Query 006340
Match_columns 649
No_of_seqs 335 out of 1985
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07401 MPP_TMEM62_N Homo sapi 100.0 4E-31 8.7E-36 272.8 23.7 210 42-262 1-212 (256)
2 cd07395 MPP_CSTP1 Homo sapiens 99.9 9.1E-24 2E-28 218.5 21.3 197 38-262 2-220 (262)
3 PRK11148 cyclic 3',5'-adenosin 99.9 2.5E-22 5.3E-27 209.5 23.5 190 31-261 5-208 (275)
4 cd07402 MPP_GpdQ Enterobacter 99.9 3E-21 6.4E-26 196.5 18.2 180 42-262 1-196 (240)
5 cd07396 MPP_Nbla03831 Homo sap 99.9 1.2E-20 2.7E-25 195.9 21.2 193 41-262 1-230 (267)
6 cd00839 MPP_PAPs purple acid p 99.9 2.9E-20 6.3E-25 195.2 23.0 268 39-336 3-280 (294)
7 PLN02533 probable purple acid 99.8 2.1E-18 4.5E-23 190.2 24.2 188 39-261 138-335 (427)
8 cd07378 MPP_ACP5 Homo sapiens 99.8 2.4E-18 5.1E-23 179.2 23.0 200 41-262 1-215 (277)
9 cd07399 MPP_YvnB Bacillus subt 99.8 9.4E-19 2E-23 176.1 19.3 147 41-261 1-162 (214)
10 cd00842 MPP_ASMase acid sphing 99.8 2.5E-18 5.3E-23 181.1 17.3 192 61-262 54-263 (296)
11 TIGR03767 P_acnes_RR metalloph 99.8 1.9E-17 4.1E-22 180.3 21.9 136 165-339 294-446 (496)
12 PRK11340 phosphodiesterase Yae 99.7 7.1E-17 1.5E-21 168.2 18.0 208 28-292 37-250 (271)
13 cd07383 MPP_Dcr2 Saccharomyces 99.7 7.5E-17 1.6E-21 160.2 16.9 152 40-261 2-177 (199)
14 KOG1378 Purple acid phosphatas 99.7 6.2E-16 1.3E-20 166.6 24.5 272 29-337 136-422 (452)
15 TIGR03729 acc_ester putative p 99.7 9.8E-17 2.1E-21 164.0 14.2 186 42-261 1-222 (239)
16 TIGR03768 RPA4764 metallophosp 99.7 7.4E-16 1.6E-20 166.3 21.5 137 171-339 304-465 (492)
17 cd07393 MPP_DR1119 Deinococcus 99.7 1.6E-16 3.5E-21 161.9 14.9 190 43-262 1-207 (232)
18 COG1409 Icc Predicted phosphoh 99.7 6E-16 1.3E-20 161.1 17.8 184 41-260 1-193 (301)
19 PTZ00422 glideosome-associated 99.6 2E-14 4.3E-19 154.7 23.7 204 39-262 25-262 (394)
20 KOG2679 Purple (tartrate-resis 99.6 7.8E-15 1.7E-19 146.8 17.5 217 25-262 29-257 (336)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.6 9.7E-15 2.1E-19 142.4 16.8 167 43-261 1-174 (188)
22 cd08163 MPP_Cdc1 Saccharomyces 99.6 9.9E-15 2.2E-19 150.7 17.0 164 70-261 41-229 (257)
23 cd07385 MPP_YkuE_C Bacillus su 99.6 1.3E-14 2.9E-19 146.0 15.1 192 41-288 2-198 (223)
24 cd00840 MPP_Mre11_N Mre11 nucl 99.6 3.3E-14 7.2E-19 142.5 16.3 191 42-262 1-203 (223)
25 PF00149 Metallophos: Calcineu 99.6 3.1E-15 6.8E-20 139.4 7.0 79 41-134 1-79 (200)
26 PRK05340 UDP-2,3-diacylglucosa 99.5 1.6E-13 3.4E-18 140.7 17.5 224 41-334 1-237 (241)
27 KOG1432 Predicted DNA repair e 99.5 4.4E-13 9.6E-18 138.6 19.8 260 30-331 43-354 (379)
28 cd07388 MPP_Tt1561 Thermus the 99.5 1.3E-12 2.8E-17 132.0 21.9 178 40-258 4-189 (224)
29 cd07400 MPP_YydB Bacillus subt 99.5 1.1E-13 2.4E-18 129.8 12.8 76 43-132 1-80 (144)
30 TIGR01854 lipid_A_lpxH UDP-2,3 99.5 3.5E-13 7.6E-18 137.2 15.4 184 44-261 2-198 (231)
31 COG2908 Uncharacterized protei 99.4 3.5E-13 7.6E-18 134.5 7.3 118 44-183 1-119 (237)
32 TIGR00583 mre11 DNA repair pro 99.4 8.8E-11 1.9E-15 128.4 23.4 53 39-92 2-60 (405)
33 cd07404 MPP_MS158 Microscilla 99.3 6.3E-12 1.4E-16 121.1 10.6 140 43-261 1-150 (166)
34 COG1408 Predicted phosphohydro 99.3 2.2E-11 4.8E-16 127.3 14.3 88 27-134 29-119 (284)
35 PHA02546 47 endonuclease subun 99.3 2E-10 4.4E-15 123.6 21.1 82 41-133 1-89 (340)
36 COG0420 SbcD DNA repair exonuc 99.2 3E-10 6.5E-15 124.5 17.4 83 41-134 1-89 (390)
37 PF14582 Metallophos_3: Metall 99.2 1.8E-10 3.8E-15 113.9 13.5 197 41-262 6-220 (255)
38 cd07397 MPP_DevT Myxococcus xa 99.2 4E-10 8.8E-15 114.5 15.3 181 41-260 1-208 (238)
39 PF12850 Metallophos_2: Calcin 99.2 1.8E-10 3.8E-15 108.8 11.4 60 41-133 1-60 (156)
40 COG2129 Predicted phosphoester 99.2 3.7E-09 8E-14 104.9 19.9 177 40-262 3-189 (226)
41 COG1768 Predicted phosphohydro 99.1 7.6E-10 1.6E-14 105.1 12.6 182 41-261 1-200 (230)
42 cd08165 MPP_MPPE1 human MPPE1 99.1 6.4E-10 1.4E-14 106.6 11.9 82 44-133 1-89 (156)
43 cd07379 MPP_239FB Homo sapiens 99.1 8.3E-10 1.8E-14 102.8 12.3 63 42-133 1-63 (135)
44 TIGR00619 sbcd exonuclease Sbc 99.1 2.1E-09 4.6E-14 111.0 16.4 83 41-134 1-89 (253)
45 KOG3770 Acid sphingomyelinase 99.1 2.9E-09 6.3E-14 118.1 17.1 208 40-262 138-406 (577)
46 cd07384 MPP_Cdc1_like Saccharo 99.0 1.4E-09 2.9E-14 105.9 11.2 84 44-133 1-100 (171)
47 PRK10966 exonuclease subunit S 99.0 1.9E-08 4.1E-13 110.7 21.2 83 41-134 1-88 (407)
48 cd08166 MPP_Cdc1_like_1 unchar 99.0 4.9E-09 1.1E-13 103.4 12.6 137 44-261 1-148 (195)
49 TIGR00040 yfcE phosphoesterase 99.0 2.2E-08 4.9E-13 95.7 16.8 63 41-133 1-64 (158)
50 cd00845 MPP_UshA_N_like Escher 98.9 3.6E-08 7.9E-13 101.3 17.2 192 41-261 1-207 (252)
51 cd07398 MPP_YbbF-LpxH Escheric 98.9 3.3E-09 7.2E-14 106.2 7.6 117 44-181 1-119 (217)
52 cd00841 MPP_YfcE Escherichia c 98.9 2.4E-08 5.1E-13 94.9 12.6 59 42-133 1-59 (155)
53 cd00838 MPP_superfamily metall 98.9 1.4E-08 3E-13 91.4 10.2 69 44-131 1-69 (131)
54 cd07410 MPP_CpdB_N Escherichia 98.9 5.7E-08 1.2E-12 101.6 15.9 207 41-261 1-231 (277)
55 cd07394 MPP_Vps29 Homo sapiens 98.8 3.9E-07 8.5E-12 89.3 17.9 65 42-133 1-65 (178)
56 cd07406 MPP_CG11883_N Drosophi 98.7 4.1E-07 8.9E-12 94.3 15.3 191 41-261 1-208 (257)
57 cd08164 MPP_Ted1 Saccharomyces 98.7 1.7E-07 3.7E-12 92.4 11.2 66 61-133 31-111 (193)
58 cd07403 MPP_TTHA0053 Thermus t 98.6 2.6E-07 5.7E-12 85.6 9.7 26 237-262 80-105 (129)
59 cd07408 MPP_SA0022_N Staphyloc 98.6 2.6E-06 5.7E-11 88.2 17.5 199 41-261 1-214 (257)
60 cd07411 MPP_SoxB_N Thermus the 98.5 6.9E-06 1.5E-10 85.4 20.3 192 41-261 1-220 (264)
61 PRK09419 bifunctional 2',3'-cy 98.4 1.3E-05 2.9E-10 99.4 20.5 213 27-261 641-883 (1163)
62 cd07412 MPP_YhcR_N Bacillus su 98.4 2.1E-05 4.5E-10 83.0 18.4 202 41-261 1-242 (288)
63 PRK09453 phosphodiesterase; Pr 98.3 1.9E-06 4E-11 84.5 8.1 76 41-133 1-76 (182)
64 KOG3662 Cell division control 98.3 9.6E-06 2.1E-10 87.8 13.6 88 38-133 46-144 (410)
65 cd07391 MPP_PF1019 Pyrococcus 98.2 1.3E-06 2.9E-11 84.8 5.3 77 44-133 1-88 (172)
66 cd07409 MPP_CD73_N CD73 ecto-5 98.2 4.4E-05 9.6E-10 80.2 16.8 191 41-261 1-219 (281)
67 COG0622 Predicted phosphoester 98.2 5.2E-05 1.1E-09 73.8 16.0 64 40-133 1-65 (172)
68 COG4186 Predicted phosphoester 98.2 4.8E-05 1E-09 71.4 14.0 75 42-134 5-87 (186)
69 cd07386 MPP_DNA_pol_II_small_a 98.1 6.1E-06 1.3E-10 84.7 8.4 84 44-134 2-95 (243)
70 KOG2310 DNA repair exonuclease 98.1 0.00017 3.7E-09 79.4 17.9 54 38-92 11-70 (646)
71 TIGR00024 SbcD_rel_arch putati 98.1 5.2E-06 1.1E-10 84.4 5.8 77 41-133 15-102 (225)
72 PRK09558 ushA bifunctional UDP 98.0 0.00026 5.6E-09 81.4 19.6 199 40-261 34-258 (551)
73 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.0 0.00039 8.4E-09 72.3 18.3 190 43-262 1-230 (262)
74 PHA02239 putative protein phos 98.0 1.8E-05 3.8E-10 81.0 7.5 72 41-133 1-73 (235)
75 PRK04036 DNA polymerase II sma 98.0 3.1E-05 6.8E-10 87.7 10.2 91 40-134 243-344 (504)
76 PF09423 PhoD: PhoD-like phosp 97.9 0.00012 2.5E-09 82.2 13.7 208 38-262 103-379 (453)
77 cd07405 MPP_UshA_N Escherichia 97.9 0.00059 1.3E-08 71.9 17.9 203 41-262 1-223 (285)
78 cd07390 MPP_AQ1575 Aquifex aeo 97.9 2.1E-05 4.6E-10 76.1 6.5 70 44-133 2-82 (168)
79 COG1311 HYS2 Archaeal DNA poly 97.9 0.00011 2.4E-09 80.6 12.2 90 38-134 223-322 (481)
80 COG1407 Predicted ICC-like pho 97.8 3.9E-05 8.5E-10 77.6 6.7 82 40-133 19-110 (235)
81 PRK00166 apaH diadenosine tetr 97.7 7.2E-05 1.6E-09 78.3 6.8 68 41-133 1-69 (275)
82 PRK09419 bifunctional 2',3'-cy 97.7 0.001 2.2E-08 83.0 17.5 207 40-261 41-281 (1163)
83 COG0737 UshA 5'-nucleotidase/2 97.7 0.0012 2.7E-08 75.3 16.8 201 39-261 25-248 (517)
84 cd07407 MPP_YHR202W_N Saccharo 97.6 0.0015 3.2E-08 68.8 16.0 201 37-261 2-232 (282)
85 cd07424 MPP_PrpA_PrpB PrpA and 97.6 9.8E-05 2.1E-09 74.0 6.8 65 42-133 2-67 (207)
86 cd07425 MPP_Shelphs Shewanella 97.4 0.00026 5.6E-09 71.2 6.8 73 44-134 1-81 (208)
87 PRK11439 pphA serine/threonine 97.4 0.00019 4.1E-09 72.6 5.9 65 42-133 18-83 (218)
88 TIGR01530 nadN NAD pyrophospha 97.4 0.0034 7.3E-08 72.2 16.3 192 41-262 1-220 (550)
89 cd07423 MPP_PrpE Bacillus subt 97.4 0.00026 5.7E-09 72.3 6.3 70 41-133 1-80 (234)
90 PRK09420 cpdB bifunctional 2', 97.4 0.0093 2E-07 69.8 19.3 202 40-261 25-264 (649)
91 TIGR01390 CycNucDiestase 2',3' 97.3 0.0065 1.4E-07 70.9 17.6 204 40-261 2-241 (626)
92 cd07422 MPP_ApaH Escherichia c 97.3 0.00038 8.2E-09 72.2 6.5 65 44-133 2-67 (257)
93 PRK09968 serine/threonine-spec 97.3 0.00036 7.8E-09 70.6 6.1 65 42-133 16-81 (218)
94 PRK13625 bis(5'-nucleosyl)-tet 97.3 0.00037 8.1E-09 71.8 6.3 70 41-133 1-79 (245)
95 cd00144 MPP_PPP_family phospho 97.3 0.00045 9.8E-09 69.5 6.7 68 45-134 2-69 (225)
96 PRK09418 bifunctional 2',3'-cy 97.3 0.02 4.4E-07 68.0 21.0 91 169-262 199-291 (780)
97 cd08162 MPP_PhoA_N Synechococc 97.3 0.013 2.9E-07 62.6 17.6 48 41-89 1-53 (313)
98 cd07413 MPP_PA3087 Pseudomonas 97.2 0.00077 1.7E-08 68.4 6.6 67 44-133 2-76 (222)
99 PRK11907 bifunctional 2',3'-cy 97.1 0.011 2.3E-07 70.6 16.3 204 40-261 115-355 (814)
100 TIGR00668 apaH bis(5'-nucleosy 97.0 0.0011 2.3E-08 69.3 6.3 68 41-133 1-69 (279)
101 cd07382 MPP_DR1281 Deinococcus 97.0 0.025 5.3E-07 58.7 16.2 176 42-262 1-180 (255)
102 cd07421 MPP_Rhilphs Rhilph pho 96.9 0.0027 5.9E-08 66.6 7.5 71 42-132 3-79 (304)
103 TIGR00282 metallophosphoestera 96.8 0.045 9.7E-07 57.1 15.6 178 41-262 1-183 (266)
104 KOG0701 dsRNA-specific nucleas 96.2 2.8E-05 6.2E-10 95.9 -13.9 285 344-643 13-302 (1606)
105 cd07387 MPP_PolD2_C PolD2 (DNA 96.2 0.021 4.5E-07 59.2 8.8 151 42-208 1-175 (257)
106 smart00156 PP2Ac Protein phosp 96.1 0.014 2.9E-07 61.2 7.0 72 42-134 29-100 (271)
107 PF04042 DNA_pol_E_B: DNA poly 95.9 0.01 2.2E-07 59.3 5.0 89 43-135 1-93 (209)
108 cd07416 MPP_PP2B PP2B, metallo 95.7 0.023 5E-07 60.5 7.0 71 42-133 44-114 (305)
109 cd07420 MPP_RdgC Drosophila me 95.7 0.02 4.3E-07 61.3 6.5 73 42-135 52-125 (321)
110 cd07381 MPP_CapA CapA and rela 95.5 0.22 4.8E-06 50.8 13.1 98 162-262 123-221 (239)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.4 0.031 6.7E-07 59.0 6.5 72 42-134 43-114 (285)
112 PF03404 Mo-co_dimer: Mo-co ox 95.4 0.011 2.4E-07 55.0 2.8 76 377-457 30-109 (131)
113 cd07414 MPP_PP1_PPKL PP1, PPKL 95.2 0.037 8E-07 58.6 6.5 72 42-134 51-122 (293)
114 cd07418 MPP_PP7 PP7, metalloph 95.1 0.047 1E-06 59.6 6.9 72 42-134 67-139 (377)
115 PTZ00244 serine/threonine-prot 95.0 0.041 8.9E-07 58.3 6.1 71 43-134 54-124 (294)
116 PTZ00239 serine/threonine prot 94.9 0.058 1.3E-06 57.3 6.7 71 43-134 45-115 (303)
117 PTZ00480 serine/threonine-prot 94.8 0.068 1.5E-06 57.2 6.9 72 42-134 60-131 (320)
118 PTZ00235 DNA polymerase epsilo 94.6 0.23 4.9E-06 52.1 10.0 103 27-134 15-123 (291)
119 cd07417 MPP_PP5_C PP5, C-termi 94.4 0.073 1.6E-06 57.0 6.2 72 41-133 60-132 (316)
120 cd07419 MPP_Bsu1_C Arabidopsis 94.4 0.1 2.2E-06 55.9 7.1 69 43-133 50-127 (311)
121 KOG4419 5' nucleotidase [Nucle 94.3 0.58 1.3E-05 53.2 12.9 55 199-261 213-270 (602)
122 cd02114 bact_SorA_Moco sulfite 93.3 0.24 5.3E-06 54.1 7.9 68 377-456 278-347 (367)
123 cd02110 SO_family_Moco_dimer S 93.2 0.13 2.8E-06 55.1 5.4 69 377-457 226-296 (317)
124 cd07380 MPP_CWF19_N Schizosacc 93.0 0.39 8.5E-06 45.8 7.8 45 72-131 24-68 (150)
125 cd02112 eukary_NR_Moco molybdo 92.8 0.19 4E-06 55.3 6.0 76 377-457 289-367 (386)
126 COG3540 PhoD Phosphodiesterase 91.4 1.3 2.8E-05 49.3 10.2 186 68-261 162-419 (522)
127 smart00854 PGA_cap Bacterial c 91.3 1.4 3E-05 45.1 10.1 97 163-262 120-219 (239)
128 PLN00177 sulfite oxidase; Prov 90.6 0.57 1.2E-05 51.7 6.8 74 377-457 285-365 (393)
129 cd02111 eukary_SO_Moco molybdo 89.1 0.73 1.6E-05 50.4 6.1 74 377-457 265-342 (365)
130 cd07389 MPP_PhoD Bacillus subt 89.1 2.8 6E-05 42.2 10.0 60 71-135 26-104 (228)
131 cd02113 bact_SoxC_Moco bacteri 89.1 0.61 1.3E-05 50.2 5.4 68 377-457 228-297 (326)
132 PF09587 PGA_cap: Bacterial ca 88.6 3.8 8.1E-05 42.2 10.7 98 162-262 121-230 (250)
133 PF13754 Big_3_4: Bacterial Ig 88.3 0.97 2.1E-05 35.3 4.7 42 422-468 12-53 (54)
134 COG5555 Cytolysin, a secreted 87.0 0.86 1.9E-05 47.4 4.6 60 199-261 254-335 (392)
135 COG1692 Calcineurin-like phosp 84.5 24 0.00051 36.4 13.4 177 41-261 1-181 (266)
136 KOG2863 RNA lariat debranching 83.5 7.3 0.00016 42.0 9.6 24 238-261 208-231 (456)
137 PLN02252 nitrate reductase [NA 82.0 2.1 4.6E-05 52.2 5.8 74 377-455 361-437 (888)
138 KOG0374 Serine/threonine speci 79.6 2.8 6.1E-05 45.2 5.2 74 42-136 60-134 (331)
139 PF12245 Big_3_2: Bacterial Ig 76.8 6.3 0.00014 31.4 5.2 37 429-468 16-52 (60)
140 PF13750 Big_3_3: Bacterial Ig 74.9 4.9 0.00011 38.7 4.9 47 424-473 3-51 (158)
141 PF13750 Big_3_3: Bacterial Ig 74.6 63 0.0014 31.0 12.4 81 377-467 68-150 (158)
142 KOG3818 DNA polymerase epsilon 74.3 7 0.00015 43.2 6.3 88 41-134 283-370 (525)
143 PF13277 YmdB: YmdB-like prote 73.8 1.2E+02 0.0025 31.7 14.6 160 61-261 14-177 (253)
