BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006340
(649 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSK--------HSINGQLG 155
+Q +DV L ++ + GNHD+ G ++ SK + + ++
Sbjct: 66 RFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIP 125
Query: 156 RKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQST 215
R NV SV + + D L D +S P NL A L I +L+ +
Sbjct: 126 R-SNV-SVAIFMLDTVTLCGNSDDFVSQQPERPRNLA--LARTQLAWIKKQLA-----AA 176
Query: 216 KPVTKITFGHFPVSFSASSHSG-----RSLQDIFLKHSLSAYLCGHLHT 259
K + GH+PV +S + H + L + H ++AYLCGH H
Sbjct: 177 KEDYVLVAGHYPV-WSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHN 224
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKH----SINGQLGRKQN 159
+Q +DV L +Y + GNHD+ G ++ SK S +L K
Sbjct: 87 RFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVP 146
Query: 160 VNSVTVQIG--DEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKP 217
+++TV I D L D +S P +L A L+ + +L+ + K
Sbjct: 147 RSNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDL--GVARTQLSWLKKQLA-----AAKE 199
Query: 218 VTKITFGHFPVSFSASSHSG-----RSLQDIFLKHSLSAYLCGHLHT 259
+ GH+P+ +S + H ++L+ + + ++AYLCGH H
Sbjct: 200 DYVLVAGHYPI-WSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHN 245
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKH----SINGQLGRKQN 159
+Q +DV L +Y + GNHD+ G ++ SK S +L K
Sbjct: 66 RFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVP 125
Query: 160 VNSVTVQIG--DEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKP 217
+++TV I D L D +S P +L A L+ + +L+ + K
Sbjct: 126 RSNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDL--GVARTQLSWLKKQLA-----AAKE 178
Query: 218 VTKITFGHFPVSFSASSHSG-----RSLQDIFLKHSLSAYLCGHLHT 259
+ GH+P+ +S + H ++L+ + + ++AYLCGH H
Sbjct: 179 DYVLVAGHYPI-WSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHN 224
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 105 YQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKH-SINGQLGR-----KQ 158
+Q +DV L K +Y + GNHD+ G ++ SK + R Q
Sbjct: 71 FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ 130
Query: 159 NVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPV 218
SV + + D L D +S P ++ A L+ + +L+ + +
Sbjct: 131 TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDV--KLARTQLSWLKKQLA-----AARED 183
Query: 219 TKITFGHFPVSFSASSHSG-----RSLQDIFLKHSLSAYLCGHLHT 259
+ GH+PV +S + H + L+ + + ++AYLCGH H
Sbjct: 184 YVLVAGHYPV-WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHN 228
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKH-SINGQLGR-----K 157
+Q +DV L K +Y + GNHD+ G ++ SK + R
Sbjct: 64 RFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIP 123
Query: 158 QNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKP 217
Q SV + + D L D +S P ++ A L+ + +L+ + +
Sbjct: 124 QTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDV--KLARTQLSWLKKQLA-----AARE 176
Query: 218 VTKITFGHFPVSFSASSHSG-----RSLQDIFLKHSLSAYLCGHLHT 259
+ GH+PV +S + H + L+ + + ++AYLCGH H
Sbjct: 177 DYVLVAGHYPV-WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHN 222
>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728
Length = 194
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 238 RSLQDIFLKHSLSAYLCGHLHTRFGKNLKRHHYMD 272
++ +D+ H++S Y C H+++ G+N KRH +++
Sbjct: 44 KTAEDLIPAHTVS-YFCDHVYSEHGENGKRHSHVE 77
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 328 GHISYVDIDFKSGFRKTIVVP-TFPLDSRFMSRSSSQKYECEHMVAQSYATIRALVFSVS 386
G I Y +++ + GFR I P TF S +++ ++ Q Y H+ Q F +
Sbjct: 603 GDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQ---------FKTT 653
Query: 387 PILSVVAKVYDSRSGKHDLVMEELMR 412
+ ++ +Y+S G +D ++ EL++
Sbjct: 654 SLDGLI--LYNSGDG-NDFIVVELVK 676
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 328 GHISYVDIDFKSGFRKTIVVP-TFPLDSRFMSRSSSQKYECEHMVAQSYATIRALVFSVS 386
G I Y +++ + GFR I P TF S +++ ++ Q Y H+ Q F +
Sbjct: 819 GDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQ---------FKTT 869
Query: 387 PILSVVAKVYDSRSGKHDLVMEELMR 412
+ ++ +Y+S G +D ++ EL++
Sbjct: 870 SLDGLI--LYNSGDG-NDFIVVELVK 892
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 328 GHISYVDIDFKSGFRKTIVVP-TFPLDSRFMSRSSSQKYECEHMVAQSYATIRALVFSVS 386
G I Y +++ + GFR I P TF S +++ ++ Q Y H+ Q F +
Sbjct: 828 GDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQ---------FKTT 878
Query: 387 PILSVVAKVYDSRSGKHDLVMEELMR 412
+ ++ +Y+S G +D ++ EL++
Sbjct: 879 SLDGLI--LYNSGDG-NDFIVVELVK 901
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,099,843
Number of Sequences: 62578
Number of extensions: 842568
Number of successful extensions: 1951
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 26
length of query: 649
length of database: 14,973,337
effective HSP length: 105
effective length of query: 544
effective length of database: 8,402,647
effective search space: 4571039968
effective search space used: 4571039968
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)