212 Identities=20% Similarity=0.262 Sum_probs=130.1
Q ss_pred CCCCcceEEEEE---C---CEEEEEcccCCCc-CcCeEEEEECCCCc--------EEeeecCCCCCCCCcccEEEEEc--
Q 006334 75 PGPRDSHSAILW---G---HKMIVFGGTNGYK-KVNDLHILDLESKE--------WMRPECRGAPPSPRESHTATLVG-- 137 (650)
Q Consensus 75 P~pR~~hsa~~~---~---~~lyVfGG~~~~~-~~ndv~~yD~~t~~--------W~~l~~~~~~P~~R~~hs~~~~~-- 137 (650)
|..|.-+.+.+. + ...+|.||.+... .++.+|++...+.. +.+-+..++.|.+|++|++.++.
T Consensus 20 PPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~Sr 99 (337)
T PF03089_consen 20 PPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSR 99 (337)
T ss_pred CCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEEC
Confidence 555666555552 2 2467889987544 46888888776543 33445678999999999999884
Q ss_pred -CCEEEEEccccCCC------------CcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccC--CC
Q 006334 138 -DDKMVIFGGSGEGE------------ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDC--GD 202 (650)
Q Consensus 138 -~~~Lyv~GG~~~~~------------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~--~~ 202 (650)
+..+++|||+..-. -.+.-.++.+|++-+..+... .+.+..+..+|.+.+-++.+|++||.. .+
T Consensus 100 GKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd 178 (337)
T PF03089_consen 100 GKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESD 178 (337)
T ss_pred CcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCC
Confidence 45688999984210 123456888999888877532 335666778899999999999999953 33
Q ss_pred CccCeEEEEECCCC---cEEEeeecCCCCCcccceEEEEE--C-CEEEEEeccCCCc---c--------cCeEEEEECCC
Q 006334 203 QYHGDIDMLDMNSL---TWSRLAIIGSSPGVRAGHAAINI--G-TKVYIIGGVGDKH---Y--------YNDIWILNVST 265 (650)
Q Consensus 203 ~~~n~v~~yd~~t~---~W~~i~~~g~~P~~R~~~s~v~~--~-~~IyI~GG~~~~~---~--------~~dv~~yD~~t 265 (650)
..-..++++..+-- -+.... .+....+..++++. + +..+|+||+.... . -+.|.+-..++
T Consensus 179 ~Rpp~l~rlkVdLllGSP~vsC~---vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~ 255 (337)
T PF03089_consen 179 SRPPRLYRLKVDLLLGSPAVSCT---VLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREP 255 (337)
T ss_pred CCCCcEEEEEEeecCCCceeEEE---ECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCC
Confidence 34445666543211 111111 12233333333332 2 5899999985321 0 12244444445
Q ss_pred CcEEEeecCCCCCCCcceeEEEEECCeEEE
Q 006334 266 CSWSQLDTCGQQPQGRFSHAAVVTGSDIVI 295 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R~~hsav~~~~~lyV 295 (650)
-.|+ +++...|.+++..+-++.+++
T Consensus 256 P~Wt-----~dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 256 PEWT-----GDIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred CCCC-----CCcCcCccccccccCCceEEE
Confidence 5565 345667777777776666443
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.59 E-value=1.2e-07 Score=72.27 Aligned_cols=45 Identities=38% Similarity=0.762 Sum_probs=41.2
Q ss_pred CcceeEEEEECCEEEEEccC---CCCcccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYSHGAVYIFGGC---CGGLHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~---~~~~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
+|.+|++++++++||||||+ ......+++++||+.+++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 4567889999999999999998765
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.57 E-value=7.1e-08 Score=73.31 Aligned_cols=45 Identities=29% Similarity=0.678 Sum_probs=30.9
Q ss_pred CcceeEEEEE-CCEEEEEccCCCC-cccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYS-HGAVYIFGGCCGG-LHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~-~~~IyvfGG~~~~-~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
||.+|+++.+ ++.||||||.+.. ..++++|+||+.+++|++++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6999999998 5899999999865 7999999999999999999544
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.55 E-value=1.3e-07 Score=71.00 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=41.6
Q ss_pred CcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
||.+|++++++++|||+||... ....+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999987 78899999999999999999876
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.55 E-value=1.6e-07 Score=71.56 Aligned_cols=43 Identities=40% Similarity=0.723 Sum_probs=39.0
Q ss_pred CCcceEEEEECCEEEEEccc---CCCcCcCeEEEEECCCCcEEeee
Q 006334 77 PRDSHSAILWGHKMIVFGGT---NGYKKVNDLHILDLESKEWMRPE 119 (650)
Q Consensus 77 pR~~hsa~~~~~~lyVfGG~---~~~~~~ndv~~yD~~t~~W~~l~ 119 (650)
||++|++++++++||||||+ +.....+++++||+++++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 45566899999999999999973
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.50 E-value=1.2e-07 Score=71.97 Aligned_cols=48 Identities=35% Similarity=0.768 Sum_probs=31.2
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
||++|+++.+.+++||||||.+. ....++++|+||+++++|+++. ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-SGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC-CCcccCCEEEEECCCCEEEECC---CCC
Confidence 69999999997799999999954 3468999999999999999874 555
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.47 E-value=2.1e-07 Score=69.96 Aligned_cols=44 Identities=32% Similarity=0.664 Sum_probs=40.5
Q ss_pred CCCcceeeeecCEEEEEeccCC-CCccCeEEEEECCCCcEEEeee
Q 006334 180 PRDSHSSNVIANRLFVYGGDCG-DQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 180 ~R~~hs~v~~~~~Iyv~GG~~~-~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
+|..|++++++++||++||... ...++++++||+.+++|+.++.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999887 7899999999999999999983
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.45 E-value=7.6e-06 Score=83.32 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=109.7
Q ss_pred eEEEEECCEEEEEccCCC----------C------------cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-EC
Q 006334 31 HSACYSHGAVYIFGGCCG----------G------------LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WG 87 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~----------~------------~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~ 87 (650)
|.+++.++++++|-..+- . ........||+.+++++.+... .--++.+-++ -+
T Consensus 2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~d 77 (243)
T PF07250_consen 2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPD 77 (243)
T ss_pred eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCC----CCCcccCcCCCCC
Confidence 667777888888876320 0 0112345799999999988653 2233333333 47
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCC----CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLES----KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t----~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
|++++.||... -.+.+..|++.+ ..|.+. ...+-.+|.+.+.+.+.|++++|+||.... ..+.+..
T Consensus 78 G~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~ 147 (243)
T PF07250_consen 78 GRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPP 147 (243)
T ss_pred CCEEEeCCCCc--cccceEEEecCCCCCCCCceEC--cccccCCCccccceECCCCCEEEEeCcCCC------cccccCC
Confidence 99999999865 234577788765 579875 234789999999999999999999998521 1233332
Q ss_pred CC-----Cceeecccc-CCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcE-EEee
Q 006334 164 KT-----MRWASPAVK-GDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTW-SRLA 222 (650)
Q Consensus 164 ~t-----~~Wt~i~~~-~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-~~i~ 222 (650)
.. ..|..+... ...+...+=+..+.-+++||+++. ++...||..++++ ..++
T Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-------~~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-------RGSIIYDYKTNTVVRTLP 206 (243)
T ss_pred ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-------CCcEEEeCCCCeEEeeCC
Confidence 11 122222211 122333344555555899999988 4678899999977 5665
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.41 E-value=5.2e-07 Score=66.44 Aligned_cols=39 Identities=36% Similarity=0.643 Sum_probs=35.7
Q ss_pred CCCCcceeEEEEECCEEEEEccCC--CCcccceEEEEECCC
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCC--GGLHFGDVLMLNLDT 62 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~--~~~~~~dv~~yD~~t 62 (650)
.|.+|.+|++++++++||||||.. ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 488999999999999999999998 477899999999876
No 46
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.39 E-value=1.3e-05 Score=81.26 Aligned_cols=174 Identities=19% Similarity=0.288 Sum_probs=112.2
Q ss_pred CCCCCcccEEEEEc-----C-CEEEEEccccCCCCcccceEEEEecCCC--------ceeeccccCCCCCCCCcceeeee
Q 006334 124 PPSPRESHTATLVG-----D-DKMVIFGGSGEGEANYLNDLHVLDLKTM--------RWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 124 ~P~~R~~hs~~~~~-----~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--------~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
+|..| +.+.+.+. + ...+|-||+ ..+++..+.+|+...+.. ...+.+..+++|.+|++|++.++
T Consensus 19 LPPLR-~PAv~~~~~~~~~~~~~YlIHGGr-TPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV 96 (337)
T PF03089_consen 19 LPPLR-CPAVCHLSDPSDGEPEQYLIHGGR-TPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVV 96 (337)
T ss_pred CCCCC-CccEeeecCCCCCCeeeEEecCCc-CCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEE
Confidence 34444 55555551 1 245577888 456777888888876532 23445567899999999999877
Q ss_pred c----CEEEEEeccCCC--------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccC-
Q 006334 190 A----NRLFVYGGDCGD--------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVG- 250 (650)
Q Consensus 190 ~----~~Iyv~GG~~~~--------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~- 250 (650)
. ...++|||.+-. .....|+.+|++-+..+.-. .+.+-.+.++|.+.+-+|.+|++||..
T Consensus 97 ~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 97 HSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred EECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEc
Confidence 3 458899995422 12345888999888877654 235667789999999999999999975
Q ss_pred -CCcccCeEEEEECCCCc---EEEeecCCCCCCCcceeEEEEE---CCeEEEEcCCCCCC
Q 006334 251 -DKHYYNDIWILNVSTCS---WSQLDTCGQQPQGRFSHAAVVT---GSDIVIYGGCGEDE 303 (650)
Q Consensus 251 -~~~~~~dv~~yD~~t~~---W~~l~~~~~~p~~R~~hsav~~---~~~lyV~GG~~~~~ 303 (650)
.+.....++++.++--. +..... +..+..-.++++. .++.+|+||+..+.
T Consensus 176 ~sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 176 ESDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred cCCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEecccccc
Confidence 34445567777554221 111111 2233333344443 46789999987554
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.35 E-value=8.4e-07 Score=65.30 Aligned_cols=39 Identities=46% Similarity=0.761 Sum_probs=35.1
Q ss_pred CCCCCcceEEEEECCEEEEEcccCC--CcCcCeEEEEECCC
Q 006334 74 GPGPRDSHSAILWGHKMIVFGGTNG--YKKVNDLHILDLES 112 (650)
Q Consensus 74 ~P~pR~~hsa~~~~~~lyVfGG~~~--~~~~ndv~~yD~~t 112 (650)
.|.+|++|++++++++||||||++. ...++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 3889999999999999999999984 56689999999876
No 48
>smart00612 Kelch Kelch domain.
Probab=98.16 E-value=2.7e-06 Score=63.20 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.1
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH 88 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~ 88 (650)
+|||+||.......+++++||+.+++|+.++.+ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999987767789999999999999998877 78999999988764
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.16 E-value=0.00012 Score=74.53 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=100.7
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCC
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIP 178 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP 178 (650)
..--.||+.+++++.+.. ..--++.+.++..|+++++.||..++ ...+..|++.+ ..|.+.. ..|.
T Consensus 46 a~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~--~~m~ 115 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESP--NDMQ 115 (243)
T ss_pred EEEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECc--cccc
Confidence 345689999999998743 34445555666678999999998542 24566777754 5788643 2488
Q ss_pred CCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCC-----CcEEEeeec-CCCCCcccceEEEEECCEEEEEeccCC
Q 006334 179 VPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNS-----LTWSRLAII-GSSPGVRAGHAAINIGTKVYIIGGVGD 251 (650)
Q Consensus 179 ~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t-----~~W~~i~~~-g~~P~~R~~~s~v~~~~~IyI~GG~~~ 251 (650)
.+|+..+++.+ +++++|+||... ...+.+.... ..|..+... ...+...+-+....-+++||+++.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--- 188 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--- 188 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc---
Confidence 99999999887 689999999762 2223333211 123223211 123445566667777899999976
Q ss_pred CcccCeEEEEECCCCcE-EEeec
Q 006334 252 KHYYNDIWILNVSTCSW-SQLDT 273 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~~W-~~l~~ 273 (650)
.+..+||..++++ ..++.
T Consensus 189 ----~~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 ----RGSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred ----CCcEEEeCCCCeEEeeCCC
Confidence 3678899999987 56654
No 50
>smart00612 Kelch Kelch domain.
Probab=98.15 E-value=3.2e-06 Score=62.78 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=41.8
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT 241 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~ 241 (650)
+||++||.......+++++||+.+++|+.++ +++.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999877677899999999999999987 7889999999988764
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.99 E-value=0.0032 Score=63.70 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=113.6
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEEC-----CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILWG-----HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS 126 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~~-----~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~ 126 (650)
..++++||.|.+|..++...........+ ...-++ =||+.+...........+.+|+..++.|+.+... ++.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CCC
Confidence 57999999999999997532110001111 111122 1565554432222345789999999999997522 221
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCC----CcceeeeecCEEEEEeccCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPR----DSHSSNVIANRLFVYGGDCG 201 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R----~~hs~v~~~~~Iyv~GG~~~ 201 (650)
.......+.+ ++.||-+.-.... .....+..||+.+++|.. ++ +|..+ ....++.++++|.++.....
T Consensus 92 ~~~~~~~v~~-~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 92 HPLKSRGVCI-NGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred ccccCCeEEE-CCEEEEEEEECCC--CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCC
Confidence 1112224444 7888887644211 111268999999999995 44 33322 23456677888888765432
Q ss_pred CCccCeEEEEE-CCCCcEEEeeecCCCCCccc----ceEEEEECCEEEEEeccCCCcccCe-EEEEECCCC
Q 006334 202 DQYHGDIDMLD-MNSLTWSRLAIIGSSPGVRA----GHAAINIGTKVYIIGGVGDKHYYND-IWILNVSTC 266 (650)
Q Consensus 202 ~~~~n~v~~yd-~~t~~W~~i~~~g~~P~~R~----~~s~v~~~~~IyI~GG~~~~~~~~d-v~~yD~~t~ 266 (650)
.. .-++|+++ -....|+++-.....+.... ....+..+++|++.... .... +..||+.++
T Consensus 165 ~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~----~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 165 TN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED----ENPFYIFYYNVGEN 230 (230)
T ss_pred CC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC----CCceEEEEEeccCC
Confidence 11 13677775 44567998665432112211 23445667888887542 1123 889998764
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.53 E-value=0.025 Score=57.14 Aligned_cols=184 Identities=19% Similarity=0.192 Sum_probs=103.8
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCC---CcccEEEE-E----cCCEEEEEccccCCCCcccceEEEEecCCCceeecccc
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSP---RESHTATL-V----GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK 174 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~---R~~hs~~~-~----~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~ 174 (650)
..++++||.|++|..++. ++.+ ...+.... + .+=|++.+.... . ......+++|++.+++|..+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~-~~~~~~~~Vys~~~~~Wr~~~~~ 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-G-NRNQSEHQVYTLGSNSWRTIECS 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeec-C-CCCCccEEEEEeCCCCccccccC
Confidence 578999999999999832 2211 11111111 1 012455554321 1 11235789999999999987621
Q ss_pred CCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-eeecCCCCCcc----cceEEEEECCEEEEEecc
Q 006334 175 GDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-LAIIGSSPGVR----AGHAAINIGTKVYIIGGV 249 (650)
Q Consensus 175 ~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-i~~~g~~P~~R----~~~s~v~~~~~IyI~GG~ 249 (650)
.+........+.+++.||-+.-.........+..||+.+.+|.+ ++ +|..+ .....+..+++|.++...
T Consensus 89 --~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 89 --PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred --CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEec
Confidence 12111222367789998887643321111269999999999995 54 23322 234567778888887653
Q ss_pred CCCcccCeEEEEE-CCCCcEEEeecCCC--CCCCcc--eeEEEEECCeEEEEcC
Q 006334 250 GDKHYYNDIWILN-VSTCSWSQLDTCGQ--QPQGRF--SHAAVVTGSDIVIYGG 298 (650)
Q Consensus 250 ~~~~~~~dv~~yD-~~t~~W~~l~~~~~--~p~~R~--~hsav~~~~~lyV~GG 298 (650)
... ..-+||+++ .....|+++-.... .+.-+. ....+..+++|++...
T Consensus 163 ~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 163 KDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 221 225888886 44667998544321 111111 1233445677777654
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.51 E-value=0.072 Score=58.42 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=135.7
Q ss_pred cCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCC-----CCCCCcceE
Q 006334 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQ-----GPGPRDSHS 82 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~-----~P~pR~~hs 82 (650)
..+..|...-..+ .+......+.++.+++||+.... ..++.||..++ .|+.-..... .+.++...+
T Consensus 43 ~~~~~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
T PRK11138 43 TPTTVWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG 115 (394)
T ss_pred CcceeeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccc
Confidence 3445787532222 22212233457789999997653 36899998755 4875322100 001233344
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEE
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHV 160 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~ 160 (650)
.++.+++||+.+. ...++.||.++. .|+.- .+... .+.-++.++.+|+..+. ..++.
T Consensus 116 ~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~-----~~~~~--~ssP~v~~~~v~v~~~~--------g~l~a 174 (394)
T PRK11138 116 VTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTK-----VAGEA--LSRPVVSDGLVLVHTSN--------GMLQA 174 (394)
T ss_pred cEEECCEEEEEcC------CCEEEEEECCCCCCccccc-----CCCce--ecCCEEECCEEEEECCC--------CEEEE
Confidence 5667889887432 246899999876 59763 11111 12222336777774332 35899
Q ss_pred EecCCCc--eeeccccCCCCC--CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecC--CCCC---
Q 006334 161 LDLKTMR--WASPAVKGDIPV--PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIG--SSPG--- 229 (650)
Q Consensus 161 yd~~t~~--Wt~i~~~~~lP~--~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g--~~P~--- 229 (650)
||.++++ |+.-. ..|. .+...+.+..++.+|+..+ + ..++.+|..+.+ |+.-.... ....
T Consensus 175 ld~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 175 LNESDGAVKWTVNL---DVPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred EEccCCCEeeeecC---CCCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcc
Confidence 9998764 87532 1111 1222344455677766443 2 468888887764 86422100 0000
Q ss_pred cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCC
Q 006334 230 VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLN 307 (650)
Q Consensus 230 ~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~ 307 (650)
.....+-++.++.+|+.+. ...++++|+.+.+ |+.-. ... ...++.++.||+... ..
T Consensus 246 ~~~~~sP~v~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~~~~-------~g 304 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAY------NGNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYLVDQ-------ND 304 (394)
T ss_pred cccCCCcEEECCEEEEEEc------CCeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEEEcC-------CC
Confidence 0112344567888888642 2479999998865 76521 111 134566888888743 23
Q ss_pred cEEEEecC
Q 006334 308 ELLVLQLG 315 (650)
Q Consensus 308 d~~~l~l~ 315 (650)
.++.++..
T Consensus 305 ~l~ald~~ 312 (394)
T PRK11138 305 RVYALDTR 312 (394)
T ss_pred eEEEEECC
Confidence 57777764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.26 E-value=0.11 Score=56.87 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=108.6
Q ss_pred ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCC-
Q 006334 53 GDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSP- 127 (650)
Q Consensus 53 ~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~- 127 (650)
+.++.||..+++ |+.-..... ...+...+-++.++.+|+..+ ...++.+|..+. .|+.- . ..+...
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~-~-~~~~~~~ 240 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPS-LTLRGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQR-I-SQPTGAT 240 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCc-ccccCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhheec-c-ccCCCcc
Confidence 358888887665 765322100 011222233445677766433 245888888876 48642 1 111100
Q ss_pred ---C---cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCcceeeeecCEEEEEecc
Q 006334 128 ---R---ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGD 199 (650)
Q Consensus 128 ---R---~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~ 199 (650)
| ...+-++. ++.+|+.+.. ..++++|+.+. .|+.-. ... ...+..++.||+...
T Consensus 241 ~~~~~~~~~~sP~v~-~~~vy~~~~~--------g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~~~~- 302 (394)
T PRK11138 241 EIDRLVDVDTTPVVV-GGVVYALAYN--------GNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYLVDQ- 302 (394)
T ss_pred chhcccccCCCcEEE-CCEEEEEEcC--------CeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEEEcC-
Confidence 1 11122333 6788875431 35889999876 487521 111 134566889998753
Q ss_pred CCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCC
Q 006334 200 CGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCG 275 (650)
Q Consensus 200 ~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~ 275 (650)
...++.+|..+.+ |+.-. ...+...+.++.+++||+... ...++++|..+.+ |+.-
T Consensus 303 -----~g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~~~~~~~---- 362 (394)
T PRK11138 303 -----NDRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS------EGYLHWINREDGRFVAQQK---- 362 (394)
T ss_pred -----CCeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC------CCEEEEEECCCCCEEEEEE----
Confidence 2579999998764 76422 112333445567888887632 2368889988875 4431
Q ss_pred CCCCCcceeEEEEECCeEEEE
Q 006334 276 QQPQGRFSHAAVVTGSDIVIY 296 (650)
Q Consensus 276 ~~p~~R~~hsav~~~~~lyV~ 296 (650)
........+.++.++.|||-
T Consensus 363 -~~~~~~~s~P~~~~~~l~v~ 382 (394)
T PRK11138 363 -VDSSGFLSEPVVADDKLLIQ 382 (394)
T ss_pred -cCCCcceeCCEEECCEEEEE
Confidence 11223444556778888777
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.89 E-value=0.9 Score=49.28 Aligned_cols=224 Identities=19% Similarity=0.227 Sum_probs=119.9
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEE
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~y 108 (650)
.+.++.++.||+.... ..++.||..+++ |..-... +...+.++.++.+|+.+ .+ ..++.|
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~-~~-----g~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGT-EK-----GEVIAL 120 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEc-CC-----CEEEEE
Confidence 3456678888886542 369999987654 8653222 11223345567777643 22 479999
Q ss_pred ECCCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCcc
Q 006334 109 DLESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 109 D~~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~h 184 (650)
|..+. .|+.- .+... ..+.+ +.++.+|+..+. ..++.+|++++ .|+.-...... ..+...
T Consensus 121 d~~tG~~~W~~~-----~~~~~-~~~p~-v~~~~v~v~~~~--------g~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~ 184 (377)
T TIGR03300 121 DAEDGKELWRAK-----LSSEV-LSPPL-VANGLVVVRTND--------GRLTALDAATGERLWTYSRVTPAL-TLRGSA 184 (377)
T ss_pred ECCCCcEeeeec-----cCcee-ecCCE-EECCEEEEECCC--------CeEEEEEcCCCceeeEEccCCCce-eecCCC
Confidence 98776 48753 11111 11222 335777764331 35889998765 57743211110 112223
Q ss_pred eeeeecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecC--CCCCcc---cceEEEEECCEEEEEeccCCCcccCe
Q 006334 185 SSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIG--SSPGVR---AGHAAINIGTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 185 s~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g--~~P~~R---~~~s~v~~~~~IyI~GG~~~~~~~~d 257 (650)
+.+..++.+|+ |..+ ..++.+|+.+. .|+.-...+ .....| ...+.++.++.+|+... ...
T Consensus 185 sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~ 252 (377)
T TIGR03300 185 SPVIADGGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGR 252 (377)
T ss_pred CCEEECCEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCE
Confidence 44555665554 4322 37889998765 476422100 000001 12334456778887642 246
Q ss_pred EEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 258 IWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 258 v~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++||+++.+ |..-. . ...+.++.++.||+... ...++.++..
T Consensus 253 l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~-------~G~l~~~d~~ 297 (377)
T TIGR03300 253 VAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA-------DGVVVALDRR 297 (377)
T ss_pred EEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC-------CCeEEEEECC
Confidence 9999998764 65421 1 11234456778887742 2357777764
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.67 E-value=0.82 Score=45.63 Aligned_cols=186 Identities=23% Similarity=0.301 Sum_probs=106.7
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
.+..++.+|+..+ ...++.||..+++ |+.-... +........++.||+..+- +.++.+|.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~------~~l~~~d~ 93 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD------GSLYALDA 93 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT------SEEEEEET
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce------eeeEeccc
Confidence 3447899999742 4579999997765 6654321 2222247778999887621 37999998
Q ss_pred CCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCC------
Q 006334 111 ESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVP------ 180 (650)
Q Consensus 111 ~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~------ 180 (650)
.+. .|+..... ..+..........+.++.+|+... ...++.+|++++ .|.... ..+..
T Consensus 94 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~ 161 (238)
T PF13360_consen 94 KTGKVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISS 161 (238)
T ss_dssp TTSCEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEES---STT-SS--EEE
T ss_pred CCcceeeeecccc-ccccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeec---CCCCCCcceee
Confidence 877 49832111 122222222223333566666543 136899998876 466522 11111
Q ss_pred --CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccC
Q 006334 181 --RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYN 256 (650)
Q Consensus 181 --R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~ 256 (650)
......+..++.+|+..+.. .+..+|..+.+ |+.. .. -........++.+|+.. . ..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~------~~~~~~~~~~~~l~~~~-~-----~~ 222 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS------GIYSLPSVDGGTLYVTS-S-----DG 222 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T-----TT
T ss_pred ecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC------CccCCceeeCCEEEEEe-C-----CC
Confidence 11233344467888876632 26777999887 7432 11 11222455567777775 2 35
Q ss_pred eEEEEECCCCc
Q 006334 257 DIWILNVSTCS 267 (650)
Q Consensus 257 dv~~yD~~t~~ 267 (650)
.++++|+++++
T Consensus 223 ~l~~~d~~tG~ 233 (238)
T PF13360_consen 223 RLYALDLKTGK 233 (238)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCC
Confidence 89999999875
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.57 E-value=0.91 Score=49.25 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=110.5
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
+.++.+|+..+ ...++.+|..+++ |+.-..... ...+...+.++.++.+| +|..+ ..++.+|+.+
T Consensus 143 v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~t 209 (377)
T TIGR03300 143 VANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQT 209 (377)
T ss_pred EECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECCC-----CEEEEEEccC
Confidence 34555555332 2458888987654 765322100 01122233455566554 44322 3688999887
Q ss_pred C--cEEeeecCCCCCCC-----C---cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCC
Q 006334 113 K--EWMRPECRGAPPSP-----R---ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVP 180 (650)
Q Consensus 113 ~--~W~~l~~~~~~P~~-----R---~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~ 180 (650)
. .|+.-. ..+.. + ...+.+ +.++.+|+.... ..+++||..+. .|..- ..
T Consensus 210 G~~~W~~~~---~~~~g~~~~~~~~~~~~~p~-~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~~-----~~-- 270 (377)
T TIGR03300 210 GQPLWEQRV---ALPKGRTELERLVDVDGDPV-VDGGQVYAVSYQ--------GRVAALDLRSGRVLWKRD-----AS-- 270 (377)
T ss_pred CCEeeeecc---ccCCCCCchhhhhccCCccE-EECCEEEEEEcC--------CEEEEEECCCCcEEEeec-----cC--
Confidence 6 476421 11111 1 111222 335777775432 35889998765 47642 11
Q ss_pred CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 181 R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
...+.+..++++|+... ...++++|..+. .|+.-. . ..+...+.++.++.||+.. ....+
T Consensus 271 -~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~----~-~~~~~ssp~i~g~~l~~~~------~~G~l 332 (377)
T TIGR03300 271 -SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE----L-KYRQLTAPAVVGGYLVVGD------FEGYL 332 (377)
T ss_pred -CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc----c-cCCccccCEEECCEEEEEe------CCCEE
Confidence 12234556888988643 247999998765 476522 1 1122333455677777752 12468
Q ss_pred EEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcC
Q 006334 259 WILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298 (650)
Q Consensus 259 ~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG 298 (650)
+++|..+.+ |+. + ........+.++.+++|||.+.
T Consensus 333 ~~~d~~tG~~~~~~-~----~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 333 HWLSREDGSFVARL-K----TDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEEECCCCCEEEEE-E----cCCCccccCCEEECCEEEEEeC
Confidence 899987664 432 2 1222344556777888776643
No 58
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.75 E-value=0.78 Score=45.25 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=81.3
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC-CCCcccEEEEEcC-CEEEEEccccCCCCcccceEEE
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP-SPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHV 160 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~ 160 (650)
++...+++|+|-| +.+|+++..........+....| .+..--++....+ +++|+|-|. ..|+
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~---------~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD---------KYWV 75 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC---------EEEE
Confidence 3444699999977 46888876522211111111111 1222334444444 899999774 4888
Q ss_pred EecCCCceeeccccC--CCCC--CCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCCCCC
Q 006334 161 LDLKTMRWASPAVKG--DIPV--PRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGSSPG 229 (650)
Q Consensus 161 yd~~t~~Wt~i~~~~--~lP~--~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~~P~ 229 (650)
||..+..+.-..... .++. .....+.... ++++|+|.| +..|+||..+.+... +.. -..+|.