144 KOG3947 Phosphoesterases [Gene 62.8 19 0.00041 37.7 6.3 67 39-133 60-126 (305)
145 PF15418 DUF4625: Domain of un 62.8 49 0.0011 30.9 8.6 83 377-464 39-131 (132)
146 cd07390 MPP_AQ1575 Aquifex aeo 61.0 9.8 0.00021 36.6 3.9 33 218-262 107-139 (168)
147 cd02848 Chitinase_N_term Chiti 58.7 71 0.0015 28.7 8.4 61 378-457 38-98 (106)
148 KOG0372 Serine/threonine speci 55.7 22 0.00047 36.7 5.2 71 43-135 45-116 (303)
149 PF13290 CHB_HEX_C_1: Chitobia 53.3 50 0.0011 27.0 6.2 54 378-455 10-63 (67)
150 KOG0373 Serine/threonine speci 43.6 40 0.00087 34.1 4.9 71 43-135 48-119 (306)
151 KOG0371 Serine/threonine prote 42.0 53 0.0011 34.2 5.6 71 42-134 61-132 (319)
152 KOG3325 Membrane coat complex 41.3 27 0.00059 33.2 3.2 65 42-133 2-66 (183)
153 PF05297 Herpes_LMP1: Herpesvi 33.7 14 0.0003 38.6 0.0 27 544-570 103-131 (381)
154 PF08632 Zds_C: Activator of m 32.3 23 0.00049 27.2 0.9 13 623-635 14-26 (53)
155 PRK09453 phosphodiesterase; Pr 31.8 64 0.0014 31.2 4.4 34 219-261 98-131 (182)
156 PF06874 FBPase_2: Firmicute f 31.5 49 0.0011 38.5 3.8 55 59-132 169-223 (640)
157 KOG2476 Uncharacterized conser 31.2 1.2E+02 0.0026 34.1 6.5 70 41-131 6-76 (528)
158 cd07425 MPP_Shelphs Shewanella 29.5 39 0.00085 33.8 2.5 24 239-262 158-181 (208)
159 TIGR03707 PPK2_P_aer polyphosp 29.4 71 0.0015 32.7 4.3 37 97-133 172-208 (230)
160 KOG0375 Serine-threonine phosp 28.2 81 0.0018 34.3 4.5 69 43-134 90-160 (517)
161 cd04502 SGNH_hydrolase_like_7 25.0 3.3E+02 0.0072 25.4 8.0 57 60-126 36-95 (171)
162 PF10161 DDDD: Putative mitoch 23.4 65 0.0014 27.3 2.2 37 595-631 28-64 (79)
163 TIGR01769 GGGP geranylgeranylg 23.4 1.8E+02 0.0039 29.2 5.9 66 50-133 1-66 (205)
164 PF07495 Y_Y_Y: Y_Y_Y domain; 22.5 1.1E+02 0.0024 23.9 3.5 24 431-457 34-57 (66)
165 TIGR03709 PPK2_rel_1 polyphosp 21.8 1.2E+02 0.0026 31.8 4.4 37 97-133 197-233 (264)
166 smart00736 CADG Dystroglycan-t 20.7 1.3E+02 0.0029 25.9 3.9 30 430-465 61-90 (97)
167 PF07172 GRP: Glycine rich pro 20.5 46 0.001 29.3 0.9 6 5-10 7-12 (95)
168 PF02468 PsbN: Photosystem II 20.5 54 0.0012 24.6 1.1 17 546-562 14-30 (43)
No 1
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.98 E-value=4e-31 Score=272.81 Aligned_cols=210 Identities=35% Similarity=0.614 Sum_probs=155.8
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
+|+||||+|++...++......+.+.+.+++.+||+++++||++|..........|.+.+|+.|.+.+.+.. .+...
T Consensus 1 ~~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 77 (256)
T cd07401 1 WFVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESS---VINKE 77 (256)
T ss_pred CEEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhC---CCCcc
Confidence 589999999998875543333233446778899999999999999876544344566778877766665532 23457
Q ss_pred eEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHH
Q 006340 122 IFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLT 201 (649)
Q Consensus 122 p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~ 201 (649)
|++.++||||.++.++.++..++|++|+... ..... .+...+..++++||++|+...++.++|+.+.|.++++|++
T Consensus 78 p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~---~~~~~-~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 78 KWFDIRGNHDLFNIPSLDSENNYYRKYSATG---RDGSF-SFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eEEEeCCCCCcCCCCCccchhhHHHHhheec---CCCcc-ceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 9999999999998877777778888886321 11111 2334343568999999999887777777788999999999
Q ss_pred HHHHHHhcccccCCCCceEEEEEecCCCccC--CCCchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 202 EIDSELSQWNSQSTKPVTKITFGHFPVSFSA--SSHSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 202 wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~--~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
||+++|++.+ +.+++|+++|+|+.... ...+..++.+++++++++++||||+|..+.
T Consensus 154 wL~~~L~~~~----~~~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 154 RLEKELEKST----NSNYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred HHHHHHHhcc----cCCeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 9999998754 23489999999985311 122334599999999999999999998873
No 2
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.92 E-value=9.1e-24 Score=218.47 Aligned_cols=197 Identities=18% Similarity=0.240 Sum_probs=132.1
Q ss_pred CCceEEEEEcCCCCCCCC-C---------CcHHHHHHHHHHHHhcc--CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHH
Q 006340 38 EHVIWAVQLSDLHFSVHH-P---------DRASDFKRIVGPALSMI--SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEY 105 (649)
Q Consensus 38 ~~~~~fv~ISDlHls~~~-~---------~~~~~l~~~i~~~l~~~--kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y 105 (649)
++.++|+|+||+|++... . +....+++++ +.+++. +||+|+++|||++++..... .+.+|+.+
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~~~pd~ii~~GDl~~~~~~~~~----~~~~~~~~ 76 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAV-QAINKLNPKPKFVVVCGDLVNAMPGDEL----RERQVSDL 76 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHH-HHHHhcCCCCCEEEEeCCcCCCCcchhh----HHHHHHHH
Confidence 367999999999999532 1 1123467777 445555 99999999999998765321 12346666
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCC
Q 006340 106 QNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGL 185 (649)
Q Consensus 106 ~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~ 185 (649)
++.++++. .++|++.++||||..+.+.. +.+.+|. ..++. . .+.+.. ++++||++|+.....+
T Consensus 77 ~~~~~~~~-----~~vp~~~i~GNHD~~~~~~~----~~~~~f~--~~~g~---~-~y~~~~--~~~~~i~lds~~~~~~ 139 (262)
T cd07395 77 KDVLSLLD-----PDIPLVCVCGNHDVGNTPTE----ESIKDYR--DVFGD---D-YFSFWV--GGVFFIVLNSQLFFDP 139 (262)
T ss_pred HHHHhhcc-----CCCcEEEeCCCCCCCCCCCh----hHHHHHH--HHhCC---c-ceEEEE--CCEEEEEeccccccCc
Confidence 66666542 24799999999998653221 2222221 11111 1 133443 4689999998764321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC----------CCchhHHHHHHHhCCceEEEeC
Q 006340 186 RGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS----------SHSGRSLQDIFLKHSLSAYLCG 255 (649)
Q Consensus 186 ~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~----------~~~~~~l~~ll~~~~v~l~L~G 255 (649)
. ..+.+..+|++||+++|++.++ .+.+++|+++|+|+..... .+++.++.+++++++|+++|||
T Consensus 140 ~----~~~~~~~~ql~WL~~~L~~~~~--~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 140 S----EVPELAQAQDVWLEEQLEIAKE--SDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred c----ccccchHHHHHHHHHHHHHHHh--ccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEEC
Confidence 1 2346789999999999998742 1335899999999863111 1245679999999999999999
Q ss_pred cccCCCC
Q 006340 256 HLHTRFG 262 (649)
Q Consensus 256 HtH~~~g 262 (649)
|+|....
T Consensus 214 H~H~~~~ 220 (262)
T cd07395 214 HYHRNAG 220 (262)
T ss_pred ccccCCc
Confidence 9998864
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.90 E-value=2.5e-22 Score=209.54 Aligned_cols=190 Identities=20% Similarity=0.335 Sum_probs=123.9
Q ss_pred EEeCCCCCCceEEEEEcCCCCCCCCC------CcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHH
Q 006340 31 IQLREGPEHVIWAVQLSDLHFSVHHP------DRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWM 103 (649)
Q Consensus 31 ~~~~~~p~~~~~fv~ISDlHls~~~~------~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~ 103 (649)
+.+++..++.|+|+||||+|+..... +....|++++++..+ ..+||+||++|||++++..+
T Consensus 5 ~~~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~------------ 72 (275)
T PRK11148 5 LTLPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSE------------ 72 (275)
T ss_pred cccccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHH------------
Confidence 34455555779999999999865321 224568888844333 24799999999999976531
Q ss_pred HHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCcc
Q 006340 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSV 183 (649)
Q Consensus 104 ~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~p 183 (649)
.|+.+.+.+.+ + +.|+|.++||||... ...+++.+. ... . ...+ ..++++.||++|+...
T Consensus 73 ~~~~~~~~l~~---l-~~Pv~~v~GNHD~~~-----~~~~~~~~~----~~~---~--~~~~-~~~~~~~~i~Lds~~~- 132 (275)
T PRK11148 73 AYQHFAEGIAP---L-RKPCVWLPGNHDFQP-----AMYSALQDA----GIS---P--AKHV-LIGEHWQILLLDSQVF- 132 (275)
T ss_pred HHHHHHHHHhh---c-CCcEEEeCCCCCChH-----HHHHHHhhc----CCC---c--cceE-EecCCEEEEEecCCCC-
Confidence 24455555543 3 369999999999842 111222111 011 0 1111 2234688999998753
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCcc------CCCCchhHHHHHHHhC-CceEEEeCc
Q 006340 184 GLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFS------ASSHSGRSLQDIFLKH-SLSAYLCGH 256 (649)
Q Consensus 184 G~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~------~~~~~~~~l~~ll~~~-~v~l~L~GH 256 (649)
|. ..|.++++|++||+++|++.+ +...+|++.|+|+... ....+++++.++++++ +++++||||
T Consensus 133 g~-----~~G~l~~~ql~wL~~~L~~~~----~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH 203 (275)
T PRK11148 133 GV-----PHGELSEYQLEWLERKLADAP----ERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGH 203 (275)
T ss_pred CC-----cCCEeCHHHHHHHHHHHhhCC----CCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecc
Confidence 31 357899999999999998764 2223444555565421 1234667999999998 699999999
Q ss_pred ccCCC
Q 006340 257 LHTRF 261 (649)
Q Consensus 257 tH~~~ 261 (649)
+|...
T Consensus 204 ~H~~~ 208 (275)
T PRK11148 204 IHQEL 208 (275)
T ss_pred cChHH
Confidence 99865
No 4
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.87 E-value=3e-21 Score=196.50 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCCCCC------CcHHHHHHHHHHHHhcc--CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 006340 42 WAVQLSDLHFSVHHP------DRASDFKRIVGPALSMI--SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 42 ~fv~ISDlHls~~~~------~~~~~l~~~i~~~l~~~--kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
||+||||+|++...+ +....+++++ +.+++. +||+|+++|||++.+..+ +|+ .+.+.+.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~~~~d~vi~~GDl~~~~~~~---------~~~---~~~~~l~ 67 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVL-AHINALHPRPDLVLVTGDLTDDGSPE---------SYE---RLRELLA 67 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHH-HHHHhcCCCCCEEEECccCCCCCCHH---------HHH---HHHHHHh
Confidence 699999999997532 3345688888 445555 999999999999986531 233 3333333
Q ss_pred HhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCC
Q 006340 114 KRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFG 193 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G 193 (649)
+ + ++|++.++||||... ....++.+. . ...+.. .+.+ ..++++||++|+.... ...|
T Consensus 68 ~---~-~~p~~~v~GNHD~~~-----~~~~~~~~~---~--~~~~~~-~~~~--~~~~~~~i~lds~~~~------~~~~ 124 (240)
T cd07402 68 A---L-PIPVYLLPGNHDDRA-----AMRAVFPEL---P--PAPGFV-QYVV--DLGGWRLILLDSSVPG------QHGG 124 (240)
T ss_pred h---c-CCCEEEeCCCCCCHH-----HHHHhhccc---c--cccccc-ceeE--ecCCEEEEEEeCCCCC------CcCC
Confidence 3 2 469999999999853 111122211 0 001111 2333 4457999999986532 1346
Q ss_pred CCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccC-------CCCchhHHHHHHHhC-CceEEEeCcccCCCC
Q 006340 194 HPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA-------SSHSGRSLQDIFLKH-SLSAYLCGHLHTRFG 262 (649)
Q Consensus 194 ~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~-------~~~~~~~l~~ll~~~-~v~l~L~GHtH~~~g 262 (649)
.++++|++||+++|++.+ .+++|+++|+|+.... ...+.+++.++++++ ++++++|||+|....
T Consensus 125 ~~~~~ql~wL~~~L~~~~-----~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~ 196 (240)
T cd07402 125 ELCAAQLDWLEAALAEAP-----DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPID 196 (240)
T ss_pred EECHHHHHHHHHHHHhCC-----CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHH
Confidence 789999999999999753 2478999999875321 123467899999999 899999999998753
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.86 E-value=1.2e-20 Score=195.92 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCCCCC-------CcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP-------DRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~-------~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
|||+||||+|+..... +....+++++ +.+++.+||+||++|||++.+..+ .+++|+...+.+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i-~~i~~~~~d~vv~~GDlv~~~~~~------~~~~~~~~~~~l~~-- 71 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAV-EEWNRESLDFVVQLGDIIDGDNAR------AEEALDAVLAILDR-- 71 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHH-HHHHcCCCCEEEECCCeecCCCch------HHHHHHHHHHHHHh--
Confidence 6999999999776421 1235677877 456677899999999999877532 12334444444433
Q ss_pred HhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCC-------
Q 006340 114 KRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLR------- 186 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~------- 186 (649)
+ +.|++.++||||..+.. ..++.... . ...+.. .+.+ ..++++||.+|+....-..