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 886643332111000 1111 1122222222 579999988 678999876654321 110 011222
Q ss_pred cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 230 VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 230 ~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
....+....++++|+|-| +..|+||..+++
T Consensus 149 -~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 149 -KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred -CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 122333333478999977 479999998775
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.62 E-value=3 Score=42.32 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=108.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.||+.-- ....++++|+.+..-..+... . ..++++. ++++|+... ..+.++|+.+.+
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence 467777633 235799999999876655443 1 3444544 688888654 345777999999
Q ss_pred EEeeecCCCCC-CCCcccEEEEEcCCEEEEEccccCCCCccc--ceEEEEecCCCceeeccccCCCCCCCCcceeeee-c
Q 006334 115 WMRPECRGAPP-SPRESHTATLVGDDKMVIFGGSGEGEANYL--NDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-A 190 (650)
Q Consensus 115 W~~l~~~~~~P-~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~--~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~ 190 (650)
++.+....... ......-+++..++.||+---. ....... ..++++++. .+...+.. .+. .-..++.. +
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~-~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~---~pNGi~~s~d 144 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSG-GGGASGIDPGSVYRIDPD-GKVTVVAD--GLG---FPNGIAFSPD 144 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEEC-CBCTTCGGSEEEEEEETT-SEEEEEEE--EES---SEEEEEEETT
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecC-CCccccccccceEEECCC-CeEEEEec--Ccc---cccceEECCc
Confidence 98763321111 2222334455567887774221 1111112 679999988 66554331 111 11223322 3
Q ss_pred -CEEEEEeccCCCCccCeEEEEECC--CCcEEEeeecCCCCCcc-cceEEEE-ECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 191 -NRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAIIGSSPGVR-AGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 191 -~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~~g~~P~~R-~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+.||+.- ...+.+++|++. ...+.........+... .--.+++ .++.||+..- ....|++||++-
T Consensus 145 g~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G 214 (246)
T PF08450_consen 145 GKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDG 214 (246)
T ss_dssp SSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTS
T ss_pred chheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCc
Confidence 4577642 234679999885 33344333211222221 2223333 3578999832 235899999996
Q ss_pred CcEEEee
Q 006334 266 CSWSQLD 272 (650)
Q Consensus 266 ~~W~~l~ 272 (650)
..-..+.
T Consensus 215 ~~~~~i~ 221 (246)
T PF08450_consen 215 KLLREIE 221 (246)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 6666665
No 60
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.55 E-value=1 Score=44.40 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=80.7
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCC-CCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEE
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGP-GPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P-~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD 109 (650)
++...+.+|+|-| +.+|+++...............| .+..--++... . +++|+|-| +.+|+||
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~~~ 77 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWVYT 77 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEEEc
Confidence 3445699999988 36888876522222211111111 11111222232 3 89999977 5788898
Q ss_pred CCCCcEE---eeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-----ccc-cCCCCC
Q 006334 110 LESKEWM---RPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAV-KGDIPV 179 (650)
Q Consensus 110 ~~t~~W~---~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~-~~~lP~ 179 (650)
..+..+. .+..-+.++.+..--++.... ++++|+|-|. ..|+||..+++... +.. -..+|.
T Consensus 78 ~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 78 GKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred CcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 7642221 111001111112223333343 6899999884 47888876554321 100 012332
Q ss_pred CCCcceeeeec-CEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 180 PRDSHSSNVIA-NRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 180 ~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
. -.++.... +++|+|-| +..++||..+.+
T Consensus 149 ~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 149 K--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred C--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 1 22333344 89999988 689999988765
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.34 E-value=0.75 Score=48.25 Aligned_cols=113 Identities=17% Similarity=0.286 Sum_probs=68.2
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecccc--CCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK--GDIPV 179 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~--~~lP~ 179 (650)
...++.||..+.+|..+ +..... .-..+....+++||+.|-.... ......+-.||..+.+|+.+... ..+|.
T Consensus 15 C~~lC~yd~~~~qW~~~---g~~i~G-~V~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP---GNGISG-TVTDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecC---CCCceE-EEEEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 68899999999999886 222111 1223333346788877755322 22345688999999999887642 24555
Q ss_pred CCCcceeeeec-CEEEEEeccCCCCccCeEEEEECCCCcEEEeee
Q 006334 180 PRDSHSSNVIA-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 180 ~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
+.........+ +.+++.|... .-..-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 53222222223 4677777642 122345556 4778999874
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.92 E-value=0.73 Score=49.80 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=74.6
Q ss_pred cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCc-------cCeEE
Q 006334 137 GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY-------HGDID 209 (650)
Q Consensus 137 ~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~-------~n~v~ 209 (650)
.+++|+.++.. ..+.+||.++..-...+ .++.+...-.++.++++||++........ .-++.
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 46888888654 23789999988777544 55555566677778999999988543221 22333
Q ss_pred EEE--------CCCCcEEEeeecCCCCCccc-------ceEEEEE-CCEEEE-EeccCCCcccCeEEEEECCCCcEEEee
Q 006334 210 MLD--------MNSLTWSRLAIIGSSPGVRA-------GHAAINI-GTKVYI-IGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 210 ~yd--------~~t~~W~~i~~~g~~P~~R~-------~~s~v~~-~~~IyI-~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
.|+ .....|..++ ++|..+. -.+-+++ +.+|+| .-|.. .-.|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 344 2344677766 3443332 2334445 568888 32221 24899999999999984
Q ss_pred c
Q 006334 273 T 273 (650)
Q Consensus 273 ~ 273 (650)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 3
No 63
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.75 E-value=7.8 Score=43.07 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.++....+... +.. .......-++ +|++....++ ..++|.+|+.+...+.+.. .+. ...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~---~~~--~~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGM-TFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD---SPA--IDT 293 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCc-ccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC---CCC--ccC
Confidence 5899999999887776543 211 1122223355 4444332222 3689999999988776521 111 111
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
......+++.++|..... . ...+|++|..+.....+... ..........-+++.+++...... ...++.+
T Consensus 294 ~~~~spDG~~i~f~s~~~--g--~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~ 363 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRS--G--SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG--QFSIGVM 363 (435)
T ss_pred ceeEcCCCCEEEEEECCC--C--CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC--ceEEEEE
Confidence 123333555444433211 1 24789999887766665411 111111111223433333322221 2478899
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcc-cCeEEEEECCCCcEEEee
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHY-YNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~-~~dv~~yD~~t~~W~~l~ 272 (650)
|+.+.....+... .........-+++.+++-....... ...+|.+|+....-..+.
T Consensus 364 d~~~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 364 KPDGSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 9877766555421 1122223334555555543322221 257999999887666654
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.55 E-value=5.5 Score=39.59 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=114.7
Q ss_pred ceEEEEECCCCc--EEEeecCCCCCCCCcceE--EEEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCCCCC
Q 006334 53 GDVLMLNLDTMV--WSTLATTGQGPGPRDSHS--AILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGAPPS 126 (650)
Q Consensus 53 ~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hs--a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~ 126 (650)
..+..+|+.+++ |+.-. . . ...... .+..++.+|+.. ....++.||..+.+ |+.- .+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~-~-~---~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~-----~~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-G-P---GIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFD-----LPG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-S-S---SCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEEE-----CSS
T ss_pred CEEEEEECCCCCEEEEEEC-C-C---CCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEee-----ccc
Confidence 357888886654 76632 1 1 122222 344788999873 24689999998874 7763 122
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee-ccccCCCCCCCCcceeeeecCEEEEEeccCCCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS-PAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ 203 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~-i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~ 203 (650)
+-... .. ..++.+|+.... +.++.+|..+. .|+. ........ .+........++.+|+...
T Consensus 67 ~~~~~-~~-~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 67 PISGA-PV-VDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp CGGSG-EE-EETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-----
T ss_pred cccce-ee-ecccccccccce--------eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-----
Confidence 11122 33 336888876521 26899997765 5883 32111111 2223334444667776653
Q ss_pred ccCeEEEEECCCCc--EEEeeecCCCCC-------cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEee
Q 006334 204 YHGDIDMLDMNSLT--WSRLAIIGSSPG-------VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLD 272 (650)
Q Consensus 204 ~~n~v~~yd~~t~~--W~~i~~~g~~P~-------~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~ 272 (650)
...++.+|+.+++ |..-.. ..+. .......+..++.+|+..+.. .+..+|..++. |+..
T Consensus 131 -~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 131 -SGKLVALDPKTGKLLWKYPVG--EPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp -CSEEEEEETTTTEEEEEEESS--TT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-
T ss_pred -cCcEEEEecCCCcEEEEeecC--CCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-
Confidence 2589999998775 666331 1111 011234444567888886532 26777999987 7433
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.. .........++.||+.. . ...++.+|+.+
T Consensus 201 ~~------~~~~~~~~~~~~l~~~~-~------~~~l~~~d~~t 231 (238)
T PF13360_consen 201 IS------GIYSLPSVDGGTLYVTS-S------DGRLYALDLKT 231 (238)
T ss_dssp SS-------ECECEECCCTEEEEEE-T------TTEEEEEETTT
T ss_pred CC------CccCCceeeCCEEEEEe-C------CCEEEEEECCC
Confidence 21 11112334456666664 1 25788888763
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.45 E-value=9.2 Score=41.78 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=99.5
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcc
Q 006334 51 HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRES 130 (650)
Q Consensus 51 ~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 130 (650)
....+|+.|.....=..+...+. .........+++.++|....+. ...++++|+.+...+.+.. .....
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~----~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~---~~~~~-- 236 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSRE----PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVAS---FPGMN-- 236 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCC----ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeec---CCCCc--
Confidence 34568888876443233322211 1112223335665556544332 2679999999887666521 11111
Q ss_pred cEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eecC-EEEEEeccCCCCccCe
Q 006334 131 HTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIAN-RLFVYGGDCGDQYHGD 207 (650)
Q Consensus 131 hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~~-~Iyv~GG~~~~~~~n~ 207 (650)
.+.....++ .|++..... . ..++|.+|+.++....+...... ..... .-++ +|++.....+ ...
T Consensus 237 ~~~~~spDg~~l~~~~~~~-~----~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~s~dg~~l~~~s~~~g---~~~ 303 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKD-G----NPDIYVMDLDGKQLTRLTNGPGI-----DTEPSWSPDGKSIAFTSDRGG---SPQ 303 (417)
T ss_pred cceEECCCCCEEEEEECCC-C----CccEEEEECCCCCEEECCCCCCC-----CCCEEECCCCCEEEEEECCCC---Cce
Confidence 123333354 455443321 1 25799999988877765421111 11111 1234 4544432222 247
Q ss_pred EEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 208 IDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 208 v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+|.+|+.+..+..+...+. .........+++.+++..... ....++.+|+.+..+..+..
T Consensus 304 iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 304 IYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEccC
Confidence 9999999888887763211 111122233456666654433 23579999999987776653
No 66
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.22 E-value=11 Score=41.69 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=96.1
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+++.|.....=..+...+. ...+....-+++-++|..... ....+|++|+.+.+-+.+.. .+. .....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~----~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~---~~g--~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSRE----PILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITN---FEG--LNGAP 248 (430)
T ss_pred EEEEECCCCCCceEEecCCC----ceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccC---CCC--CcCCe
Confidence 57777776543223322211 111222223554443433322 23579999999988776521 111 11122
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ec-CEEEEEeccCCCCccCeEEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IA-NRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~-~~Iyv~GG~~~~~~~n~v~~y 211 (650)
....+++.+++.-..+ . ..++|++|+++..+..+.. .+. ....... -+ ..|++.....+ ...+|.+
T Consensus 249 ~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~lt~---~~~--~~~~~~~spDg~~i~f~s~~~g---~~~iy~~ 316 (430)
T PRK00178 249 AWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQLSRVTN---HPA--IDTEPFWGKDGRTLYFTSDRGG---KPQIYKV 316 (430)
T ss_pred EECCCCCEEEEEEccC--C--CceEEEEECCCCCeEEccc---CCC--CcCCeEECCCCCEEEEEECCCC---CceEEEE
Confidence 3333554333322211 1 2579999999988876552 111 1111222 13 34554432221 2579999
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|+.+.++..+...+ ..........++ .|++.. ..+. ..+++.+|+.+..++.+..
T Consensus 317 d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~-~~~~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 317 NVNGGRAERVTFVG----NYNARPRLSADGKTLVMVH-RQDG--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEeecCC----CCccceEECCCCCEEEEEE-ccCC--ceEEEEEECCCCCEEEccC
Confidence 99999888875221 111122223344 444443 2222 3469999999998888764
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.21 E-value=1.2 Score=48.61 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=92.2
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEe-eecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMR-PECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
.--+++.+|+++. -.+|..|-+++.-.. +.... .| ...+....++. .++++|+. .-+|.||+.
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~~lqS~~l~~-fP----i~~a~f~p~G~~~i~~s~rr-------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNPKLQSIHLEK-FP----IQKAEFAPNGHSVIFTSGRR-------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccChhheeeeecc-Cc----cceeeecCCCceEEEecccc-------eEEEEeecc
Confidence 3468888988653 356666777665211 11111 11 22333333565 78888873 348999999
Q ss_pred CCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEE
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~Iy 244 (650)
+.+.+++.....++........+..++.++++-|..+ -++.+...++.|..-- .++......+....+.+||
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhee---eeccEEeeEEEecCCcEEE
Confidence 9999887754445533333444556666777777543 5677777787775422 1223333344444455788
Q ss_pred EEeccCCCcccCeEEEEECCCCc
Q 006334 245 IIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
++||. ..+|++|+..+.
T Consensus 361 ~~~~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 361 ASGGT------GEVYVWNLRQNS 377 (514)
T ss_pred EEcCC------ceEEEEecCCcc
Confidence 88874 479999999874
No 68
>PRK13684 Ycf48-like protein; Provisional
Probab=94.20 E-value=9.6 Score=40.98 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=116.6
Q ss_pred CCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 006334 11 RAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHK 89 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~ 89 (650)
.-..|.+..... +.....-.++.+.++..|+.|.. .-+++-+-.-.+|+.+......|. ....+..+ ++.
T Consensus 74 gG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~ 144 (334)
T PRK13684 74 GGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGT 144 (334)
T ss_pred CCCCceECccCC-cccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCc
Confidence 345788644322 11111122333345556665532 235555555678998853211121 22223333 345
Q ss_pred EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEE-ecCCCce
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVL-DLKTMRW 168 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~y-d~~t~~W 168 (650)
+|+.|.. ..+++=+-.-.+|+.+.. +..-..+.+....++.++++|..+ .++.- |....+|
T Consensus 145 ~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW 206 (334)
T PRK13684 145 AEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAW 206 (334)
T ss_pred ceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeE
Confidence 6666542 235554445678998732 222234445555555555555432 23332 3334579
Q ss_pred eeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEE--CCCCcEEEeeecCCCCCc-ccceEEEEE-CCEE
Q 006334 169 ASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLD--MNSLTWSRLAIIGSSPGV-RAGHAAINI-GTKV 243 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd--~~t~~W~~i~~~g~~P~~-R~~~s~v~~-~~~I 243 (650)
+.+. .+..+..++++.. ++.++++|.. ...++. -.-.+|+.+.. +.... ...++++.. ++.+
T Consensus 207 ~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-------G~~~~~s~d~G~sW~~~~~--~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 207 TPHQ----RNSSRRLQSMGFQPDGNLWMLARG-------GQIRFNDPDDLESWSKPII--PEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEee----CCCcccceeeeEcCCCCEEEEecC-------CEEEEccCCCCCccccccC--CccccccceeeEEEcCCCCE
Confidence 8764 2233344444433 5778888652 223342 23357997642 11111 122333333 4578
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
|++|.. .-++.-.-.-.+|+.+......+ ...+.++.. ++++|+.|..
T Consensus 274 ~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 274 WAGGGN------GTLLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEcCC------CeEEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCC
Confidence 888753 22343334456899875321222 234455555 6678887763
No 69
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.17 E-value=6.2 Score=43.34 Aligned_cols=211 Identities=11% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcC------cCeEEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKK------VNDLHILD 109 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~------~ndv~~yD 109 (650)
+++.++|+=..++.....++++|+.++....-.. +.+.... ++.. +++.|++...+.... ...+|+..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----ENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----EEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----cccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 4555565544444445579999999985433211 1122222 4444 456777766655433 67899999
Q ss_pred CCCCcEE--eeecCCCCCCCCc-ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-----ceeeccccCCCCCCC
Q 006334 110 LESKEWM--RPECRGAPPSPRE-SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-----RWASPAVKGDIPVPR 181 (650)
Q Consensus 110 ~~t~~W~--~l~~~~~~P~~R~-~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-----~Wt~i~~~~~lP~~R 181 (650)
+.+..-. .+ - ..+.... ...+....+++.+++.-... .. .+++|.+|.... .|..+.. ...-
T Consensus 209 ~gt~~~~d~lv--f-e~~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~ 278 (414)
T PF02897_consen 209 LGTPQSEDELV--F-EEPDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDDGGSPDAKPKLLSP----REDG 278 (414)
T ss_dssp TTS-GGG-EEE--E-C-TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS
T ss_pred CCCChHhCeeE--E-eecCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccccCCCcCCcEEEeC----CCCc
Confidence 9887543 22 1 1122222 33344444555444332211 11 478999999875 7876541 1111
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc---EE-EeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCe
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT---WS-RLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~---W~-~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~d 257 (650)
..+.+...++.+|+.... +.....+..+++.+.. |. .+. +......--.+...+++|++.-= ......
T Consensus 279 ~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~ 350 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYR---ENGSSR 350 (414)
T ss_dssp -EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEE---ETTEEE
T ss_pred eEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEE---ECCccE
Confidence 223333457889988763 2344688999988765 66 443 22222344555667888887732 223568
Q ss_pred EEEEECCCCcEEEe
Q 006334 258 IWILNVSTCSWSQL 271 (650)
Q Consensus 258 v~~yD~~t~~W~~l 271 (650)
|.+||+. ..|...
T Consensus 351 l~v~~~~-~~~~~~ 363 (414)
T PF02897_consen 351 LRVYDLD-DGKESR 363 (414)
T ss_dssp EEEEETT--TEEEE
T ss_pred EEEEECC-CCcEEe
Confidence 9999998 334433
No 70
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.71 E-value=14 Score=41.30 Aligned_cols=192 Identities=12% Similarity=0.084 Sum_probs=99.6
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
...+|+.|.....-..+..... ........-+++.++|.-... ....+|++|+.+.+-+.+. ..+. ...
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~----~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt---~~~g--~~~ 265 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPE----PLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVT---SFPG--ING 265 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCC----cccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEec---CCCC--CcC
Confidence 4577888876654444433211 112222333554444432211 1357999999988776652 1111 111
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecC-EEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IAN-RLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~-~Iyv~GG~~~~~~~n~v 208 (650)
......+++ |++....+ . ..++|.+|+.+++.+.+.... . ....... -++ .|++.....+ ...+
T Consensus 266 ~~~wSPDG~~La~~~~~~---g--~~~Iy~~dl~tg~~~~lt~~~----~-~~~~p~wSpDG~~I~f~s~~~g---~~~I 332 (448)
T PRK04792 266 APRFSPDGKKLALVLSKD---G--QPEIYVVDIATKALTRITRHR----A-IDTEPSWHPDGKSLIFTSERGG---KPQI 332 (448)
T ss_pred CeeECCCCCEEEEEEeCC---C--CeEEEEEECCCCCeEECccCC----C-CccceEECCCCCEEEEEECCCC---CceE
Confidence 223333444 55443321 1 257999999998887665211 1 1111222 234 4544432222 2589
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|.+|+.+.++..+...+. .........+++.+++.+.... ..++|.+|+.+.....+..
T Consensus 333 y~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~~g--~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 333 YRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNRTNG--KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEecCC--ceEEEEEECCCCCeEEccC
Confidence 999999999988753221 1111233334444444333322 3479999999998887753
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.20 E-value=0.84 Score=47.87 Aligned_cols=123 Identities=21% Similarity=0.282 Sum_probs=73.4
Q ss_pred EEccccC-CCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCC-ccCeEEEEECCCCcEE
Q 006334 143 IFGGSGE-GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWS 219 (650)
Q Consensus 143 v~GG~~~-~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~ 219 (650)
++||.-+ .+.-.+..+..||..+.+|..+.. .+ .-.-..+... +++||+.|-..-.. ....+..||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~i--~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--GI--SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC--Cc--eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 4566422 222246788899999999997541 11 1111233333 56777776543222 4567899999999999
Q ss_pred Eeeec--CCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 220 RLAII--GSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 220 ~i~~~--g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
.+... ..+|.+.........+ +.+++.|... .-..-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 98852 2355554333333333 3688877652 222345555 6779998865
No 72
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.98 E-value=20 Score=40.71 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=80.5
Q ss_pred cCeEEEEECCCCc--EEeeecCCCCCCCCcccEEEEE----cCC---EEEEEccccCCCCcccceEEEEecCCCc--eee
Q 006334 102 VNDLHILDLESKE--WMRPECRGAPPSPRESHTATLV----GDD---KMVIFGGSGEGEANYLNDLHVLDLKTMR--WAS 170 (650)
Q Consensus 102 ~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~----~~~---~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~ 170 (650)
.+.++.+|.++.+ |+.-........-+......+. .++ .++++|... ..++.+|.++.+ |+.
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-------ceEEEEECCCCcEeeEe
Confidence 4589999999874 8753111100000111111111 122 244455442 358899998764 774
Q ss_pred ccccCCCCCCCCcceeeeecCEEEEEeccC------------CCCccCeEEEEECCCCc--EEEeeecCC----CCCccc
Q 006334 171 PAVKGDIPVPRDSHSSNVIANRLFVYGGDC------------GDQYHGDIDMLDMNSLT--WSRLAIIGS----SPGVRA 232 (650)
Q Consensus 171 i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~------------~~~~~n~v~~yd~~t~~--W~~i~~~g~----~P~~R~ 232 (650)
-.. ...+....+.+|+-.... .......++.+|..+.+ |+.-..... ...+..
T Consensus 328 ~~~---------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 328 PEV---------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred Eee---------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 221 011112226666633211 11234578899988665 876431000 001122
Q ss_pred ceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEE--EECCeEEEE
Q 006334 233 GHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAV--VTGSDIVIY 296 (650)
Q Consensus 233 ~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav--~~~~~lyV~ 296 (650)
...+++.++.||+- .. ...++.||.++.+ |+. + ++. ....+.+ ..++++||.
T Consensus 399 ~~~~~~~g~~v~~g-~~-----dG~l~ald~~tG~~lW~~-~----~~~-~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 399 GGSLATAGNLVFAG-AA-----DGYFRAFDATTGKELWKF-R----TPS-GIQATPMTYEVNGKQYVG 454 (488)
T ss_pred CcceEecCCeEEEE-CC-----CCeEEEEECCCCceeeEE-E----CCC-CceEcCEEEEeCCEEEEE
Confidence 33445555555554 32 2469999998875 764 2 222 2222333 458888876
No 73
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.96 E-value=18 Score=40.20 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=110.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++|++|.....=..+..... ...+....-+++.++|...... ...+|++|+.+.+.+.+. ..+.. ..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~----~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~---~~~g~--~~ 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS----LVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVG---NFPGM--TF 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC----CeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEee---cCCCc--cc
Confidence 4578888876543333332211 1122222335554444433221 268999999998887662 11211 11
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eecCEEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
......+++.+++....+. ..++|.+|+.+.....+.. .+. ...... .-+++-++|..... -...+|+
T Consensus 250 ~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~--~~~~~~~spDG~~i~f~s~~~--g~~~Iy~ 318 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPA--IDTSPSYSPDGSQIVFESDRS--GSPQLYV 318 (435)
T ss_pred CcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCC--ccCceeEcCCCCEEEEEECCC--CCCeEEE
Confidence 2223335544333222111 2579999998887766542 111 111112 12344333332111 1257999
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT- 289 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~- 289 (650)
+|..+.....+... ...........+++.+++...... ...++.+|+.+.....+.... ... ...+.
T Consensus 319 ~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~-~p~~sp 386 (435)
T PRK05137 319 MNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG--QFSIGVMKPDGSGERILTSGF-----LVE-GPTWAP 386 (435)
T ss_pred EECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC--ceEEEEEECCCCceEeccCCC-----CCC-CCeECC
Confidence 99988877777521 112222223334444444322221 247999999877766654311 111 12222
Q ss_pred CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 290 GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 290 ~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++.+++-...........++++++.
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECC
Confidence 55555553322111012467888775
No 74
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.72 E-value=3.3 Score=44.76 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=69.0
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCc-----CeEEEE--
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKV-----NDLHIL-- 108 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~-----ndv~~y-- 108 (650)
.+++|+..+.. ..+.+||..+..-..++.+ +.+...-.++.++++||++......... ..++.+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 48888888664 3489999999877766554 3334444666679999999877433221 144444
Q ss_pred EC------CCC--cEEeeecCCCCCCCCcc-------cEEEEEcCCEEEE-EccccCCCCcccceEEEEecCCCceeecc
Q 006334 109 DL------ESK--EWMRPECRGAPPSPRES-------HTATLVGDDKMVI-FGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 109 D~------~t~--~W~~l~~~~~~P~~R~~-------hs~~~~~~~~Lyv-~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
+. ... .|..+ ..+|..+.. .+-+++.+..|+| +-|.. .-.|.||..+.+|+.+-
T Consensus 146 ~~~~~~~~~~~~w~W~~L---P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSL---PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccCCCcceEEcC---CCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceeecc
Confidence 41 122 46665 233433322 1222232355555 32221 24899999999999753
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.64 E-value=4.2 Score=44.63 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=87.9
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEe
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMR 117 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~ 117 (650)
.-+.+.+|.++.. .+|..|-..+. .+..+.-...|.........+....+++|. ..-+|.||+.+.+-++
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeecccccccc
Confidence 5788899986543 35555655554 222211111233322222223337777775 3458999999998888
Q ss_pred eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEe
Q 006334 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYG 197 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~G 197 (650)
+......+ .+..+...+..++.++++-|.. .-++.+...++.|..-- .++.-....+....+..||+.|
T Consensus 295 ~~~~~g~e-~~~~e~FeVShd~~fia~~G~~-------G~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 295 LKPPYGVE-EKSMERFEVSHDSNFIAIAGNN-------GHIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccCCCCcc-cchhheeEecCCCCeEEEcccC-------ceEEeehhhhhhhhhee---eeccEEeeEEEecCCcEEEEEc
Confidence 74333333 2334444444566777777762 24777777888886311 2222223333334456788888
Q ss_pred ccCCCCccCeEEEEECCCCc
Q 006334 198 GDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 198 G~~~~~~~n~v~~yd~~t~~ 217 (650)
|+ ..||++|+.++.
T Consensus 364 ~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 364 GT------GEVYVWNLRQNS 377 (514)
T ss_pred CC------ceEEEEecCCcc
Confidence 75 489999998874
No 76
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.62 E-value=18 Score=39.44 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=91.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++++|..++....+... +..... .....++ .|++....+ ...++|.+|+.+...+.+...... . .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~~~~~-~~~spDg~~l~~~~~~~---~~~~i~~~d~~~~~~~~l~~~~~~---~--~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PGMNGA-PAFSPDGSKLAVSLSKD---GNPDIYVMDLDGKQLTRLTNGPGI---D--T 281 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CCCccc-eEECCCCCEEEEEECCC---CCccEEEEECCCCCEEECCCCCCC---C--C
Confidence 5799999988876655433 111111 2222344 455443222 135799999998877766322111 1 1
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEEEEeccCCCCccCeEE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLFVYGGDCGDQYHGDID 209 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~ 209 (650)
......+++ |++..... . ...+|++|+.+..+..+...+ ........ -+++.+++..... ....++
T Consensus 282 ~~~~s~dg~~l~~~s~~~---g--~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~ 349 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRG---G--SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIA 349 (417)
T ss_pred CEEECCCCCEEEEEECCC---C--CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEE
Confidence 112223444 44433221 1 237999999888877654211 12222222 2455566555432 234799
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
.+|+.+..+..+.... .........+++.+++.-..+.. ..+++++...
T Consensus 350 ~~d~~~~~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~~--~~l~~~~~~g 398 (417)
T TIGR02800 350 VMDLDGGGERVLTDTG-----LDESPSFAPNGRMILYATTRGGR--GVLGLVSTDG 398 (417)
T ss_pred EEeCCCCCeEEccCCC-----CCCCceECCCCCEEEEEEeCCCc--EEEEEEECCC
Confidence 9999987776665211 11122333355444443332222 3566666544
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.48 E-value=11 Score=38.05 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCC--CCCCCCcceEEEEECCEEEEEcccCCC-cCc--CeEEEEECC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTG--QGPGPRDSHSAILWGHKMIVFGGTNGY-KKV--NDLHILDLE 111 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g--~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~--ndv~~yD~~ 111 (650)
++.+|+... ..+.++|+.+++++.+.... ..+..+..-.++.-+|+||+---.... ... ..+|++++.
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 577877654 24577799999998876541 113334444444457888774322111 112 579999999
Q ss_pred CCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCCCCC--Cccee
Q 006334 112 SKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIPVPR--DSHSS 186 (650)
Q Consensus 112 t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP~~R--~~hs~ 186 (650)
.+...+... -..-..+++..++ .||+.-- ..+.+++|+++... +........++... ....+
T Consensus 124 -~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~ 190 (246)
T PF08450_consen 124 -GKVTVVADG-----LGFPNGIAFSPDGKTLYVADS-------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA 190 (246)
T ss_dssp -SEEEEEEEE-----ESSEEEEEEETTSSEEEEEET-------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred -CeEEEEecC-----cccccceEECCcchheeeccc-------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence 665554211 1223456666665 4666321 23569999986433 43322111222221 12222
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC----CEEEEE
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG----TKVYII 246 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~----~~IyI~ 246 (650)
+--++.||+..-. .+.+++||++......+. .|.. ..+.+.++ ++|||.
T Consensus 191 vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~----~p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 191 VDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE----LPVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE-----SSS--SEEEEEEESTTSSEEEEE
T ss_pred EcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc----CCCC--CEEEEEEECCCCCEEEEE
Confidence 3335789987321 258999999966666665 3322 34444442 467775
No 78
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.41 E-value=21 Score=39.65 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
...+|+.|.....=..+...+. ........-+++.++|..+.. ....+|++|+.+++.+.+. ..+.. ..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~----~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~---~~~g~--~~ 251 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAE----PILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVA---SFRGI--NG 251 (433)
T ss_pred eEEEEEECCCCCCceEeecCCC----ccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEec---cCCCC--cc
Confidence 3468888876443223322211 111112223554444443322 2467999999988876652 11211 11
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iyv~GG~~~~~~~n~v 208 (650)
+.....+++ |++.... ++ ..+++++|+.+.....+... . . ........ +++ |++.....+ ...+
T Consensus 252 ~~~~SpDG~~l~~~~s~-~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~~~~~~~spDG~~l~f~sd~~g---~~~i 318 (433)
T PRK04922 252 APSFSPDGRRLALTLSR-DG----NPEIYVMDLGSRQLTRLTNH---F-G-IDTEPTWAPDGKSIYFTSDRGG---RPQI 318 (433)
T ss_pred CceECCCCCEEEEEEeC-CC----CceEEEEECCCCCeEECccC---C-C-CccceEECCCCCEEEEEECCCC---CceE
Confidence 223333554 4443222 11 24799999988876655411 1 0 11112222 344 444332221 2479
Q ss_pred EEEECCCCcEEEeeecCCCCCcccce-EEEEECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGH-AAINIGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~-s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|.+|+.+.++..+...+ .... .....++ .|++..+ .+. ...++.+|+.++.+..+..
T Consensus 319 y~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~~--~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 319 YRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-SGG--QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred EEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-CCC--ceeEEEEECCCCCeEECCC
Confidence 99999888888776322 1111 2223344 5555433 221 2379999999998887753
No 79
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.09 E-value=12 Score=38.74 Aligned_cols=186 Identities=13% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCcccceEEEEE----C-CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLN----L-DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLE 111 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD----~-~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~ 111 (650)
.++||++.|..+. .++.|. + ..+.+...-.. |.+-.+.+.++++|.+|..-. ..+.+.+||+.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~L---p~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKL---PYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEE---eceeccCCeEEECCcEEEEec-----CCceEEEEECc
Confidence 4789999886543 566553 2 22233332222 556677777888888876432 46899999999
Q ss_pred CCcEE---eeecCCCC---CCCCcc---cEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCC
Q 006334 112 SKEWM---RPECRGAP---PSPRES---HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIP 178 (650)
Q Consensus 112 t~~W~---~l~~~~~~---P~~R~~---hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP 178 (650)
++.-. .++..+.. +-.... .-.+ +.++-|+++=...+.+.. --+-.+|+.+ .+|.. ..+
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~A-vDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFA-VDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEE-EcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEe-----ccC
Confidence 98644 33211111 111111 1222 235778877555332211 1234455543 46763 344
Q ss_pred CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC---CEEEEE
Q 006334 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG---TKVYII 246 (650)
Q Consensus 179 ~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~---~~IyI~ 246 (650)
....+.+.++ -+.||++-..+... ..-.+.||+.+++=..+.. +.+.+-..++++.++ .+||++
T Consensus 170 k~~~~naFmv-CGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 170 KRSAGNAFMV-CGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred chhhcceeeE-eeEEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEE
Confidence 4444444443 45788886654332 3446889999887665542 334444456666654 478888
No 80
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.70 E-value=5.8 Score=41.55 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=85.9
Q ss_pred eEEEEECCEEEEEcccC-------C--C--------cCcCeEEEEECCCCc----EEeeecCCCCCCCCcccEEEEEc--
Q 006334 81 HSAILWGHKMIVFGGTN-------G--Y--------KKVNDLHILDLESKE----WMRPECRGAPPSPRESHTATLVG-- 137 (650)
Q Consensus 81 hsa~~~~~~lyVfGG~~-------~--~--------~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~hs~~~~~-- 137 (650)
.++..+++.|| |||+- + . ..++.+..||.++++ |+. +...+...++-.+-+++
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke---sih~~~~WaGEVSdIlYdP 115 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE---SIHDKTKWAGEVSDILYDP 115 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec---ccCCccccccchhheeeCC
Confidence 34555677776 68862 1 1 236889999998886 654 23334444444444443
Q ss_pred -CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC
Q 006334 138 -DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 138 -~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
++.||+.=+ ++ -..--+|.+|.++..-+.+. .-|.. -.+.+++..+|-+ ..-..-.+.+.+||+.++
T Consensus 116 ~~D~LLlAR~--DG--h~nLGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 116 YEDRLLLARA--DG--HANLGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACFGI--NNFHKGVSGIHCLDLISG 183 (339)
T ss_pred CcCEEEEEec--CC--cceeeeEEEcccCCceeecc---CCCCc---CceEeeeeEEEec--cccccCCceEEEEEccCC
Confidence 477877533 21 12235888898888877766 22222 2233444444433 333345678999999999
Q ss_pred cE--EEeeec----CCCCCcccceEEEEECCEEEEE
Q 006334 217 TW--SRLAII----GSSPGVRAGHAAINIGTKVYII 246 (650)
Q Consensus 217 ~W--~~i~~~----g~~P~~R~~~s~v~~~~~IyI~ 246 (650)
+| +..+.. +.....|....++.+.+++|.|
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 99 443321 1112234455567777776665
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.63 E-value=26 Score=38.97 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=96.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRES 130 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 130 (650)
...+|++|+.+++...+... +. .........++ +|++....++ ..++|.+|+.+++.+.+... .. ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~---~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~--~~ 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASF---RG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG--ID 294 (433)
T ss_pred CcEEEEEECCCCCEEEeccC---CC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC--Cc
Confidence 35799999988877666433 11 11122222344 4544332222 25899999999887665211 11 11
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeE
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v 208 (650)
.......+++.+++..... . ..++|.+|+.+.++..+...+ .+....... ++.|++..+. +. ...+
T Consensus 295 ~~~~~spDG~~l~f~sd~~--g--~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~--~~~I 362 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRG--G--RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GG--QYRI 362 (433)
T ss_pred cceEECCCCCEEEEEECCC--C--CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CC--ceeE
Confidence 1223334555444432211 1 247999999888887665221 222222222 3455554442 21 2378
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.+|+.+..+..+... . .........+++.+++..... ....+|.+++....
T Consensus 363 ~v~d~~~g~~~~Lt~~---~--~~~~p~~spdG~~i~~~s~~~--g~~~L~~~~~~g~~ 414 (433)
T PRK04922 363 AVMDLSTGSVRTLTPG---S--LDESPSFAPNGSMVLYATREG--GRGVLAAVSTDGRV 414 (433)
T ss_pred EEEECCCCCeEECCCC---C--CCCCceECCCCCEEEEEEecC--CceEEEEEECCCCc
Confidence 9999988888766521 1 111123344555555543332 23568888886543
No 82
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.37 E-value=8.9 Score=42.10 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=103.2
Q ss_pred EEEEEccCCCCcc------cceEEEEECCCCcEEEeecCCCCCCCCc-ceEEEE-ECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 39 AVYIFGGCCGGLH------FGDVLMLNLDTMVWSTLATTGQGPGPRD-SHSAIL-WGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 39 ~IyvfGG~~~~~~------~~dv~~yD~~t~sW~~l~~~g~~P~pR~-~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
..+++........ ...+|++...+..-........ +.... ...+.. .+++.+++.-..+.. .+++|.+|.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~ 259 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDL 259 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEEC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEec
Confidence 4555555444322 6678888887765431111111 12222 323332 344433333332222 589999999
Q ss_pred CCC-----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc---eee-ccccCCCCCCC
Q 006334 111 ESK-----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR---WAS-PAVKGDIPVPR 181 (650)
Q Consensus 111 ~t~-----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~---Wt~-i~~~~~lP~~R 181 (650)
... .|..+.. ...-....+... ++.+|+.-..+ .....+..+++.+.. |.. +. +-....
T Consensus 260 ~~~~~~~~~~~~l~~----~~~~~~~~v~~~-~~~~yi~Tn~~----a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~ 327 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSP----REDGVEYYVDHH-GDRLYILTNDD----APNGRLVAVDLADPSPAEWWTVLI---PEDEDV 327 (414)
T ss_dssp CCTTTSS-SEEEEEE----SSSS-EEEEEEE-TTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE-----SSSE
T ss_pred cccCCCcCCcEEEeC----CCCceEEEEEcc-CCEEEEeeCCC----CCCcEEEEecccccccccceeEEc---CCCCce
Confidence 875 7888722 111112222223 68888876532 234568888887654 663 22 111111
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE---CCEE-EEEeccCCCcccCe
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI---GTKV-YIIGGVGDKHYYND 257 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~---~~~I-yI~GG~~~~~~~~d 257 (650)
.--.+...++.|++.-=. .....+.+||+. ..|..... ++|.. ........ .+.+ |.+.+. .....
T Consensus 328 ~l~~~~~~~~~Lvl~~~~---~~~~~l~v~~~~-~~~~~~~~--~~p~~-g~v~~~~~~~~~~~~~~~~ss~---~~P~~ 397 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRE---NGSSRLRVYDLD-DGKESREI--PLPEA-GSVSGVSGDFDSDELRFSYSSF---TTPPT 397 (414)
T ss_dssp EEEEEEEETTEEEEEEEE---TTEEEEEEEETT--TEEEEEE--ESSSS-SEEEEEES-TT-SEEEEEEEET---TEEEE
T ss_pred eEEEEEEECCEEEEEEEE---CCccEEEEEECC-CCcEEeee--cCCcc-eEEeccCCCCCCCEEEEEEeCC---CCCCE
Confidence 122333456777776432 234688999988 23333332 12221 11112221 2344 444443 33458
Q ss_pred EEEEECCCCcEEEee
Q 006334 258 IWILNVSTCSWSQLD 272 (650)
Q Consensus 258 v~~yD~~t~~W~~l~ 272 (650)
+|.||+.+++.+.+.
T Consensus 398 ~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 398 VYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEETTTTCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 999999999988775
No 83
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.93 E-value=30 Score=38.47 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=115.7
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEee
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRP 118 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l 118 (650)
-+|+.-..+ ..+..++|+.|.....=..+.... .........-+++.++|-.... ....+|.+|+.+.+-+.+
T Consensus 166 iayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~----~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l 238 (429)
T PRK03629 166 IAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQV 238 (429)
T ss_pred EEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCC----CceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEc
Confidence 345543222 234568999987654333332221 1122223333555444432211 135799999988876665
Q ss_pred ecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEE
Q 006334 119 ECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVY 196 (650)
Q Consensus 119 ~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~ 196 (650)
. ..+ ..........+++ |++.... .. ..++|++|+++.....+.. ... ........ +++.++|
T Consensus 239 ~---~~~--~~~~~~~~SPDG~~La~~~~~-~g----~~~I~~~d~~tg~~~~lt~---~~~--~~~~~~wSPDG~~I~f 303 (429)
T PRK03629 239 A---SFP--RHNGAPAFSPDGSKLAFALSK-TG----SLNLYVMDLASGQIRQVTD---GRS--NNTEPTWFPDSQNLAY 303 (429)
T ss_pred c---CCC--CCcCCeEECCCCCEEEEEEcC-CC----CcEEEEEECCCCCEEEccC---CCC--CcCceEECCCCCEEEE
Confidence 2 111 1112233344554 4443222 11 2369999999887776541 111 11122222 3443444
Q ss_pred eccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCC
Q 006334 197 GGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQ 276 (650)
Q Consensus 197 GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~ 276 (650)
...... ...+|.+|+.+.....+...+ ..........+++.+++.+..+. ..+++.+|++++.+..+....
T Consensus 304 ~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~~~- 374 (429)
T PRK03629 304 TSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTDTF- 374 (429)
T ss_pred EeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCCCC-
Confidence 332211 247999999888777665211 11122223344544444333222 347999999999988876321
Q ss_pred CCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 277 QPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 277 ~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
....-...-+++.+++.+.... ...+++.+++
T Consensus 375 ----~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~ 406 (429)
T PRK03629 375 ----LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTD 406 (429)
T ss_pred ----CCCCceECCCCCEEEEEEcCCC---ceEEEEEECC
Confidence 0011112235666666554211 2345555553
No 84
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.75 E-value=30 Score=38.22 Aligned_cols=245 Identities=11% Similarity=0.098 Sum_probs=118.8
Q ss_pred cCCCeEEeeecCCCCCCCc--ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 006334 10 KRAAMWLYPKVLGFNPPER--WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW- 86 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R--~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~- 86 (650)
..-..|.+....+.....+ .-.++.+.++.+|+.|-. .-++.-+-.-.+|+.+......|.. .+.+...
T Consensus 117 DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~ 188 (398)
T PLN00033 117 DGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATG 188 (398)
T ss_pred CCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCC--ceEEEEEC
Confidence 3446788644322111122 123455667788888643 2344445556889988654222322 2233334
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCC-CCCCC--------------CcccEEEEEcCCEEEEEccccCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRG-APPSP--------------RESHTATLVGDDKMVIFGGSGEGE 151 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~-~~P~~--------------R~~hs~~~~~~~~Lyv~GG~~~~~ 151 (650)
++.+++.|.. ..+++-+-.-.+|+.+.... ..+.. -....+....++.++++|-.+
T Consensus 189 ~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G--- 259 (398)
T PLN00033 189 PKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG--- 259 (398)
T ss_pred CCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc---
Confidence 4567777742 23555554556898751110 00110 111222333455666665442
Q ss_pred CcccceEEEEecCCC-ceeeccccCCCCCCCCcceee-eecCEEEEEeccCCCCccCeEEEEECCCCcE-----EEeeec
Q 006334 152 ANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSN-VIANRLFVYGGDCGDQYHGDIDMLDMNSLTW-----SRLAII 224 (650)
Q Consensus 152 ~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-----~~i~~~ 224 (650)
.+++-+-.-. .|+.+. .+..+...++. ..++.++++|.. ..++.-+.....| .++.
T Consensus 260 -----~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~-- 322 (398)
T PLN00033 260 -----NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEAD-- 322 (398)
T ss_pred -----cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeecc--
Confidence 2443332223 388765 33333333333 335778887642 2344444344434 4443
Q ss_pred CCCCCcccceE-EEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 225 GSSPGVRAGHA-AINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 225 g~~P~~R~~~s-~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
.+..++... +... ++.++++|... -+++-...-++|+........+...+ .+... +++.|+.|-
T Consensus 323 --~~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 323 --IKSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred --cCCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 222233232 3333 45888887642 35555556678999764222222222 44433 478888874
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.64 E-value=25 Score=37.12 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=105.1
Q ss_pred EEEEEccCCCCcccceEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECC-CCc
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDT-MVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLE-SKE 114 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t-~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~-t~~ 114 (650)
++|+..+. .+.+..||..+ .+++.+.... ..-..+.+++. ++ .||+. +.. .+.+..|++. +.+
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~-~~~----~~~i~~~~~~~~g~ 69 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVG-VRP----EFRVLSYRIADDGA 69 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEE-ECC----CCcEEEEEECCCCc
Confidence 46665443 24677888753 5676655431 11122233332 44 46664 332 2557677775 445
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-e-eeccccCCCCCCCCcceeeee-c-
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-W-ASPAVKGDIPVPRDSHSSNVI-A- 190 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-W-t~i~~~~~lP~~R~~hs~v~~-~- 190 (650)
++.+... +.+..-+.++...+++.++...+. .+.+.+||++++. . ..+. .++.....|.++.. +
T Consensus 70 l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 70 LTFAAES---PLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDN 137 (330)
T ss_pred eEEeeee---cCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCC
Confidence 6554321 111111233333455544444432 2457778775431 1 1111 12222233554443 3
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCC-cEEEeee-cCCCCCcccceEEEEEC--CEEEEEeccCCCcccCeEEEEECC--
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAI-IGSSPGVRAGHAAINIG--TKVYIIGGVGDKHYYNDIWILNVS-- 264 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~-~g~~P~~R~~~s~v~~~--~~IyI~GG~~~~~~~~dv~~yD~~-- 264 (650)
+.+|+..- ..+.+.+||+.+. ....... ....+....-+.++... ..+|+.- ...+.+.+||+.
T Consensus 138 ~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~ 207 (330)
T PRK11028 138 RTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDP 207 (330)
T ss_pred CEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCC
Confidence 35665432 2257899998763 2221100 00011111111233333 3677762 224678888876
Q ss_pred CCcEEEeecCCCC----CCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 265 TCSWSQLDTCGQQ----PQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 265 t~~W~~l~~~~~~----p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++++.+...... +.+|+...+.+. ++ .+|+... ..+.+.+++++
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~ 258 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR------TASLISVFSVS 258 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC------CCCeEEEEEEe
Confidence 4565554332112 223433333333 33 4666521 13456666664
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.60 E-value=37 Score=38.98 Aligned_cols=214 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCC--CC---CCCcceEEEEECCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQ--GP---GPRDSHSAILWGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~--~P---~pR~~hsa~~~~~~lyVfGG~~~~~~~nd 104 (650)
+.++.++.||+.... +.++.+|..+. .|+.-..... .+ ........++.+++||+... ...
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DAR 131 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCE
Confidence 445678999985542 35889998765 4875432210 00 01122334667888886322 246
Q ss_pred EEEEECCCCc--EEeeecCCCCCCC-CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCC--
Q 006334 105 LHILDLESKE--WMRPECRGAPPSP-RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDI-- 177 (650)
Q Consensus 105 v~~yD~~t~~--W~~l~~~~~~P~~-R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~l-- 177 (650)
++.+|.++.+ |+.-. ...... ....+-++. ++.||+-....+ ......++.||.++. .|+.-......
T Consensus 132 l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~-~g~Vivg~~~~~--~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~ 206 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVV-KGKVITGISGGE--FGVRGYVTAYDAKTGKLVWRRYTVPGDMGY 206 (527)
T ss_pred EEEEECCCCCEEeeccc--ccccccccccCCcEEE-CCEEEEeecccc--cCCCcEEEEEECCCCceeEeccCcCCCccc
Confidence 9999998875 86531 111111 111222333 577666322111 123457888998876 47643211110
Q ss_pred -----------------CCCCCcce------eeeec---CEEEEEecc----CC------CCccCeEEEEECCCCc--EE
Q 006334 178 -----------------PVPRDSHS------SNVIA---NRLFVYGGD----CG------DQYHGDIDMLDMNSLT--WS 219 (650)
Q Consensus 178 -----------------P~~R~~hs------~v~~~---~~Iyv~GG~----~~------~~~~n~v~~yd~~t~~--W~ 219 (650)
+.....+. ...++ +.||+--|. .. +.+.+++..+|+++.+ |.
T Consensus 207 ~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 207 LDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00011110 11222 567776663 11 2457789999998775 77
Q ss_pred EeeecCCCCC--cccceEEEE--ECC---EEEEEeccCCCcccCeEEEEECCCCc
Q 006334 220 RLAIIGSSPG--VRAGHAAIN--IGT---KVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 220 ~i~~~g~~P~--~R~~~s~v~--~~~---~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
.-.+..+.-. .-....++- .++ ++++.+.- ...+|++|..+.+
T Consensus 287 ~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K-----~G~~~vlDr~tG~ 336 (527)
T TIGR03075 287 YQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR-----NGFFYVLDRTNGK 336 (527)
T ss_pred eeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC-----CceEEEEECCCCc
Confidence 6553221100 001112222 244 36666543 3468888888775
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.50 E-value=34 Score=38.35 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC
Q 006334 101 KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180 (650)
Q Consensus 101 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~ 180 (650)
....++..|.....-+.+-.. .. .........+++.+++.-... . ...+|++|+.+++-..+. ..+.
T Consensus 196 ~~~~l~i~d~dG~~~~~l~~~---~~--~~~~p~wSPDG~~La~~s~~~--g--~~~L~~~dl~tg~~~~lt---~~~g- 262 (448)
T PRK04792 196 YPYQLMIADYDGYNEQMLLRS---PE--PLMSPAWSPDGRKLAYVSFEN--R--KAEIFVQDIYTQVREKVT---SFPG- 262 (448)
T ss_pred CceEEEEEeCCCCCceEeecC---CC--cccCceECCCCCEEEEEEecC--C--CcEEEEEECCCCCeEEec---CCCC-
Confidence 346788888766554443111 11 111222233554444432211 1 257999999887766554 2221
Q ss_pred CCcceeeee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 181 RDSHSSNVI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 181 R~~hs~v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
........ + ..|++....++ ..++|.+|+.+.+.+.+..... .........+++.+++..... ...++
T Consensus 263 -~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~----~~~~p~wSpDG~~I~f~s~~~--g~~~I 332 (448)
T PRK04792 263 -INGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRA----IDTEPSWHPDGKSLIFTSERG--GKPQI 332 (448)
T ss_pred -CcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCC----CccceEECCCCCEEEEEECCC--CCceE
Confidence 11122222 3 44555433222 2579999999998887763211 111112223444333322211 23589
Q ss_pred EEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 259 WILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
|.+|+.+++++.+...+. ......+. +++.+++.+... ...+++++++..
T Consensus 333 y~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~---g~~~I~~~dl~~ 383 (448)
T PRK04792 333 YRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTN---GKFNIARQDLET 383 (448)
T ss_pred EEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEEecC---CceEEEEEECCC
Confidence 999999999988853211 11122222 555444533221 234678888753
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.98 E-value=24 Score=35.76 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=90.4
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC-EEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGH-KMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+|+.++.+ +.+++||+.+++....-.... .++ ++.+ .++ .+|+.++. .+.++.||..+.+..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEE
Confidence 466666643 378899998776433322211 122 2333 244 56676643 246889999887765
Q ss_pred eeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iy 194 (650)
..- . ....+ ...+...++ .+|+.++.+ +.+.+||+.+.+-.. .++.....+.+.. -++.++
T Consensus 67 ~~~-~-~~~~~---~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~~~-----~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 67 GTL-P-SGPDP---ELFALHPNGKILYIANEDD-------NLVTVIDIETRKVLA-----EIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred Eec-c-CCCCc---cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeEEe-----EeeCCCCcceEEECCCCCEE
Confidence 421 1 11111 223333344 455554421 358889987754221 1111111122332 246666
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+++..+. +.+..||..+.+-......+. +..+.....+++.+++++..+ ..+..||+++.+.
T Consensus 130 ~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 130 VNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 6655332 345667877654332111111 112223333455554543322 3688999987654
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=89.88 E-value=35 Score=37.63 Aligned_cols=182 Identities=11% Similarity=0.087 Sum_probs=93.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.+++-..+..... ........-++ +|++..-.++ ..++|++|+.+..++.+.. ... ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g----~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~--~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG----LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HPA--IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC----CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CCC--CcC
Confidence 479999999888777653311 11112222344 4443222111 2689999999998877621 111 111
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eec-CEEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIA-NRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~-~~Iyv~GG~~~~~~~n~v 208 (650)
......+++ |++.... . . ...+|.+|+.+..+..+...+ ....... .-+ +.|++.....+ ...+
T Consensus 291 ~~~~spDg~~i~f~s~~-~--g--~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l 357 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDR-G--G--KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHV 357 (430)
T ss_pred CeEECCCCCEEEEEECC-C--C--CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEE
Confidence 122233444 4443222 1 1 247899999888887664211 1111122 223 44554433221 2469
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+.+|+.+..+..+.... .........+++.+++...... ...++..+...+
T Consensus 358 ~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g--~~~l~~~~~~g~ 408 (430)
T PRK00178 358 AAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQG--RGVLMLVSINGR 408 (430)
T ss_pred EEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecCC--ceEEEEEECCCC
Confidence 99999998887775311 1111233445666666443222 245777777543
No 90
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.75 E-value=17 Score=37.60 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=82.7
Q ss_pred eeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEE-E--eecCCC---CCCC---CcceEEEEECCEEEEEcccCCCc
Q 006334 30 GHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWS-T--LATTGQ---GPGP---RDSHSAILWGHKMIVFGGTNGYK 100 (650)
Q Consensus 30 ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~-~--l~~~g~---~P~p---R~~hsa~~~~~~lyVfGG~~~~~ 100 (650)
|-..++++|.+|. .....+++.+||+.+.+-. . ++..+. .|-. -...-.++.++-|+|+=......
T Consensus 71 GtG~vVYngslYY-----~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYY-----NKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred cCCeEEECCcEEE-----EecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 3344455555555 2335678999999988755 3 322211 1111 11123345567788775544332
Q ss_pred CcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCC
Q 006334 101 KVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGD 176 (650)
Q Consensus 101 ~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~ 176 (650)
..--+-.+|+.+- +|.. ..+.+..+.+.+++ |.||++-..+... ..-.+.||+.+++=..+.. .
T Consensus 146 g~ivvskld~~tL~v~~tw~T-----~~~k~~~~naFmvC--GvLY~~~s~~~~~---~~I~yafDt~t~~~~~~~i--~ 213 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNT-----SYPKRSAGNAFMVC--GVLYATDSYDTRD---TEIFYAFDTYTGKEEDVSI--P 213 (250)
T ss_pred CcEEEEeeCcccCceEEEEEe-----ccCchhhcceeeEe--eEEEEEEECCCCC---cEEEEEEECCCCceeceee--e
Confidence 2223445566553 5654 24555666666665 7899987764322 3345789988776554321 3
Q ss_pred CCCCCCcceeeee---cCEEEEEe
Q 006334 177 IPVPRDSHSSNVI---ANRLFVYG 197 (650)
Q Consensus 177 lP~~R~~hs~v~~---~~~Iyv~G 197 (650)
++.+-..++++.+ +.+||++-
T Consensus 214 f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 214 FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eccccCceEeeeECCCCCeEEEEE
Confidence 3333345555555 46899873
No 91
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.81 E-value=47 Score=37.63 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=41.4
Q ss_pred EEEC-CEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC----cCcCeEE
Q 006334 34 CYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY----KKVNDLH 106 (650)
Q Consensus 34 v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~----~~~ndv~ 106 (650)
++.+ ++||+... ...++.+|..+.+ |+.-......+.-....+.++.++.+|+ |..+.. .....++
T Consensus 106 ~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 106 AYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALR 178 (488)
T ss_pred EEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEE
Confidence 3445 77777432 2478999987654 7754322100000112334555666665 432221 2246789
Q ss_pred EEECCCC--cEEe
Q 006334 107 ILDLESK--EWMR 117 (650)
Q Consensus 107 ~yD~~t~--~W~~ 117 (650)
.||..+. .|+.
T Consensus 179 alD~~TG~~~W~~ 191 (488)
T cd00216 179 AYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCceeeEe
Confidence 9999886 4865
No 92
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.73 E-value=45 Score=36.10 Aligned_cols=201 Identities=24% Similarity=0.324 Sum_probs=100.3
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLE 111 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~ 111 (650)
+..+++||+.-. ...++.+|+.+.+ |...... -...........+++||+ |..++ .+++||..
T Consensus 65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYV-GSWDG-----KLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEE-ecccc-----eEEEEECC
Confidence 667889998611 1279999999877 8654321 001112222333677665 44433 79999996
Q ss_pred CC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC--CceeeccccCCCCCCCCcceee
Q 006334 112 SK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT--MRWASPAVKGDIPVPRDSHSSN 187 (650)
Q Consensus 112 t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t--~~Wt~i~~~~~lP~~R~~hs~v 187 (650)
+. .|..-. .. . .+.. ...++.++.+|+.- + .+.++++|..+ ..|+.-...+ + ..+.....+
T Consensus 130 ~G~~~W~~~~-~~--~-~~~~-~~~v~~~~~v~~~s--~------~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~ 194 (370)
T COG1520 130 TGTLVWSRNV-GG--S-PYYA-SPPVVGDGTVYVGT--D------DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPA 194 (370)
T ss_pred CCcEEEEEec-CC--C-eEEe-cCcEEcCcEEEEec--C------CCeEEEEEccCCcEEEEEecCCc-c-ccccccCce
Confidence 54 587741 11 1 2222 22334355666532 1 24578888774 4687422111 1 222233333
Q ss_pred eecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccce--EEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGH--AAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~--s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
..++.+|+- ... ....++.+|++++ .|+.-... +..+..- ...+....||+-|+.........++++|.
T Consensus 195 ~~~~~vy~~-~~~---~~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 195 IASGTVYVG-SDG---YDGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA 267 (370)
T ss_pred eecceEEEe-cCC---CcceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence 445566654 222 1236899998755 48753211 1111110 12233344555444221222334777877
Q ss_pred CCCc--EEEe
Q 006334 264 STCS--WSQL 271 (650)
Q Consensus 264 ~t~~--W~~l 271 (650)
.+.+ |+.-
T Consensus 268 ~~G~~~W~~~ 277 (370)
T COG1520 268 DTGELIWSFP 277 (370)
T ss_pred CCCceEEEEe
Confidence 7653 7654
No 93
>smart00284 OLF Olfactomedin-like domains.