T Consensus 72 ----l-~~p~~~v~GNHD~~~~~-----~~~~~~~~--~--~~~~~~-yysf--~~~~~~~i~lds~~~~~~~~~~~~~~ 134 (267)
T cd07396 72 ----L-KGPVHHVLGNHDLYNPS-----REYLLLYT--L--LGLGAP-YYSF--SPGGIRFIVLDGYDISALGRPEDTPK 134 (267)
T ss_pred ----c-CCCEEEecCcccccccc-----Hhhhhccc--c--cCCCCc-eEEE--ecCCcEEEEEeCCccccccCCCCChh
Confidence 2 36999999999997521 11111000 0 011111 1333 3457899999985421100
Q ss_pred -----------------CCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccC-----CCCchhHHHHHH
Q 006340 187 -----------------GPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA-----SSHSGRSLQDIF 244 (649)
Q Consensus 187 -----------------~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~-----~~~~~~~l~~ll 244 (649)
.+..+.|.++++|++||+++|++.+. +..++|+++|+|+.... ...+.+.+.+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~---~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll 211 (267)
T cd07396 135 AENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA---NGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSIL 211 (267)
T ss_pred hhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh---cCCeEEEEEeccCCCCCCCccccccCHHHHHHHH
Confidence 01124688999999999999997642 23579999999975322 123467899999
Q ss_pred HhC-CceEEEeCcccCCCC
Q 006340 245 LKH-SLSAYLCGHLHTRFG 262 (649)
Q Consensus 245 ~~~-~v~l~L~GHtH~~~g 262 (649)
+++ +++++||||+|....
T Consensus 212 ~~~~~V~~v~~GH~H~~~~ 230 (267)
T cd07396 212 RAYGCVKACISGHDHEGGY 230 (267)
T ss_pred HhCCCEEEEEcCCcCCCCc
Confidence 996 699999999998863
No 6
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.86 E-value=2.9e-20 Score=195.17 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=151.9
Q ss_pred CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 006340 39 HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGL 118 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l 118 (649)
+.++|++++|+|.... ...+.++++. +. ..+||+|+++|||+++.... .+.+|+.|.+.++.+..
T Consensus 3 ~~~~f~v~gD~~~~~~--~~~~~~~~l~-~~--~~~~d~vl~~GDl~~~~~~~------~~~~~~~~~~~~~~~~~---- 67 (294)
T cd00839 3 TPFKFAVFGDMGQNTN--NSTNTLDHLE-KE--LGNYDAILHVGDLAYADGYN------NGSRWDTFMRQIEPLAS---- 67 (294)
T ss_pred CcEEEEEEEECCCCCC--CcHHHHHHHH-hc--cCCccEEEEcCchhhhcCCc------cchhHHHHHHHHHHHHh----
Confidence 5699999999997522 2222233333 11 47899999999999765432 12357777777776643
Q ss_pred CCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHH
Q 006340 119 EKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQ 198 (649)
Q Consensus 119 ~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~ 198 (649)
++|++.++||||.............+..+.. ....... .....+.++.++++||++|+.... ..|.+.++
T Consensus 68 -~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~Ysf~~g~v~fi~Lds~~~~-------~~~~~~~~ 137 (294)
T cd00839 68 -YVPYMVTPGNHEADYNFSFYKIKAFFPRFRF-PHSPSGS-TSNLWYSFDVGPVHFVSLSTEVDF-------YGDGPGSP 137 (294)
T ss_pred -cCCcEEcCcccccccCCCCcccccccccccc-cCCCCCC-CCCceEEEeeCCEEEEEEeccccc-------ccCCCCcH
Confidence 4699999999998643211100000000000 0000111 112223444567999999986532 14567899
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEEecCCCccCC--------CCchhHHHHHHHhCCceEEEeCcccCCCCCccceeee
Q 006340 199 LLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS--------SHSGRSLQDIFLKHSLSAYLCGHLHTRFGKNLKRHHY 270 (649)
Q Consensus 199 qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~--------~~~~~~l~~ll~~~~v~l~L~GHtH~~~g~~l~~~h~ 270 (649)
|++||+++|++.++. +..++|+++|+|+..... ...++.|.+++++++++++||||+|..+.. .++-.
T Consensus 138 q~~WL~~~L~~~~~~--~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~--~p~~~ 213 (294)
T cd00839 138 QYDWLEADLAKVDRS--KTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERT--CPVYN 213 (294)
T ss_pred HHHHHHHHHHHhccc--CCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEee--chhhC
Confidence 999999999976521 224799999999875221 233467889999999999999999988731 11100
Q ss_pred ccccccccccccCCccccccCCcccccCCCCCCCc-cceeeecccccccceEEEEEcCC-EEEEEEEe
Q 006340 271 MDHNFLSQKFFQSNMHQIPLGSTKNCSSGAPSIGE-FWEWEMGDWRKSRAMRILAIDRG-HISYVDID 336 (649)
Q Consensus 271 ~~~~~~~G~~~~~~~~~~~~~~~~~cs~~~~~~~g-~~ele~~dw~~~r~yrvl~iD~~-~~sf~d~~ 336 (649)
...--.+..+..++-..++..+..+|......... ..++.... ....+|.++.+.++ .+.++.++
T Consensus 214 ~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~t~l~~~~~~ 280 (294)
T cd00839 214 GTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFR-ESDYGFGRLTVHNSTHLHFEWIR 280 (294)
T ss_pred CEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEE-eccCCEEEEEEEecCeEEEEEEE
Confidence 00000001111222223333334444332211010 01222111 24579999999876 88886554
No 7
>PLN02533 probable purple acid phosphatase
Probab=99.81 E-value=2.1e-18 Score=190.17 Aligned_cols=188 Identities=15% Similarity=0.182 Sum_probs=124.2
Q ss_pred CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 006340 39 HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGL 118 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l 118 (649)
..++|++++|+|.+... ++.+ +.+++.+||+|+++|||+++... +..|+.+.+.++.+..
T Consensus 138 ~~~~f~v~GDlG~~~~~-------~~tl-~~i~~~~pD~vl~~GDl~y~~~~--------~~~wd~f~~~i~~l~s---- 197 (427)
T PLN02533 138 FPIKFAVSGDLGTSEWT-------KSTL-EHVSKWDYDVFILPGDLSYANFY--------QPLWDTFGRLVQPLAS---- 197 (427)
T ss_pred CCeEEEEEEeCCCCccc-------HHHH-HHHHhcCCCEEEEcCccccccch--------HHHHHHHHHHhhhHhh----
Confidence 46999999999854321 2344 33456799999999999986532 2358778777777643
Q ss_pred CCceEEEecCCCCCCCCCCCCCchhhhcccccccccCC--CCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCC
Q 006340 119 EKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGR--KQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPA 196 (649)
Q Consensus 119 ~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~--~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~ 196 (649)
..|++.++||||....+.. ..+.|..|...-.+.. .+......++++.++++||.+|+.... ...
T Consensus 198 -~~P~m~~~GNHE~~~~~~~--~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~----------~~~ 264 (427)
T PLN02533 198 -QRPWMVTHGNHELEKIPIL--HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDF----------EPG 264 (427)
T ss_pred -cCceEEeCccccccccccc--cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccc----------cCc
Confidence 4699999999998753321 0111222210000010 011112234455677999999986421 245
Q ss_pred HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCC--------CchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 197 DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASS--------HSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 197 ~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~--------~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
.+|++||+++|++.++ ++..++|+++|+|+.+.... ..++.+.++|.+++|+++||||.|..+
T Consensus 265 ~~Q~~WLe~dL~~~~r--~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 265 SEQYQWLENNLKKIDR--KTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred hHHHHHHHHHHHhhcc--cCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceeccc
Confidence 7899999999997652 12347999999998753211 123478899999999999999999887
No 8
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.81 E-value=2.4e-18 Score=179.24 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHH-HHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEW-MEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW-~~Y~~vl~~L~~~~~l~ 119 (649)
++|+.++|.-.+.. . ....+.+.+.+.+++.+|||||++||++.+...... + ..+| +.|+++++.+. .
T Consensus 1 ~~f~~~gD~g~~~~-~-~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~---~-~~~~~~~~~~~~~~~~-----~ 69 (277)
T cd07378 1 LRFLALGDWGGGGT-A-GQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSV---D-DPRFETTFEDVYSAPS-----L 69 (277)
T ss_pred CeEEEEeecCCCCC-H-HHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCC---c-chHHHHHHHHHccchh-----h
Confidence 47999999986521 1 113455555455566899999999999744322110 0 1223 34666555442 2
Q ss_pred CceEEEecCCCCCCCCCCCCCchhhhcc-cccccccCCCCccceEEEEeC----CeeEEEEEecCCCccCCCCC-----C
Q 006340 120 KSIFYDIRGNHDNFGVPIVGGSFDFFSK-HSINGQLGRKQNVNSVTVQIG----DEKHLFVGFDSTMSVGLRGP-----T 189 (649)
Q Consensus 120 ~~p~~~I~GNHD~~~v~~~~~~~~~~~~-ys~~~~l~~~~~~~~~~~~~~----~g~~~fIglD~~~~pG~~~p-----~ 189 (649)
++|+|.++||||..+... ....+... +. ........ .|.+..+ +++++||++|+........+ .
T Consensus 70 ~~P~~~v~GNHD~~~~~~--~~~~~~~~~~~--~~~~~~~~--~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~ 143 (277)
T cd07378 70 QVPWYLVLGNHDYSGNVS--AQIDYTKRPNS--PRWTMPAY--YYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYG 143 (277)
T ss_pred cCCeEEecCCcccCCCch--heeehhccCCC--CCccCcch--heEEEeecCCCCCEEEEEEEeChhHcCcccccccccc
Confidence 469999999999864211 11111111 01 11111111 2445444 34799999999865321110 0
Q ss_pred CCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCC----CchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 190 NLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASS----HSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 190 ~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~----~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
...|.+.++|++||+++|++.+ .+++|+++|+|+...... ..+..+.+++++++++++||||+|..+.
T Consensus 144 ~~~~~~~~~Q~~wL~~~L~~~~-----~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~ 215 (277)
T cd07378 144 PPNGKLAEEQLAWLEKTLAAST-----ADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQH 215 (277)
T ss_pred CcchhhHHHHHHHHHHHHHhcC-----CCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCccccee
Confidence 2356788999999999998753 258999999998642211 2346788999999999999999998863
No 9
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.81 E-value=9.4e-19 Score=176.08 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHH---HHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVG---PALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSG 117 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~---~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~ 117 (649)
|+|+++||+|..... ..+.+++.++ +.+++.+||+|+++||+++.+... .+|+.+.++++.+.+
T Consensus 1 f~~~~~~D~q~~~~~--~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~--------~~~~~~~~~~~~l~~--- 67 (214)
T cd07399 1 FTLAVLPDTQYYTES--YPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDND--------AEWEAADKAFARLDK--- 67 (214)
T ss_pred CEEEEecCCCcCCcC--CHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCH--------HHHHHHHHHHHHHHH---
Confidence 689999999987643 2223433332 334557899999999999987631 247777778887753
Q ss_pred CCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCH
Q 006340 118 LEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPAD 197 (649)
Q Consensus 118 l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~ 197 (649)
.+.|++.++||||.. +.+|. ..++
T Consensus 68 -~~~p~~~~~GNHD~~-----------------------------------------~~ld~--------------~~~~ 91 (214)
T cd07399 68 -AGIPYSVLAGNHDLV-----------------------------------------LALEF--------------GPRD 91 (214)
T ss_pred -cCCcEEEECCCCcch-----------------------------------------hhCCC--------------CCCH
Confidence 236999999999921 11221 1247
Q ss_pred HHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC----------CCch-hHHHHHHHhC-CceEEEeCcccCCC
Q 006340 198 QLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS----------SHSG-RSLQDIFLKH-SLSAYLCGHLHTRF 261 (649)
Q Consensus 198 ~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~----------~~~~-~~l~~ll~~~-~v~l~L~GHtH~~~ 261 (649)
+|++||+++|++.+ ++++|+++|+|+..... ..++ +.+.++++++ +|+++||||.|...
T Consensus 92 ~ql~WL~~~L~~~~-----~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 92 EVLQWANEVLKKHP-----DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred HHHHHHHHHHHHCC-----CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 89999999998653 35799999999764211 1122 3577999998 59999999999886
No 10
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.78 E-value=2.5e-18 Score=181.14 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcc--CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCC
Q 006340 61 DFKRIVGPALSMI--SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIV 138 (649)
Q Consensus 61 ~l~~~i~~~l~~~--kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~ 138 (649)
-+++++ +.+++. +||+||+|||+++....+.....+.+..++...+.+++ . .+++|++.++||||......+
T Consensus 54 l~~s~l-~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~---~--~~~~pv~~~~GNHD~~p~~~~ 127 (296)
T cd00842 54 LVESAL-EAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKK---A--FPDTPVYPALGNHDSYPVNQF 127 (296)
T ss_pred HHHHHH-HHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHH---h--CCCCCEEEcCCCCCCCccccc
Confidence 466777 445454 89999999999988764321111111023323233333 2 456899999999999754322
Q ss_pred CC---chhhhccccc-ccc-cCCC---C-ccc-eEEEEeCCeeEEEEEecCCCccCCCCCCC-CCCCCCHHHHHHHHHHH
Q 006340 139 GG---SFDFFSKHSI-NGQ-LGRK---Q-NVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTN-LFGHPADQLLTEIDSEL 207 (649)
Q Consensus 139 ~~---~~~~~~~ys~-~~~-l~~~---~-~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~-~~G~l~~~qL~wL~~~L 207 (649)
.. ....|..++. ++. +... . ..+ .|.+.. .+++++|++|+........... ..+....+|++||+++|
T Consensus 128 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~-~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L 206 (296)
T cd00842 128 PPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPV-KPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDEL 206 (296)
T ss_pred CCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEc-CCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHH
Confidence 11 1111211110 000 0000 0 011 233333 5679999999887543221100 12345578999999999
Q ss_pred hcccccCCCCceEEEEEecCCCccCCC---CchhHHHHHHHhCC--ceEEEeCcccCCCC
Q 006340 208 SQWNSQSTKPVTKITFGHFPVSFSASS---HSGRSLQDIFLKHS--LSAYLCGHLHTRFG 262 (649)
Q Consensus 208 ~~~~~~~~~~~~~Ilf~H~P~~~~~~~---~~~~~l~~ll~~~~--v~l~L~GHtH~~~g 262 (649)
+++++ +...+++++|+|+...... ...+++.+++++|+ +.++|+||+|..+.
T Consensus 207 ~~a~~---~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~ 263 (296)
T cd00842 207 QEAEQ---AGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEF 263 (296)
T ss_pred HHHHH---CCCeEEEEeccCCCCcccccchHHHHHHHHHHHHHHHhhheeeecccccceE
Confidence 98763 2357899999998753322 35578999999997 78999999998874
No 11
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.77 E-value=1.9e-17 Score=180.30 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=97.9
Q ss_pred EEeC-CeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccC-----------
Q 006340 165 VQIG-DEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA----------- 232 (649)
Q Consensus 165 ~~~~-~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~----------- 232 (649)
|+++ .++++||+||++...| .+.|.++++|++||+++|++.+ .+++|+|+|||+....
T Consensus 294 YSFd~~ggvrfIvLDSt~~~G-----~~~G~L~eeQL~WLeqeLa~a~-----~k~VVVf~HHPp~s~g~~~~Dp~~pg~ 363 (496)
T TIGR03767 294 YTFDIAGGVRGISMDTTNRAG-----GDEGSLGQTQFKWIKDTLRASS-----DTLFVLFSHHTSWSMVNELTDPVDPGE 363 (496)
T ss_pred EEEEeECCEEEEEEeCCCcCC-----CcCCccCHHHHHHHHHHHhcCC-----CCCEEEEECCCCccccccccccccccc
Confidence 3344 4569999999986422 2568999999999999998642 3579999999864211
Q ss_pred CCCchhHHHHHHHhC-CceEEEeCcccCCCCCccceeeeccccccccccccCCccccccCCcccccCCCCCCCccceeee
Q 006340 233 SSHSGRSLQDIFLKH-SLSAYLCGHLHTRFGKNLKRHHYMDHNFLSQKFFQSNMHQIPLGSTKNCSSGAPSIGEFWEWEM 311 (649)
Q Consensus 233 ~~~~~~~l~~ll~~~-~v~l~L~GHtH~~~g~~l~~~h~~~~~~~~G~~~~~~~~~~~~~~~~~cs~~~~~~~g~~ele~ 311 (649)
...++++|.++|+++ +|.++||||+|.+... . |...+ +..+.+|+||++.
T Consensus 364 ~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~---~-~~~~~-------------------------~~~p~~gfweI~T 414 (496)
T TIGR03767 364 KRHLGTELVSLLLEHPNVLAWVNGHTHSNKIT---A-HRRVE-------------------------GVGKDKGFWEINT 414 (496)
T ss_pred cccCHHHHHHHHhcCCCceEEEECCcCCCccc---c-ccCCC-------------------------CCCCcCCeEEEec
Confidence 123457899999998 6999999999988631 1 11110 1112358999999
Q ss_pred ccccc-ccceEEEEE---cCCEEEEEEEeecc
Q 006340 312 GDWRK-SRAMRILAI---DRGHISYVDIDFKS 339 (649)
Q Consensus 312 ~dw~~-~r~yrvl~i---D~~~~sf~d~~~~~ 339 (649)
+...+ +..||++.| .++.+|+....++.
T Consensus 415 aSlvdfPq~~Ri~Ei~~n~dgt~si~tt~vd~ 446 (496)
T TIGR03767 415 ASHIDFPQQGRIIELADNQDGTVSIFTTLIES 446 (496)
T ss_pred cccccCCCCceEEEEEeCCCCcEEEEEEeccc
Confidence 88765 668999999 66778887666665
No 12
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.73 E-value=7.1e-17 Score=168.22 Aligned_cols=208 Identities=15% Similarity=0.185 Sum_probs=123.2
Q ss_pred eEEEE-eCCCCCCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHH
Q 006340 28 RRVIQ-LREGPEHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQ 106 (649)
Q Consensus 28 ~~~~~-~~~~p~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~ 106 (649)
+++++ .|+.++ .+|++|+||+|++.+.+ ...+++++ +.+++.+||+|+++||++|..... +++.+.
T Consensus 37 ~~~i~~~~~~~~-~~rI~~lSDlH~~~~~~--~~~l~~~v-~~i~~~~pDlVli~GD~~d~~~~~---------~~~~~~ 103 (271)
T PRK11340 37 RHRLAFFKDNAA-PFKILFLADLHYSRFVP--LSLISDAI-ALGIEQKPDLILLGGDYVLFDMPL---------NFSAFS 103 (271)
T ss_pred EEEccCCCCCCC-CcEEEEEcccCCCCcCC--HHHHHHHH-HHHHhcCCCEEEEccCcCCCCccc---------cHHHHH
Confidence 35566 555443 59999999999986543 23567777 556788999999999999843221 122344
Q ss_pred HHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc-eEEEEeCCeeEEEEEecCCCccCC
Q 006340 107 NVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVGL 185 (649)
Q Consensus 107 ~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG~ 185 (649)
+.++++.+ ..|+|.|+||||...-. ...+.+.+.. ++.+..-..+ ...+..++..+.++|+|+... +
T Consensus 104 ~~L~~L~~-----~~pv~~V~GNHD~~~~~---~~~~~~~~~l--~~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~~-~- 171 (271)
T PRK11340 104 DVLSPLAE-----CAPTFACFGNHDRPVGT---EKNHLIGETL--KSAGITVLFNQATVIATPNRQFELVGTGDLWA-G- 171 (271)
T ss_pred HHHHHHhh-----cCCEEEecCCCCcccCc---cchHHHHHHH--HhcCcEEeeCCeEEEeeCCcEEEEEEecchhc-c-
Confidence 56777653 24899999999975210 0111122111 1112222222 455556667788999987532 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCCCcc
Q 006340 186 RGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFGKNL 265 (649)
Q Consensus 186 ~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g~~l 265 (649)
..+. .+.++ ++.+.|++.|.|.... .+.+.+++++||||||.+|.+..
T Consensus 172 --------~~~~------~~~~~-------~~~~~IlL~H~P~~~~-----------~~~~~~~dL~lsGHTHGGQi~lP 219 (271)
T PRK11340 172 --------QCKP------PPASE-------ANLPRLVLAHNPDSKE-----------VMRDEPWDLMLCGHTHGGQLRVP 219 (271)
T ss_pred --------CCCh------hHhcC-------CCCCeEEEEcCCChhH-----------hhccCCCCEEEeccccCCeEEcc
Confidence 1111 11121 1248999999997642 12345799999999999986311
Q ss_pred c---ee-eeccccccccccccCCccccccCC
Q 006340 266 K---RH-HYMDHNFLSQKFFQSNMHQIPLGS 292 (649)
Q Consensus 266 ~---~~-h~~~~~~~~G~~~~~~~~~~~~~~ 292 (649)
. .. ...+.++..|.|..+++.++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G 250 (271)
T PRK11340 220 LVGEPFAPVEDKRYVAGLNAFGERQIYTTRG 250 (271)
T ss_pred ccCccccccccCcccCCcEEeCCcEEEEeCC
Confidence 0 00 011234777777777766654443
No 13
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.73 E-value=7.5e-17 Score=160.23 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=103.9
Q ss_pred ceEEEEEcCCCCCCCCCC-----cHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHHPD-----RASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIK 114 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~-----~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~ 114 (649)
.|||+||||+|++..... ......+.+.+.++..+||+||++||+++...... +.++.++++++.+..
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-------~~~~~~~~~~~~l~~ 74 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-------NSTSALDKAVSPMID 74 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-------HHHHHHHHHHHHHHH
Confidence 589999999999886421 11122334445566789999999999999776421 123344556665543
Q ss_pred hcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCC
Q 006340 115 RSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGH 194 (649)
Q Consensus 115 ~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~ 194 (649)
.++|++.++|||| ..|.
T Consensus 75 ----~~~p~~~~~GNHD-----------------------------------------------------------~~g~ 91 (199)
T cd07383 75 ----RKIPWAATFGNHD-----------------------------------------------------------GYDW 91 (199)
T ss_pred ----cCCCEEEECccCC-----------------------------------------------------------CCCC
Confidence 2469999999999 1346
Q ss_pred CCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCcc------------------CCCCchhHHHHHH-HhCCceEEEeC
Q 006340 195 PADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFS------------------ASSHSGRSLQDIF-LKHSLSAYLCG 255 (649)
Q Consensus 195 l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~------------------~~~~~~~~l~~ll-~~~~v~l~L~G 255 (649)
++++|++||++++++.....+...+.++|.|+|+... ....+..++.+.+ +..++++++||
T Consensus 92 l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~G 171 (199)
T cd07383 92 IRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCG 171 (199)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeC
Confidence 7889999999999876321123358999999987521 0112345566666 44569999999
Q ss_pred cccCCC
Q 006340 256 HLHTRF 261 (649)
Q Consensus 256 HtH~~~ 261 (649)
|+|.+.
T Consensus 172 H~H~~~ 177 (199)
T cd07383 172 HDHGND 177 (199)
T ss_pred CCCCcc
Confidence 999865
No 14
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=6.2e-16 Score=166.62 Aligned_cols=272 Identities=14% Similarity=0.092 Sum_probs=173.5
Q ss_pred EEEEeCCCCCCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 006340 29 RVIQLREGPEHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNV 108 (649)
Q Consensus 29 ~~~~~~~~p~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~v 108 (649)
..+..|...+...+++.++|+=....... ..... ....|+|+|++.|||+.+..... ..|..|-+.
T Consensus 136 f~F~t~p~~~~~~~~~i~GDlG~~~~~~s----~~~~~---~~~~k~d~vlhiGDlsYa~~~~n-------~~wD~f~r~ 201 (452)
T KOG1378|consen 136 FSFKTPPGQDSPTRAAIFGDMGCTEPYTS----TLRNQ---EENLKPDAVLHIGDLSYAMGYSN-------WQWDEFGRQ 201 (452)
T ss_pred eEeECCCCccCceeEEEEccccccccccc----hHhHH---hcccCCcEEEEecchhhcCCCCc-------cchHHHHhh
Confidence 34444442225699999999966553321 12222 12338999999999997765321 238888888
Q ss_pred HHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCc--cceEEEEeCCeeEEEEEecCCCccCCC
Q 006340 109 MQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQN--VNSVTVQIGDEKHLFVGFDSTMSVGLR 186 (649)
Q Consensus 109 l~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~--~~~~~~~~~~g~~~fIglD~~~~pG~~ 186 (649)
++.+++ ..||+++.||||....++. -|..|...-.+..... .++..++++.|.+|||++++..+.|.
T Consensus 202 vEp~As-----~vPymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~- 270 (452)
T KOG1378|consen 202 VEPIAS-----YVPYMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNF- 270 (452)
T ss_pred hhhhhc-----cCceEEecccccccCCCcc-----cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccc-
Confidence 888764 4699999999999764432 2333332111111111 11245667778999999998765321
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCC---------CchhHHHHHHHhCCceEEEeCcc
Q 006340 187 GPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASS---------HSGRSLQDIFLKHSLSAYLCGHL 257 (649)
Q Consensus 187 ~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~---------~~~~~l~~ll~~~~v~l~L~GHt 257 (649)
....+|.+||+++|+++++. +..++|++.|.|+++.... .-+.+|+++|-+++|+++|.||.
T Consensus 271 -------~~~~~QY~WL~~dL~~v~r~--~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHv 341 (452)
T KOG1378|consen 271 -------LKGTAQYQWLERDLASVDRK--KTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHV 341 (452)
T ss_pred -------cccchHHHHHHHHHHHhccc--CCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccc
Confidence 24468999999999998742 1469999999999874321 11247999999999999999999
Q ss_pred cCCCCCccceeeec--cccccccccccCCccccccCCcccccCCCCCCC-ccceeeecccccccceEEEEE-cCCEEEEE
Q 006340 258 HTRFGKNLKRHHYM--DHNFLSQKFFQSNMHQIPLGSTKNCSSGAPSIG-EFWEWEMGDWRKSRAMRILAI-DRGHISYV 333 (649)
Q Consensus 258 H~~~g~~l~~~h~~--~~~~~~G~~~~~~~~~~~~~~~~~cs~~~~~~~-g~~ele~~dw~~~r~yrvl~i-D~~~~sf~ 333 (649)
|..+. +.+.-.. .++.-++++..+..++++..+..+|..+....- -.++|.+-.- ..=||.++.+ ++.+..+.
T Consensus 342 H~YER--~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~-~dfG~~~L~v~N~TH~~~~ 418 (452)
T KOG1378|consen 342 HRYER--FCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFRE-GDFGYTRLTAKNGTHAHVH 418 (452)
T ss_pred eehhc--cchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCccccccc-ccCCeEEEEEecCceEEEE
Confidence 99985 3332111 122226678888888888888888877665422 2334433221 1235666655 44566665
Q ss_pred EEee
Q 006340 334 DIDF 337 (649)
Q Consensus 334 d~~~ 337 (649)
.++-
T Consensus 419 ~~~~ 422 (452)
T KOG1378|consen 419 WVRN 422 (452)
T ss_pred EEec
Confidence 5554
No 15
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.71 E-value=9.8e-17 Score=163.99 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
||+||||+|+..........+++++ +.+++.+||+|+++|||++.... ....++.+.+ +...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~-~~~~~~~~d~vv~~GDl~~~~~~--------------~~~~~~~l~~---~~~~ 62 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLA-QYLKKQKIDHLHIAGDISNDFQR--------------SLPFIEKLQE---LKGI 62 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHH-HHHHhcCCCEEEECCccccchhh--------------HHHHHHHHHH---hcCC
Confidence 5899999998632222223466777 55667789999999999986421 1124444443 1246
Q ss_pred eEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCcc--CC--------------
Q 006340 122 IFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSV--GL-------------- 185 (649)
Q Consensus 122 p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~p--G~-------------- 185 (649)
|++.++||||.... ...+.++++. ......+ ....+..+++.|++++..... +.
T Consensus 63 pv~~v~GNHD~~~~----~~~~~~~~~~-----~~~~l~~-~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~ 132 (239)
T TIGR03729 63 KVTFNAGNHDMLKD----LTYEEIESND-----SPLYLHN-RFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSF 132 (239)
T ss_pred cEEEECCCCCCCCC----CCHHHHHhcc-----chhhhcc-cccccCCCceEEEeeccceecccccccCHHHHHHhhhcE
Confidence 99999999998521 1111122111 0000111 111222356889988732111 00
Q ss_pred ------CCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCcc---------CC-----CCchhHHHHHHH
Q 006340 186 ------RGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFS---------AS-----SHSGRSLQDIFL 245 (649)
Q Consensus 186 ------~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~---------~~-----~~~~~~l~~ll~ 245 (649)
..|. ..|.+.+++++||++.|++.. ++++|+++|+|+... .. ..+..++.++++
T Consensus 133 ~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~~~-----~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~ 206 (239)
T TIGR03729 133 WFDRRIKRPM-SDPERTAIVLKQLKKQLNQLD-----NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLV 206 (239)
T ss_pred EeecccCCCC-ChHHHHHHHHHHHHHHHHhcC-----CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHH
Confidence 0111 124566789999999998653 247999999986421 10 113478999999
Q ss_pred hCCceEEEeCcccCCC
Q 006340 246 KHSLSAYLCGHLHTRF 261 (649)
Q Consensus 246 ~~~v~l~L~GHtH~~~ 261 (649)
++++++++|||+|...
T Consensus 207 ~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 207 KYEIKDVIFGHLHRRF 222 (239)
T ss_pred HhCCCEEEECCccCCC
Confidence 9999999999999885
No 16
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.71 E-value=7.4e-16 Score=166.30 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=92.2
Q ss_pred eEEEEEecCCCccCC-CCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCc-cC-C--------------
Q 006340 171 KHLFVGFDSTMSVGL-RGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSF-SA-S-------------- 233 (649)
Q Consensus 171 ~~~fIglD~~~~pG~-~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~-~~-~-------------- 233 (649)
.+++|+||++.+.|. ..|..+.|.++++||+||+++|++.+. +...+|+++|+|+.. .. .
T Consensus 304 plrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a---~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~ 380 (492)
T TIGR03768 304 PLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA---DGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPD 380 (492)
T ss_pred ceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC---CCceEEEEeCCCcccCCccchhhhcccccccccc
Confidence 459999999975432 223457899999999999999997641 223577777778753 11 0
Q ss_pred CC---chhHHHHHHHhCC-ceEEEeCcccCCCCCccceeeeccccccccccccCCccccccCCcccccCCCCCCCcccee
Q 006340 234 SH---SGRSLQDIFLKHS-LSAYLCGHLHTRFGKNLKRHHYMDHNFLSQKFFQSNMHQIPLGSTKNCSSGAPSIGEFWEW 309 (649)
Q Consensus 234 ~~---~~~~l~~ll~~~~-v~l~L~GHtH~~~g~~l~~~h~~~~~~~~G~~~~~~~~~~~~~~~~~cs~~~~~~~g~~el 309 (649)
.+ ++.+|.++|.+|+ |.++||||.|.... +. |.... +..+.+||||+
T Consensus 381 L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v---~a-~~~p~-------------------------~~~pe~gFWev 431 (492)
T TIGR03768 381 LQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTV---KA-FPSPD-------------------------PARPEYGFWQV 431 (492)
T ss_pred ccccccHHHHHHHHhcCCCeEEEEcCCcccccc---cc-cCCCC-------------------------CCCCcCceEEE
Confidence 11 2348999999995 99999999998853 22 11110 11123689999
Q ss_pred eeccccc-ccceEEEEE---cCCEEEEEEEeecc
Q 006340 310 EMGDWRK-SRAMRILAI---DRGHISYVDIDFKS 339 (649)
Q Consensus 310 e~~dw~~-~r~yrvl~i---D~~~~sf~d~~~~~ 339 (649)
|...-.+ +..+|++.| .++.+|+.....+.
T Consensus 432 eTaSl~DfPQq~R~~Ei~~n~d~tvsi~tt~vd~ 465 (492)
T TIGR03768 432 ETASLRDFPQQFRTFEIYLNSDDTVSIEAVNVDV 465 (492)
T ss_pred eehhhccchhhceEEEEEeCCCCeEEEEEEecch
Confidence 9877665 456776666 45678887666653
No 17
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.70 E-value=1.6e-16 Score=161.85 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=112.9
Q ss_pred EEEEcCCCCCC-------CCCCcHHHHHHHHHHHHhcc--CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 006340 43 AVQLSDLHFSV-------HHPDRASDFKRIVGPALSMI--SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 43 fv~ISDlHls~-------~~~~~~~~l~~~i~~~l~~~--kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
+.|+||+|+.. ...+.+.++.+.+.+.+++. +||+|+++|||++....+ .+...++.+.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~------------~~~~~l~~l~ 68 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE------------EAKLDLAWID 68 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH------------HHHHHHHHHH
Confidence 46899999983 12222333444444666665 999999999999655321 1223344444
Q ss_pred HhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCC-----
Q 006340 114 KRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGP----- 188 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p----- 188 (649)
+ ++ .|+|.|+||||... ...+.+++... ..+.....+ ..+.. +++.|+|++....++. .+
T Consensus 69 ~---l~-~~v~~V~GNHD~~~-----~~~~~~~~~l~--~~~~~~~~n-~~~~~--~~i~i~G~~~~~~~~~-~~~~~~~ 133 (232)
T cd07393 69 A---LP-GTKVLLKGNHDYWW-----GSASKLRKALE--ESRLALLFN-NAYID--DDVAICGTRGWDNPGN-PWPPINE 133 (232)
T ss_pred h---CC-CCeEEEeCCccccC-----CCHHHHHHHHH--hcCeEEecc-CcEEE--CCEEEEEEEeeCCCCC-ccccccc
Confidence 3 22 37899999999842 11222222110 001100111 12222 3588888864332211 11
Q ss_pred ---CCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 189 ---TNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 189 ---~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
....|.+.++|++||+++|++.+.. ....++|+++|+|..... .+...+.++++++++++++|||+|..+.
T Consensus 134 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~-~~~~~~i~~~H~p~~~~~--~~~~~~~~~~~~~~v~~vl~GH~H~~~~ 207 (232)
T cd07393 134 TLKVEEDEKIFERELERLELSLKAAKKR-EKEKIKIVMLHYPPANEN--GDDSPISKLIEEYGVDICVYGHLHGVGR 207 (232)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcCCC--CCHHHHHHHHHHcCCCEEEECCCCCCcc
Confidence 1123455678999999999876421 111369999999875422 2456788999999999999999998874
No 18
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.69 E-value=6e-16 Score=161.09 Aligned_cols=184 Identities=22% Similarity=0.359 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
++|+||||+|+++......+.+.+++ +.++..+||++|+||||++.+... +++..++.++.+ . ..