Probab=87.69 E-value=37 Score=35.12 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=98.1
Q ss_pred CCEEEEEccCCCCcccceEEEEE----CCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLN----LDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD----~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++++|++.+.. ...+.++.|. +....+.+.-.. |.+-.+.+.++++|.+|..-. ..+.+.+||+.+
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~L---p~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPL---PHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTT 103 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEEC---CCccccccEEEECceEEEEec-----CCccEEEEECCC
Confidence 47888887753 2234566663 344444333233 666778888999999998432 247899999999
Q ss_pred CcEE---eeecCC---CCCCCCcc---cEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCCC
Q 006334 113 KEWM---RPECRG---APPSPRES---HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIPV 179 (650)
Q Consensus 113 ~~W~---~l~~~~---~~P~~R~~---hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP~ 179 (650)
++-. .++..+ ..+-...+ .-.+ +.++-|+++=........ --+-.+|+.+ .+|.. ..+.
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlA-vDE~GLWvIYat~~~~g~--ivvSkLnp~tL~ve~tW~T-----~~~k 175 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLA-VDENGLWVIYATEQNAGK--IVISKLNPATLTIENTWIT-----TYNK 175 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEE-EcCCceEEEEeccCCCCC--EEEEeeCcccceEEEEEEc-----CCCc
Confidence 8754 221110 11111111 1122 235667766332121111 1123455543 46764 3444
Q ss_pred CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC---CEEEEE
Q 006334 180 PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG---TKVYII 246 (650)
Q Consensus 180 ~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~---~~IyI~ 246 (650)
...+.+.++ -+.||+.-.. ......-.+.||+.+.+=..+.. +.+.....++++-.+ .+||+.
T Consensus 176 ~sa~naFmv-CGvLY~~~s~-~~~~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 176 RSASNAFMI-CGILYVTRSL-GSKGEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ccccccEEE-eeEEEEEccC-CCCCcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEE
Confidence 444433333 4678887421 11222346889988876443331 234444455565554 478887
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.64 E-value=11 Score=34.29 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=56.9
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC-cCcCeEEEEE-CCC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY-KKVNDLHILD-LES 112 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~ndv~~yD-~~t 112 (650)
.++|.||-..-. .....+-+..||..+.+|+.+..............++.++|+|-++.-.... ...-++|+++ ...
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 467777776654 3344567899999999998876531223345666777788998876544332 2456899994 556
Q ss_pred CcEEeeec
Q 006334 113 KEWMRPEC 120 (650)
Q Consensus 113 ~~W~~l~~ 120 (650)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78998633
No 95
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.63 E-value=29 Score=33.80 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=86.1
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.++++|+. ...+.+||..+..-...... . ...-..+... +++.+++++.+ ..+..||..+.+..
T Consensus 21 ~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~ 86 (289)
T cd00200 21 GKLLATGSG-----DGTIKVWDLETGELLRTLKG---H-TGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEeec-----CcEEEEEEeeCCCcEEEEec---C-CcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccce
Confidence 466666664 24678888776642221111 0 0111122222 45566666652 46888888775332
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec-CEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA-NRLFV 195 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~-~~Iyv 195 (650)
..- . ........+....++.+++.++.+ ..+.+||+.+.+-...- . .....-.++.... +.+++
T Consensus 87 ~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 87 RTL-T---GHTSYVSSVAFSPDGRILSSSSRD-------KTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEE-e---ccCCcEEEEEEcCCCCEEEEecCC-------CeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEE
Confidence 210 0 111122233333345666666632 35888998754433211 0 0111112222333 34444
Q ss_pred EeccCCCCccCeEEEEECCCCcE-EEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTW-SRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W-~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.|..+ +.+..||+.+.+- ..+. . ....-.++... +++.+++++. ...+.+||+.+...
T Consensus 152 ~~~~~-----~~i~i~d~~~~~~~~~~~---~--~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~~~~~ 211 (289)
T cd00200 152 SSSQD-----GTIKLWDLRTGKCVATLT---G--HTGEVNSVAFSPDGEKLLSSSS-----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEcCC-----CcEEEEEccccccceeEe---c--CccccceEEECCCcCEEEEecC-----CCcEEEEECCCCce
Confidence 44323 4688898864432 2222 0 11111223333 3335555554 24688999877543
No 96
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.50 E-value=52 Score=36.59 Aligned_cols=190 Identities=12% Similarity=0.066 Sum_probs=102.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
.++|++|+.++.=+.+... + ..........++ +|++.-..++ ..++|.+|..+..++++... +. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~---~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~---~~--~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS---Q-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNY---PG--IDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEecC---C-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccC---CC--ccC
Confidence 3899999988876666432 1 111122233344 5554433222 46899999999999887211 11 122
Q ss_pred EEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE-EEEEeccCCCC---ccC
Q 006334 132 TATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR-LFVYGGDCGDQ---YHG 206 (650)
Q Consensus 132 s~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~-Iyv~GG~~~~~---~~n 206 (650)
......++ +||+.-.... ..++|++|+++...+.+...+. +.. ...-+++ |.......... ...
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g-----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG-----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred ccEECCCCCEEEEEECCCC-----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCc
Confidence 22333344 5666543321 2579999999988876653221 222 2222444 43333322111 235
Q ss_pred eEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 207 ~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+++.+|+++..+..+... .........-+++.++|-... .....++.+++..+.=..++
T Consensus 350 ~I~v~d~~~g~~~~LT~~-----~~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 350 NLYLISTNSDYIRRLTAN-----GVNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred EEEEEECCCCCeEECCCC-----CCcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEee
Confidence 899999999999888732 122223344455544443222 22346888888766544443
No 97
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.25 E-value=53 Score=36.43 Aligned_cols=190 Identities=8% Similarity=0.011 Sum_probs=93.2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccE
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHT 132 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs 132 (650)
.++|.+|........+..... ........-+++.++|..... ....+|.+|+.+.+=+.+. ..+ ....+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~----~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~---~~~--g~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPE----PIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVA---NFK--GSNSA 244 (427)
T ss_pred cEEEEECCCCCCceEeccCCC----CcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEee---cCC--CCccc
Confidence 467777765544444432211 111222233555555544322 2357999999888655541 111 11122
Q ss_pred EEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EEEEeccCCCCccCeEE
Q 006334 133 ATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LFVYGGDCGDQYHGDID 209 (650)
Q Consensus 133 ~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iyv~GG~~~~~~~n~v~ 209 (650)
.....++ +|++.... +. ..++|.+|........+.. .. .. ....... +++ |++.....+ ...+|
T Consensus 245 ~~~SPDG~~la~~~~~-~g----~~~Iy~~d~~~~~~~~lt~---~~-~~-~~~~~wSpDG~~l~f~s~~~g---~~~Iy 311 (427)
T PRK02889 245 PAWSPDGRTLAVALSR-DG----NSQIYTVNADGSGLRRLTQ---SS-GI-DTEPFFSPDGRSIYFTSDRGG---APQIY 311 (427)
T ss_pred eEECCCCCEEEEEEcc-CC----CceEEEEECCCCCcEECCC---CC-CC-CcCeEEcCCCCEEEEEecCCC---CcEEE
Confidence 3333455 44443332 11 2579999988776665541 11 11 1112222 344 444332211 24789
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
.++..+...+.+...+ ..........+++.+++....+. ...++++|+.+.....+.
T Consensus 312 ~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 312 RMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC--cEEEEEEECCCCCeEEcc
Confidence 9998888777775221 11111223334444434332222 237999999998887765
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.95 E-value=37 Score=34.31 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=71.7
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
..+|+.++. .+.+++||..+.+.......+ ..+ ..+++. + +.+|+.++.+ +.+..||+.+.+-
T Consensus 43 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~ 107 (300)
T TIGR03866 43 KLLYVCASD-----SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV 107 (300)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE
Confidence 356776653 246889999887665422211 111 122222 3 4566655422 4688999987643
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFV 195 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv 195 (650)
... .+.......+....++.+++++..+. +.++.||..+..-......+. +..+....-+++.++
T Consensus 108 ~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~------~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 108 LAE-----IPVGVEPEGMAVSPDGKIVVNTSETT------NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELW 172 (300)
T ss_pred EeE-----eeCCCCcceEEECCCCCEEEEEecCC------CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEE
Confidence 221 11111123444455677777765421 235567876543322110111 111222222444444
Q ss_pred EeccCCCCccCeEEEEECCCCcE
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
+++... +.+..||+.+.+.
T Consensus 173 ~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 173 VSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEcCCC----CEEEEEEcCccee
Confidence 444222 4688999887654
No 99
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.58 E-value=57 Score=36.15 Aligned_cols=206 Identities=11% Similarity=0.068 Sum_probs=99.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++|+.|.....=..+.... .........-+++.+++..... ....+|.+|+.+.+-+.+.. .+. ...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~----~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~---~~g--~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSS----QPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVAS---FRG--HNG 251 (429)
T ss_pred eEEEEEECCCCCCceEeccCC----CccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEec---CCC--ccC
Confidence 357888887654322222211 1122222333555555554432 13568999998877655521 111 112
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCE-EEEEeccCCCCccCeEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANR-LFVYGGDCGDQYHGDID 209 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~-Iyv~GG~~~~~~~n~v~ 209 (650)
......+++.++++...++ ..++|.+|+.+.....+.. .. ........ -+++ |++.....+ ...+|
T Consensus 252 ~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~--~~~~~~~wSpDG~~i~f~s~~~g---~~~I~ 319 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTS---GA--GNNTEPSWSPDGQSILFTSDRSG---SPQVY 319 (429)
T ss_pred ceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeecc---CC--CCcCCEEECCCCCEEEEEECCCC---CceEE
Confidence 2333446655555432121 1358899988777665541 11 11112222 2344 444433222 24778
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
.++.....-..+. . . .+ ......+++.+++.+. +.++.+|+.+..+..+... . . .....+.
T Consensus 320 ~~~~~~~~~~~l~---~--~-~~-~~~~SpDG~~ia~~~~------~~i~~~Dl~~g~~~~lt~~--~---~-~~~~~~s 380 (429)
T PRK01742 320 RMSASGGGASLVG---G--R-GY-SAQISADGKTLVMING------DNVVKQDLTSGSTEVLSST--F---L-DESPSIS 380 (429)
T ss_pred EEECCCCCeEEec---C--C-CC-CccCCCCCCEEEEEcC------CCEEEEECCCCCeEEecCC--C---C-CCCceEC
Confidence 8887665443332 1 1 11 1222334444334332 4688899999998876431 1 1 1122222
Q ss_pred -CCeEEEEcCC
Q 006334 290 -GSDIVIYGGC 299 (650)
Q Consensus 290 -~~~lyV~GG~ 299 (650)
++++++++..
T Consensus 381 PdG~~i~~~s~ 391 (429)
T PRK01742 381 PNGIMIIYSST 391 (429)
T ss_pred CCCCEEEEEEc
Confidence 5667777653
No 100
>PRK13684 Ycf48-like protein; Provisional
Probab=86.58 E-value=50 Score=35.46 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=116.3
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEEC-CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
.......|..... |....-.++.+.+ +..|++|-. ..+++=+-.-.+|+....... ........+.+.
T Consensus 30 ~~~~~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~~~-~~~~~l~~v~~~ 98 (334)
T PRK13684 30 PMLSSSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLDLP-EENFRLISISFK 98 (334)
T ss_pred ccccCCCcEEEec----CCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccCCc-ccccceeeeEEc
Confidence 3344567987653 3333444555555 466766632 345555555678998754211 111222333344
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++..|+.|.. ..+++=+=.-.+|+++......+. .......+.++.+++.|..+ .+++-+-.-.
T Consensus 99 ~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~G--------~i~~S~DgG~ 162 (334)
T PRK13684 99 GDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNVG--------AIYRTTDGGK 162 (334)
T ss_pred CCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeeccc--------eEEEECCCCC
Confidence 5566766532 223332223358998742211222 22234444456677665532 3554444457
Q ss_pred ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE-ECCCCcEEEeeecCCCCCcccceEEEE-ECCEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML-DMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVY 244 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y-d~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~Iy 244 (650)
+|+.+.. +..-..+.+....+..|++.|..+ .++.- |....+|+.+.. +..+.-.+++. .+++++
T Consensus 163 tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~ 229 (334)
T PRK13684 163 NWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLW 229 (334)
T ss_pred CceeCcC----CCcceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEE
Confidence 9997652 112223334444444444444322 33332 344567999862 23344444444 356888
Q ss_pred EEeccCCCcccCeEEEE--ECCCCcEEEeecCCCCCCCcce-eEEEEE-CCeEEEEcC
Q 006334 245 IIGGVGDKHYYNDIWIL--NVSTCSWSQLDTCGQQPQGRFS-HAAVVT-GSDIVIYGG 298 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~y--D~~t~~W~~l~~~~~~p~~R~~-hsav~~-~~~lyV~GG 298 (650)
++|... ..++ +-.-.+|+.+... .....+. +++++. ++.+++.|.
T Consensus 230 ~vg~~G-------~~~~~s~d~G~sW~~~~~~--~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 230 MLARGG-------QIRFNDPDDLESWSKPIIP--EITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred EEecCC-------EEEEccCCCCCccccccCC--ccccccceeeEEEcCCCCEEEEcC
Confidence 886432 1223 1233589976421 1111122 233333 557888775
No 101
>smart00284 OLF Olfactomedin-like domains.
Probab=86.54 E-value=34 Score=35.43 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=77.0
Q ss_pred ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCC------CCC---CCcceEEEEECCEEEEEcccCCC
Q 006334 29 WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQ------GPG---PRDSHSAILWGHKMIVFGGTNGY 99 (650)
Q Consensus 29 ~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~------~P~---pR~~hsa~~~~~~lyVfGG~~~~ 99 (650)
.|-..++++|.+|.-- ...+.+.+||+.+.+-......+. .|- +-...-.++.++-|+|+=.....
T Consensus 75 ~GtG~VVYngslYY~~-----~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 75 QGTGVVVYNGSLYFNK-----FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccccEEEECceEEEEe-----cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 4445566666666622 234689999999987653332210 111 01112234446667665222211
Q ss_pred cCcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC
Q 006334 100 KKVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG 175 (650)
Q Consensus 100 ~~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~ 175 (650)
...--+-++|+.+- +|.. ..+....+.+.+++ +.||++-..... ...-.+.||+.+++=..+. -
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T-----~~~k~sa~naFmvC--GvLY~~~s~~~~---~~~I~yayDt~t~~~~~~~--i 217 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT-----TYNKRSASNAFMIC--GILYVTRSLGSK---GEKVFYAYDTNTGKEGHLD--I 217 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc-----CCCcccccccEEEe--eEEEEEccCCCC---CcEEEEEEECCCCccceee--e
Confidence 11112334566553 5654 34555556666665 689998532211 1234678898876533221 1
Q ss_pred CCCCCCCcceeeee---cCEEEEE
Q 006334 176 DIPVPRDSHSSNVI---ANRLFVY 196 (650)
Q Consensus 176 ~lP~~R~~hs~v~~---~~~Iyv~ 196 (650)
+++.....++++-+ +.+||+.
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeccccccceeceeCCCCCeEEEE
Confidence 23333334455544 4789987
No 102
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.11 E-value=51 Score=35.06 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCeEEeeecCCCCCCCcceeEEEEEC-CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 006334 11 RAAMWLYPKVLGFNPPERWGHSACYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK 89 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P~~R~ghs~v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~ 89 (650)
....|..++..... .-..+.+.+ +.-|++|-. ..+++=+-.-.+|..+......+......++.+.++.
T Consensus 4 ~~~~W~~v~l~t~~----~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~ 73 (302)
T PF14870_consen 4 SGNSWQQVSLPTDK----PLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNE 73 (302)
T ss_dssp SS--EEEEE-S-SS-----EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTE
T ss_pred cCCCcEEeecCCCC----ceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCc
Confidence 45679987754333 344455554 688888753 2455555566789987643222212233455566888
Q ss_pred EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCcee
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWA 169 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt 169 (650)
.||.|-. .-++.-.=.-.+|+++...... +-.......+.++.++++|... .+++-.=.-.+|+
T Consensus 74 g~ivG~~------g~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~ 137 (302)
T PF14870_consen 74 GWIVGEP------GLLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEET------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEE
T ss_pred eEEEcCC------ceEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCee
Confidence 9988742 1233333345689998543222 3334455666678888876542 3555443456899
Q ss_pred eccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEE-EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEe
Q 006334 170 SPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDID-MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIG 247 (650)
Q Consensus 170 ~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~-~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~G 247 (650)
.+.... . -....+... ++++++++- . ..++ ..|+....|..... .-..|.......-++.++++.
T Consensus 138 ~~~~~~---~-gs~~~~~r~~dG~~vavs~-~-----G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 138 AVVSET---S-GSINDITRSSDGRYVAVSS-R-----GNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-S--------EEEEEE-TTS-EEEEET-T-----SSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE
T ss_pred EcccCC---c-ceeEeEEECCCCcEEEEEC-c-----ccEEEEecCCCccceEEcc---CccceehhceecCCCCEEEEe
Confidence 765211 1 111122222 456555553 2 2343 56777788999873 222343333344456777764
Q ss_pred ccCCCcccCeEEEEE--CCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCC
Q 006334 248 GVGDKHYYNDIWILN--VSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCG 300 (650)
Q Consensus 248 G~~~~~~~~dv~~yD--~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~ 300 (650)
..+ .+++=+ -...+|.+-.. +.....++.--+.. ++.+++.||..
T Consensus 205 -~Gg-----~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 205 -RGG-----QIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -TTT-----EEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred -CCc-----EEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 221 344444 33456776321 22334454333333 46799998853
No 103
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.06 E-value=35 Score=33.19 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=84.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+..++.++. ...+++||..+......-.. ....-.++... ++++++.|+.+ ..+..||+.+.+..
T Consensus 63 ~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 128 (289)
T cd00200 63 GTYLASGSS-----DKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCL 128 (289)
T ss_pred CCEEEEEcC-----CCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEE
Confidence 345555554 24688888876532221111 01112223333 34666666522 46888988755433
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFV 195 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv 195 (650)
..- . .....-..+....++.+++.|..+ +.+.+||+.+.+-...- ... ...-.++... ++..++
T Consensus 129 ~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 129 TTL---R-GHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATL---TGH-TGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccceeE---ecC-ccccceEEECCCcCEEE
Confidence 210 0 111112233333334555554422 35888888643321111 000 1111222333 333555
Q ss_pred EeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCC
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+++.+ +.+..||..+......-. .....-.++.... +.+++.++. ...++.||+.+.
T Consensus 194 ~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~i~~~~~~ 251 (289)
T cd00200 194 SSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSE-----DGTIRVWDLRTG 251 (289)
T ss_pred EecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcC-----CCcEEEEEcCCc
Confidence 55542 478899987644332210 1111222333333 455555442 236888888764
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.98 E-value=18 Score=32.91 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=57.1
Q ss_pred eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC-cccCeEEEE-ECCC
Q 006334 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK-HYYNDIWIL-NVST 265 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~-~~~~dv~~y-D~~t 265 (650)
.++|-+|-..-. .....+.+.+||+.+.+|+.+..............++.++++|-++.-.... ...-++|++ |.++
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 456766655443 3344578899999999999988421123446667788889988887543322 234689999 4667
Q ss_pred CcEEEeec
Q 006334 266 CSWSQLDT 273 (650)
Q Consensus 266 ~~W~~l~~ 273 (650)
..|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 88998754
No 105
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.86 E-value=36 Score=35.85 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=69.6
Q ss_pred cccceEEEEECCCCc----EEEeecCCCCCCCCcceEE-EEE---CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC
Q 006334 50 LHFGDVLMLNLDTMV----WSTLATTGQGPGPRDSHSA-ILW---GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR 121 (650)
Q Consensus 50 ~~~~dv~~yD~~t~s----W~~l~~~g~~P~pR~~hsa-~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~ 121 (650)
..++.+..||..+++ |..--.. +..-++=.. .++ +++||+.=+ ++.. --.+|.+|..+..-+++.
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~---~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~-- 147 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHD---KTKWAGEVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLS-- 147 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCC---ccccccchhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeecc--
Confidence 346889999998876 4432222 222222222 222 467776432 2222 246899999999888762
Q ss_pred CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce--eecccc----CCCCCCCCcceeeeecCEEEE
Q 006334 122 GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW--ASPAVK----GDIPVPRDSHSSNVIANRLFV 195 (650)
Q Consensus 122 ~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W--t~i~~~----~~lP~~R~~hs~v~~~~~Iyv 195 (650)
..|.. -.+.+.|..++ |. ..-..-.+.+.+||+.+++| +..+.. +.....|....++...+++|+
T Consensus 148 -~~ps~----KG~~~~D~a~F---~i-~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~fa 218 (339)
T PF09910_consen 148 -SNPSL----KGTLVHDYACF---GI-NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFA 218 (339)
T ss_pred -CCCCc----CceEeeeeEEE---ec-cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEE
Confidence 22322 12233233333 22 11223367899999999999 433211 111222334455555677666
Q ss_pred E
Q 006334 196 Y 196 (650)
Q Consensus 196 ~ 196 (650)
|
T Consensus 219 F 219 (339)
T PF09910_consen 219 F 219 (339)
T ss_pred E
Confidence 5
No 106
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=85.06 E-value=49 Score=33.94 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=68.1
Q ss_pred cEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec-CEEEEEeccCCCCccCeE
Q 006334 131 HTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA-NRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 131 hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v 208 (650)
.++.+. .+|.|+..||- ..+|+.|+++++.+..- .+ ..-+-|+++.-+ +.=++-|+.++ .+
T Consensus 118 Nam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~qilsG~EDG-----tv 180 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANGQILSGAEDG-----TV 180 (325)
T ss_pred ceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCcceeecCCCc-----cE
Confidence 445544 46889998874 25889999999887632 11 234567777644 33444555553 67
Q ss_pred EEEECCCCcEEEe-eecCC--C--CCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 209 DMLDMNSLTWSRL-AIIGS--S--PGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 209 ~~yd~~t~~W~~i-~~~g~--~--P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
.++|..+.+-..+ ...-. + |.--....+...+...+|+||-- .+-.+++...+-+.+
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSSESTCV 242 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCCCceEE
Confidence 7888887765443 22111 1 11122335566666788888742 344555555544443
No 107
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.74 E-value=60 Score=33.96 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=96.0
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
-+-++|+.+...++.+...+. +-.+. ++++. .+.|+..|-..-.+ ++|+.++.-+.. ..|..-.-.
T Consensus 125 aI~R~dpkt~evt~f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vf----paPqG~gpy 192 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEH--ADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVF----PAPQGGGPY 192 (353)
T ss_pred eeEEecCcccceEEeeccccc--CCCcccceeeCCCccEEEeeccccce------ecCcccCceeee----ccCCCCCCc
Confidence 455666666665555432111 11112 22332 36677665322222 556666544332 122223334
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC-Ccceeeee--cCEEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR-DSHSSNVI--ANRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R-~~hs~v~~--~~~Iyv~GG~~~~~~~n~v 208 (650)
.+++..++.+|+.-=. -|-+-++|+.+..=+.++ .|.+. .+.--+.. -+++.+. ......+
T Consensus 193 Gi~atpdGsvwyasla-------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit-----twg~g~l 256 (353)
T COG4257 193 GICATPDGSVWYASLA-------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT-----TWGTGSL 256 (353)
T ss_pred ceEECCCCcEEEEecc-------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe-----ccCCcee
Confidence 5566668888885222 123667777666444333 22221 11111222 2556664 2234689
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
++||+.+..|.+.+..+. .+|....-+-..+++++. .-..+.|.+||+++.+++.++.
T Consensus 257 ~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eEeCcccccceeeeCCCC--CCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 999999999999873221 233333223333566664 2234679999999999998864
No 108
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=82.51 E-value=2.2 Score=31.95 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=24.1
Q ss_pred eeeeeeccc-cceeEEEEEEccEEeeeeeeCCCC
Q 006334 523 VQGKVDGAF-DSGFLMTATINGRIFRGVLFPPGP 555 (650)
Q Consensus 523 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 555 (650)
|.+.=||-= .-.|--|+.++|.+|+|+||--||
T Consensus 17 vs~idd~~~~e~aYQt~V~IgGHvFkGiLyDqG~ 50 (50)
T TIGR01624 17 VTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL 50 (50)
T ss_pred EeccCCCCCceEEEEEEEEECceEEeeEEeccCC
Confidence 444444432 247888999999999999998776
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.99 E-value=27 Score=36.93 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=83.6
Q ss_pred CEEEEEccccCCC--Cccc-ceEEEEecCCC-----ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEE
Q 006334 139 DKMVIFGGSGEGE--ANYL-NDLHVLDLKTM-----RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 139 ~~Lyv~GG~~~~~--~~~~-~dv~~yd~~t~-----~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
..++++|-.-... .... ..+..|++.+. ++..+. .....-.-.+++.+++++++.-| +.++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------CEEEE
Confidence 4666666542111 1122 67889998874 455433 22223334566677888777766 68888
Q ss_pred EECCCCc-EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCe--EEEEECCCCcEEEeecCCCCCCCcceeEEE
Q 006334 211 LDMNSLT-WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYND--IWILNVSTCSWSQLDTCGQQPQGRFSHAAV 287 (650)
Q Consensus 211 yd~~t~~-W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~d--v~~yD~~t~~W~~l~~~~~~p~~R~~hsav 287 (650)
|++...+ |...... ..+-...++.+.++.|++- - .... ++.|+.+..+-..+.. ...++.-.++.
T Consensus 112 ~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~vg-D-----~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~ 179 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILVG-D-----AMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAE 179 (321)
T ss_dssp EEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEE-E-----SSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEE
T ss_pred EEccCcccchhhhee---cceEEEEEEeccccEEEEE-E-----cccCEEEEEEEccCCEEEEEEe---cCCCccEEEEE
Confidence 8888887 8887743 2333556666777755544 2 2333 4566776666777664 34456666666
Q ss_pred EE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 288 VT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 288 ~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++ ++. .++++-. ...++.+...
T Consensus 180 ~l~d~~-~~i~~D~-----~gnl~~l~~~ 202 (321)
T PF03178_consen 180 FLVDED-TIIVGDK-----DGNLFVLRYN 202 (321)
T ss_dssp EE-SSS-EEEEEET-----TSEEEEEEE-
T ss_pred EecCCc-EEEEEcC-----CCeEEEEEEC
Confidence 66 655 4444422 2456666654
No 110
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.85 E-value=79 Score=33.92 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=112.9
Q ss_pred EEccCCCCcccceE--EEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCcCcCeEEEE--ECCCCcE
Q 006334 42 IFGGCCGGLHFGDV--LMLNLDTMVWSTLATTGQGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVNDLHIL--DLESKEW 115 (650)
Q Consensus 42 vfGG~~~~~~~~dv--~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~ndv~~y--D~~t~~W 115 (650)
++|++.. .....+ +.||..+.+++.+........| .-+++ .++.||+..... .....+..| +..+.+.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~~~~P---s~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAEGENP---SWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEESSSE---CCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEE
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecCCCCC---ceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCccee
Confidence 3455543 222344 5556789999887643111111 12233 356788875543 122344444 4444677
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeecc------ccCCC---CCCCCcce
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPA------VKGDI---PVPRDSHS 185 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~------~~~~l---P~~R~~hs 185 (650)
+.+..... ....-+| .++..+++.+++.-+. -..+.+|++..+ .-.... ..++. ...-.-|.