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~-~~i~~~~~D~~v~tGDl~~~~~~~---------~~~~~~~~l~~~-~----~~ 65 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALL-AAIEQLKPDLLVVTGDLTNDGEPE---------EYRRLKELLARL-E----LP 65 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHH-HHHhcCCCCEEEEccCcCCCCCHH---------HHHHHHHHHhhc-c----CC
Confidence 58999999999952233344566776 567788999999999999996542 233333444311 1 23
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCC-eeEEEEEecCCCccCCCCCCCCCCCCCHHH
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGD-EKHLFVGFDSTMSVGLRGPTNLFGHPADQL 199 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~-g~~~fIglD~~~~pG~~~p~~~~G~l~~~q 199 (649)
.|++.+|||||.+.. ....+.+... .... +...... +...++++|+.... .-.|.+.+.|
T Consensus 66 ~~~~~vpGNHD~~~~-----~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~d~~~~~------~~~G~~~~~q 126 (301)
T COG1409 66 APVIVVPGNHDARVV-----NGEAFSDQFF----NRYA----VLVGACSSGGWRVIGLDSSVPG------VPLGRLGAEQ 126 (301)
T ss_pred CceEeeCCCCcCCch-----HHHHhhhhhc----ccCc----ceEeeccCCceEEEEecCCCCC------CCCCEECHHH
Confidence 589999999999753 1122221100 0100 1111111 46789999987643 2357899999
Q ss_pred HHHHHHHHhcccccCCCCceEEEEEecCCCccC------CCCchhHHHHHHHhCC--ceEEEeCcccCC
Q 006340 200 LTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA------SSHSGRSLQDIFLKHS--LSAYLCGHLHTR 260 (649)
Q Consensus 200 L~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~------~~~~~~~l~~ll~~~~--v~l~L~GHtH~~ 260 (649)
++|+++.|++.+.. . ...+++++|+|..... ...+...+..++..++ +.++||||.|..
T Consensus 127 ~~~l~~~l~~~~~~-~-~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 127 LDWLEEALAAAPER-A-KDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHhCccc-c-CceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 99999999976521 1 1245777777766421 1224457778888888 999999999987
No 19
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.65 E-value=2e-14 Score=154.72 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=121.2
Q ss_pred CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHH-HHHHHHHHHHhcC
Q 006340 39 HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWME-YQNVMQDVIKRSG 117 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~-Y~~vl~~L~~~~~ 117 (649)
..++|+.++|.=-+.. .-....+.+.+..+..++|||+.+||.++++..+.. ...|+. |.++..+. ++
T Consensus 25 ~~l~F~~vGDwG~g~~---~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~-----Dp~f~~~FE~vY~~~---s~ 93 (394)
T PTZ00422 25 AQLRFASLGNWGTGSK---QQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLN-----DPKWKHCFENVYSEE---SG 93 (394)
T ss_pred CeEEEEEEecCCCCch---hHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCcc-----chhHHhhHhhhccCc---ch
Confidence 4689999999853221 111234444444456799999999999866654221 223543 55555442 11
Q ss_pred CCCceEEEecCCCCCCCCCCCCCchhhhc------------ccccc----cccCCCCccceE--EEEe-----------C
Q 006340 118 LEKSIFYDIRGNHDNFGVPIVGGSFDFFS------------KHSIN----GQLGRKQNVNSV--TVQI-----------G 168 (649)
Q Consensus 118 l~~~p~~~I~GNHD~~~v~~~~~~~~~~~------------~ys~~----~~l~~~~~~~~~--~~~~-----------~ 168 (649)
.-++|||.|.||||..+-.+ +.-+.+. .|+.. .+......+..+ .+.. .
T Consensus 94 ~L~~Pwy~vLGNHDy~Gn~~--AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~ 171 (394)
T PTZ00422 94 DMQIPFFTVLGQADWDGNYN--AELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHK 171 (394)
T ss_pred hhCCCeEEeCCcccccCCch--hhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCC
Confidence 12469999999999865322 1111111 11110 111111111111 1111 1
Q ss_pred CeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCC-c---hhHHHHHH
Q 006340 169 DEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSH-S---GRSLQDIF 244 (649)
Q Consensus 169 ~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~-~---~~~l~~ll 244 (649)
+..+.|+.+|+...-. ..| +....+.+.+||+++|+... +..+++|+++|||+.....-. + ...|..+|
T Consensus 172 ~~~v~fifiDT~~l~~-~~~---~~~~~~~~w~~L~~~L~~a~---k~a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL 244 (394)
T PTZ00422 172 DMSVAFIFIDTWILSS-SFP---YKKVSERAWQDLKATLEYAP---KIADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLL 244 (394)
T ss_pred CCEEEEEEEECchhcc-cCC---ccccCHHHHHHHHHHHHhhc---cCCCeEEEEecCceeecCCCCCCHHHHHHHHHHH
Confidence 3458999999875431 111 22346789999999997543 234699999999998643211 1 23788999
Q ss_pred HhCCceEEEeCcccCCCC
Q 006340 245 LKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 245 ~~~~v~l~L~GHtH~~~g 262 (649)
++|+|++|+|||.|..+.
T Consensus 245 ~ky~VdlYisGHDH~lq~ 262 (394)
T PTZ00422 245 KDAQVDLYISGYDRNMEV 262 (394)
T ss_pred HHcCcCEEEEccccceEE
Confidence 999999999999998874
No 20
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.8e-15 Score=146.85 Aligned_cols=217 Identities=17% Similarity=0.124 Sum_probs=117.6
Q ss_pred ccceEEEEeCCCCCCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCC-CCCcchhhhhhhhHHHH
Q 006340 25 ADGRRVIQLREGPEHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTD-GKSKDLLTMKQNEVEWM 103 (649)
Q Consensus 25 ~~~~~~~~~~~~p~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd-~~~~~~~~s~Q~e~eW~ 103 (649)
+++.+-.. |..+++.++|+.|+|.= +..+-+-.....-..+..+..+.|||+.+||-+. ++..+....
T Consensus 29 ~eLp~l~~-p~~~dgslsflvvGDwG--r~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp-------- 97 (336)
T KOG2679|consen 29 AELPRLYD-PAKSDGSLSFLVVGDWG--RRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDP-------- 97 (336)
T ss_pred hhhhhhcC-CCCCCCceEEEEEcccc--cCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCCh--------
Confidence 33444333 55566789999999985 3222111112222223335679999999999874 443322111
Q ss_pred HHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCcc--ceEEEEeCCeeEEEEEecCCC
Q 006340 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNV--NSVTVQIGDEKHLFVGFDSTM 181 (649)
Q Consensus 104 ~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~--~~~~~~~~~g~~~fIglD~~~ 181 (649)
.+++..+.+-...-+. .|||.|.||||.++-.... ....+++.+. +.-....+ ++..++..+..+.+...|...
T Consensus 98 ~Fq~sF~nIYT~pSLQ-kpWy~vlGNHDyrGnV~AQ-ls~~l~~~d~--RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~ 173 (336)
T KOG2679|consen 98 RFQDSFENIYTAPSLQ-KPWYSVLGNHDYRGNVEAQ-LSPVLRKIDK--RWICPRSFYVDAEIVEMFFVDTTPFMDDTFT 173 (336)
T ss_pred hHHhhhhhcccCcccc-cchhhhccCccccCchhhh-hhHHHHhhcc--ceecccHHhhcceeeeeeccccccchhhhee
Confidence 1222222222111143 4999999999998632110 1112332211 00111111 122233333334444444333
Q ss_pred ccCCCCCCCCCCC-----CCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCC----chhHHHHHHHhCCceEE
Q 006340 182 SVGLRGPTNLFGH-----PADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSH----SGRSLQDIFLKHSLSAY 252 (649)
Q Consensus 182 ~pG~~~p~~~~G~-----l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~----~~~~l~~ll~~~~v~l~ 252 (649)
.+ .+.-++..|. +...++.||+..|++.. .+++|+.+|||+-....-. -.+.|..+|++++|++|
T Consensus 174 ~~-~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~-----a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY 247 (336)
T KOG2679|consen 174 LC-TDDVYDWRGVLPRVKYLRALLSWLEVALKASR-----AKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLY 247 (336)
T ss_pred cc-cccccccccCChHHHHHHHHHHHHHHHHHHhh-----cceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEE
Confidence 22 1222223332 33578999999998753 4699999999987522111 13568899999999999
Q ss_pred EeCcccCCCC
Q 006340 253 LCGHLHTRFG 262 (649)
Q Consensus 253 L~GHtH~~~g 262 (649)
+|||.|..+.
T Consensus 248 ~nGHDHcLQh 257 (336)
T KOG2679|consen 248 INGHDHCLQH 257 (336)
T ss_pred Eecchhhhhh
Confidence 9999999874
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.62 E-value=9.7e-15 Score=142.36 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=104.9
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCce
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p 122 (649)
|+++||+|... ..+++ ..+++.+||+||++||+++.+..+. |+.+ +.+.+ + +.|
T Consensus 1 i~~~sD~H~~~------~~~~~---~~~~~~~~D~vv~~GDl~~~~~~~~------------~~~~-~~l~~---~-~~p 54 (188)
T cd07392 1 ILAISDIHGDV------EKLEA---IILKAEEADAVIVAGDITNFGGKEA------------AVEI-NLLLA---I-GVP 54 (188)
T ss_pred CEEEEecCCCH------HHHHH---HHhhccCCCEEEECCCccCcCCHHH------------HHHH-HHHHh---c-CCC
Confidence 58999999764 13333 2345679999999999999775421 2222 33332 2 369
Q ss_pred EEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHH
Q 006340 123 FYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTE 202 (649)
Q Consensus 123 ~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~w 202 (649)
++.++||||..... ..... . .....+ ..+..+ ++.|+++|+... .|+...|.++++|++|
T Consensus 55 ~~~v~GNHD~~~~~------~~~~~----~---~~~~~~-~~~~~~--~~~~~g~~~~~~----~~~~~~~~~~~~~l~~ 114 (188)
T cd07392 55 VLAVPGNCDTPEIL------GLLTS----A---GLNLHG-KVVEVG--GYTFVGIGGSNP----TPFNTPIELSEEEIVS 114 (188)
T ss_pred EEEEcCCCCCHHHH------Hhhhc----C---cEecCC-CEEEEC--CEEEEEeCCCCC----CCCCCccccCHHHHHH
Confidence 99999999975311 11110 0 000111 123333 488999986531 1223346788999999
Q ss_pred HHHHHhcccccCCCCceEEEEEecCCCcc--C--CC---CchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 203 IDSELSQWNSQSTKPVTKITFGHFPVSFS--A--SS---HSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 203 L~~~L~~~~~~~~~~~~~Ilf~H~P~~~~--~--~~---~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
+ +.+... +.++.|+++|+|+... . .. .+.+++.++++++++++++|||+|...
T Consensus 115 ~-~~l~~~-----~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 115 D-GRLNNL-----LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred h-hhhhcc-----CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 8 444322 2357999999987531 1 11 145789999999999999999999875
No 22
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.62 E-value=9.9e-15 Score=150.74 Aligned_cols=164 Identities=20% Similarity=0.134 Sum_probs=101.8
Q ss_pred HhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHH-HHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCC-CCchhhhcc
Q 006340 70 LSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWM-EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIV-GGSFDFFSK 147 (649)
Q Consensus 70 l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~-~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~-~~~~~~~~~ 147 (649)
++..+||+|+++|||+|.+... ..++|. .|+++.+.+... ....|++.|+||||....... ....+.|++
T Consensus 41 ~~~l~PD~vv~lGDL~d~G~~~------~~~~~~~~~~rf~~i~~~~--~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~ 112 (257)
T cd08163 41 QKQLKPDSTIFLGDLFDGGRDW------ADEYWKKEYNRFMRIFDPS--PGRKMVESLPGNHDIGFGNGVVLPVRQRFEK 112 (257)
T ss_pred HHhcCCCEEEEecccccCCeeC------cHHHHHHHHHHHHHHhcCC--CccceEEEeCCCcccCCCCCCCHHHHHHHHH
Confidence 3457999999999999987532 124564 365555544321 113699999999998321100 001122332
Q ss_pred cccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecC
Q 006340 148 HSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFP 227 (649)
Q Consensus 148 ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P 227 (649)
+ ++. . .+.+.. ++++||++|+....+. ..|.+..+|.+||++.|++.+ ...++|+++|+|
T Consensus 113 ~-----Fg~---~-~~~~~~--~~~~fV~Lds~~l~~~-----~~~~~~~~~~~~l~~~l~~~~----~~~p~ILl~H~P 172 (257)
T cd08163 113 Y-----FGP---T-SRVIDV--GNHTFVILDTISLSNK-----DDPDVYQPPREFLHSFSAMKV----KSKPRILLTHVP 172 (257)
T ss_pred H-----hCC---C-ceEEEE--CCEEEEEEccccccCC-----cccccchhHHHHHHhhhhccC----CCCcEEEEeccc
Confidence 2 111 1 233443 5689999999764432 235677889999999887643 345899999999
Q ss_pred CCccC---------C--C---C---------chhHHHHHHHhCCceEEEeCcccCCC
Q 006340 228 VSFSA---------S--S---H---------SGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 228 ~~~~~---------~--~---~---------~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
+.... + + . +.+.-..||+.-+..++|+||.|.+-
T Consensus 173 lyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C 229 (257)
T cd08163 173 LYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYC 229 (257)
T ss_pred cccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccc
Confidence 87311 0 0 0 11233466666788999999999874
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.60 E-value=1.3e-14 Score=145.96 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
+||+++||+|.+.... .+.+++++ +.+++.+||+|+++||+++...... +...+.++++. .+
T Consensus 2 ~~i~~~sDlH~~~~~~--~~~~~~~~-~~~~~~~~d~vl~~GD~~~~~~~~~----------~~~~~~l~~l~-----~~ 63 (223)
T cd07385 2 LRIAHLSDLHLGPFVS--RERLERLV-EKINALKPDLVVLTGDLVDGSVDVL----------ELLLELLKKLK-----AP 63 (223)
T ss_pred CEEEEEeecCCCccCC--HHHHHHHH-HHHhccCCCEEEEcCcccCCcchhh----------HHHHHHHhccC-----CC
Confidence 7999999999987532 24577777 5566789999999999999775421 11223444432 24
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc-eEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHH
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQL 199 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~q 199 (649)
.|++.++||||.... ....+.+.. +..+..-+.+ ...+..++.++.++++++... .
T Consensus 64 ~~v~~v~GNHD~~~~-----~~~~~~~~l--~~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~~----------------~ 120 (223)
T cd07385 64 LGVYAVLGNHDYYSG-----DEENWIEAL--ESAGITVLRNESVEISVGGATIGIAGVDDGLG----------------R 120 (223)
T ss_pred CCEEEECCCcccccC-----chHHHHHHH--HHcCCEEeecCcEEeccCCeEEEEEeccCccc----------------c
Confidence 699999999998642 111101111 0011111112 344555555667777543210 0
Q ss_pred HHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCCCccc--ee--eeccccc
Q 006340 200 LTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFGKNLK--RH--HYMDHNF 275 (649)
Q Consensus 200 L~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g~~l~--~~--h~~~~~~ 275 (649)
.+++.+.++..+ ++.+.|++.|.|..... +.+.++++++|||+|..+.+... .. ......+
T Consensus 121 ~~~~~~~~~~~~----~~~~~I~l~H~P~~~~~-----------~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~ 185 (223)
T cd07385 121 RPDLEKALKGLD----EDDPNILLAHQPDTAEE-----------AAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPY 185 (223)
T ss_pred CCCHHHHHhCCC----CCCCEEEEecCCChhHH-----------hcccCccEEEeccCCCCEEeccccccccchhhcCcc
Confidence 122444454432 34589999999875411 13457999999999999853111 11 0122346
Q ss_pred cccccccCCcccc
Q 006340 276 LSQKFFQSNMHQI 288 (649)
Q Consensus 276 ~~G~~~~~~~~~~ 288 (649)
..|.|..++..++
T Consensus 186 ~~G~~~~~~~~~~ 198 (223)
T cd07385 186 DYGLYRKGGSQLY 198 (223)
T ss_pred cceEEEECCEEEE
Confidence 6666666665443
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.58 E-value=3.3e-14 Score=142.53 Aligned_cols=191 Identities=17% Similarity=0.125 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCCCCCCc-----H----HHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 006340 42 WAVQLSDLHFSVHHPDR-----A----SDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDV 112 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~-----~----~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L 112 (649)
||+|+||+|++...... . ..|++++ +.+++.+||+|+++||+++...... .++..+.+.++++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~i~~~GD~~~~~~~~~-------~~~~~~~~~~~~~ 72 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIV-ELAIEEKVDFVLIAGDLFDSNNPSP-------EALELLIEALRRL 72 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHH-HHHHhcCCCEEEECCcccCCCCCCH-------HHHHHHHHHHHHH
Confidence 68999999999764211 1 2355555 4455679999999999999875321 1233444555554
Q ss_pred HHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc-eEEEEeCCeeEEEEEecCCCccCCCCCCCC
Q 006340 113 IKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTNL 191 (649)
Q Consensus 113 ~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~~ 191 (649)
.. .+.|++.++||||......... . ...+............. ......+..++.+++++.....
T Consensus 73 ~~----~~~~v~~~~GNHD~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-------- 137 (223)
T cd00840 73 KE----AGIPVFIIAGNHDSPSRLGALS--P-LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-------- 137 (223)
T ss_pred HH----CCCCEEEecCCCCCcccccccc--c-hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH--------
Confidence 32 2469999999999864211100 0 00000000000000111 1233445677888888643211
Q ss_pred CCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCc--hhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 192 FGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHS--GRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 192 ~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~--~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
...+.++++++.+.+.. +..+.|++.|.|......... .....+.+...+++++++||+|..+.
T Consensus 138 ---~~~~~~~~~~~~~~~~~----~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 138 ---RLRDLLADAELRPRPLD----PDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred ---HHHHHHHHHHHHhhccC----CCCcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCee
Confidence 11223333344443322 345899999998753211111 01233445567899999999998864
No 25
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.57 E-value=3.1e-15 Score=139.42 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
|||++|||+|.+..... . ..+.+.+.....+||+||++||+++.+..... +........... ..+
T Consensus 1 ~ri~~isD~H~~~~~~~--~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~--------~~~~~~~~~~~~----~~~ 65 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS--D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEE--------WRAQFWFFIRLL----NPK 65 (200)
T ss_dssp EEEEEEEBBTTTHHHHC--H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHH--------HHHHHHHHHHHH----HTT
T ss_pred CeEEEEcCCCCCCcchh--H-HHHHHHHHhccCCCCEEEeecccccccccccc--------chhhhccchhhh----hcc
Confidence 79999999999874322 1 12333344567899999999999999875321 111100111111 134
Q ss_pred ceEEEecCCCCCCC
Q 006340 121 SIFYDIRGNHDNFG 134 (649)
Q Consensus 121 ~p~~~I~GNHD~~~ 134 (649)
.|++.++||||...
T Consensus 66 ~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 66 IPVYFILGNHDYYS 79 (200)
T ss_dssp TTEEEEE-TTSSHH
T ss_pred ccccccccccccce
Confidence 69999999999964
No 26
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.54 E-value=1.6e-13 Score=140.66 Aligned_cols=224 Identities=16% Similarity=0.199 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
|++++|||+|++...++..+.+.+++.. ...+||.|+++||++|.+..+.... ...+...+.++++.+ .+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~--~~~~~d~l~i~GDl~d~~~g~~~~~----~~~~~~~~~l~~l~~----~g 70 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRG--EARQADALYILGDLFEAWIGDDDPS----PFAREIAAALKALSD----SG 70 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHh--hhccCCEEEEccceeccccccCcCC----HHHHHHHHHHHHHHH----cC
Confidence 6899999999987655433345555521 2468999999999999754321111 011223345566543 23
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCC---------
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNL--------- 191 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~--------- 191 (649)
.|++.++||||... . +.+.+.. +..-..+...++.++.++.+...|..+... ..|..
T Consensus 71 ~~v~~v~GNHD~~~------~-~~~~~~~-----g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d--~~y~~~r~~~r~~~ 136 (241)
T PRK05340 71 VPCYFMHGNRDFLL------G-KRFAKAA-----GMTLLPDPSVIDLYGQRVLLLHGDTLCTDD--KAYQRFRRKVRNPW 136 (241)
T ss_pred CeEEEEeCCCchhh------h-HHHHHhC-----CCEEeCCcEEEEECCEEEEEECCcccccCC--HHHHHHHHHHhCHH
Confidence 69999999999742 1 1221111 111122234466777888888888764321 11110
Q ss_pred ----CCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCCCccce
Q 006340 192 ----FGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFGKNLKR 267 (649)
Q Consensus 192 ----~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g~~l~~ 267 (649)
+..+..+...++.+.+.+..+..+..+. ......+...+.++++++++++++|||+|....
T Consensus 137 ~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~----- 201 (241)
T PRK05340 137 LQWLFLALPLSIRLRIAAKMRAKSKAANQSKS----------LEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI----- 201 (241)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCc----------ccccCCCHHHHHHHHHHhCCCEEEECcccCcce-----
Confidence 1122223334444444332111000011 001122346788999999999999999997641
Q ss_pred eeeccccccccccccCCccccccCCcccccCCCCCCCccceeeecccccccceEEEEEcCCEEEEEE
Q 006340 268 HHYMDHNFLSQKFFQSNMHQIPLGSTKNCSSGAPSIGEFWEWEMGDWRKSRAMRILAIDRGHISYVD 334 (649)
Q Consensus 268 ~h~~~~~~~~G~~~~~~~~~~~~~~~~~cs~~~~~~~g~~ele~~dw~~~r~yrvl~iD~~~~sf~d 334 (649)
|....+ ..+...+.+|||... +.++.+|++.++...
T Consensus 202 -~~~~~~----------------------------~~~~~~~~lgdw~~~--~~~~~~~~~~~~~~~ 237 (241)
T PRK05340 202 -HQLQAG----------------------------GQPATRIVLGDWHEQ--GSVLKVDADGVELIP 237 (241)
T ss_pred -eeccCC----------------------------CcceEEEEeCCCCCC--CeEEEEECCceEEEe
Confidence 111100 011235788999654 555688888877653
No 27
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.54 E-value=4.4e-13 Score=138.61 Aligned_cols=260 Identities=20% Similarity=0.248 Sum_probs=141.1
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCCCC--------CCc-----HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhh
Q 006340 30 VIQLREGPEHVIWAVQLSDLHFSVHH--------PDR-----ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMK 96 (649)
Q Consensus 30 ~~~~~~~p~~~~~fv~ISDlHls~~~--------~~~-----~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~ 96 (649)
..+++...++.|||+|++|+|++... |.. ...-.+++++.++.++||+|++|||++++... ...+
T Consensus 43 ~~~lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t-~Da~- 120 (379)
T KOG1432|consen 43 RLKLRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST-QDAA- 120 (379)
T ss_pred ceeeeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc-HhHH-
Confidence 34455666778999999999998762 111 11235778888888999999999999988432 1111
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcc--ccccc------ccC-CCCccceEEEEe
Q 006340 97 QNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSK--HSING------QLG-RKQNVNSVTVQI 167 (649)
Q Consensus 97 Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~--ys~~~------~l~-~~~~~~~~~~~~ 167 (649)
..+++.+.+. .-.++||..+.||||..+........++.++ |+-.+ ... ..+. +++.+..
T Consensus 121 ---------~sl~kAvaP~-I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~-gnyn~~i 189 (379)
T KOG1432|consen 121 ---------TSLMKAVAPA-IDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGF-GNYNLQI 189 (379)
T ss_pred ---------HHHHHHhhhH-hhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecc-cceEEEe
Confidence 1233333322 1246899999999998653211001111111 11000 000 0000 0111111
Q ss_pred ---------CCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhccccc--CCCCceEEEEEecCCCcc----C
Q 006340 168 ---------GDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQ--STKPVTKITFGHFPVSFS----A 232 (649)
Q Consensus 168 ---------~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~--~~~~~~~Ilf~H~P~~~~----~ 232 (649)
+.....+..+|+..++.-.+-...++.+...|++||+..-++-... .-++.+-+++.|+|+... .
T Consensus 190 ~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~ 269 (379)
T KOG1432|consen 190 EGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELES 269 (379)
T ss_pred ccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccC
Confidence 1112234445554433211111234578899999999877431110 112236899999997620 0
Q ss_pred -------------CCCchhHHHHHHH-hCCceEEEeCcccCCCCC-ccceeeeccccccccccccCCccccccCCccccc
Q 006340 233 -------------SSHSGRSLQDIFL-KHSLSAYLCGHLHTRFGK-NLKRHHYMDHNFLSQKFFQSNMHQIPLGSTKNCS 297 (649)
Q Consensus 233 -------------~~~~~~~l~~ll~-~~~v~l~L~GHtH~~~g~-~l~~~h~~~~~~~~G~~~~~~~~~~~~~~~~~cs 297 (649)
.+.-..++.+.|. +-+|++++|||-|.+... ..+. . ..-|.
T Consensus 270 ~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~----------------~--------~wlCy 325 (379)
T KOG1432|consen 270 KTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKG----------------E--------LWLCY 325 (379)
T ss_pred CCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceecccCC----------------e--------EEEEe
Confidence 1112346777777 667999999999988742 1111 0 22354
Q ss_pred CCCCCCCccceeeecccccccceEEEEEcCCEEE
Q 006340 298 SGAPSIGEFWEWEMGDWRKSRAMRILAIDRGHIS 331 (649)
Q Consensus 298 ~~~~~~~g~~ele~~dw~~~r~yrvl~iD~~~~s 331 (649)
.+....+|+- .+ +-.|+-||+.+|...-.
T Consensus 326 gGgaGyggYg---~~--gw~Rr~Rv~e~d~~~~~ 354 (379)
T KOG1432|consen 326 GGGAGYGGYG---IG--GWERRARVFELDLNKDR 354 (379)
T ss_pred cCCCccCCcC---cC--CcccceEEEEccccccc
Confidence 4443323321 11 13689999999987664
No 28
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.52 E-value=1.3e-12 Score=132.01 Aligned_cols=178 Identities=12% Similarity=0.158 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 40 VIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
..|++.+||+|-. ...+++++ +..++.+||+|+++||+++.+... +.|.++++.+.+ +
T Consensus 4 ~~kIl~iSDiHgn------~~~le~l~-~~~~~~~~D~vv~~GDl~~~g~~~-----------~~~~~~l~~l~~---l- 61 (224)
T cd07388 4 VRYVLATSNPKGD------LEALEKLV-GLAPETGADAIVLIGNLLPKAAKS-----------EDYAAFFRILGE---A- 61 (224)
T ss_pred eeEEEEEEecCCC------HHHHHHHH-HHHhhcCCCEEEECCCCCCCCCCH-----------HHHHHHHHHHHh---c-
Confidence 5799999999942 34677777 445567899999999999977321 124466666654 2
Q ss_pred CceEEEecCCCCCCCCCCCCCchhhhcc-cccccccCC-CCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCH
Q 006340 120 KSIFYDIRGNHDNFGVPIVGGSFDFFSK-HSINGQLGR-KQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPAD 197 (649)
Q Consensus 120 ~~p~~~I~GNHD~~~v~~~~~~~~~~~~-ys~~~~l~~-~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~ 197 (649)
..|++.|+||||.. + .++.++ +........ ....+. ..... +.+.|+|++..... | ...++
T Consensus 62 ~~pv~~V~GNhD~~-v------~~~l~~~~~~~~~~p~~~~lh~~-~~~~~-g~~~~~GlGGs~~~----~----~e~sE 124 (224)
T cd07388 62 HLPTFYVPGPQDAP-L------WEYLREAYNAELVHPEIRNVHET-FAFWR-GPYLVAGVGGEIAD----E----GEPEE 124 (224)
T ss_pred CCceEEEcCCCChH-H------HHHHHHHhcccccCccceecCCC-eEEec-CCeEEEEecCCcCC----C----CCcCH
Confidence 25999999999974 1 111121 100000000 001111 12222 45889999855411 1 34577
Q ss_pred HHH----HHHHH-HHhcccccCCCCceEEEEEecCCCcc-CCCCchhHHHHHHHhCCceEEEeCccc
Q 006340 198 QLL----TEIDS-ELSQWNSQSTKPVTKITFGHFPVSFS-ASSHSGRSLQDIFLKHSLSAYLCGHLH 258 (649)
Q Consensus 198 ~qL----~wL~~-~L~~~~~~~~~~~~~Ilf~H~P~~~~-~~~~~~~~l~~ll~~~~v~l~L~GHtH 258 (649)
+++ +|+.+ .|+.... . .....|+++|.|+.-. ..-...+.+++++++++-.+++|||.|
T Consensus 125 ~e~~~~~~~~~~~~l~~~~~-~-~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 125 HEALRYPAWVAEYRLKALWE-L-KDYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred HHHhhhhhhHHHHHHHHHHh-C-CCCCeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc
Confidence 762 45433 2222211 1 2348999999998643 123345789999999999999999999
No 29
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.52 E-value=1.1e-13 Score=129.84 Aligned_cols=76 Identities=29% Similarity=0.452 Sum_probs=52.9
Q ss_pred EEEEcCCCCCCCCCCcHHH----HHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 006340 43 AVQLSDLHFSVHHPDRASD----FKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGL 118 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~----l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l 118 (649)
|+||||+|++......... +++++ +.++..+||+|+++||+++.+.. .+|+.+.+.++++...
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~-~~~~~~~~d~vi~~GDl~~~~~~---------~~~~~~~~~~~~l~~~--- 67 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLL-AEIKALDPDLVVITGDLTQRGLP---------EEFEEAREFLDALPAP--- 67 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHH-HHHhccCCCEEEECCCCCCCCCH---------HHHHHHHHHHHHcccc---
Confidence 5899999998865322111 23344 45567899999999999998753 2355555666665321
Q ss_pred CCceEEEecCCCCC
Q 006340 119 EKSIFYDIRGNHDN 132 (649)
Q Consensus 119 ~~~p~~~I~GNHD~ 132 (649)
..|++.++||||.
T Consensus 68 -~~~~~~v~GNHD~ 80 (144)
T cd07400 68 -LEPVLVVPGNHDV 80 (144)
T ss_pred -CCcEEEeCCCCeE
Confidence 1499999999996
No 30
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.50 E-value=3.5e-13 Score=137.21 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=100.8
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceE
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIF 123 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~ 123 (649)
++|||+|++...++..+.+.+++.+.. .+||.|+++||++|.+..+.... ...+...+.++++.+ .+.|+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~----~~~~~~~~~l~~L~~----~~~~v 71 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPS----TLARSVAQAIRQVSD----QGVPC 71 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCC----HHHHHHHHHHHHHHH----CCCeE
Confidence 799999999755433334445553322 28999999999999654211111 111233445666543 13699
Q ss_pred EEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCC-------------
Q 006340 124 YDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTN------------- 190 (649)
Q Consensus 124 ~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~------------- 190 (649)
|.++||||... + ..+.+. .+..-..+....+.++.++.++..|..+... ..|.
T Consensus 72 ~~v~GNHD~~~-----~--~~~~~~-----~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d--~~y~~~r~~~r~~~~~~ 137 (231)
T TIGR01854 72 YFMHGNRDFLI-----G--KRFARE-----AGMTLLPDPSVIDLYGQKVLLMHGDTLCTDD--TAYQAFRAKVHQPWLQR 137 (231)
T ss_pred EEEcCCCchhh-----h--HHHHHH-----CCCEEECCCEEEEECCEEEEEEcCccccCCC--HHHHHHHHHHhCHHHHH
Confidence 99999999742 1 111111 1111111234456678889898888775321 1111
Q ss_pred CCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 191 LFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 191 ~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
.+..+..+...++.+.+.+..++.+..++..++. .+...+.++++++++++++|||+|...
T Consensus 138 ~~~~l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~GHtH~~~ 198 (231)
T TIGR01854 138 LFLHLPLAVRVKLARKIRAESRADKQMKSQDIMD----------VNPAEVAAVMRRYGVDRLIHGHTHRPA 198 (231)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCcchhhC----------CCHHHHHHHHHHcCCCEEEECCccCcc
Confidence 0112222344555555544321111111111111 234567888888999999999999775
No 31
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.40 E-value=3.5e-13 Score=134.53 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=77.2
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceE
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIF 123 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~ 123 (649)
++|||+|+++..|...+-|.+|+++ .+.++|.+++.||++|.+..+.... +..+++.+++...+. +++++
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~--~a~~ad~lyilGDifd~w~g~~~~~-------~~~~~V~~~l~~~a~-~G~~v 70 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLRE--EAAQADALYILGDIFDGWIGDDEPP-------QLHRQVAQKLLRLAR-KGTRV 70 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHh--ccccCcEEEEechhhhhhhcCCccc-------HHHHHHHHHHHHHHh-cCCeE
Confidence 4799999998888777777788743 2347799999999999886543111 234455555555443 56899
Q ss_pred EEecCCCCCCCCCCCCCchhhhcccccccccC-CCCccceEEEEeCCeeEEEEEecCCCcc
Q 006340 124 YDIRGNHDNFGVPIVGGSFDFFSKHSINGQLG-RKQNVNSVTVQIGDEKHLFVGFDSTMSV 183 (649)
Q Consensus 124 ~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~-~~~~~~~~~~~~~~g~~~fIglD~~~~p 183 (649)
|+++||||.. ..+.+..- .+ ..........+.++.++.++..|..+..
T Consensus 71 ~~i~GN~Dfl-------l~~~f~~~-----~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~ 119 (237)
T COG2908 71 YYIHGNHDFL-------LGKRFAQE-----AGGMTLLPDPIVLDLYGKRILLAHGDTFCTD 119 (237)
T ss_pred EEecCchHHH-------HHHHHHhh-----cCceEEcCcceeeeecCcEEEEEeCCcccch
Confidence 9999999953 11222211 11 1111223556677889999999988754
No 32
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.36 E-value=8.8e-11 Score=128.35 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCCCCC--CCc----HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcch
Q 006340 39 HVIWAVQLSDLHFSVHH--PDR----ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDL 92 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~--~~~----~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~ 92 (649)
+.|||+|+||+|++... +.+ ...|++++ +.+...+||+|+++|||+|...+..