T Consensus 77 ~~~~~~~~-~g~~p~~-i~~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 77 TLLNSVPS-GGSSPCH-IAVDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEE-SSSCEEE-EEECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred EEeeeecc-CCCCcEE-EEEecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 77632211 1112233 2222344444433332 235777777653 222110 01111 12233455
Q ss_pred eeee--cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEE
Q 006334 186 SNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 186 ~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~ 260 (650)
+... ++.+|+..= -.+.++.|+.+... ..........+..--.|.+..-+ ..+||..- ..+.+.+
T Consensus 149 v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e-----~s~~v~v 218 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE-----LSNTVSV 218 (345)
T ss_dssp EEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET-----TTTEEEE
T ss_pred EEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC-----CCCcEEE
Confidence 5555 245776531 13678888887665 65543321122212223333333 47889854 3455666
Q ss_pred EECC--CCcEEEeecCCCCC---CCc-ceeEEEEE-C-CeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 261 LNVS--TCSWSQLDTCGQQP---QGR-FSHAAVVT-G-SDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 261 yD~~--t~~W~~l~~~~~~p---~~R-~~hsav~~-~-~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
|++. +..|+.+......| ... ..+..++. + ..|||.-- ..+.+.+|+++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI~vf~~d 275 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSISVFDLD 275 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEEEEEEEC
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEEEEEEEe
Confidence 6665 67777765432222 222 33334444 3 35777622 14677788874
No 111
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.42 E-value=94 Score=34.53 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=96.0
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE-EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK-MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~-lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.+++-..+... +. ........-+++ |++.....+ ..++|.+|+.+.+.+++... .. ...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~---~~-~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~---~~--~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF---PR-HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---RS--NNT 290 (429)
T ss_pred cEEEEEECCCCCeEEccCC---CC-CcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCC---CC--CcC
Confidence 5789999988776665433 11 111222233554 544332221 24699999999888776211 11 112
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
......+++.+++..... . ...+|.+|+.+.....+...+ .........-+++.+++.+.... ...++.+
T Consensus 291 ~~~wSPDG~~I~f~s~~~--g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~ 360 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQA--G--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--QQHIAKQ 360 (429)
T ss_pred ceEECCCCCEEEEEeCCC--C--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--CceEEEE
Confidence 223334555444433211 1 247889998877666553111 11111111224444444332222 2478999
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
|+.+..+..+.... ........-+++.+++.+.... ...++..++....=..+
T Consensus 361 dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 361 DLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred ECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 99999988776211 1112233456677777655432 23566667654443333
No 112
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.29 E-value=79 Score=33.60 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=105.3
Q ss_pred cCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC
Q 006334 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGH 88 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~ 88 (650)
.--..|.........+....-.++.+.++..||.|-. .-+++-.-.-.+|++++.... .|-..+.+.. -++
T Consensus 44 DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~ 115 (302)
T PF14870_consen 44 DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSK--LPGSPFGITALGDG 115 (302)
T ss_dssp STTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETT
T ss_pred CCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCC
Confidence 3345788765443333223334555678889988742 235555556788999864322 2333344444 466
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
.++++|.. ..+|+=.=.-.+|+.+... .......+....++.+++++-.+. -....|+-...|
T Consensus 116 ~~~l~~~~------G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G~-------~~~s~~~G~~~w 178 (302)
T PF14870_consen 116 SAELAGDR------GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRGN-------FYSSWDPGQTTW 178 (302)
T ss_dssp EEEEEETT--------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS-------EEEEE-TT-SS-
T ss_pred cEEEEcCC------CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECccc-------EEEEecCCCccc
Confidence 77777643 2344444455689987321 112233334445678777765531 123456666779
Q ss_pred eeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEE--CCCCcEEEeeecCCCCCcccceE-EEEE-CCEE
Q 006334 169 ASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLD--MNSLTWSRLAIIGSSPGVRAGHA-AINI-GTKV 243 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd--~~t~~W~~i~~~g~~P~~R~~~s-~v~~-~~~I 243 (650)
.... .+..|.--++... ++.++++. .. ..+..=+ ....+|.+... +.....++.. ++.. ++.+
T Consensus 179 ~~~~----r~~~~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 179 QPHN----RNSSRRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEEE------SSS-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-E
T ss_pred eEEc----cCccceehhceecCCCCEEEEe-CC-----cEEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCE
Confidence 8755 2233333344333 45666654 11 1333333 33456777331 2223334333 3333 3689
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
++.||.. .+++=.-.-++|++.......| -.....++. .++-+|+|-
T Consensus 247 wa~gg~G------~l~~S~DgGktW~~~~~~~~~~--~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 247 WAVGGSG------TLLVSTDGGKTWQKDRVGENVP--SNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEESTT-------EEEESSTTSS-EE-GGGTTSS--S---EEEEEETTEEEEE-S
T ss_pred EEEeCCc------cEEEeCCCCccceECccccCCC--CceEEEEEcCCCceEEECC
Confidence 9998853 3444445567899987532223 223344444 568899875
No 113
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.01 E-value=1.5e+02 Score=35.86 Aligned_cols=140 Identities=6% Similarity=0.131 Sum_probs=68.5
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+.+++.|+.++ .+.++|..+.+.... .. . ....-.++... .++.+++.||.+ ..+.+||+.+.
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~-~~-~--H~~~V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTE-MK-E--HEKRVWSIDYSSADPTLLASGSDD-------GSVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEE-ec-C--CCCCEEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 45566666543 577788876643321 01 1 11112233332 246778888763 24778887654
Q ss_pred cee-eccccCCCCCCCCcceeeee---cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEEC
Q 006334 167 RWA-SPAVKGDIPVPRDSHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIG 240 (650)
Q Consensus 167 ~Wt-~i~~~~~lP~~R~~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~ 240 (650)
.-. .+. . .....++.+ ++.+++.|+.+ +.+..||+.+.. ...+.. . . -.-..+...+
T Consensus 609 ~~~~~~~---~----~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~~--h-~--~~V~~v~f~~ 671 (793)
T PLN00181 609 VSIGTIK---T----KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMIG--H-S--KTVSYVRFVD 671 (793)
T ss_pred cEEEEEe---c----CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEecC--C-C--CCEEEEEEeC
Confidence 322 111 0 111122222 36677777755 478899987543 222210 0 0 0111222235
Q ss_pred CEEEEEeccCCCcccCeEEEEECCC
Q 006334 241 TKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 241 ~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..++.|+.++ .+.+||+..
T Consensus 672 ~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CCEEEEEECCC-----EEEEEeCCC
Confidence 56666666432 477777764
No 114
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.51 E-value=93 Score=33.34 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCEEEEEccCCCCcccceEEEE--ECCCCcEEEeecCCCCCCCCc-ceEEEEEC-CEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLML--NLDTMVWSTLATTGQGPGPRD-SHSAILWG-HKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~y--D~~t~sW~~l~~~g~~P~pR~-~hsa~~~~-~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.||+..... .....+..| +..+.+.+.+..... .... .|.+..-+ ..||+. -+. ...+.+|++..
T Consensus 48 ~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~va-ny~----~g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVA-NYG----GGSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEE-ETT----TTEEEEEEECT
T ss_pred CCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEecCCCEEEEE-Ecc----CCeEEEEEccC
Confidence 46888875542 223455555 445467777654411 1222 23222223 455553 222 24577777766
Q ss_pred Cc-EEee------ecCCCC---CCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCCC
Q 006334 113 KE-WMRP------ECRGAP---PSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIPV 179 (650)
Q Consensus 113 ~~-W~~l------~~~~~~---P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP~ 179 (650)
+. -... ...+.. ......|.+....++ .+|+. ..+ .+.+++|+.+... .+..... .+|.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG------~D~v~~~~~~~~~~~l~~~~~~-~~~~ 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLG------ADRVYVYDIDDDTGKLTPVDSI-KVPP 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETT------TTEEEEEEE-TTS-TEEEEEEE-ECST
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecC------CCEEEEEEEeCCCceEEEeecc-cccc
Confidence 42 1111 001111 123445666666554 45553 221 3568899887665 5432211 1221
Q ss_pred CC-Ccceeeee-cCEEEEEeccCCCCccCeEEEEECC--CCcEEEeeecCCCCCc---c-cceEEEEE--CCEEEEEecc
Q 006334 180 PR-DSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAIIGSSPGV---R-AGHAAINI--GTKVYIIGGV 249 (650)
Q Consensus 180 ~R-~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~~g~~P~~---R-~~~s~v~~--~~~IyI~GG~ 249 (650)
.- -.|.+..- +..+|+..-.+ +.+..|+.. +..|+.+......|.. . ..+.++.. +..||+.-
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-- 263 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-- 263 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE--
T ss_pred CCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe--
Confidence 11 12322222 35788886543 566666555 7778777654444322 2 22333333 23677763
Q ss_pred CCCcccCeEEEEEC--CCCcEEEeec
Q 006334 250 GDKHYYNDIWILNV--STCSWSQLDT 273 (650)
Q Consensus 250 ~~~~~~~dv~~yD~--~t~~W~~l~~ 273 (650)
...+.|.+|++ .+.+.+.+..
T Consensus 264 ---r~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 264 ---RGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp ---CTTTEEEEEEECTTTTTEEEEEE
T ss_pred ---ccCCEEEEEEEecCCCceEEEEE
Confidence 22567888887 4456665543
No 115
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.75 E-value=32 Score=38.23 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=73.8
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEE-eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWM-RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
.||+|+..|+..+ .+-+||.++..-. .+... ..|. ...-....++.+++.|+-+ .-+-.+|+.
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah-~apv---~~~~f~~~d~t~l~s~sDd-------~v~k~~d~s 141 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAH-QAPV---HVTKFSPQDNTMLVSGSDD-------KVVKYWDLS 141 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHHHHHHhhc-cCce---eEEEecccCCeEEEecCCC-------ceEEEEEcC
Confidence 4899999998755 5778886653211 11101 1121 1111222467888887742 123445555
Q ss_pred CCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC-cEEEeeecCCCCCcccceEEEEE-C-C
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAIIGSSPGVRAGHAAINI-G-T 241 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~~g~~P~~R~~~s~v~~-~-~ 241 (650)
+..- ..+..+.-- -.-+.++.-.+++|++.|||++ .+-.||..+. .|..--.. ..| .. .++.. . .
T Consensus 142 ~a~v-~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v~elnh-g~p--Ve--~vl~lpsgs 209 (487)
T KOG0310|consen 142 TAYV-QAELSGHTD-YVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRVVELNH-GCP--VE--SVLALPSGS 209 (487)
T ss_pred CcEE-EEEecCCcc-eeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCceeEEecC-CCc--ee--eEEEcCCCC
Confidence 5442 222222111 1112233344789999999986 6778887776 44432111 111 11 12222 2 4
Q ss_pred EEEEEeccCCCcccCeEEEEECCCC
Q 006334 242 KVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 242 ~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
.|..+|| +.+-++|+.++
T Consensus 210 ~iasAgG-------n~vkVWDl~~G 227 (487)
T KOG0310|consen 210 LIASAGG-------NSVKVWDLTTG 227 (487)
T ss_pred EEEEcCC-------CeEEEEEecCC
Confidence 5666666 45666676543
No 116
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=78.51 E-value=39 Score=35.10 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=74.2
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEE
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDID 209 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~ 209 (650)
-.+.....++.||.--|... -+.+.+||+.+++-.... .+|..-++-.++.++++||.+-=.+ +..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f 113 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE-----GTGF 113 (264)
T ss_dssp EEEEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS-----SEEE
T ss_pred CccEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC-----CeEE
Confidence 34445546789998777632 367899999998765433 6776667778888999999986543 4789
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+||..+. +.+.. .+.+..+-.++..+.++|+--| .+.++.+|+++.+
T Consensus 114 ~yd~~tl--~~~~~---~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGT---FPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEE---EE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-S
T ss_pred EEccccc--eEEEE---EecCCcceEEEcCCCEEEEECC------ccceEEECCcccc
Confidence 9998865 33332 2233466777777778888855 4689999998654
No 117
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.47 E-value=1.3e+02 Score=34.50 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=65.3
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCC-----CcccEEEEEcCCEEEEEccccCCCCcc
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSP-----RESHTATLVGDDKMVIFGGSGEGEANY 154 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~-----R~~hs~~~~~~~~Lyv~GG~~~~~~~~ 154 (650)
+-++.++.||+.... ..++.+|..+. .|+.-........+ ....+. ++.+++||+. ..
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~-av~~~~v~v~-t~------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV-ALYDGKVFFG-TL------- 128 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccc-eEECCEEEEE-cC-------
Confidence 345678999985542 36899999886 48753110000000 001122 3335777763 22
Q ss_pred cceEEEEecCCC--ceeeccccCCCCCC-CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEe
Q 006334 155 LNDLHVLDLKTM--RWASPAVKGDIPVP-RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRL 221 (650)
Q Consensus 155 ~~dv~~yd~~t~--~Wt~i~~~~~lP~~-R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i 221 (650)
-..++.+|.++. .|+.-. ...... ....+.++.+++||+-...........++.||.++.+ |..-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 135899999876 476421 111111 1223345667887775332222234578999988765 7643
No 118
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.45 E-value=45 Score=34.67 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=68.1
Q ss_pred ecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 189 IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 189 ~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.++.+|.--|..+. +.+.+||+.+++-.... .+|..-++=.++.++++||.+- -....+++||.++-
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT-----Wk~~~~f~yd~~tl-- 120 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT-----WKEGTGFVYDPNTL-- 120 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE-----SSSSEEEEEETTTT--
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE-----ecCCeEEEEccccc--
Confidence 46789988886553 68899999999866555 5677778888999999999992 22346899999864
Q ss_pred EEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 269 SQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 269 ~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.+.. .+...-|-+++..+..|++--|. +.++.+|..
T Consensus 121 ~~~~~---~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~ 157 (264)
T PF05096_consen 121 KKIGT---FPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPE 157 (264)
T ss_dssp EEEEE---EE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TT
T ss_pred eEEEE---EecCCcceEEEcCCCEEEEECCc-------cceEEECCc
Confidence 44432 23334667788777788888773 455555543
No 119
>PTZ00421 coronin; Provisional
Probab=77.32 E-value=1.4e+02 Score=34.08 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=74.1
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+.+++.||.++ .+.++|+.+.+-... .. .. ...-.++....++.+++.|+.+ ..+.+||+.+.+
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~-l~-~h--~~~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEV-IK-CH--SDQITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEE-Ec-CC--CCceEEEEEECCCCEEEEecCC-------CEEEEEECCCCc
Confidence 45777777543 577888887653221 01 11 1112333444567888888864 357889988764
Q ss_pred eeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEE--CCE
Q 006334 168 WASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINI--GTK 242 (650)
Q Consensus 168 Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~--~~~ 242 (650)
-.. ... .....+. ..++.. ++..++..|.+. ..-..+..||+.+.. ..... ... .....+..+ ++.
T Consensus 202 ~v~-tl~-~H~~~~~-~~~~w~~~~~~ivt~G~s~-s~Dr~VklWDlr~~~~p~~~~~----~d~-~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 202 IVS-SVE-AHASAKS-QRCLWAKRKDLIITLGCSK-SQQRQIMLWDTRKMASPYSTVD----LDQ-SSALFIPFFDEDTN 272 (493)
T ss_pred EEE-EEe-cCCCCcc-eEEEEcCCCCeEEEEecCC-CCCCeEEEEeCCCCCCceeEec----cCC-CCceEEEEEcCCCC
Confidence 221 100 1111111 112222 233444444321 112568888986543 11111 000 111222222 345
Q ss_pred EEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
++++||..+ ..|.+||+.+......
T Consensus 273 ~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 273 LLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 666666432 3588888888765544
No 120
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.94 E-value=1.3e+02 Score=33.23 Aligned_cols=183 Identities=11% Similarity=0.074 Sum_probs=91.2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.+++=..+... +. ........-++ +|++....++ ..++|.+|..+...+++... . .. ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~-~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GI-DT 287 (427)
T ss_pred cEEEEEECCCCCEEEeecC---CC-CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CC-Cc
Confidence 4699999988765555432 11 11122223355 4444333222 36899999988776665211 1 11 11
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
......+++.+++... .. . ...+|.+|..+.....+...+ .+...... -+++.+++....+.. ..+++
T Consensus 288 ~~~wSpDG~~l~f~s~-~~-g--~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~--~~I~v 356 (427)
T PRK02889 288 EPFFSPDGRSIYFTSD-RG-G--APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA--FKLYV 356 (427)
T ss_pred CeEEcCCCCEEEEEec-CC-C--CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc--EEEEE
Confidence 2233445554444322 11 1 246888888777776654211 11112222 234433343322221 37899
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+|+.+.....+.... ........-+++.+++...... ...++.++...
T Consensus 357 ~d~~~g~~~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g--~~~l~~~~~~g 404 (427)
T PRK02889 357 QDLATGQVTALTDTT-----RDESPSFAPNGRYILYATQQGG--RSVLAAVSSDG 404 (427)
T ss_pred EECCCCCeEEccCCC-----CccCceECCCCCEEEEEEecCC--CEEEEEEECCC
Confidence 999988877665211 1112233445666666544332 24577777744
No 121
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.89 E-value=1.5e+02 Score=32.91 Aligned_cols=181 Identities=11% Similarity=0.106 Sum_probs=97.2
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R 181 (650)
.++|++|+.+.+=+.+.. .+ .. ........|+ +|++.-... . ..++|.+|+.+..++.+. ..+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~-~~~~~~SPDG~~la~~~~~~---g--~~~Iy~~dl~~g~~~~LT---~~~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GM-LVVSDVSKDGSKLLLTMAPK---G--QPDIYLYDTNTKTLTQIT---NYPG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-Cc-EEeeEECCCCCEEEEEEccC---C--CcEEEEEECCCCcEEEcc---cCCC--
Confidence 489999998887666521 11 11 1112233344 454443321 1 358999999999888775 2221
Q ss_pred Ccceeee--ecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCE-EEEEeccCCCc---cc
Q 006334 182 DSHSSNV--IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK-VYIIGGVGDKH---YY 255 (650)
Q Consensus 182 ~~hs~v~--~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~-IyI~GG~~~~~---~~ 255 (650)
....... .+.+||+.....+ ...+|++|+.+...+.+...+. ... ....+++ |.......+.. ..
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCC
Confidence 1122222 2346776654322 3589999999998877763221 222 3334444 44433222111 23
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 256 NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+++.+|+++..++.|...+ ....-...-+++.++|-... .....++.++++
T Consensus 349 ~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~ 400 (419)
T PRK04043 349 FNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLN 400 (419)
T ss_pred cEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc---CCcEEEEEEecC
Confidence 68999999999999886521 11111122255544443211 123467777775
No 122
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.35 E-value=1.5e+02 Score=32.73 Aligned_cols=135 Identities=11% Similarity=0.099 Sum_probs=71.0
Q ss_pred CeEEeeecCCCCCCCcceeEEEEE---CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCC-CCCCCC-cceEEEEEC
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYS---HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTG-QGPGPR-DSHSAILWG 87 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~---~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g-~~P~pR-~~hsa~~~~ 87 (650)
..|.+....-.+ .+.-..+.+. .+..|++|-+ .-+..-+-.-.+|....... ..+... ....+.+.+
T Consensus 75 ~~W~q~~~p~~~--~~~L~~V~F~~~d~~~GwAVG~~------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~ 146 (398)
T PLN00033 75 SEWEQVDLPIDP--GVVLLDIAFVPDDPTHGFLLGTR------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKG 146 (398)
T ss_pred CccEEeecCCCC--CCceEEEEeccCCCCEEEEEcCC------CEEEEEcCCCCCceECccCcccccccccceeeeEEEC
Confidence 479976532222 2234445552 3578888763 23555556677899864211 101111 234555567
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+..|++|-. + -++.=+-.-.+|+.+.....+|.. ......+.++.++++|... .+++-+-.-.+
T Consensus 147 ~~g~~vG~~-G-----~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G--------~v~~S~D~G~t 210 (398)
T PLN00033 147 KEGWIIGKP-A-----ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG--------AIYVTSNAGRN 210 (398)
T ss_pred CEEEEEcCc-e-----EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEeccc--------eEEEECCCCCC
Confidence 888888642 1 222222234689987543233333 2334445556788887542 25554444568
Q ss_pred eeec
Q 006334 168 WASP 171 (650)
Q Consensus 168 Wt~i 171 (650)
|+.+
T Consensus 211 W~~~ 214 (398)
T PLN00033 211 WKAA 214 (398)
T ss_pred ceEc
Confidence 9875
No 123
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.05 E-value=1.6e+02 Score=32.89 Aligned_cols=212 Identities=16% Similarity=0.223 Sum_probs=99.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+|+++..|+.. ..+-+||..+..--+.-...+.|..+ --....++.++++|+-+.. +-++|..+.. .
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd~v-----~k~~d~s~a~-v 145 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDDKV-----VKYWDLSTAY-V 145 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCCce-----EEEEEcCCcE-E
Confidence 46777777743 35778884441100000111112211 1123357899999874321 2223333333 2
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
.++..+..-.-|++ .+.-.++.+++-||++. .+-.||.... .|.. +.....|. . .++.+ +..|
T Consensus 146 ~~~l~~htDYVR~g--~~~~~~~hivvtGsYDg-------~vrl~DtR~~~~~v~-elnhg~pV--e--~vl~lpsgs~i 211 (487)
T KOG0310|consen 146 QAELSGHTDYVRCG--DISPANDHIVVTGSYDG-------KVRLWDTRSLTSRVV-ELNHGCPV--E--SVLALPSGSLI 211 (487)
T ss_pred EEEecCCcceeEee--ccccCCCeEEEecCCCc-------eEEEEEeccCCceeE-EecCCCce--e--eEEEcCCCCEE
Confidence 33333322222322 12223678999999952 3667777665 5542 22222221 1 22333 3456
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccce-----EEEEE-CCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGH-----AAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~-----s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
...|| +.+-++|+.++.= ++..+..| ++... +++-++.||.+. .+-+|| +..
T Consensus 212 asAgG-------n~vkVWDl~~G~q--------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~ 269 (487)
T KOG0310|consen 212 ASAGG-------NSVKVWDLTTGGQ--------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTN 269 (487)
T ss_pred EEcCC-------CeEEEEEecCCce--------ehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccc
Confidence 66666 6777777654321 11122212 22222 346667777654 467787 455
Q ss_pred EEEeecCCCCCCCcceeEEEEECCeEEEEcCC
Q 006334 268 WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGC 299 (650)
Q Consensus 268 W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~ 299 (650)
|+.+... ..|.+-.. .++.-++.-+++|..
T Consensus 270 ~Kvv~s~-~~~~pvLs-iavs~dd~t~viGms 299 (487)
T KOG0310|consen 270 YKVVHSW-KYPGPVLS-IAVSPDDQTVVIGMS 299 (487)
T ss_pred eEEEEee-ecccceee-EEecCCCceEEEecc
Confidence 6665432 12222221 122226677777764
No 124
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=66.17 E-value=1.6e+02 Score=29.99 Aligned_cols=228 Identities=14% Similarity=0.201 Sum_probs=104.4
Q ss_pred CCCcEEEeecCCCCC--CCCcceEEEEE--CCEEEEEc--ccCCCcCcC-e-EEEEECC-CCcEEeeec-CCC--CCCCC
Q 006334 61 DTMVWSTLATTGQGP--GPRDSHSAILW--GHKMIVFG--GTNGYKKVN-D-LHILDLE-SKEWMRPEC-RGA--PPSPR 128 (650)
Q Consensus 61 ~t~sW~~l~~~g~~P--~pR~~hsa~~~--~~~lyVfG--G~~~~~~~n-d-v~~yD~~-t~~W~~l~~-~~~--~P~~R 128 (650)
...+|.........+ ..+....+.+. +++|++|- +........ . .+..... ..+|..... ... .....
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 346798854432222 23344444443 78988886 322221111 1 1344444 458988631 111 11111
Q ss_pred cccE-EEEEcCCEEEEEccccCCCCcccceEEEEecC-CCceeeccccCCCCCCCCcceeee-e-cCEEEEEeccCCCCc
Q 006334 129 ESHT-ATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRWASPAVKGDIPVPRDSHSSNV-I-ANRLFVYGGDCGDQY 204 (650)
Q Consensus 129 ~~hs-~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~i~~~~~lP~~R~~hs~v~-~-~~~Iyv~GG~~~~~~ 204 (650)
.... .+...++.+++. .+... .........|..+ -.+|+...... ..........+ . ++.|+++--.....
T Consensus 108 ~~~~~~i~~~~G~l~~~-~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~- 182 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAP-YYHES-GGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND- 182 (275)
T ss_dssp CSEEEEEEECTTEEEEE-EEEES-SCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST-
T ss_pred cceeeeeEecCCCEEEE-Eeecc-ccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC-
Confidence 1122 234447888876 22111 1112334445444 45698765221 11123333332 2 56788775432111
Q ss_pred cCeEEEEECC-CCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcc
Q 006334 205 HGDIDMLDMN-SLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRF 282 (650)
Q Consensus 205 ~n~v~~yd~~-t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~ 282 (650)
...+.+..+ -.+|+..... .+|.+.....++.. +++++++.........-.++.-.-...+|.........+...+
T Consensus 183 -~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~ 260 (275)
T PF13088_consen 183 -DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDS 260 (275)
T ss_dssp -EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCE
T ss_pred -cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcE
Confidence 233444444 4579986532 34555555555554 4588888763222222234443344678987654322222234
Q ss_pred eeEEEE-E-CCeEEE
Q 006334 283 SHAAVV-T-GSDIVI 295 (650)
Q Consensus 283 ~hsav~-~-~~~lyV 295 (650)
++..++ . +++|+|
T Consensus 261 ~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 261 GYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEETTEEEE
T ss_pred ECCeeEEeCCCcCCC
Confidence 444333 3 568876
No 125
>PRK01742 tolB translocation protein TolB; Provisional
Probab=65.36 E-value=2.2e+02 Score=31.45 Aligned_cols=162 Identities=10% Similarity=0.094 Sum_probs=80.2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcc-cCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGG-TNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG-~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|..++.-..+... +. ........-+++.++++. .++ .-++|.+|+.+...+.+... . ....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~---~g-~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~--~~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASF---RG-HNGAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSG---A--GNNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEecC---CC-ccCceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccC---C--CCcC
Confidence 4689999988766555432 11 111222333565555543 222 13699999988877665211 1 1122
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecC-EEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIAN-RLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~-~Iyv~GG~~~~~~~n~v~~ 210 (650)
......+++.+++..... . ...+|.+|.....-..+. . ..+. ....-++ .|++.++ +.++.
T Consensus 296 ~~~wSpDG~~i~f~s~~~--g--~~~I~~~~~~~~~~~~l~---~---~~~~-~~~SpDG~~ia~~~~-------~~i~~ 357 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRS--G--SPQVYRMSASGGGASLVG---G---RGYS-AQISADGKTLVMING-------DNVVK 357 (429)
T ss_pred CEEECCCCCEEEEEECCC--C--CceEEEEECCCCCeEEec---C---CCCC-ccCCCCCCEEEEEcC-------CCEEE
Confidence 233334555444433211 1 136777776554333221 1 1111 1112233 4544433 46788
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEecc
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGV 249 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~ 249 (650)
+|+.+..+..+... . ........-++++++++..
T Consensus 358 ~Dl~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 358 QDLTSGSTEVLSST--F---LDESPSISPNGIMIIYSST 391 (429)
T ss_pred EECCCCCeEEecCC--C---CCCCceECCCCCEEEEEEc
Confidence 99999988876421 1 1112233445677777654
No 126
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=65.30 E-value=1.8e+02 Score=30.28 Aligned_cols=213 Identities=14% Similarity=0.164 Sum_probs=93.7
Q ss_pred EEEEECCEEEEEccCC--CCcccceEEEEE---CCCCcEEEeecCCCCCC-------CCcceEEEEECCEEEEEcccCCC
Q 006334 32 SACYSHGAVYIFGGCC--GGLHFGDVLMLN---LDTMVWSTLATTGQGPG-------PRDSHSAILWGHKMIVFGGTNGY 99 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~--~~~~~~dv~~yD---~~t~sW~~l~~~g~~P~-------pR~~hsa~~~~~~lyVfGG~~~~ 99 (650)
++.+.+++||..=-.- ..........|| +..+.|+...... .|. .-.-|+.+.+++.-|.+|=.+++
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD 157 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGT-IASFTSAGVAVTELHSFATIDDNQFAVGYHNGD 157 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES--TT--------SEEEEEEE-SSS-EEEEEEE-S
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeeccc-ccccccccceeeeeeeeeEecCCceeEEeccCC
Confidence 4567899988765421 122222333444 5677898754321 122 35668888888888888877666
Q ss_pred cCcCeEEEEECCCCcE------EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccc
Q 006334 100 KKVNDLHILDLESKEW------MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAV 173 (650)
Q Consensus 100 ~~~ndv~~yD~~t~~W------~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~ 173 (650)
..-..+=.+-.. +.| ..-.+ ...-.+-+.-.++-.+++.||+.--.. .....=+.+.+-+..-..|+.+..
T Consensus 158 ~sPRe~G~~yfs-~~~~sp~~~vrr~i-~sey~~~AsEPCvkyY~g~LyLtTRgt-~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 158 VSPRELGFLYFS-DAFASPGVFVRRII-PSEYERNASEPCVKYYDGVLYLTTRGT-LPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp SSS-EEEEEEET-TTTT-TT--EEEE---GGG-TTEEEEEEEEETTEEEEEEEES--TTS---EEEEESSTTSS-EEEE-
T ss_pred CCcceeeEEEec-ccccCCcceeeeec-hhhhccccccchhhhhCCEEEEEEcCc-CCCCCcceeeeecccCCchhhccc
Confidence 554443322211 112 11101 111222333344555689999875332 123344567777777788987763
Q ss_pred cCCCCCCCCcceeeeecCEEEEEeccCC----------CCc---cCeEEE-------EECCCCcEEEeeec---CCCCCc
Q 006334 174 KGDIPVPRDSHSSNVIANRLFVYGGDCG----------DQY---HGDIDM-------LDMNSLTWSRLAII---GSSPGV 230 (650)
Q Consensus 174 ~~~lP~~R~~hs~v~~~~~Iyv~GG~~~----------~~~---~n~v~~-------yd~~t~~W~~i~~~---g~~P~~ 230 (650)
... .-....-.+.+++.||+||-... +.+ ....+. +.+++-+|..+... |..-..