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil-~~a~~~~vD~VLiaGDLFd~~~Ps~ 60 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVL-QIAKEQDVDMILLGGDLFHENKPSR 60 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHH-HHHHHcCCCEEEECCccCCCCCCCH
Confidence 57999999999998542 222 23466776 4455789999999999999987653
No 33
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.33 E-value=6.3e-12 Score=121.07 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=81.3
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCce
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p 122 (649)
|+++||+|.+...... .+.+..+..+||+++++||+++...... |. ...... ....|
T Consensus 1 ~~~iSDlH~~~~~~~~------~~~~~~~~~~~d~li~~GDi~~~~~~~~---------~~---~~~~~~-----~~~~~ 57 (166)
T cd07404 1 IQYLSDLHLEFEDNLA------DLLNFPIAPDADILVLAGDIGYLTDAPR---------FA---PLLLAL-----KGFEP 57 (166)
T ss_pred CceEccccccCccccc------cccccCCCCCCCEEEECCCCCCCcchHH---------HH---HHHHhh-----cCCcc
Confidence 5789999997643221 1112234678999999999998764321 11 111111 12469
Q ss_pred EEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHH
Q 006340 123 FYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTE 202 (649)
Q Consensus 123 ~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~w 202 (649)
++.++||||.. +.|+|.. ... .+...++++++|
T Consensus 58 v~~v~GNHD~~--------------------------------------~~~~G~~--~w~-------~~~~~~~~~~~~ 90 (166)
T cd07404 58 VIYVPGNHEFY--------------------------------------VRIIGTT--LWS-------DISLFGEAAARM 90 (166)
T ss_pred EEEeCCCcceE--------------------------------------EEEEeee--ccc-------ccCccchHHHHh
Confidence 99999999984 1122221 000 000122333333
Q ss_pred HHHHHhcccccCCCCceEEEEEecCCCccCC-------CCc---hhHHHHHHHhCCceEEEeCcccCCC
Q 006340 203 IDSELSQWNSQSTKPVTKITFGHFPVSFSAS-------SHS---GRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 203 L~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~-------~~~---~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
.-++++ +++|+++|+|+..... ..+ .+.+.++++++++++++|||+|...
T Consensus 91 ~~~d~~---------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 91 RMNDFR---------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CCCCCC---------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccc
Confidence 333221 3789999998763211 111 2347777888899999999999885
No 34
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.31 E-value=2.2e-11 Score=127.35 Aligned_cols=88 Identities=24% Similarity=0.269 Sum_probs=61.6
Q ss_pred ceEEEEeCCCCC--CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCC-CCcchhhhhhhhHHHH
Q 006340 27 GRRVIQLREGPE--HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDG-KSKDLLTMKQNEVEWM 103 (649)
Q Consensus 27 ~~~~~~~~~~p~--~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~-~~~~~~~s~Q~e~eW~ 103 (649)
.++.+..|+.+. ..++++|+||+|...+. ....+.+ ..+....||+|++|||+++. ..+. +.
T Consensus 29 ~~~~i~~~~~~~~~~~~~iv~lSDlH~~~~~----~~~~~~~-~~i~~~~~DlivltGD~~~~~~~~~----------~~ 93 (284)
T COG1408 29 VKLTILTPKLPASLQGLKIVQLSDLHSLPFR----EEKLALL-IAIANELPDLIVLTGDYVDGDRPPG----------VA 93 (284)
T ss_pred EEEEeecCCCCcccCCeEEEEeehhhhchhh----HHHHHHH-HHHHhcCCCEEEEEeeeecCCCCCC----------HH
Confidence 456677777775 35899999999999876 2334455 33456677999999999996 3322 12
Q ss_pred HHHHHHHHHHHhcCCCCceEEEecCCCCCCC
Q 006340 104 EYQNVMQDVIKRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 104 ~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~ 134 (649)
...+.++.+.+ ..++|.+.||||...
T Consensus 94 ~~~~~L~~L~~-----~~gv~av~GNHd~~~ 119 (284)
T COG1408 94 ALALFLAKLKA-----PLGVFAVLGNHDYGV 119 (284)
T ss_pred HHHHHHHhhhc-----cCCEEEEeccccccc
Confidence 23455666543 348999999999864
No 35
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.29 E-value=2e-10 Score=123.63 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCCCC--CCcH----HHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHH-HHHHHH
Q 006340 41 IWAVQLSDLHFSVHH--PDRA----SDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQN-VMQDVI 113 (649)
Q Consensus 41 ~~fv~ISDlHls~~~--~~~~----~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~-vl~~L~ 113 (649)
|||+|+||+|++... +... ..+++++ +.+++.+||+|+++||++|........ .....++ +++.+.
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii-~~a~~~~vD~VliaGDlfD~~~~~~~~------~~~~~~~~l~~~L~ 73 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAI-EYSKAHGITTWIQLGDTFDVRKAITQN------TMNFVREKIFDLLK 73 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCHH------HHHHHHHHHHHHHH
Confidence 699999999998653 2112 2345555 445577999999999999986422111 1112222 344443
Q ss_pred HhcCCCCceEEEecCCCCCC
Q 006340 114 KRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~ 133 (649)
+ .++|++.++||||..
T Consensus 74 ~----~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 74 E----AGITLHVLVGNHDMY 89 (340)
T ss_pred H----CCCeEEEEccCCCcc
Confidence 3 247999999999974
No 36
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.21 E-value=3e-10 Score=124.52 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCC-CCC--CCcHHHHHHHHH---HHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFS-VHH--PDRASDFKRIVG---PALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIK 114 (649)
Q Consensus 41 ~~fv~ISDlHls-~~~--~~~~~~l~~~i~---~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~ 114 (649)
|||+|+||+|++ ... +.+.+++.+++. +.+...++|+||++|||+|...+....-. .+.+.++++..
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~-------~~~~~l~~l~~ 73 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALK-------LFLEALRRLKD 73 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHH-------HHHHHHHHhcc
Confidence 699999999999 332 455555444433 33456799999999999999876543221 23345555443
Q ss_pred hcCCCCceEEEecCCCCCCC
Q 006340 115 RSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 115 ~~~l~~~p~~~I~GNHD~~~ 134 (649)
.++|+|.|.||||...
T Consensus 74 ----~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 74 ----AGIPVVVIAGNHDSPS 89 (390)
T ss_pred ----CCCcEEEecCCCCchh
Confidence 3579999999999964
No 37
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.21 E-value=1.8e-10 Score=113.88 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhh---------------hhhhHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTM---------------KQNEVEWMEY 105 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s---------------~Q~e~eW~~Y 105 (649)
=+++.|||+|-. .+.+++++ +.+...+||+++++|||..+.....+.. ...-.+.++|
T Consensus 6 ~kilA~s~~~g~------~e~l~~l~-~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 6 RKILAISNFRGD------FELLERLV-EVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp -EEEEEE--TT-------HHHHHHHH-HHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred hhheeecCcchH------HHHHHHHH-hhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 389999999843 35677777 5566669999999999987654322111 0001123456
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc-eEEEEeCCeeEEEEEecCCCccC
Q 006340 106 QNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVG 184 (649)
Q Consensus 106 ~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG 184 (649)
.++++.|... ..|+++||||||... ..+++.-.... .-+.+..+ .-++..-.|.|.++|+......+
T Consensus 79 ~~ff~~L~~~----~~p~~~vPG~~Dap~-------~~~lr~a~~~e-~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~ 146 (255)
T PF14582_consen 79 DKFFRILGEL----GVPVFVVPGNMDAPE-------RFFLREAYNAE-IVTPHIHNVHESFFFWKGEYLVAGMGGEITDD 146 (255)
T ss_dssp HHHHHHHHCC-----SEEEEE--TTS-SH-------HHHHHHHHHCC-CC-TTEEE-CTCEEEETTTEEEEEE-SEEESS
T ss_pred HHHHHHHHhc----CCcEEEecCCCCchH-------HHHHHHHhccc-eeccceeeeeeeecccCCcEEEEecCccccCC
Confidence 6777777642 469999999999852 23443322111 11111111 01122224579999987655433
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCc-cCCC-CchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 185 LRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSF-SASS-HSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 185 ~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~-~~~~-~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.+.. .+.-.+---..++..+.|+++ ++.+.|++.|.|+.. .... ...+.+.+++++|+-.+++|||.|...+
T Consensus 147 ~~~~-~~~LrYP~weaey~lk~l~el-----k~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~ 220 (255)
T PF14582_consen 147 QREE-EFKLRYPAWEAEYSLKFLREL-----KDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHG 220 (255)
T ss_dssp S-BC-SSS-EEEHHHHHHHHGGGGGC-----TSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE-
T ss_pred Cccc-cccccchHHHHHHHHHHHHhc-----ccccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchh
Confidence 3221 111111112333334444443 234788889988721 1111 1346899999999999999999997754
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.18 E-value=4e-10 Score=114.45 Aligned_cols=181 Identities=18% Similarity=0.139 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
+|+++|||+|..... ..+ +.++..+||+|+++||+++... ++++.+.+ + .
T Consensus 1 ~rIa~isDiHg~~~~--------~~~-~~l~~~~pD~Vl~~GDi~~~~~-----------------~~~~~l~~---l-~ 50 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------EDI-KALHLLQPDLVLFVGDFGNESV-----------------QLVRAISS---L-P 50 (238)
T ss_pred CEEEEEecCCCCchH--------HHH-HHHhccCCCEEEECCCCCcChH-----------------HHHHHHHh---C-C
Confidence 589999999965321 111 3456779999999999986421 23444443 2 2
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc--eEEEEeCCeeEEEEEecCCCccCCCCCC-----CCCC
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN--SVTVQIGDEKHLFVGFDSTMSVGLRGPT-----NLFG 193 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~--~~~~~~~~g~~~fIglD~~~~pG~~~p~-----~~~G 193 (649)
.|++.++||||.........+.+.+. +++...+... .-...++.-++.++|--....+|...-. ..||
T Consensus 51 ~p~~~V~GNHD~~~~~~~~~k~~~l~-----~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg 125 (238)
T cd07397 51 LPKAVILGNHDAWYDATFRKKGDRVQ-----EQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG 125 (238)
T ss_pred CCeEEEcCCCcccccccccchHHHHH-----HHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC
Confidence 48999999999864211000122222 1111111110 1112233336888888777766643221 1244
Q ss_pred CCCH-HHHHHHHHHHhcccccCCCCceEEEEEecCCCccC-CC-------------C-chhHHHHHHHh----CCceEEE
Q 006340 194 HPAD-QLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA-SS-------------H-SGRSLQDIFLK----HSLSAYL 253 (649)
Q Consensus 194 ~l~~-~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~-~~-------------~-~~~~l~~ll~~----~~v~l~L 253 (649)
..+- +-++.+-+.++... .....|+++|.++.-.. .+ + .-++|.+.+.+ ..+.+++
T Consensus 126 i~s~~eA~~~ive~~~~~~----~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~ 201 (238)
T cd07397 126 VISLEESAQRIIAAAKKAP----PDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVV 201 (238)
T ss_pred CCCHHHHHHHHHHHhhhcC----CCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEE
Confidence 2222 22333333332221 33578999998765321 00 0 11356444443 2389999
Q ss_pred eCcccCC
Q 006340 254 CGHLHTR 260 (649)
Q Consensus 254 ~GHtH~~ 260 (649)
+||+|..
T Consensus 202 fGH~H~~ 208 (238)
T cd07397 202 FGHMHHR 208 (238)
T ss_pred eCCccCc
Confidence 9999977
No 39
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.17 E-value=1.8e-10 Score=108.83 Aligned_cols=60 Identities=30% Similarity=0.536 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
||++++||+|... ..++++++. + .+||+|+++||+++. . ++++.+++
T Consensus 1 Mki~~~sD~H~~~------~~~~~~~~~-~--~~~d~vi~~GDi~~~---~---------------~~~~~~~~------ 47 (156)
T PF12850_consen 1 MKIAVISDLHGNL------DALEAVLEY-I--NEPDFVIILGDIFDP---E---------------EVLELLRD------ 47 (156)
T ss_dssp EEEEEEE--TTTH------HHHHHHHHH-H--TTESEEEEES-SCSH---H---------------HHHHHHHH------
T ss_pred CEEEEEeCCCCCh------hHHHHHHHH-h--cCCCEEEECCCchhH---H---------------HHHHHHhc------
Confidence 7999999999954 247777743 4 469999999999982 1 34555443
Q ss_pred ceEEEecCCCCCC
Q 006340 121 SIFYDIRGNHDNF 133 (649)
Q Consensus 121 ~p~~~I~GNHD~~ 133 (649)
.|++.|+||||..
T Consensus 48 ~~~~~v~GNHD~~ 60 (156)
T PF12850_consen 48 IPVYVVRGNHDNW 60 (156)
T ss_dssp HEEEEE--CCHST
T ss_pred CCEEEEeCCcccc
Confidence 2899999999964
No 40
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.15 E-value=3.7e-09 Score=104.91 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCC--CCCCcchhhhhhhhHHHHHHHHHHHHHHHhcC
Q 006340 40 VIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLT--DGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSG 117 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLt--d~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~ 117 (649)
.||++++||+|.+. ..+++++ ......++|+++++|||+ +-+.+.. +. ++ ..++.+..
T Consensus 3 ~mkil~vtDlHg~~------~~~~k~~-~~~~~~~~D~lviaGDlt~~~~~~~~~--~~---~~-----~~~e~l~~--- 62 (226)
T COG2129 3 KMKILAVTDLHGSE------DSLKKLL-NAAADIRADLLVIAGDLTYFHFGPKEV--AE---EL-----NKLEALKE--- 62 (226)
T ss_pred cceEEEEeccccch------HHHHHHH-HHHhhccCCEEEEecceehhhcCchHH--HH---hh-----hHHHHHHh---
Confidence 58999999999875 2467777 555677999999999999 5444321 11 11 00333332
Q ss_pred CCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCH
Q 006340 118 LEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPAD 197 (649)
Q Consensus 118 l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~ 197 (649)
...|++.++||-|...+. +...+.. .. .. .-.... +.+.|+++--.. ..|+|....+++
T Consensus 63 -~~~~v~avpGNcD~~~v~------~~l~~~~------~~-v~-~~v~~i--~~~~~~G~Ggsn----~tp~nt~~e~~E 121 (226)
T COG2129 63 -LGIPVLAVPGNCDPPEVI------DVLKNAG------VN-VH-GRVVEI--GGYGFVGFGGSN----PTPFNTPREFSE 121 (226)
T ss_pred -cCCeEEEEcCCCChHHHH------HHHHhcc------cc-cc-cceEEe--cCcEEEEecccC----CCCCCCccccCH
Confidence 247999999999886432 1122111 00 11 112222 457777753222 135566677777
Q ss_pred HHH-HHHHHHHhcccccCCCCceEEEEEecCCCcc---CCC----CchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 198 QLL-TEIDSELSQWNSQSTKPVTKITFGHFPVSFS---ASS----HSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 198 ~qL-~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~---~~~----~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
+++ ..+++.+++.. + ...|+..|.|+... ... ...+++++++++.+..+.+|||.|-..|
T Consensus 122 ~~I~s~l~~~v~~~~----~-~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G 189 (226)
T COG2129 122 DEIYSKLKSLVKKAD----N-PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRG 189 (226)
T ss_pred HHHHHHHHHHHhccc----C-cceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeeccccc
Confidence 653 34444444332 1 11299999987631 111 1236899999999999999999997654
No 41
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.11 E-value=7.6e-10 Score=105.13 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCCCCCCcHH--------HHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHPDRAS--------DFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQD 111 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~--------~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~ 111 (649)
|++..|+|+|++...|+..+ .=+++++.......| |.|++.|||..+..-+. +. .-++-
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~e--a~----------~Dl~~ 68 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEE--AE----------EDLRF 68 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechh--hh----------hhhhh
Confidence 57889999999877654321 224555444444444 89999999998765321 10 11222
Q ss_pred HHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccc-eEEEEeCCeeEEEEEecCCCccCCCCCCC
Q 006340 112 VIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTN 190 (649)
Q Consensus 112 L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~ 190 (649)
+ ..++++ -|.++||||.+-. +.....+.+.. .-.+.+ .+. ..++.++|.-.-..|..+
T Consensus 69 i---~~LPG~-K~m~rGNHDYWw~-s~skl~n~lp~--------~l~~~n~~f~----l~n~aI~G~RgW~s~~~~---- 127 (230)
T COG1768 69 I---GDLPGT-KYMIRGNHDYWWS-SISKLNNALPP--------ILFYLNNGFE----LLNYAIVGVRGWDSPSFD---- 127 (230)
T ss_pred h---hcCCCc-EEEEecCCccccc-hHHHHHhhcCc--------hHhhhcccee----EeeEEEEEeecccCCCCC----
Confidence 2 225654 4569999999842 11011111110 000111 111 234777776544433211
Q ss_pred CCCCCCHH-------HHHHHHH-HHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 191 LFGHPADQ-------LLTEIDS-ELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 191 ~~G~l~~~-------qL~wL~~-~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
...++++ ++..|+. ..++.+ +.-...|+|.|||...... .+..+.++++++++..++.||+|...