T Consensus 235 p~n--vHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNS 312 (367)
T PF12217_consen 235 PNN--VHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNS 312 (367)
T ss_dssp TT-----SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS--
T ss_pred ccc--ccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccc
Confidence 221 11223334567899999987321 111 112222 24556678777641 222222
Q ss_pred ccceE-EEEECCE-EEEEeccC
Q 006334 231 RAGHA-AINIGTK-VYIIGGVG 250 (650)
Q Consensus 231 R~~~s-~v~~~~~-IyI~GG~~ 250 (650)
-.+.. .|+-++- .|||||.+
T Consensus 313 avGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 313 AVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -SEEEEEEEETTEEEEEEEEB-
T ss_pred cccceeEEEECCEEEEEecCcc
Confidence 33333 4444554 48999964
No 127
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=65.21 E-value=1.7e+02 Score=30.12 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=79.0
Q ss_pred CcEEEeecCC--CCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCC
Q 006334 63 MVWSTLATTG--QGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDD 139 (650)
Q Consensus 63 ~sW~~l~~~g--~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~ 139 (650)
..|+...++. ..+.|--..-... -+|.|+..||- ..+|..|+++.+.+..- . -..-|-|+.+.-..+
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~-r---GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY-R---GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE-c---CCcceeeeeeecccC
Confidence 3576655442 2244444433333 46889998873 45788999999887641 1 123455655543223
Q ss_pred EEEEEccccCCCCcccceEEEEecCCCceeec-cccC--CCCCCCCcc--eeeeecCEEEEEeccCCCCccCeEEEEECC
Q 006334 140 KMVIFGGSGEGEANYLNDLHVLDLKTMRWASP-AVKG--DIPVPRDSH--SSNVIANRLFVYGGDCGDQYHGDIDMLDMN 214 (650)
Q Consensus 140 ~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i-~~~~--~lP~~R~~h--s~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~ 214 (650)
.=++-|+.+ ..+-++|.++.+=.++ +... .+..|..+- .+...+....+.||. ..+-.+++.
T Consensus 169 ~qilsG~ED-------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLr 235 (325)
T KOG0649|consen 169 GQILSGAED-------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLR 235 (325)
T ss_pred cceeecCCC-------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEecc
Confidence 345556643 2366778777654432 2111 222222333 344445566666663 234455555
Q ss_pred CCcEEEeeecCCCCCcccceEEEEECCEEEEEe
Q 006334 215 SLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIG 247 (650)
Q Consensus 215 t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~G 247 (650)
+.+=+.+- |.+-..+-+..+++.+++.|
T Consensus 236 sse~t~vf-----pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 236 SSESTCVF-----PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCCceEEE-----ecccceeEeeeecceEEEec
Confidence 54444332 22222343444555555554
No 128
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.16 E-value=1.9e+02 Score=30.46 Aligned_cols=204 Identities=11% Similarity=0.039 Sum_probs=91.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECC-CCcEEEeecCCCCCCC-CcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLD-TMVWSTLATTGQGPGP-RDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~-t~sW~~l~~~g~~P~p-R~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
+..||+.+.. .+.+..|++. ++++..+... +.+ ...+.+...++ .||+.. +. .+.+..||+.++
T Consensus 46 ~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~ 112 (330)
T PRK11028 46 KRHLYVGVRP-----EFRVLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKD 112 (330)
T ss_pred CCEEEEEECC-----CCcEEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCC
Confidence 3467774331 2567777765 4566654432 111 11232233344 455543 22 256777877643
Q ss_pred c--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-eeecc-ccCCCCCCCCcceeeee
Q 006334 114 E--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-WASPA-VKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 114 ~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-Wt~i~-~~~~lP~~R~~hs~v~~ 189 (650)
. .+.+. ..+.....|.+++..+++.+++.... .+.+++||+++.. ..... .....+....-+.++..
T Consensus 113 g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 113 GIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred CCCCCcee---eccCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 1 11221 11222334555555455444444432 2468899987632 21100 00011111111223333
Q ss_pred c--CEEEEEeccCCCCccCeEEEEECC--CCcEEEeeecCCCC----CcccceEEEEE-C-CEEEEEeccCCCcccCeEE
Q 006334 190 A--NRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAIIGSSP----GVRAGHAAINI-G-TKVYIIGGVGDKHYYNDIW 259 (650)
Q Consensus 190 ~--~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~~g~~P----~~R~~~s~v~~-~-~~IyI~GG~~~~~~~~dv~ 259 (650)
. ..+|+.... .+++.+||++ +.+++.+......| .+|....++.. + ..+|+.. ...+.+.
T Consensus 184 pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-----~~~~~I~ 253 (330)
T PRK11028 184 PNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-----RTASLIS 253 (330)
T ss_pred CCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-----CCCCeEE
Confidence 2 467776332 3677777765 44555544322222 23433333332 3 3567752 1234566
Q ss_pred EEECC--CCcEEEee
Q 006334 260 ILNVS--TCSWSQLD 272 (650)
Q Consensus 260 ~yD~~--t~~W~~l~ 272 (650)
+|++. ...++.+.
T Consensus 254 v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 254 VFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEeCCCCeEEEeE
Confidence 66664 34555544
No 129
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=64.66 E-value=1.9e+02 Score=30.44 Aligned_cols=137 Identities=18% Similarity=0.096 Sum_probs=71.9
Q ss_pred CEEEEEccc-CCCc---Cc-CeEEEEECCCC-----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccce
Q 006334 88 HKMIVFGGT-NGYK---KV-NDLHILDLESK-----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 88 ~~lyVfGG~-~~~~---~~-ndv~~yD~~t~-----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~d 157 (650)
..++++|-. .... .. -.++.|+.... +++.+... ...-.-.+++.+ +++|++.-|. .
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~-~~~lv~~~g~---------~ 108 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST---EVKGPVTAICSF-NGRLVVAVGN---------K 108 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEE-TTEEEEEETT---------E
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhh-CCEEEEeecC---------E
Confidence 356666654 2111 12 56889998885 45444211 111223455555 6776665553 4
Q ss_pred EEEEecCCCc-eeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEE
Q 006334 158 LHVLDLKTMR-WASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAA 236 (650)
Q Consensus 158 v~~yd~~t~~-Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~ 236 (650)
+.+|++...+ |.... ....+-...++...++.|++---..+ -.++.|+....+-..++. -..++...++
T Consensus 109 l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~---d~~~~~v~~~ 178 (321)
T PF03178_consen 109 LYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVAR---DYQPRWVTAA 178 (321)
T ss_dssp EEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEE---ESS-BEEEEE
T ss_pred EEEEEccCcccchhhh---eecceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEe---cCCCccEEEE
Confidence 7888888777 76654 33334455566667776665322211 234566776666777663 2345665666
Q ss_pred EEE-CCEEEEEec
Q 006334 237 INI-GTKVYIIGG 248 (650)
Q Consensus 237 v~~-~~~IyI~GG 248 (650)
..+ ++. .++++
T Consensus 179 ~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 179 EFLVDED-TIIVG 190 (321)
T ss_dssp EEE-SSS-EEEEE
T ss_pred EEecCCc-EEEEE
Confidence 665 544 44433
No 130
>PRK10115 protease 2; Provisional
Probab=64.59 E-value=3e+02 Score=32.73 Aligned_cols=211 Identities=7% Similarity=-0.082 Sum_probs=105.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCC-cCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGY-KKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~-~~~ndv~~yD~~t~~ 114 (650)
+++.+.++-...+....++++.|+.++....-.. +..+ ..++.. +++-+++.-.... ....++|++++.+..
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i----~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL----DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc----cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 3455555544444555677778887663211100 1112 333333 5655555555332 345889999999883
Q ss_pred E--EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec--CCCceeeccccCCCCCCCCcceeeeec
Q 006334 115 W--MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL--KTMRWASPAVKGDIPVPRDSHSSNVIA 190 (650)
Q Consensus 115 W--~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~--~t~~Wt~i~~~~~lP~~R~~hs~v~~~ 190 (650)
- +.+-. . +............+++.+++.... ...++++.|+. .+..|..+. ..+. .........+
T Consensus 211 ~~d~lv~~--e-~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~ 279 (686)
T PRK10115 211 SQDELVYE--E-KDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADAEPFVFL---PRRK-DHEYSLDHYQ 279 (686)
T ss_pred hHCeEEEe--e-CCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCCCceEEE---ECCC-CCEEEEEeCC
Confidence 2 22211 1 112223233333244444454432 22357888884 234443222 1111 1112233446
Q ss_pred CEEEEEeccCCCCccCeEEEEECC-CCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMN-SLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~-t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
+.+|+.--.. .....+...++. ..+|+.+-. ....+.--.+...++.|++..-.. ....++++|..++...
T Consensus 280 ~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~~~~l~~~~~~~---g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 280 HRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP---PRENIMLEGFTLFTDWLVVEERQR---GLTSLRQINRKTREVI 351 (686)
T ss_pred CEEEEEEcCC--CCCceEEEecCCCcccCeEEEC---CCCCCEEEEEEEECCEEEEEEEeC---CEEEEEEEcCCCCceE
Confidence 7888876433 223457777776 578988762 211222234444577777764322 2346888887766655
Q ss_pred Eee
Q 006334 270 QLD 272 (650)
Q Consensus 270 ~l~ 272 (650)
.+.
T Consensus 352 ~l~ 354 (686)
T PRK10115 352 GIA 354 (686)
T ss_pred Eec
Confidence 553
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=64.55 E-value=2.1e+02 Score=30.92 Aligned_cols=252 Identities=15% Similarity=0.162 Sum_probs=113.1
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEccc----CCCcCcCeEEEEECCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG-HKMIVFGGT----NGYKKVNDLHILDLES 112 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~----~~~~~~ndv~~yD~~t 112 (650)
.+|||.--....- ...+++||..+++..-+- +....++.+...+ ..+|+..=+ .-....+-+..||..+
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T 76 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT 76 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT
T ss_pred cEEEEECCccccc-cceEEEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc
Confidence 4677765522221 257999999988754443 3344455444434 457765443 1123467788999999
Q ss_pred Cc--EEeeecCCCCCCCCcc-----cEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcc
Q 006334 113 KE--WMRPECRGAPPSPRES-----HTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 113 ~~--W~~l~~~~~~P~~R~~-----hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h 184 (650)
-+ ++.. + |+.+|+. +...+..++ .+||+ - .....++-+.|++.++.-. .++.|-|.+
T Consensus 77 L~~~~EI~-i---P~k~R~~~~~~~~~~~ls~dgk~~~V~-N-----~TPa~SVtVVDl~~~kvv~-----ei~~PGC~~ 141 (342)
T PF06433_consen 77 LSPTGEIE-I---PPKPRAQVVPYKNMFALSADGKFLYVQ-N-----FTPATSVTVVDLAAKKVVG-----EIDTPGCWL 141 (342)
T ss_dssp TEEEEEEE-E---TTS-B--BS--GGGEEE-TTSSEEEEE-E-----ESSSEEEEEEETTTTEEEE-----EEEGTSEEE
T ss_pred CcccceEe-c---CCcchheecccccceEEccCCcEEEEE-c-----cCCCCeEEEEECCCCceee-----eecCCCEEE
Confidence 84 4332 1 1222432 233333344 45554 2 3345788899998887754 233333333
Q ss_pred eeeeecCEEEEEeccCCCCccCeEEEEECC--CCcEEEeee-cCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEE
Q 006334 185 SSNVIANRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAI-IGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 185 s~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~-~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~ 260 (650)
..-.-++.++.++|.. .+..+.++ .+.=..... .-+...+.+.+.+..- ++++|.. .+...+|.
T Consensus 142 iyP~~~~~F~~lC~DG------sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~------Sy~G~v~~ 209 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDG------SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV------SYEGNVYS 209 (342)
T ss_dssp EEEEETTEEEEEETTS------CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE------BTTSEEEE
T ss_pred EEecCCCceEEEecCC------ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE------ecCCEEEE
Confidence 3333345566665521 12222221 111111100 0011223333433332 2333333 33445555
Q ss_pred EECCCCc------EEEeecCC--CCCCCcceeEEEEE--CCeEEEE---cCCCCCCCCCCcEEEEecCCCCCCCc
Q 006334 261 LNVSTCS------WSQLDTCG--QQPQGRFSHAAVVT--GSDIVIY---GGCGEDERPLNELLVLQLGAEHPNYR 322 (650)
Q Consensus 261 yD~~t~~------W~~l~~~~--~~p~~R~~hsav~~--~~~lyV~---GG~~~~~~~~~d~~~l~l~~~~~~~~ 322 (650)
.|+.... |..+.... +...+--+...++. .+.|||+ |+......+..++|++|+....-..+
T Consensus 210 ~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 210 ADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp EEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred EeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 5555443 44332110 01111122233333 5688887 44333444667999999986544333
No 132
>PRK10115 protease 2; Provisional
Probab=63.72 E-value=3.1e+02 Score=32.61 Aligned_cols=217 Identities=8% Similarity=-0.048 Sum_probs=105.0
Q ss_pred eEEEEE-CCEEEEEccCCCC-cccceEEEEECCCCcE--EEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeE
Q 006334 31 HSACYS-HGAVYIFGGCCGG-LHFGDVLMLNLDTMVW--STLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDL 105 (650)
Q Consensus 31 hs~v~~-~~~IyvfGG~~~~-~~~~dv~~yD~~t~sW--~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv 105 (650)
.+++.. ++.-+++.-.... ....++|++++.+..- ..+-.. +.......+... +++.+++...+. ..+.+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~ 249 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASA--TTSEV 249 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECC--ccccE
Confidence 344444 4444444443322 3457899999988732 222221 112233333333 444444444333 33678
Q ss_pred EEEEC--CCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC-CCceeeccccCCCCCCCC
Q 006334 106 HILDL--ESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRWASPAVKGDIPVPRD 182 (650)
Q Consensus 106 ~~yD~--~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~i~~~~~lP~~R~ 182 (650)
+.|+. .+..|..+. .......+ ... ...+.+|+.--.+ .....+...++. ...|+.+. .....+.
T Consensus 250 ~l~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~~~~ly~~tn~~----~~~~~l~~~~~~~~~~~~~l~---~~~~~~~ 317 (686)
T PRK10115 250 LLLDAELADAEPFVFL--PRRKDHEY--SLD-HYQHRFYLRSNRH----GKNFGLYRTRVRDEQQWEELI---PPRENIM 317 (686)
T ss_pred EEEECcCCCCCceEEE--ECCCCCEE--EEE-eCCCEEEEEEcCC----CCCceEEEecCCCcccCeEEE---CCCCCCE
Confidence 88874 334443321 11112221 222 3357888865432 112346677776 57898754 1111111
Q ss_pred cceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE---EC-CEEEEEeccCCCcccCeE
Q 006334 183 SHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN---IG-TKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 183 ~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~---~~-~~IyI~GG~~~~~~~~dv 258 (650)
--.+...++.|++..-..+ ...++++|..+.....+. .+.+.....+.. .+ +.+++. +.......++
T Consensus 318 i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~--~ss~~~P~~~ 388 (686)
T PRK10115 318 LEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA----FDDPAYVTWIAYNPEPETSRLRYG--YSSMTTPDTL 388 (686)
T ss_pred EEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec----CCCCceEeeecccCCCCCceEEEE--EecCCCCCEE
Confidence 1223334677766643322 346888887665555543 112222211111 11 334333 2333445789
Q ss_pred EEEECCCCcEEEeec
Q 006334 259 WILNVSTCSWSQLDT 273 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~ 273 (650)
|.||+.+++|+.+..
T Consensus 389 y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 389 FELDMDTGERRVLKQ 403 (686)
T ss_pred EEEECCCCcEEEEEe
Confidence 999999999988874
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=62.79 E-value=2.5e+02 Score=31.19 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=62.3
Q ss_pred CcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccc
Q 006334 78 RDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLN 156 (650)
Q Consensus 78 R~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~ 156 (650)
...+++++. |+-||..|-.+ ..+-+||+++.. .+ ...|.--.--....+.+|..|+.-+.++ .
T Consensus 348 v~~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~---a~Fpght~~vk~i~FsENGY~Lat~add------~ 411 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NV---AKFPGHTGPVKAISFSENGYWLATAADD------G 411 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--cc---ccCCCCCCceeEEEeccCceEEEEEecC------C
Confidence 445566665 56666655332 246677877765 22 2233222222334445566666655533 2
Q ss_pred eEEEEecCCCceeeccccCCCCCCCC-cceeeeec--CEEEEEeccCCCCccCeEEEEECCCCcEEEeee
Q 006334 157 DLHVLDLKTMRWASPAVKGDIPVPRD-SHSSNVIA--NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 157 dv~~yd~~t~~Wt~i~~~~~lP~~R~-~hs~v~~~--~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
.+.+||++..+- .. ..+.+-. ....+.++ +...+++|.+ -.+|.|+-.+..|+++..
T Consensus 412 ~V~lwDLRKl~n--~k---t~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 412 SVKLWDLRKLKN--FK---TIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred eEEEEEehhhcc--cc---eeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeeh
Confidence 388889876541 11 1221111 12222232 5666666632 246667777899999984
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=62.66 E-value=55 Score=37.33 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec--CEEEEEeccCCC
Q 006334 126 SPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA--NRLFVYGGDCGD 202 (650)
Q Consensus 126 ~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~--~~Iyv~GG~~~~ 202 (650)
.|+++.-++...-.+ ||+ ||.+ .++|++|++.+.|-.. +.......-++.++ +.|+++||.+
T Consensus 132 IP~~GRDm~y~~~scDly~-~gsg-------~evYRlNLEqGrfL~P-----~~~~~~~lN~v~in~~hgLla~Gt~~-- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYL-VGSG-------SEVYRLNLEQGRFLNP-----FETDSGELNVVSINEEHGLLACGTED-- 196 (703)
T ss_pred cCcCCccccccCCCccEEE-eecC-------cceEEEEccccccccc-----cccccccceeeeecCccceEEecccC--
Confidence 455566565543333 554 4442 4799999999999752 22221222333333 5688888865
Q ss_pred CccCeEEEEECCCCc
Q 006334 203 QYHGDIDMLDMNSLT 217 (650)
Q Consensus 203 ~~~n~v~~yd~~t~~ 217 (650)
+.|+.+|+.+..
T Consensus 197 ---g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 ---GVVEFWDPRDKS 208 (703)
T ss_pred ---ceEEEecchhhh
Confidence 478888887654
No 135
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=62.16 E-value=2.7e+02 Score=31.35 Aligned_cols=114 Identities=10% Similarity=0.007 Sum_probs=64.2
Q ss_pred CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcE
Q 006334 139 DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 139 ~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
+.-.++|-.+. ..+.+||.++..-..++ -+..+.....+.-+++..+++... -++|.+|+++++-
T Consensus 371 ~e~~vigt~dg------D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr-----~el~vididngnv 435 (668)
T COG4946 371 PEGDVIGTNDG------DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVANDR-----FELWVIDIDNGNV 435 (668)
T ss_pred CcceEEeccCC------ceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcCc-----eEEEEEEecCCCe
Confidence 44667766532 25888998888766654 122333333334456655554422 4789999999988
Q ss_pred EEeeecCCCCCcccce--EEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 219 SRLAIIGSSPGVRAGH--AAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 219 ~~i~~~g~~P~~R~~~--s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+.+.- .|++. ..+.+.+.=++.=+.-.+.+...+..||...++--.+++
T Consensus 436 ~~idk------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 436 RLIDK------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred eEecc------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 87762 12221 112233333333233344555678888888876665553
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=62.10 E-value=3.1e+02 Score=32.04 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=65.3
Q ss_pred EEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCC-CCC-CCcceeeeecCEEEEEeccCCCCccCeEEEEE
Q 006334 135 LVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDI-PVP-RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLD 212 (650)
Q Consensus 135 ~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~l-P~~-R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd 212 (650)
...++++++.- . ...+++.++.++.+..++....+- -.+ .+......+++.|-++++. ..+++||
T Consensus 437 tid~~k~~~~s-~------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~n 503 (691)
T KOG2048|consen 437 TIDKNKLFLVS-K------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYN 503 (691)
T ss_pred EecCceEEEEe-c------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEE
Confidence 34457777764 1 234678888888777665421111 111 1112222346778887753 5799999
Q ss_pred CCCCcEEEeeecCCCCCcccceEEEE---ECCEEEEEeccCCCcccCeEEEEECCCC---cEEEeec
Q 006334 213 MNSLTWSRLAIIGSSPGVRAGHAAIN---IGTKVYIIGGVGDKHYYNDIWILNVSTC---SWSQLDT 273 (650)
Q Consensus 213 ~~t~~W~~i~~~g~~P~~R~~~s~v~---~~~~IyI~GG~~~~~~~~dv~~yD~~t~---~W~~l~~ 273 (650)
+++.+-..+... ++ ++.-++.. ..+++.|. ...+.++.||++.. +|.....
T Consensus 504 l~~~~~~~l~~r--ln--~~vTa~~~~~~~~~~lvva------ts~nQv~efdi~~~~l~~ws~~nt 560 (691)
T KOG2048|consen 504 LETLESHLLKVR--LN--IDVTAAAFSPFVRNRLVVA------TSNNQVFEFDIEARNLTRWSKNNT 560 (691)
T ss_pred cccceeecchhc--cC--cceeeeeccccccCcEEEE------ecCCeEEEEecchhhhhhhhhccc
Confidence 999887766521 11 22222222 23567776 44568999999543 4665544
No 137
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=60.39 E-value=2.5e+02 Score=30.33 Aligned_cols=159 Identities=12% Similarity=0.109 Sum_probs=82.6
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC----C
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP----S 126 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P----~ 126 (650)
.+.++.|++..+..+......-.|..=-.|-+.--++ .+|++.-.++ .-++|.||....+.+.++....+| .
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s---tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS---TVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC---EEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 3567778777666555433322232222344443343 4677665433 346788888888888886655555 3
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec--CCCceeeccccC-CCCCCCCcceeeeecCEEEEEeccCCCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL--KTMRWASPAVKG-DIPVPRDSHSSNVIANRLFVYGGDCGDQ 203 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~--~t~~Wt~i~~~~-~lP~~R~~hs~v~~~~~Iyv~GG~~~~~ 203 (650)
.+...+..+..+++++.+--+. .+.+++|.+ .+++-..+.... ....||.. ....-++.|++ -+.+++.
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-~i~~~g~~Lia-a~q~sd~ 314 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRG------HDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-NINPSGRFLIA-ANQKSDN 314 (346)
T ss_pred CCceeEEEECCCCCEEEEecCC------CCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-eeCCCCCEEEE-EccCCCc
Confidence 3444444445565544443332 346766654 444333222111 11224432 22223344444 4444332
Q ss_pred ccCeEEEEECCCCcEEEeee
Q 006334 204 YHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 204 ~~n~v~~yd~~t~~W~~i~~ 223 (650)
-.++.-|.+++.-+.+..
T Consensus 315 --i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 315 --ITVFERDKETGRLTLLGR 332 (346)
T ss_pred --EEEEEEcCCCceEEeccc
Confidence 356777888888888764
No 138
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=59.99 E-value=2.2e+02 Score=31.27 Aligned_cols=141 Identities=9% Similarity=0.054 Sum_probs=71.6
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeec--CCCCCCCC--cccEEEEEc
Q 006334 62 TMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC--RGAPPSPR--ESHTATLVG 137 (650)
Q Consensus 62 t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~--~~~~P~~R--~~hs~~~~~ 137 (650)
.+.|+.+... .-..--++.++|++|+..- .-.++.+|..- .-.++.. ...+.... ...-.+..
T Consensus 189 ~~~Wt~l~~~-----~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs- 255 (373)
T PLN03215 189 GNVLKALKQM-----GYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC- 255 (373)
T ss_pred CCeeeEccCC-----CceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE-
Confidence 4789988632 2334566788999999721 23466666321 1111100 00111111 12223444
Q ss_pred CCEEEEEccccCCCC------------cccceEEEEecCCCceeeccccCCCC--CC-CCcceeee------ecCEEEEE
Q 006334 138 DDKMVIFGGSGEGEA------------NYLNDLHVLDLKTMRWASPAVKGDIP--VP-RDSHSSNV------IANRLFVY 196 (650)
Q Consensus 138 ~~~Lyv~GG~~~~~~------------~~~~dv~~yd~~t~~Wt~i~~~~~lP--~~-R~~hs~v~------~~~~Iyv~ 196 (650)
.++|+++..+..... ...-.++..|.+..+|.++...++.- .. ....++.. .+|+||..
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt 335 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT 335 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE
Confidence 478998877522110 11224566688889999987443211 01 11111111 14778877
Q ss_pred eccCCCCccCeEEEEECCCCcEEEee
Q 006334 197 GGDCGDQYHGDIDMLDMNSLTWSRLA 222 (650)
Q Consensus 197 GG~~~~~~~n~v~~yd~~t~~W~~i~ 222 (650)
.. ...++||++..+=+.+.
T Consensus 336 dd-------~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 336 ED-------TMPKVFKLDNGNGSSIE 354 (373)
T ss_pred CC-------CcceEEECCCCCccceE
Confidence 43 34568888887755554
No 139
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=59.80 E-value=2e+02 Score=29.14 Aligned_cols=225 Identities=17% Similarity=0.265 Sum_probs=105.7
Q ss_pred CCeEEeeecCCCCC--CCcceeEEEEE--CCEEEEEccCC--CCc-ccce-EEEEECC-CCcEEEeecCC-----CCCCC
Q 006334 12 AAMWLYPKVLGFNP--PERWGHSACYS--HGAVYIFGGCC--GGL-HFGD-VLMLNLD-TMVWSTLATTG-----QGPGP 77 (650)
Q Consensus 12 ~~~W~~~~~~g~~P--~~R~ghs~v~~--~~~IyvfGG~~--~~~-~~~d-v~~yD~~-t~sW~~l~~~g-----~~P~p 77 (650)
...|..+......+ ..+.+..+++. ++.|++|-... ... .-.. .+....+ -.+|....... ..+.+
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEEC
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceecc
Confidence 35699877654444 33444444443 78999887322 111 1111 1344444 56898764321 11111
Q ss_pred CcceEEEEECCEEEEEcccCC-CcCcCeEEEEECCC-CcEEeeecCCCCCCCCcccEEE-EEcCCEEEEEccccCCCCcc
Q 006334 78 RDSHSAILWGHKMIVFGGTNG-YKKVNDLHILDLES-KEWMRPECRGAPPSPRESHTAT-LVGDDKMVIFGGSGEGEANY 154 (650)
Q Consensus 78 R~~hsa~~~~~~lyVfGG~~~-~~~~ndv~~yD~~t-~~W~~l~~~~~~P~~R~~hs~~-~~~~~~Lyv~GG~~~~~~~~ 154 (650)
-....+...++++++. .+.. ......+..|.... .+|....... .......... ...++.|+++--.. ...
T Consensus 109 ~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~-- 182 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND-- 182 (275)
T ss_dssp SEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--
T ss_pred ceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--
Confidence 2222244457888876 2211 11233444455554 4698863221 2223344433 34678888876542 111
Q ss_pred cceEEEE-ecC-CCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcc
Q 006334 155 LNDLHVL-DLK-TMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVR 231 (650)
Q Consensus 155 ~~dv~~y-d~~-t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R 231 (650)
.++.+ ..+ -.+|+... ...+|.......++.+ ++.++++.........-.++.-.-...+|..+.....-+...
T Consensus 183 --~~~~~~S~D~G~TWs~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~ 259 (275)
T PF13088_consen 183 --DIYISRSTDGGRTWSPPQ-PTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGD 259 (275)
T ss_dssp --EEEEEEESSTTSS-EEEE-EEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CC
T ss_pred --cEEEEEECCCCCcCCCce-ecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCc
Confidence 33333 333 35798744 1234544444444443 467777766322222222333333477899776432222222
Q ss_pred -cceEEEEE-CCEEEE
Q 006334 232 -AGHAAINI-GTKVYI 245 (650)
Q Consensus 232 -~~~s~v~~-~~~IyI 245 (650)
...+++.. +++|+|
T Consensus 260 ~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 260 SGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred EECCeeEEeCCCcCCC
Confidence 33334444 458886
No 140
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.64 E-value=4.8e+02 Score=32.81 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=82.7
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCC-------CC---CCCcccEEEEEcCC-EEEEEccccCCCCccc
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGA-------PP---SPRESHTATLVGDD-KMVIFGGSGEGEANYL 155 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~-------~P---~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~ 155 (650)
++.|||... ..+.+++||..+.....+...+. .. .-..-..+++..++ .|||.-.. .
T Consensus 694 ~g~LyVad~-----~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n 761 (1057)
T PLN02919 694 NEKVYIAMA-----GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------S 761 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------C
Confidence 578888642 23568999987765543311110 00 00111234444444 58886443 2
Q ss_pred ceEEEEecCCCceeeccccCC-CC--------------CCCCc--ceee-eecCEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 156 NDLHVLDLKTMRWASPAVKGD-IP--------------VPRDS--HSSN-VIANRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 156 ~dv~~yd~~t~~Wt~i~~~~~-lP--------------~~R~~--hs~v-~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
+.+.+||++++....+..... .+ ..... ..++ .-++.+||.-..+ +.+.+||+.+..
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~ 836 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKR 836 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCe
Confidence 569999988765332110000 00 00000 1222 2246788875433 589999999988
Q ss_pred EEEeeecCCC-------CCcc--cceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 218 WSRLAIIGSS-------PGVR--AGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 218 W~~i~~~g~~-------P~~R--~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
...+...+.. .... .-+.+++ -++++||.-. ..+.|.++|+.+++
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt-----~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT-----NNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-----CCCEEEEEECCCCc
Confidence 8877643321 0011 1122233 3468888843 23578999998875
No 141
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=57.10 E-value=2.4e+02 Score=30.91 Aligned_cols=99 Identities=6% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccc--cCCCCCCC--Ccceee
Q 006334 112 SKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAV--KGDIPVPR--DSHSSN 187 (650)
Q Consensus 112 t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~--~~~lP~~R--~~hs~v 187 (650)
.+.|+.++ . . .....-+++.+|++|++.- ...++.++.+- .-+.+.. ...+...+ ...-.|
T Consensus 189 ~~~Wt~l~---~-~--~~~~~DIi~~kGkfYAvD~--------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALK---Q-M--GYHFSDIIVHKGQTYALDS--------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEcc---C-C--CceeeEEEEECCEEEEEcC--------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 48999973 1 2 2223334445899999822 23577776431 1111110 00111111 123355
Q ss_pred eecCEEEEEeccCCC--------------CccCeEEEEECCCCcEEEeeecC
Q 006334 188 VIANRLFVYGGDCGD--------------QYHGDIDMLDMNSLTWSRLAIIG 225 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~--------------~~~n~v~~yd~~t~~W~~i~~~g 225 (650)
...+.++++..+... ...-.|+++|.+..+|.++...+
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 566788888774211 11225677788889999998654
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=56.69 E-value=3.8e+02 Score=31.35 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=64.4
Q ss_pred CCCCCCCcceeee---ecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCC-cccceEEEE-ECCEEEEEeccC
Q 006334 176 DIPVPRDSHSSNV---IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPG-VRAGHAAIN-IGTKVYIIGGVG 250 (650)
Q Consensus 176 ~lP~~R~~hs~v~---~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~-~R~~~s~v~-~~~~IyI~GG~~ 250 (650)
.+|..+...+... .++++++.. ....+++.+++++.+-.++....+.+. +--.+-++. .++.|-++++
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-- 495 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-- 495 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec--
Confidence 5665554444332 357777765 233577888888777776654322211 111122222 3456777754
Q ss_pred CCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE---CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 251 DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT---GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 251 ~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~---~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
...+++|++++.+-..+... ++ ++.-++... .+.|.|.- ..+.++.|++..
T Consensus 496 ----~g~I~v~nl~~~~~~~l~~r--ln--~~vTa~~~~~~~~~~lvvat-------s~nQv~efdi~~ 549 (691)
T KOG2048|consen 496 ----RGQIFVYNLETLESHLLKVR--LN--IDVTAAAFSPFVRNRLVVAT-------SNNQVFEFDIEA 549 (691)
T ss_pred ----cceEEEEEcccceeecchhc--cC--cceeeeeccccccCcEEEEe-------cCCeEEEEecch
Confidence 35799999999988877531 11 322222222 34555551 235777787743
No 143
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=55.82 E-value=3e+02 Score=30.31 Aligned_cols=237 Identities=14% Similarity=0.027 Sum_probs=104.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEE-cccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVF-GGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVf-GG~~~~~~~ndv~~yD~~t~~W 115 (650)
+++-+||++.. .-...+|.+|+.+.+-+.+.... .....+...+.-++.+|.+ .+ ..++..|+.|.+=
T Consensus 46 dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 46 DGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEE 114 (386)
T ss_dssp TS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--E
T ss_pred CCCEEEEEecc--CCCcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcE
Confidence 45666666642 23457899999999988886541 1123333333334565433 33 4788999988765
Q ss_pred EeeecCCCCCCCCcccEEEE-EcCCEEEEEcccc---CC-------------CCcccceEEEEecCCCceeeccccCCCC
Q 006334 116 MRPECRGAPPSPRESHTATL-VGDDKMVIFGGSG---EG-------------EANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~-~~~~~Lyv~GG~~---~~-------------~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
+.+- ..|..-.+....+ ..++.. ++|=.. +. .....+.+...|+.+++.+.+-....
T Consensus 115 ~~vy---~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-- 188 (386)
T PF14583_consen 115 RVVY---EVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-- 188 (386)
T ss_dssp EEEE---E--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--
T ss_pred EEEE---ECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc--
Confidence 4441 2222222222222 222332 222110 00 01235667788888887776431111
Q ss_pred CCCCcceeee-ecCEEEEEeccCC-CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCE-EEEEeccCCCccc
Q 006334 179 VPRDSHSSNV-IANRLFVYGGDCG-DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK-VYIIGGVGDKHYY 255 (650)
Q Consensus 179 ~~R~~hs~v~-~~~~Iyv~GG~~~-~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~-IyI~GG~~~~~~~ 255 (650)
-.+|.... .+..+++|.=... ..+-..+|..|.+......+.. ..+....+|=--..++. |+..+... ...-
T Consensus 189 --wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~-~~~~ 263 (386)
T PF14583_consen 189 --WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTP-GGQD 263 (386)
T ss_dssp ---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEET-TT--
T ss_pred --cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecC-CCCc
Confidence 11222221 2345555532111 1233589999988777666653 23444566666666664 33333322 2222
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCC
Q 006334 256 NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCG 300 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~ 300 (650)
.-+..||+.+..=+.+.. + +.+.|-+...+++++|=-|.+
T Consensus 264 ~~i~~~d~~t~~~~~~~~---~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 264 FWIAGYDPDTGERRRLME---M--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEE-TTT--EEEEEE---E---SEEEEEE-TTSSEEEEEE--
T ss_pred eEEEeeCCCCCCceEEEe---C--CceeeeEEcCCCCEEEecCCC
Confidence 348889999875443422 2 357788888889998886643
No 144
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.23 E-value=3.1e+02 Score=29.87 Aligned_cols=193 Identities=16% Similarity=0.185 Sum_probs=96.1
Q ss_pred cceEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCC
Q 006334 52 FGDVLMLNLDTMVW-STLATTGQGPGPRDSHSAILW---GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSP 127 (650)
Q Consensus 52 ~~dv~~yD~~t~sW-~~l~~~g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 127 (650)
.+.+.++|..+.+- ..++.. ..-|..... +..+||.+ .+ ..+-++|+.+.+-.. ..+..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~------~~~h~~~~~s~Dgr~~yv~~-rd-----g~vsviD~~~~~~v~-----~i~~G 77 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG------GAPHAGLKFSPDGRYLYVAN-RD-----GTVSVIDLATGKVVA-----TIKVG 77 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S------TTEEEEEE-TT-SSEEEEEE-TT-----SEEEEEETTSSSEEE-----EEE-S
T ss_pred CCEEEEEECCCCeEEEEEcCC------CCceeEEEecCCCCEEEEEc-CC-----CeEEEEECCcccEEE-----EEecC
Confidence 46899999988763 334332 112443332 35788875 22 368899999987432 12334
Q ss_pred CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCC----CCCCCcceeeeecCEEEEEeccCCC
Q 006334 128 RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDI----PVPRDSHSSNVIANRLFVYGGDCGD 202 (650)
Q Consensus 128 R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~l----P~~R~~hs~v~~~~~Iyv~GG~~~~ 202 (650)
......++..+++.++.+.+. .+.+.++|.++.+=.. ++ .+.+ +.+|...-.....+..|++--.+
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle~v~~I~-~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-- 148 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLEPVKTIP-TGGMPVDGPESRVAAIVASPGRPEFVVNLKD-- 148 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred CCcceEEEcCCCCEEEEEecC------CCceeEeccccccceeecc-cccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence 445566666677766666653 3568889987654332 22 1111 22232222222345556654333
Q ss_pred CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCC
Q 006334 203 QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQ 279 (650)
Q Consensus 203 ~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~ 279 (650)
...++..|.....=..+. .....++-|-.....+ +.|+.+-. ..+.+-..|.++++-..+-..+..|.
T Consensus 149 --~~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~ 217 (369)
T PF02239_consen 149 --TGEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPH 217 (369)
T ss_dssp --TTEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBE
T ss_pred --CCeEEEEEecccccccee---eecccccccccccCcccceeeeccc----ccceeEEEeeccceEEEEeecccccc
Confidence 357888886654211111 1223455565555543 44444322 23478899998887655433343333
No 145
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=54.98 E-value=2.7e+02 Score=30.38 Aligned_cols=196 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG-HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
.++|..|.....=...... ...++-|-..+.. ++.|+.+ . ...|.+-.+|.++++-..+-..+..|.+....
T Consensus 150 ~~I~vVdy~d~~~~~~~~i---~~g~~~~D~~~dpdgry~~va-~---~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTI---KVGRFPHDGGFDPDGRYFLVA-A---NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp TEEEEEETTTSSCEEEEEE---E--TTEEEEEE-TTSSEEEEE-E---GGGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred CeEEEEEeccccccceeee---cccccccccccCcccceeeec-c---cccceeEEEeeccceEEEEeeccccccccccc
Confidence 4567776554321111111 2356666655553 4444433 2 22468889999888654432223333333222
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEec----CCCceeeccccCCCCCCCCcceeeeecC--EEEEEeccCCCCcc
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDL----KTMRWASPAVKGDIPVPRDSHSSNVIAN--RLFVYGGDCGDQYH 205 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~----~t~~Wt~i~~~~~lP~~R~~hs~v~~~~--~Iyv~GG~~~~~~~ 205 (650)
.+....-+-++..+|.... .-...--|. +...|+.+. .++..-..+.+..+.+ .+|+- ...+.-.
T Consensus 223 ~~php~~g~vw~~~~~~~~----~~~~ig~~~v~v~d~~~wkvv~---~I~~~G~glFi~thP~s~~vwvd--~~~~~~~ 293 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYF----AIPLIGTDPVSVHDDYAWKVVK---TIPTQGGGLFIKTHPDSRYVWVD--TFLNPDA 293 (369)
T ss_dssp EEEETTTEEEEEEEBSSSS----EEEEEE--TTT-STTTBTSEEE---EEE-SSSS--EE--TT-SEEEEE---TT-SSH
T ss_pred cccCCCcceEEeeccccce----ecccccCCccccchhhcCeEEE---EEECCCCcceeecCCCCccEEee--ccCCCCC
Confidence 2222222445656654211 001111222 346788766 4443334444445543 45543 1111126
Q ss_pred CeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 206 GDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 206 n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+.+.++|..+. +.+......+..+..|.-..-+ .++||.-...+. .+.+||.+|.+...
T Consensus 294 ~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~----~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 294 DTVQVIDKKTL--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG----AIVVYDAKTLKEKK 353 (369)
T ss_dssp T-EEEEECCGT--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT----EEEEEETTTTEEEE
T ss_pred ceEEEEECcCc--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC----EEEEEECCCcEEEE
Confidence 78999999888 3333211222223444444433 467776433222 79999998876554
No 146
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.01 E-value=4.5e+02 Score=31.36 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.+++.|+.++ .+-+||..+.-....-.. +-.+++++. ..++.++..-.++. +-.+|+..-+
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~vTFte-----Hts~Vt~v~f~~~g~~llssSLDGt-----VRAwDlkRYr 425 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCFVTFTE-----HTSGVTAVQFTARGNVLLSSSLDGT-----VRAWDLKRYR 425 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEEEEecc-----CCCceEEEEEEecCCEEEEeecCCe-----EEeeeecccc
Confidence 467777777654 467777776543322111 233344332 24555555544443 4444444332
Q ss_pred -EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee
Q 006334 115 -WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS 170 (650)
Q Consensus 115 -W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~ 170 (650)
.+.. ..|.|+...+.++...+.|++.|+.+ .-++++++.+|++--.
T Consensus 426 NfRTf----t~P~p~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 426 NFRTF----TSPEPIQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLLD 472 (893)
T ss_pred eeeee----cCCCceeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeeee
Confidence 3332 34555555555555458899988874 2468888888876654
No 147
>PLN00181 protein SPA1-RELATED; Provisional
Probab=53.41 E-value=4.8e+02 Score=31.46 Aligned_cols=145 Identities=7% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEE-eeecCCCCCCCCcccEEEE-EcCCEEEEEccccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWM-RPECRGAPPSPRESHTATL-VGDDKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~hs~~~-~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
++.+++.||.++ .+.+||+.+..-. .+.. .. ...+... ..++.++++|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~----~~--~v~~v~~~~~~g~~latgs~d-------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTIKT----KA--NICCVQFPSESGRSLAFGSAD-------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEEec----CC--CeEEEEEeCCCCCEEEEEeCC-------CeEEEEECC
Confidence 567777787643 4777887765432 2211 00 0111111 1246777777753 358889986
Q ss_pred CCc--eeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC----cEEEeeecCCCCCcccceEEEE
Q 006334 165 TMR--WASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL----TWSRLAIIGSSPGVRAGHAAIN 238 (650)
Q Consensus 165 t~~--Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~----~W~~i~~~g~~P~~R~~~s~v~ 238 (650)
+.. ...+. .... .-..+...++..++.|+.+ +.+..||+... .|..+...... ..........
T Consensus 649 ~~~~~~~~~~---~h~~--~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s 717 (793)
T PLN00181 649 NPKLPLCTMI---GHSK--TVSYVRFVDSSTLVSSSTD-----NTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLS 717 (793)
T ss_pred CCCccceEec---CCCC--CEEEEEEeCCCEEEEEECC-----CEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEc
Confidence 542 11111 0000 1112222355566666654 35777877542 23333211110 1111122223
Q ss_pred ECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 239 IGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 239 ~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
.++.+++.|+.++ .+.+|+...
T Consensus 718 ~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 718 VSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred CCCCEEEEEeCCC-----EEEEEECCC
Confidence 3456777776543 466666554
No 148
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=50.91 E-value=3.2e+02 Score=28.79 Aligned_cols=182 Identities=14% Similarity=0.017 Sum_probs=96.7
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 55 VLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 55 v~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
+=.+|+.+++-+..+.- ..-.-|.+++ -++..+|.=+. +-+-++|+++..-++.....++...- ..+.
T Consensus 85 iGhLdP~tGev~~ypLg----~Ga~Phgiv~gpdg~~Witd~~------~aI~R~dpkt~evt~f~lp~~~a~~n-let~ 153 (353)
T COG4257 85 IGHLDPATGEVETYPLG----SGASPHGIVVGPDGSAWITDTG------LAIGRLDPKTLEVTRFPLPLEHADAN-LETA 153 (353)
T ss_pred ceecCCCCCceEEEecC----CCCCCceEEECCCCCeeEecCc------ceeEEecCcccceEEeecccccCCCc-ccce
Confidence 44678888877666432 1222344433 25556654321 36889999988776653333333222 2334
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCC-cceeeeecCEEEEEeccCCCCccCeEEEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD-SHSSNVIANRLFVYGGDCGDQYHGDIDMLD 212 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~-~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd 212 (650)
+....+.|+..|-.+.. -++|+.++.-+... .|..-. ...++.-++.+|...= .-|-+-+.|
T Consensus 154 vfD~~G~lWFt~q~G~y--------GrLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyasl-----agnaiarid 216 (353)
T COG4257 154 VFDPWGNLWFTGQIGAY--------GRLDPARNVISVFP----APQGGGPYGICATPDGSVWYASL-----AGNAIARID 216 (353)
T ss_pred eeCCCccEEEeeccccc--------eecCcccCceeeec----cCCCCCCcceEECCCCcEEEEec-----cccceEEcc
Confidence 44456788887654211 15666665544322 222222 2223344677776521 125677788
Q ss_pred CCCCcEEEeeecCCCCCcc-cceEEEEEC--CEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 213 MNSLTWSRLAIIGSSPGVR-AGHAAINIG--TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 213 ~~t~~W~~i~~~g~~P~~R-~~~s~v~~~--~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+.+..=+.+. .|... .+.--+..+ +++++. ......+++||+.+..|...+-
T Consensus 217 p~~~~aev~p----~P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~eypL 271 (353)
T COG4257 217 PFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIEYPL 271 (353)
T ss_pred cccCCcceec----CCCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccceeeeC
Confidence 8777555554 23321 111112222 356655 2234579999999999999864
No 149
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=48.35 E-value=4.4e+02 Score=29.53 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=16.2
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEee
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRP 118 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l 118 (650)
..++++|. ...|+||..++.-+++
T Consensus 101 q~V~i~G~------~~gYrYdgat~~l~~~ 124 (469)
T PF11134_consen 101 QAVAINGK------LKGYRYDGATKTLSNW 124 (469)
T ss_pred eEEEEccc------cceEEEechhhHhhcC
Confidence 34666663 4689999998855444
No 150
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=47.72 E-value=22 Score=33.60 Aligned_cols=35 Identities=29% Similarity=0.641 Sum_probs=27.4
Q ss_pred eeeeeeeccccceeEEEEEEccEEeeeeeeCCCCc
Q 006334 522 EVQGKVDGAFDSGFLMTATINGRIFRGVLFPPGPG 556 (650)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (650)
-|.++=||-=.=.|--||.|.|-+|+|+||-=||.
T Consensus 118 RVssiDdgedE~AYQTaV~IGGHVFKGiLYDqG~~ 152 (154)
T PF05142_consen 118 RVSSIDDGEDEYAYQTAVNIGGHVFKGILYDQGPE 152 (154)
T ss_pred EEecccCcccceeeEEeEEECCEEeeeeeeccCCC
Confidence 34455555555679999999999999999988874
No 151
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.97 E-value=4e+02 Score=28.68 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=96.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC-
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK- 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~- 113 (650)
+++||+-... . .+|+||.. +..|..-... . ++....++..++.+|+.- ..+.++.+|..+.
T Consensus 111 ~G~i~~g~~~-g-----~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~ 174 (370)
T COG1520 111 DGKIYVGSWD-G-----KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGT 174 (370)
T ss_pred CCeEEEeccc-c-----eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCc
Confidence 5776663332 2 79999985 4458765433 1 455555566677777643 2357888888865
Q ss_pred -cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeecc--ccCCCC---CCCCcce
Q 006334 114 -EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPA--VKGDIP---VPRDSHS 185 (650)
Q Consensus 114 -~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~--~~~~lP---~~R~~hs 185 (650)
.|+.-.... ...+.....+ +.++.+|+- ..+ ....++.+|+.++ .|..-. ..+... .+.....
T Consensus 175 ~~W~~~~~~~--~~~~~~~~~~-~~~~~vy~~-~~~-----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~ 245 (370)
T COG1520 175 LKWTYETPAP--LSLSIYGSPA-IASGTVYVG-SDG-----YDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG 245 (370)
T ss_pred EEEEEecCCc--cccccccCce-eecceEEEe-cCC-----CcceEEEEEccCCcEeeeeeeecccCcccccccccccCc
Confidence 587531111 1223222223 435666663 221 1125888888654 577311 011100 1222222
Q ss_pred eeeecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 186 SNVIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 186 ~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
.+.+++.+|... ....++++|..+. .|+.-........+.........++++|+............+++++.
T Consensus 246 ~v~v~~~~~~~~------~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 246 PVYVDGGVYAGS------YGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred eEEECCcEEEEe------cCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEec
Confidence 333333333222 2234888887755 48775420001112222222233667777754333224556777775
No 152
>PTZ00421 coronin; Provisional
Probab=46.66 E-value=4.9e+02 Score=29.64 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=69.5
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEE-
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWM- 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~- 116 (650)
.+++.||.+ ..+.+||+.+..-...-.. . .-.-.++.. .++.+++.|+.++ .+.+||+.+.+-.
T Consensus 139 ~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~-h---~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 139 NVLASAGAD-----MVVNVWDVERGKAVEVIKC-H---SDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVS 204 (493)
T ss_pred CEEEEEeCC-----CEEEEEECCCCeEEEEEcC-C---CCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEE
Confidence 455555543 2577788876643221110 0 011122222 3677777777543 5788998876532
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
.+.. ....+. .......++..++..|.+.. .-..+.+||+.+..... .. ..+... ....+..+ ++.++
T Consensus 205 tl~~---H~~~~~-~~~~w~~~~~~ivt~G~s~s---~Dr~VklWDlr~~~~p~-~~-~~~d~~-~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 205 SVEA---HASAKS-QRCLWAKRKDLIITLGCSKS---QQRQIMLWDTRKMASPY-ST-VDLDQS-SALFIPFFDEDTNLL 274 (493)
T ss_pred EEec---CCCCcc-eEEEEcCCCCeEEEEecCCC---CCCeEEEEeCCCCCCce-eE-eccCCC-CceEEEEEcCCCCEE
Confidence 2211 111111 11222233444555554211 12468888886533111 00 011100 11112222 34555
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEe
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRL 221 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i 221 (650)
+.||..+ ..+..||+.+......
T Consensus 275 ~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 275 YIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEeCC----CeEEEEEeeCCceEEE
Confidence 5565322 4688888877665443
No 153
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=43.66 E-value=4.2e+02 Score=29.62 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=76.1
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCC
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD 182 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~ 182 (650)
..++++|+.+..=..+- . ..+....-....+++-++|-...+ -..++|.+|+.+..-..+. ... .+.
T Consensus 218 ~~i~~~~l~~g~~~~i~---~--~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt---~~~-gi~ 284 (425)
T COG0823 218 PRIYYLDLNTGKRPVIL---N--FNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLT---NGF-GIN 284 (425)
T ss_pred ceEEEEeccCCccceee---c--cCCccCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecc---cCC-ccc
Confidence 34666666665443331 1 111111222233455555544322 2457999999876633332 111 222
Q ss_pred cceee-eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEE
Q 006334 183 SHSSN-VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWIL 261 (650)
Q Consensus 183 ~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~y 261 (650)
.+-.. -.+.+|+......+ ...+++||++...=+.+...+ ....+.....+++.++|=+..... -++..+
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~ 355 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFESSSGGQ--WDIDKN 355 (425)
T ss_pred cCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEeccCCc--eeeEEe
Confidence 22222 22344554433222 348999999988877776321 122244444455444443333222 679999
Q ss_pred ECCCCc-EEEeec
Q 006334 262 NVSTCS-WSQLDT 273 (650)
Q Consensus 262 D~~t~~-W~~l~~ 273 (650)
|+.++. |..+..
T Consensus 356 ~~~~~~~~~~lt~ 368 (425)
T COG0823 356 DLASGGKIRILTS 368 (425)
T ss_pred ccCCCCcEEEccc
Confidence 998877 888875
No 154
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=42.39 E-value=4.2e+02 Score=27.65 Aligned_cols=212 Identities=13% Similarity=0.187 Sum_probs=97.3
Q ss_pred EEEEECCEEEE--Ecc-cCCCcCcCeEEEEECCC-CcEEeeec----CCCCC-CCCcccEEEEEcCCEEEEE-ccccCCC
Q 006334 82 SAILWGHKMIV--FGG-TNGYKKVNDLHILDLES-KEWMRPEC----RGAPP-SPRESHTATLVGDDKMVIF-GGSGEGE 151 (650)
Q Consensus 82 sa~~~~~~lyV--fGG-~~~~~~~ndv~~yD~~t-~~W~~l~~----~~~~P-~~R~~hs~~~~~~~~Lyv~-GG~~~~~ 151 (650)
.+.++++.||. .+| .-+...+.-.|+-.-.. ++|+..+. ...-| ..-.+.++-+++ ++||.+ --++. .
T Consensus 20 KaFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~-NRLfa~iEtR~~-a 97 (367)
T PF12217_consen 20 KAFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVG-NRLFAVIETRTV-A 97 (367)
T ss_dssp --EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEET-TEEEEEEEEEET-T
T ss_pred cceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeec-ceeeEEEeehhh-h
Confidence 34567777763 233 33444455556555543 46875422 11112 233456677775 777754 33322 2
Q ss_pred CcccceEEEEec---CCCceeeccccCCCCC-------CCCcceeeeecCEEEEEeccCCCCccCeEEEEE-CC------
Q 006334 152 ANYLNDLHVLDL---KTMRWASPAVKGDIPV-------PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLD-MN------ 214 (650)
Q Consensus 152 ~~~~~dv~~yd~---~t~~Wt~i~~~~~lP~-------~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd-~~------ 214 (650)
++.+...+.|+- ....|..-+ .+.+|. ...-|+.+.+++.-|++|=..++..-.++-.+- ..
T Consensus 98 ~~km~~~~Lw~RpMF~~spW~~te-L~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~ 176 (367)
T PF12217_consen 98 SNKMVRAELWSRPMFHDSPWRITE-LGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPG 176 (367)
T ss_dssp T--EEEEEEEEEE-STTS--EEEE-EES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT
T ss_pred hhhhhhhhhhcccccccCCceeee-cccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCc
Confidence 333455556653 577887643 222232 345678888888888888655443333332221 11
Q ss_pred CCcEEEeeecCCCCCcccceEEEEECCEEEEEeccC-CCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeE
Q 006334 215 SLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVG-DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDI 293 (650)
Q Consensus 215 t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~-~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~l 293 (650)
...=..++ ......-+..+.-.+++.+|+.--.. ....-+.+.+-+.....|..+.... .......--+..++.|
T Consensus 177 ~~vrr~i~--sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~--nvHhtnlPFakvgD~l 252 (367)
T PF12217_consen 177 VFVRRIIP--SEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPN--NVHHTNLPFAKVGDVL 252 (367)
T ss_dssp --EEEE----GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEETTEE
T ss_pred ceeeeech--hhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccc--cccccCCCceeeCCEE
Confidence 11111222 12222334456667899999885332 3344456888888889999997531 1112233345679999
Q ss_pred EEEcCCC
Q 006334 294 VIYGGCG 300 (650)
Q Consensus 294 yV~GG~~ 300 (650)
|+||-..
T Consensus 253 ~mFgsER 259 (367)
T PF12217_consen 253 YMFGSER 259 (367)
T ss_dssp EEEEE-S
T ss_pred EEEeccc
Confidence 9998643
No 155
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=42.18 E-value=1.9e+02 Score=33.33 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCcceeEEEEEC--CEEEEEccCCCCcccceEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEECCEEEEEcccCCCcCc
Q 006334 26 PERWGHSACYSH--GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTL-ATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKV 102 (650)
Q Consensus 26 ~~R~ghs~v~~~--~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l-~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ 102 (650)
-|+.|..+++.. -.||+.|- .+++|++|+..++|-.- ... .+-..+...--.+.|+.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~----~~~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETD----SGELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccc----cccceeeeecCccceEEecccCc----
Confidence 366777777653 45666543 36899999999998542 221 01111222222467888998654
Q ss_pred CeEEEEECCCCc-EEeeecCCC---CCCCC--cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 103 NDLHILDLESKE-WMRPECRGA---PPSPR--ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 103 ndv~~yD~~t~~-W~~l~~~~~---~P~~R--~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
.+..+|+.+.+ -..+..... .|..- ..-++..+.++-|-+.=|.. ...+++||+.+.
T Consensus 198 -~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 198 -VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRAS 260 (703)
T ss_pred -eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccC
Confidence 46667776653 222222211 22211 12344444454555543432 246999998764
No 156
>PTZ00420 coronin; Provisional
Probab=41.92 E-value=6.2e+02 Score=29.47 Aligned_cols=153 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEE-EeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWS-TLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~-~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+++.||.+ ..+.+||+.+..-. .+. . + ..-.++.+ .++.+++.++.+ ..+.+||+.+.+-.
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~---~--~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN-M---P--KKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe-c---C--CcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence 455556643 35778888776421 111 1 1 11123333 367777776643 35888999876432
Q ss_pred eeecCCCCCCCCcccEEE---EEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCCCCCcceeeee---
Q 006334 117 RPECRGAPPSPRESHTAT---LVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSNVI--- 189 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~---~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v~~--- 189 (650)
.. ..+ ....+..-... ...++..++.+|.+.. ....+.+||+.+. .-.... .+... ...-+..+
T Consensus 203 ~t-l~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~---~~R~VkLWDlr~~~~pl~~~---~ld~~-~~~L~p~~D~~ 273 (568)
T PTZ00420 203 SS-FHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKN---NMREMKLWDLKNTTSALVTM---SIDNA-SAPLIPHYDES 273 (568)
T ss_pred EE-Eec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCC---CccEEEEEECCCCCCceEEE---EecCC-ccceEEeeeCC
Confidence 11 011 11111111111 1135566777776421 1235888887642 111000 01000 00001112
Q ss_pred cCEEEEEeccCCCCccCeEEEEECCCCcEEEe
Q 006334 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRL 221 (650)
Q Consensus 190 ~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i 221 (650)
.+.+|+.|..+ +.+..|+.....-..+
T Consensus 274 tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 274 TGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 36778877544 4678888766543333
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=41.23 E-value=5.6e+02 Score=28.74 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 237 INIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 237 v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+..++.+++.|+.++ .+.++|+.+.+-.+
T Consensus 285 is~DgtlLlSGd~dg-----~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDG-----KVCVWDIYSKQCIR 313 (476)
T ss_pred EecCccEEEeeCCCC-----CEEEEecchHHHHH
Confidence 445789999987654 57788887765443
No 158
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=41.21 E-value=6.1e+02 Score=29.16 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=68.0
Q ss_pred ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEecc------CCCcccCeEEEEECCCCcEEEeecCCCC
Q 006334 204 YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGV------GDKHYYNDIWILNVSTCSWSQLDTCGQQ 277 (650)
Q Consensus 204 ~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~------~~~~~~~dv~~yD~~t~~W~~l~~~~~~ 277 (650)
....+++|+++....+......-+-.-...++|--+++.+-|+--. ......+.++++|..-+.--.++. +
T Consensus 246 ~~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~---l 322 (521)
T PF09826_consen 246 ESTTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEG---L 322 (521)
T ss_pred CceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccc---c
Confidence 3457899999988887655321122236677888888887777533 234567889999854444444443 3
Q ss_pred CCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 278 PQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 278 p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
..+=.=+++=+++++.|++ .-+..+-++++|+..
T Consensus 323 a~gE~IysvRF~Gd~~Y~V-----TFrqvDPLfviDLsd 356 (521)
T PF09826_consen 323 APGERIYSVRFMGDRAYLV-----TFRQVDPLFVIDLSD 356 (521)
T ss_pred CCCceEEEEEEeCCeEEEE-----EEeecCceEEEECCC
Confidence 3333345777888888887 234568899999974
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=40.35 E-value=5e+02 Score=29.48 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=49.8
Q ss_pred eEEEEecCC----CceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCccc
Q 006334 157 DLHVLDLKT----MRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRA 232 (650)
Q Consensus 157 dv~~yd~~t----~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~ 232 (650)
-+..||... ..|.+.. . .|..+-+++-.+..|++-=|++ ..++.||.....-+..-.. ..|
T Consensus 188 ~VtlwDv~g~sp~~~~~~~H---s--AP~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~l~y-~~P---- 252 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAH---S--APCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQASTDRLTY-SHP---- 252 (673)
T ss_pred eEEEEeccCCCcccchhhhc---c--CCcCcceecCCccceEEEeccc-----ceEEEeecccccccceeee-cCC----
Confidence 356666543 3455432 2 3444555666688888888876 5899999875543332211 111
Q ss_pred ceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 233 GHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 233 ~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
.+.+.+ ++-.|++.|.. ..+++.||+...
T Consensus 253 -lstvaf~~~G~~L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNS----KGELIAYDMRST 282 (673)
T ss_pred -cceeeecCCceEEEeecC----CceEEEEecccC
Confidence 123333 33344444433 347999998754
No 160
>PTZ00420 coronin; Provisional
Probab=39.67 E-value=6.7e+02 Score=29.20 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=70.6
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEE-eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWM-RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
.+++.||.+ ..+.++|+.+.+=. .+. .+ ..-.++....++.+++.++.+ ..+.+||+.+..
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCc
Confidence 455666654 35777888776421 111 11 123344444567888777753 358889987653
Q ss_pred eeeccccCCCCCCCCcceeee-----ecCEEEEEeccCCCCccCeEEEEECCCC-cEEEeeecCCCCCcccceEEEEE--
Q 006334 168 WASPAVKGDIPVPRDSHSSNV-----IANRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAIIGSSPGVRAGHAAINI-- 239 (650)
Q Consensus 168 Wt~i~~~~~lP~~R~~hs~v~-----~~~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~~g~~P~~R~~~s~v~~-- 239 (650)
-.. .. ..........++. -++..++.+|.+.. ....+..||+.+. .-........ ..+..+..+
T Consensus 201 ~i~-tl--~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~----~~~~L~p~~D~ 272 (568)
T PTZ00420 201 IAS-SF--HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDN----ASAPLIPHYDE 272 (568)
T ss_pred EEE-EE--ecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecC----CccceEEeeeC
Confidence 221 00 0111100011111 23455566564432 2246888887742 2111110000 111111121
Q ss_pred -CCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 240 -GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 240 -~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
.+.+|+.|..+ ..++.|++....-..+
T Consensus 273 ~tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 273 STGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 35677777433 3578888766643333
No 161
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=38.59 E-value=5.5e+02 Score=27.92 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccC----CCcCcCeEEEEECCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTN----GYKKVNDLHILDLES 112 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~----~~~~~ndv~~yD~~t 112 (650)
..+||.-.....- .+.++++|..+.+-...-..+.. || .+..- +..|||.-.+- -....+.+.+||..+
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~~--P~---~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGFL--PN---PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEEEEEEccCC--Cc---eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 4567665532221 27899999998654443333222 33 23333 46789877642 223468899999999
Q ss_pred CcEEe-eecCCCCCCCC-----cccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCcee
Q 006334 113 KEWMR-PECRGAPPSPR-----ESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWA 169 (650)
Q Consensus 113 ~~W~~-l~~~~~~P~~R-----~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt 169 (650)
.+-.. +. .++.|| +-....+..+++ |||. -.+ .-+.+-++|+.+++-.
T Consensus 87 ~~~~~~i~---~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~-----p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 87 HLPIADIE---LPEGPRFLVGTYPWMTSLTPDNKTLLFY-QFS-----PSPAVGVVDLEGKAFV 141 (352)
T ss_pred CcEEeEEc---cCCCchhhccCccceEEECCCCCEEEEe-cCC-----CCCEEEEEECCCCcEE
Confidence 87543 31 223333 223444444555 5553 321 2356777777766554
No 162
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=33.75 E-value=6.1e+02 Score=27.00 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+..||..+++-...-..+ ..--.+++.+..-.++||.++ .+-+||+.+..=..+ +..-.+-. .+
T Consensus 36 slrlYdv~~~~l~~~~~~~-----~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~i---gth~~~i~--ci 100 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHG-----APLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQI---GTHDEGIR--CI 100 (323)
T ss_pred cEEEEeccchhhhhheecC-----CceeeeeccCCceEEEeccCc-----eEEEEEecCCcceee---ccCCCceE--EE
Confidence 6888998877432221111 111244555655556677654 688899998876665 22222111 11
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEEC
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDM 213 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~ 213 (650)
........+|.||++ ..+-.+|+....-. +..-.+-.-+++.+.++. +|+|+.+ ..+..||+
T Consensus 101 ~~~~~~~~vIsgsWD-------~~ik~wD~R~~~~~-----~~~d~~kkVy~~~v~g~~-LvVg~~~-----r~v~iyDL 162 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWD-------KTIKFWDPRNKVVV-----GTFDQGKKVYCMDVSGNR-LVVGTSD-----RKVLIYDL 162 (323)
T ss_pred EeeccCCeEEEcccC-------ccEEEEeccccccc-----cccccCceEEEEeccCCE-EEEeecC-----ceEEEEEc
Confidence 112235567888885 24777787652111 112222233344444444 4455533 47888988
Q ss_pred CCCc
Q 006334 214 NSLT 217 (650)
Q Consensus 214 ~t~~ 217 (650)
.+..
T Consensus 163 Rn~~ 166 (323)
T KOG1036|consen 163 RNLD 166 (323)
T ss_pred cccc
Confidence 7654
No 163
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=33.61 E-value=4.9e+02 Score=25.82 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=39.9
Q ss_pred cCeEEEEECCCCcEEeeecCCC--CCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeecc
Q 006334 102 VNDLHILDLESKEWMRPECRGA--PPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~--~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
.-++|.+|..++.|..+.+... --.|. .. ..+.+.. ++|+|.. .+.-.-=..+|+|++.++.-+.+.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i-~WiDD~~L~vIIG~a-~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YI-EWIDDNNLAVIIGYA-HGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCc--ee-EEecCCcEEEEEccc-cceEccCCeEEEEEccCCceeEee
Confidence 6789999999998876644322 12333 22 2233444 4555532 111112357999999999888765
No 164
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=32.62 E-value=4.5e+02 Score=28.48 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=50.3
Q ss_pred CeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec-CCCCCCCccee
Q 006334 206 GDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT-CGQQPQGRFSH 284 (650)
Q Consensus 206 n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~-~~~~p~~R~~h 284 (650)
.++-.++..+..... .+..-+.+.+|..+.++++|-|-.+ +.+-.||++.+..-.+-. -.++ -
T Consensus 340 RTikvW~~st~efvR-----tl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cLRvLeGHEeL------v 403 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRVLEGHEEL------V 403 (499)
T ss_pred ceEEEEeccceeeeh-----hhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHHHHHhchHHh------h
Confidence 356667766665544 2344577888999999999987543 468888888775433211 0001 0
Q ss_pred EEEEECCeEEEEcCCC
Q 006334 285 AAVVTGSDIVIYGGCG 300 (650)
Q Consensus 285 sav~~~~~lyV~GG~~ 300 (650)
-++-.+++-+|-||++
T Consensus 404 RciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYD 419 (499)
T ss_pred hheeecCceeeecccc
Confidence 2445588888899875
No 165
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.03 E-value=4.2e+02 Score=27.29 Aligned_cols=105 Identities=11% Similarity=0.179 Sum_probs=65.4
Q ss_pred CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec--CEEEEEeccCCCCccCeEEEEECCC
Q 006334 138 DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA--NRLFVYGGDCGDQYHGDIDMLDMNS 215 (650)
Q Consensus 138 ~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~--~~Iyv~GG~~~~~~~n~v~~yd~~t 215 (650)
++.=+..||-+ ..+..+|..+++-..- +-.--..--++.++ ..+++-|+.+ .++..+|..+
T Consensus 70 Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr-----~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS 132 (307)
T KOG0316|consen 70 DNSKFASCGGD-------KAVQVWDVNTGKVDRR-----FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRS 132 (307)
T ss_pred cccccccCCCC-------ceEEEEEcccCeeeee-----cccccceeeEEEecCcceEEEecccc-----ceeEEEEccc
Confidence 55556666643 2488889888754320 00000111223333 3466666654 5788999999
Q ss_pred CcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 216 LTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 216 ~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
...+.+. .+...+-+...+.+.++.+|.|-.++ .+..||+..++
T Consensus 133 ~s~ePiQ---ildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 133 RSFEPIQ---ILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGT 176 (307)
T ss_pred CCCCccc---hhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecce
Confidence 9888887 34456777788888888888875543 46778887664
No 166
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=30.92 E-value=8e+02 Score=27.51 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=87.1
Q ss_pred CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 99 YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 99 ~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
++..|++|++|..-+---++ ++..+..|-+..-. . .+.+||+-=+. .+-++..|+.+-.=-+ ..|.+.
T Consensus 402 de~~N~vYilDe~lnvvGkl--tGl~~gERIYAvRf-~-gdv~yiVTfrq------tDPlfviDlsNPenPk--vlGeLK 469 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKL--TGLAPGERIYAVRF-V-GDVLYIVTFRQ------TDPLFVIDLSNPENPK--VLGELK 469 (603)
T ss_pred CCccceeEEEcCCCcEEEEE--eccCCCceEEEEEE-e-CceEEEEEEec------cCceEEEEcCCCCCCc--eeEEEe
Confidence 44579999999887765554 45667777655443 3 47888764332 3347778876532221 223333
Q ss_pred CCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCC-------------cEEEeeecCCCCCcccceEEEEECC--E
Q 006334 179 VPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSL-------------TWSRLAIIGSSPGVRAGHAAINIGT--K 242 (650)
Q Consensus 179 ~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~-------------~W~~i~~~g~~P~~R~~~s~v~~~~--~ 242 (650)
.|-+..-+--+ +|.+.-+|-+.+. -.+-.||.... -|+.+ -+.|-+..++. .
T Consensus 470 IPGfS~YLHpigen~~lGvG~~~g~---vKiSLFdiSdl~~PkEv~~y~l~~~wspv---------f~dhHAFl~d~~~~ 537 (603)
T COG4880 470 IPGFSEYLHPIGENRLLGVGAYQGG---VKISLFDISDLAAPKEVSNYTLSNAWSPV---------FYDHHAFLYDPEAE 537 (603)
T ss_pred cCCchhhccccCCCcEEEeecccCC---ceEEEEeccCCCCchhhhheehhhhcchh---------hhccceeecCCccc
Confidence 33222212222 3555555554432 23444554321 23322 23344444443 4
Q ss_pred EEEEeccCCCcccCeEEEEECCCCcEEEeec-CCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDT-CGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~-~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
|+.+- .....++|-++.+ -+.+.. .-..+.- -+.+.++.+|++|| +++|.+|-
T Consensus 538 ifFlP------ay~~gyif~iedg-~kl~k~~e~k~na~----RA~fi~dylY~vg~--------~ev~~lde 591 (603)
T COG4880 538 IFFLP------AYLGGYIFFIEDG-SKLRKRAERKLNAD----RAFFIKDYLYLVGG--------NEVWKLDE 591 (603)
T ss_pred EEEec------ccCccEEEEEecC-ceeeehhhhcccce----eeEEecceEEEecc--------ceeEEecc
Confidence 54442 2233445555555 111111 1112222 35677999999998 46777765
No 167
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.24 E-value=1.2e+03 Score=29.37 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=119.9
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCC-------CCCC--CcceEEEEE--CCEEEEEcccCCCcCcCe
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQ-------GPGP--RDSHSAILW--GHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~-------~P~p--R~~hsa~~~--~~~lyVfGG~~~~~~~nd 104 (650)
.++.|||--= ..+.++++|.....-..+...+. .... ..-+.+++. ++.|||.-.. .+.
T Consensus 578 ~~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-----n~~ 647 (1057)
T PLN02919 578 LNNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-----NHA 647 (1057)
T ss_pred CCCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----Cce
Confidence 3678888532 33568889987543222222111 0011 122455554 4568885432 256
Q ss_pred EEEEECCCCcEEeeecCCCCC----C------C-Ccc-cEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceeec
Q 006334 105 LHILDLESKEWMRPECRGAPP----S------P-RES-HTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASP 171 (650)
Q Consensus 105 v~~yD~~t~~W~~l~~~~~~P----~------~-R~~-hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i 171 (650)
+.++|+.++.-+.+...+... . . -.. +.+++.. ++.|||.... .+.+++||..+.....+
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEE
Confidence 888888776654442211100 0 0 011 2333333 5778886432 24588899877655432
Q ss_pred cccC-------CCCC---CCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCC-CCC---------
Q 006334 172 AVKG-------DIPV---PRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGS-SPG--------- 229 (650)
Q Consensus 172 ~~~~-------~lP~---~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~-~P~--------- 229 (650)
...+ .... ...-+.+++. ++.||+....+ +.+.+||+.+.....+..... .+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 2111 0000 0011122222 24588875533 689999988766443321000 000
Q ss_pred -----cc--cceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCC-------CCCcc--eeEEEEE-CC
Q 006334 230 -----VR--AGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQ-------PQGRF--SHAAVVT-GS 291 (650)
Q Consensus 230 -----~R--~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~-------p~~R~--~hsav~~-~~ 291 (650)
.. .-..++. .++.|||.-. ....|.+||+.++....+...+.. ..+.+ -+++++. ++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs-----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADS-----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEEC-----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 00 0112222 3467888843 245799999998887766532210 01111 1233333 56
Q ss_pred eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 292 DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 292 ~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+|||.-..+ +.+.++++.
T Consensus 871 ~lyVaDt~N------n~Irvid~~ 888 (1057)
T PLN02919 871 RLFVADTNN------SLIRYLDLN 888 (1057)
T ss_pred CEEEEECCC------CEEEEEECC
Confidence 788874421 355666664
No 168
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=29.69 E-value=1.1e+03 Score=28.63 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=21.2
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEe
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTL 68 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l 68 (650)
.+-+++++.||+... .+.++.+|..+++ |+.-
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEc
Confidence 345678999999654 2467777776543 6653
No 169
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.06 E-value=1.1e+03 Score=28.40 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=38.0
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEe
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLD 162 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd 162 (650)
.++.++++.++.|.+ +++-..+..+.+..+- ++ .-+.++...+..++.+|.|+.. .++.+||
T Consensus 379 l~vS~d~~~~~Sga~-----~SikiWn~~t~kciRT-----i~-~~y~l~~~Fvpgd~~Iv~G~k~-------Gel~vfd 440 (888)
T KOG0306|consen 379 LCVSSDSILLASGAG-----ESIKIWNRDTLKCIRT-----IT-CGYILASKFVPGDRYIVLGTKN-------GELQVFD 440 (888)
T ss_pred EEeecCceeeeecCC-----CcEEEEEccCcceeEE-----ec-cccEEEEEecCCCceEEEeccC-------CceEEEE
Confidence 344456666665543 2455666665554331 12 2267777777666767777652 3578888
Q ss_pred cCCC
Q 006334 163 LKTM 166 (650)
Q Consensus 163 ~~t~ 166 (650)
+...
T Consensus 441 laS~ 444 (888)
T KOG0306|consen 441 LASA 444 (888)
T ss_pred eehh
Confidence 7653
No 170
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=26.84 E-value=5.4e+02 Score=24.18 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=47.2
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEEC-
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVW-STLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDL- 110 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW-~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~- 110 (650)
+.++|.+|=++-........-+..||+.+.++ ..++.............+.++ +++|-++-- ......-++|+.+-
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~-~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQ-CDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEe-ccCCccEEEEEEeee
Confidence 45677777776654333222688999999999 555332110001122333233 567666632 12223468898873
Q ss_pred --CCCcEEeee
Q 006334 111 --ESKEWMRPE 119 (650)
Q Consensus 111 --~t~~W~~l~ 119 (650)
...+|+++-
T Consensus 81 ~~~~~SWtK~~ 91 (164)
T PF07734_consen 81 GYGKESWTKLF 91 (164)
T ss_pred ccCcceEEEEE
Confidence 256899873
No 171
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=26.81 E-value=5.5e+02 Score=27.84 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred ccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEE
Q 006334 231 RAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELL 310 (650)
Q Consensus 231 R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~ 310 (650)
|+....+-++++++|- ... -..+-++++.+..+... +...+.|-++...+++++|-|-.+ +.+-
T Consensus 320 rAaVNvVdfd~kyIVs-ASg----DRTikvW~~st~efvRt-----l~gHkRGIAClQYr~rlvVSGSSD------ntIR 383 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVS-ASG----DRTIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDRLVVSGSSD------NTIR 383 (499)
T ss_pred hhheeeeccccceEEE-ecC----CceEEEEeccceeeehh-----hhcccccceehhccCeEEEecCCC------ceEE
Confidence 4555555667774443 221 13577788887776654 233455667888899998887632 3455
Q ss_pred EEecC
Q 006334 311 VLQLG 315 (650)
Q Consensus 311 ~l~l~ 315 (650)
.+++.
T Consensus 384 lwdi~ 388 (499)
T KOG0281|consen 384 LWDIE 388 (499)
T ss_pred EEecc
Confidence 55554
No 172
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=26.28 E-value=8.8e+02 Score=26.49 Aligned_cols=146 Identities=8% Similarity=0.100 Sum_probs=72.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC--c
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK--E 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~ 114 (650)
++.+.+.||-+ +-.++++..++.|--...- .. --.......+++.++.-|++++. +.+++..++ .
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~eltg-HK--DSVt~~~FshdgtlLATGdmsG~-----v~v~~~stg~~~ 141 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGELTG-HK--DSVTCCSFSHDGTLLATGDMSGK-----VLVFKVSTGGEQ 141 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeEecC-CC--CceEEEEEccCceEEEecCCCcc-----EEEEEcccCceE
Confidence 57888888854 3467888888886543221 10 11222334458889999998763 334433333 4
Q ss_pred EEeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEE
Q 006334 115 WMRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~I 193 (650)
|.... ....-.-... ....++++|-. + ..+|+|.+.+..-.++- .-+..++...-..-+++.
T Consensus 142 ~~~~~-------e~~dieWl~WHp~a~illAG~~-D------GsvWmw~ip~~~~~kv~---~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 142 WKLDQ-------EVEDIEWLKWHPRAHILLAGST-D------GSVWMWQIPSQALCKVM---SGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred EEeec-------ccCceEEEEecccccEEEeecC-C------CcEEEEECCCcceeeEe---cCCCCCcccccccCCCce
Confidence 54320 0001111111 12345555543 2 35899988876444432 111122222222223554
Q ss_pred EEEeccCCCCccCeEEEEECCCCc
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
.+.|= ++ ..+.++|+.+.+
T Consensus 205 ~~tgy-~d----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 205 ILTGY-DD----GTIIVWNPKTGQ 223 (399)
T ss_pred EEEEe-cC----ceEEEEecCCCc
Confidence 44433 22 467778887764
No 173
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.22 E-value=9.6e+02 Score=26.88 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=52.4
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEECCEEEEEcccCCCcCcCeEEEEECCCCc-EEeeecCCCCCCCCcc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILWGHKMIVFGGTNGYKKVNDLHILDLESKE-WMRPECRGAPPSPRES 130 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~ 130 (650)
..+-+||+.+.. .+... |..-.-- ++.+.+|-.|+.-+.+.. .+..+|+.... ...+ ..+....-
T Consensus 369 ~~vkiwdlks~~--~~a~F---pght~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~----~l~~~~~v 435 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKF---PGHTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTI----QLDEKKEV 435 (506)
T ss_pred ceEEEEEcCCcc--ccccC---CCCCCceeEEEeccCceEEEEEecCC----eEEEEEehhhccccee----eccccccc
Confidence 357778887765 33332 2211111 223345666665555432 27777876543 2222 11111112
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecc
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
.+......+..++++|.+ -.+|.|+-.+..|+++.
T Consensus 436 ~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTEIK 470 (506)
T ss_pred eeEEEcCCCCeEEeecce-------eEEEEEecccccceeee
Confidence 223333346777777753 24777888899999887
No 174
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=8.1e+02 Score=26.96 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=77.9
Q ss_pred CEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCC---CCCCCcceEEEEECC---EEEEEcccCCCcCcCeEEEEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQ---GPGPRDSHSAILWGH---KMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~---~P~pR~~hsa~~~~~---~lyVfGG~~~~~~~ndv~~yD 109 (650)
.+|+.+||..+ .+.+-+||+. ...|+.-...++ .-.|.+...+.++++ .-|+.+ +.+..+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-----T~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-----TRYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-----ecceeEEEec
Confidence 48888899643 4556666654 445764332211 134555556666543 333322 3367889999
Q ss_pred CCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee
Q 006334 110 LESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 110 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
+...+ +.+......-.+.. ++....++.++++|-. ..++..||...++--.....+---..| +...+
T Consensus 233 t~~qR-RPV~~fd~~E~~is--~~~l~p~gn~Iy~gn~-------~g~l~~FD~r~~kl~g~~~kg~tGsir---sih~h 299 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPIS--STGLTPSGNFIYTGNT-------KGQLAKFDLRGGKLLGCGLKGITGSIR---SIHCH 299 (412)
T ss_pred CcccC-cceeEeccccCcce--eeeecCCCcEEEEecc-------cchhheecccCceeeccccCCccCCcc---eEEEc
Confidence 98553 22211112222222 2223334555555543 356888999887655432222111122 22233
Q ss_pred cC-EEEEEeccCCCCccCeEEEEECCC
Q 006334 190 AN-RLFVYGGDCGDQYHGDIDMLDMNS 215 (650)
Q Consensus 190 ~~-~Iyv~GG~~~~~~~n~v~~yd~~t 215 (650)
.+ .+.+.+|.+ .-+-+||..+
T Consensus 300 p~~~~las~GLD-----RyvRIhD~kt 321 (412)
T KOG3881|consen 300 PTHPVLASCGLD-----RYVRIHDIKT 321 (412)
T ss_pred CCCceEEeeccc-----eeEEEeeccc
Confidence 33 577777754 4567788766
No 175
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=24.12 E-value=1.7e+02 Score=27.48 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=41.8
Q ss_pred EEEEccEEeeeeeeCCCCccccCCCcccCCCCCCCccccccccCCCccccCCccCCCCcccccccccccccccccccccc
Q 006334 538 TATINGRIFRGVLFPPGPGIVSRGSPFTQAPSPPSHMALAQSFPNSNHIERFKPSQQPVGFSTPKSVRNHQQTQVSRQFP 617 (650)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (650)
+|..+|.+||=..-.|.+....-..-..+-+++.+.-+...+||- .++...++++..-|+.|.+....-...-..-.|
T Consensus 61 ~Ve~DGTtyr~~~~~~~~~~~~g~s~~~sp~ss~~~~~~ss~~~s--p~~s~~~s~~ss~~pSp~~~d~~~~~~~~~~~p 138 (150)
T PF05687_consen 61 TVEPDGTTYRKGCKPPEPMEIVGSSASASPCSSYQLSPNSSAFPS--PVPSYQPSPSSSSFPSPSSLDSINNSSSSSLIP 138 (150)
T ss_pred EEccCCCeeccCCCCCccccccccCCCCCCcCCCcCCccccCcCC--cccccCCCcCCCCCCCCcccccccccccccccc
Confidence 456789999966655533322222112222333344444555555 444456666777777665543221111134456
Q ss_pred ccccCC
Q 006334 618 ICRSTS 623 (650)
Q Consensus 618 ~~~~~~ 623 (650)
+++...
T Consensus 139 ~~~~~~ 144 (150)
T PF05687_consen 139 WLKNLS 144 (150)
T ss_pred hhhccc
Confidence 655544
No 176
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=24.00 E-value=6.6e+02 Score=27.73 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=82.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccC---------C---------CcCcCeEEEEECCC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTN---------G---------YKKVNDLHILDLES 112 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~---------~---------~~~~ndv~~yD~~t 112 (650)
..|+..|+.+.+=+.+-.. |..-.+....+. ++.. ++|=.. . ......++..|+.+
T Consensus 102 ~~l~~vdL~T~e~~~vy~~---p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEV---PDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp TEEEEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred CeEEEEECCcCcEEEEEEC---CcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 3688889888765555444 333443333333 2222 222111 0 11235788999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEE---ccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIF---GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~---GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
.+.+.+-.. ..-.+|....-.+..+++| |..+ .+-..+|..|.+......+.. ..+.-..+|-.-..
T Consensus 178 G~~~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~----~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 178 GERKVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWD----LVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVP 247 (386)
T ss_dssp --EEEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TT----TSS-SEEEEETTS---EESS-----TTEEEEEEEE-T
T ss_pred CceeEEEec----CccccCcccCCCCCCEEEEeccCCcc----eeceEEEEEEcCCCcceeeec--CCCCcccccccccC
Confidence 988776322 2233555444334556655 3332 223479999987655544431 23334445555444
Q ss_pred cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccC
Q 006334 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVG 250 (650)
Q Consensus 190 ~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~ 250 (650)
++..+.+=++.....-.-+..||+.+..=+.+. .+ ++..|-+...++++++==|.+
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~---~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM---EM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEE---EE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEE---eC--CceeeeEEcCCCCEEEecCCC
Confidence 554333323222222335788999887533333 22 257788888888888776654
No 177
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.20 E-value=9.9e+02 Score=25.98 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=66.6
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccC----CCcccCeEEEEECCC
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVG----DKHYYNDIWILNVST 265 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~----~~~~~~dv~~yD~~t 265 (650)
..+||.-....... +.++++|..+.+-...-..|. .+| .+..- +..||++-.+. -+...+.+.+||+.+
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~--~P~---~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGGF--LPN---PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEEEEEEEccC--CCc---eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45676644322222 789999988865443221222 222 23333 35899997642 234457799999998
Q ss_pred CcEEEeecCCCCCCCc-----ceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecCCCCCCCcccccee
Q 006334 266 CSWSQLDTCGQQPQGR-----FSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLGAEHPNYRYNISMC 328 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R-----~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~~~~~~~~~~~~~c 328 (650)
.+=..--..+ +.+| +-...++. ++ .|||. +..+.+.+-++|+...........+.|
T Consensus 87 ~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~-----n~~p~~~V~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 87 HLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFY-----QFSPSPAVGVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred CcEEeEEccC--CCchhhccCccceEEECCCCCEEEEe-----cCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence 8755321111 2223 22233333 44 47776 434456778888876554333334434
No 178
>PRK01029 tolB translocation protein TolB; Provisional
Probab=21.76 E-value=1.1e+03 Score=26.04 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=37.7
Q ss_pred CeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 206 GDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 206 n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
..+++||+.+.+...+... +. ........-+++.+++..... ...++|.+|+.+...+.+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~~-~~~~p~wSpDG~~L~f~~~~~--g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---PE-NKESPSWAIDSLHLVYSAGNS--NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---CC-CccceEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEeec
Confidence 5799999999988877621 11 111122233454444432222 23689999999998887753
No 179
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.91 E-value=9.9e+02 Score=25.12 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=62.8
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCe
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGD 207 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~ 207 (650)
..-++++.+-+-|++=|.. ...+-..|+.++ .|+.+- ..|...++++++|- +|+|-++ ..
T Consensus 13 aspLVV~~dskT~v~igSH------s~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdf-VV~GCy~-----g~ 74 (354)
T KOG4649|consen 13 ASPLVVCNDSKTLVVIGSH------SGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDF-VVLGCYS-----GG 74 (354)
T ss_pred CCcEEEecCCceEEEEecC------CceEEEecCCCCcEEeehhh------CceeeeeeEEECCE-EEEEEcc-----Cc
Confidence 3345556444555544542 234666777654 688533 46777788888877 5666655 36
Q ss_pred EEEEECCCC--cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 208 IDMLDMNSL--TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 208 v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+|.++.+++ -|...... ....-+.+..++.++-+|-.+ ..+|.+|+.+..
T Consensus 75 lYfl~~~tGs~~w~f~~~~-----~vk~~a~~d~~~glIycgshd-----~~~yalD~~~~~ 126 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE-----TVKVRAQCDFDGGLIYCGSHD-----GNFYALDPKTYG 126 (354)
T ss_pred EEEEEecchhheeeeeehh-----hhccceEEcCCCceEEEecCC-----CcEEEecccccc
Confidence 788887766 47765521 111222333444555555433 247788887764
Done!