T Consensus 128 -~e~~te~Deki~~RE~~RLrlsa~a~l~---k~~~~fivM~HYPP~s~~~--t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 128 -SEPLTEQDEKIFLREIGRLRLSADAALP---KGVSKFIVMTHYPPFSDDG--TPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred -cCccchhHHHHHHHHHHHHHHHHHHhcc---cCcCeEEEEEecCCCCCCC--CCcchHHHHhhcceeeEEeeeccCCC
Confidence 1113332 3334443 223332 2335799999999865322 24579999999999999999999775
No 42
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.10 E-value=6.4e-10 Score=106.55 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=49.8
Q ss_pred EEEcCCCCCCCCCCc-------HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhc
Q 006340 44 VQLSDLHFSVHHPDR-------ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRS 116 (649)
Q Consensus 44 v~ISDlHls~~~~~~-------~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~ 116 (649)
+.|||+|+....... ...+.+.....++..+||+|+++||+++...... ..+|..+...+.++.+.
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~------~~~~~~~~~~~~~~~~~- 73 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWST------DEEWEDYVERFKKMFGH- 73 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCC------HHHHHHHHHHHHHHhcc-
Confidence 368999995432211 1123334445567789999999999998765321 13454433333332211
Q ss_pred CCCCceEEEecCCCCCC
Q 006340 117 GLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 117 ~l~~~p~~~I~GNHD~~ 133 (649)
....|++.++||||..
T Consensus 74 -~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 74 -PPDLPLHVVVGNHDIG 89 (156)
T ss_pred -CCCCeEEEEcCCCCcC
Confidence 1246999999999984
No 43
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.10 E-value=8.3e-10 Score=102.83 Aligned_cols=63 Identities=27% Similarity=0.306 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
||+++||+|.... .++..+||+++++||+++.+... + |+.+++.+.+ ++..
T Consensus 1 ~i~~isD~H~~~~--------------~~~~~~~D~vi~~GD~~~~~~~~---------~---~~~~~~~l~~---~~~~ 51 (135)
T cd07379 1 RFVCISDTHSRHR--------------TISIPDGDVLIHAGDLTERGTLE---------E---LQKFLDWLKS---LPHP 51 (135)
T ss_pred CEEEEeCCCCCCC--------------cCcCCCCCEEEECCCCCCCCCHH---------H---HHHHHHHHHh---CCCC
Confidence 5899999997642 12346899999999999876532 1 2233333333 2223
Q ss_pred eEEEecCCCCCC
Q 006340 122 IFYDIRGNHDNF 133 (649)
Q Consensus 122 p~~~I~GNHD~~ 133 (649)
+++.++||||..
T Consensus 52 ~~~~v~GNHD~~ 63 (135)
T cd07379 52 HKIVIAGNHDLT 63 (135)
T ss_pred eEEEEECCCCCc
Confidence 467899999974
No 44
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=2.1e-09 Score=111.04 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCCCC--CCcHH----HHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHH--PDRAS----DFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIK 114 (649)
Q Consensus 41 ~~fv~ISDlHls~~~--~~~~~----~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~ 114 (649)
|||+|+||+|++... ..+.. .|++++ +.+.+.+||+|+++||++|....... ..+.+.+.++++.+
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~-~~~~~~~~D~lli~GDi~d~~~p~~~-------~~~~~~~~l~~l~~ 72 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLL-EFAKAEQIDALLVAGDVFDTANPPAE-------AQELFNAFFRNLSD 72 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHH-HHHHHcCCCEEEECCccCCCCCCCHH-------HHHHHHHHHHHHHh
Confidence 699999999998753 22222 344554 44556789999999999998764321 12335566777654
Q ss_pred hcCCCCceEEEecCCCCCCC
Q 006340 115 RSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 115 ~~~l~~~p~~~I~GNHD~~~ 134 (649)
. .++|++.++||||...
T Consensus 73 ~---~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 73 A---NPIPIVVISGNHDSAQ 89 (253)
T ss_pred c---CCceEEEEccCCCChh
Confidence 2 2369999999999853
No 45
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.08 E-value=2.9e-09 Score=118.14 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=126.5
Q ss_pred ceEEEEEcCCCCCCCC----------C-----C----------------------cHHHHHHHHHHHHhccC-CcEEEEc
Q 006340 40 VIWAVQLSDLHFSVHH----------P-----D----------------------RASDFKRIVGPALSMIS-PSLVLIT 81 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~----------~-----~----------------------~~~~l~~~i~~~l~~~k-PD~VIit 81 (649)
.+||+||||+|..... | . ...-++++++...+..+ +|+|+.|
T Consensus 138 ~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~wT 217 (577)
T KOG3770|consen 138 TFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIWT 217 (577)
T ss_pred ceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3999999999997653 1 0 01125666644333334 9999999
Q ss_pred CCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCC--CCch----------hhhcccc
Q 006340 82 GDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIV--GGSF----------DFFSKHS 149 (649)
Q Consensus 82 GDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~--~~~~----------~~~~~ys 149 (649)
||+.....-.. -.+++...+.++.+.+.+. .+++|+|...||||...+..+ .... ..+..++
T Consensus 218 GD~~~H~~w~~----t~~~~l~~~~~l~~~~~e~--FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W~ 291 (577)
T KOG3770|consen 218 GDNVAHDVWAQ----TEEENLSMLSRLTSLLSEY--FPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAWS 291 (577)
T ss_pred CCCCcccchhh----hHHHHHHHHHHHHHHHHHh--CCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhhh
Confidence 99987653221 1234455677777766654 578999999999998644322 1111 1111111
Q ss_pred cc---cccCCCCccc-eEEEEeCCeeEEEEEecCCCccCCCCCCCCCC----CCCHHHHHHHHHHHhcccccCCCCceEE
Q 006340 150 IN---GQLGRKQNVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFG----HPADQLLTEIDSELSQWNSQSTKPVTKI 221 (649)
Q Consensus 150 ~~---~~l~~~~~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G----~l~~~qL~wL~~~L~~~~~~~~~~~~~I 221 (649)
.+ ++ ......+ .|..... ++..+|.+|+..-.- .|++- .-..+||+|+..+|+++++ +...+-
T Consensus 292 ~wlp~e~-~~t~~kga~Y~~~~~-~Glr~IslNt~~c~~----~N~~L~~n~tdp~~~lqWf~~~L~~ae~---~GekVh 362 (577)
T KOG3770|consen 292 TWLPAEA-KETFLKGAYYLVLVI-DGLRLISLNTNYCSA----PNFWLYANQTDPIDQLQWFVDQLQEAES---AGEKVH 362 (577)
T ss_pred ccCCHHH-HhhhhcCcEEEEeec-CCceEEEeccccccc----cceeeeecCCCchHHhhHHHHHHHHHHh---cCCEEE
Confidence 11 10 0111122 2334333 678999998764221 13332 2224689999999998874 335789
Q ss_pred EEEecCCCccCCC-CchhHHHHHHHhCC--ceEEEeCcccCCCC
Q 006340 222 TFGHFPVSFSASS-HSGRSLQDIFLKHS--LSAYLCGHLHTRFG 262 (649)
Q Consensus 222 lf~H~P~~~~~~~-~~~~~l~~ll~~~~--v~l~L~GHtH~~~g 262 (649)
+++|.|......- .....+..++.++. +...+.||+|..+-
T Consensus 363 il~HIPpG~~~c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 363 ILGHIPPGDGVCLEGWSINFYRIVNRFRSTIAGQFYGHTHIDEF 406 (577)
T ss_pred EEEeeCCCCcchhhhhhHHHHHHHHHHHHhhhhhccccCcceeE
Confidence 9999998742221 12345677777765 78999999998873
No 46
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.04 E-value=1.4e-09 Score=105.90 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=52.4
Q ss_pred EEEcCCCCCCCC--CCc------------HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 006340 44 VQLSDLHFSVHH--PDR------------ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVM 109 (649)
Q Consensus 44 v~ISDlHls~~~--~~~------------~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl 109 (649)
+.|+|+|+.... +.+ ...+.+.+...++..+||+|+++|||+|+..... ..+|+.+.+.+
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~------~~~~~~~~~~~ 74 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIAD------SEEWEEYVKRF 74 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCC------HHHHHHHHHHH
Confidence 358999997754 211 1224445556667789999999999999876421 13455444444
Q ss_pred HHHHHhcCC--CCceEEEecCCCCCC
Q 006340 110 QDVIKRSGL--EKSIFYDIRGNHDNF 133 (649)
Q Consensus 110 ~~L~~~~~l--~~~p~~~I~GNHD~~ 133 (649)
.++...... ...|++.|+||||..
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 75 KKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HHHhcccccccCCceEEEECCccccC
Confidence 443221000 146999999999984
No 47
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.03 E-value=1.9e-08 Score=110.70 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCCCC--CCcHHHHHHHHH---HHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHh
Q 006340 41 IWAVQLSDLHFSVHH--PDRASDFKRIVG---PALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKR 115 (649)
Q Consensus 41 ~~fv~ISDlHls~~~--~~~~~~l~~~i~---~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~ 115 (649)
|||+|+||+|++... ..+.++.+++++ +.+++.+||+|+++||++|...+... ..+.+.+++..+.+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~-------a~~~~~~~l~~L~~- 72 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSY-------ARELYNRFVVNLQQ- 72 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHH-------HHHHHHHHHHHHHh-
Confidence 699999999998642 333333333332 44567899999999999998764321 11234456666654
Q ss_pred cCCCCceEEEecCCCCCCC
Q 006340 116 SGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 116 ~~l~~~p~~~I~GNHD~~~ 134 (649)
. +.|++.|+||||...
T Consensus 73 --~-~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 73 --T-GCQLVVLAGNHDSVA 88 (407)
T ss_pred --c-CCcEEEEcCCCCChh
Confidence 2 369999999999864
No 48
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.98 E-value=4.9e-09 Score=103.44 Aligned_cols=137 Identities=18% Similarity=0.284 Sum_probs=83.2
Q ss_pred EEEcCCCCCCCCCCc-----------HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 006340 44 VQLSDLHFSVHHPDR-----------ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDV 112 (649)
Q Consensus 44 v~ISDlHls~~~~~~-----------~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L 112 (649)
+.++|+|+-...... ...+++....+++..+||+|+++|||+|.+.... .++|..+-+-++++
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~------~~e~~e~l~Rf~~I 74 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIAN------DDEYYSYVQRFINI 74 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCC------HHHHHHHHHHHHHH
Confidence 357888885432111 1123344445556789999999999999987532 12343332223333
Q ss_pred HHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCC
Q 006340 113 IKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLF 192 (649)
Q Consensus 113 ~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~ 192 (649)
-.. .+.+|++.++||||..+- + .
T Consensus 75 f~~--~~~~~~~~VpGNHDIG~~----~-~-------------------------------------------------- 97 (195)
T cd08166 75 FEV--PNGTKIIYLPGDNDIGGE----E-E-------------------------------------------------- 97 (195)
T ss_pred hcC--CCCCcEEEECCCCCcCCC----C-C--------------------------------------------------
Confidence 211 345799999999998420 0 0
Q ss_pred CCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 193 GHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 193 G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
...++.++..++. . |+++|.|+... .++.+..++.++.+.++++||.|...
T Consensus 98 -~~~~~~v~RF~~~------------F-i~lsH~P~~~~----~~~~~~~~~~~~~p~~Ifs~H~H~s~ 148 (195)
T cd08166 98 -DPIESKIRRFEKY------------F-IMLSHVPLLAE----GGQALKHVVTDLDPDLIFSAHRHKSS 148 (195)
T ss_pred -CcCHHHHHHHHHh------------h-eeeeccccccc----ccHHHHHHHHhcCceEEEEcCcccee
Confidence 0001111111111 2 88999998752 23467889999999999999999886
No 49
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.98 E-value=2.2e-08 Score=95.74 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhcc-CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMI-SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~-kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
||++++||+|.... .++..+ +.++.. ++|.|+++||+++. ++++.+.+ +
T Consensus 1 m~i~viSD~H~~~~------~~~~~~-~~~~~~~~~d~ii~~GD~~~~-------------------~~~~~l~~---~- 50 (158)
T TIGR00040 1 MKILVISDTHGPLR------ATELPV-ELFNLESNVDLVIHAGDLTSP-------------------FVLKEFED---L- 50 (158)
T ss_pred CEEEEEecccCCcc------hhHhHH-HHHhhccCCCEEEEcCCCCCH-------------------HHHHHHHH---h-
Confidence 68999999996532 234444 444555 89999999999821 12333332 1
Q ss_pred CceEEEecCCCCCC
Q 006340 120 KSIFYDIRGNHDNF 133 (649)
Q Consensus 120 ~~p~~~I~GNHD~~ 133 (649)
+.|++.|+||||..
T Consensus 51 ~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 51 AAKVIAVRGNNDGE 64 (158)
T ss_pred CCceEEEccCCCch
Confidence 23799999999974
No 50
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.92 E-value=3.6e-08 Score=101.34 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCCCCC----CcHHHHHHHHHHHHhccCCc-EEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHh
Q 006340 41 IWAVQLSDLHFSVHHP----DRASDFKRIVGPALSMISPS-LVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKR 115 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~----~~~~~l~~~i~~~l~~~kPD-~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~ 115 (649)
++++|+||+| +...+ ....++.+++ +.+++.+|| +++.+||+++....... . ..+..++.++.
T Consensus 1 l~i~~~sD~h-g~~~~~~~~~g~~~l~~~v-~~~~~~~~~~l~v~~GD~~~~~~~~~~--~-------~~~~~~~~l~~- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPAGGVGGAARLATLI-KEERAENENTLLLDAGDNFDGSPPSTA--T-------KGEANIELMNA- 68 (252)
T ss_pred CEEEEecccc-cCccccCCcCCHHHHHHHH-HHHHhcCCCeEEEeCCccCCCccchhc--c-------CCcHHHHHHHh-
Confidence 4899999999 44321 3455778888 446666787 88999999987654211 0 01134444443
Q ss_pred cCCCCceEEEecCCCCCCCCCCCCCchhhhccccc---ccccCC------CCccc-eEEEEeCCeeEEEEEecCCCccCC
Q 006340 116 SGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSI---NGQLGR------KQNVN-SVTVQIGDEKHLFVGFDSTMSVGL 185 (649)
Q Consensus 116 ~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~---~~~l~~------~~~~~-~~~~~~~~g~~~fIglD~~~~pG~ 185 (649)
+. .-+.++||||...-.. ...+...+... ...+.. ..... ....+.++.++.|+++.+...+..
T Consensus 69 --~g--~d~~~~GNHe~d~g~~--~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~ 142 (252)
T cd00845 69 --LG--YDAVTIGNHEFDYGLD--ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTY 142 (252)
T ss_pred --cC--CCEEeeccccccccHH--HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceee
Confidence 21 4566789999742110 11111111000 000000 00111 235567788999999976544322
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 186 RGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 186 ~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
..|....+.......+.+++..++. ..+...+|++.|-|... ...+.+.+ .+++++++||+|...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~vIvl~H~g~~~------~~~la~~~--~giDlvlggH~H~~~ 207 (252)
T cd00845 143 TPLGWIIGLPFEDLAEAVAVAEELL---AEGADVIILLSHLGLDD------DEELAEEV--PGIDVILGGHTHHLL 207 (252)
T ss_pred cCCCcccCceecCHHHHHHHHHHHH---hCCCCEEEEEeccCccc------hHHHHhcC--CCccEEEcCCcCccc
Confidence 2221111111112223333222211 12456899999988653 11222222 369999999999765
No 51
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.88 E-value=3.3e-09 Score=106.22 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHH-HHHHHHHHHhcCCCCce
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEY-QNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y-~~vl~~L~~~~~l~~~p 122 (649)
++|||+|++...+.....+..++.. ....+||.++++||++|.......... ...... ..+++.. + .+.+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~-~~~~~~~~lvl~GDi~d~~~~~~~~~~---~~~~~~~~~l~~~~-~----~~~~ 71 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAA-LALGEADALYLLGDIFDLWFGDDEVVP---PAAHEVLAALLRLA-D----RGTR 71 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhh-hccCCCCEEEEeccEEEEEecCCCCCC---hHHHHHHHHHHHHH-H----CCCe
Confidence 4799999998765433333443311 113699999999999986543211110 001111 2223222 1 3469
Q ss_pred EEEecCCCCCCCCCCCCCchhhhcccccccccCCCCccceE-EEEeCCeeEEEEEecCCC
Q 006340 123 FYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNVNSV-TVQIGDEKHLFVGFDSTM 181 (649)
Q Consensus 123 ~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~~~~-~~~~~~g~~~fIglD~~~ 181 (649)
++.++||||..- .+.+.... ......... .+..++.++.+...|...
T Consensus 72 v~~v~GNHD~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~HG~~~d 119 (217)
T cd07398 72 VYYVPGNHDFLL-------GDFFAEEL-----GLILLPDPLVHLELDGKRILLEHGDQFD 119 (217)
T ss_pred EEEECCCchHHH-------HhHHHHHc-----CCEEeccceEEEeeCCeEEEEECCCcCc
Confidence 999999999852 11111100 111111122 466677788887777654
No 52
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.87 E-value=2.4e-08 Score=94.92 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
|++++||+|... +.+++++ +.++. +|.++++||+++..... . + . .+.
T Consensus 1 ~i~~isD~H~~~------~~~~~~~-~~~~~--~d~ii~~GD~~~~~~~~---------------~-~---~-----~~~ 47 (155)
T cd00841 1 KIGVISDTHGSL------ELLEKAL-ELFGD--VDLIIHAGDVLYPGPLN---------------E-L---E-----LKA 47 (155)
T ss_pred CEEEEecCCCCH------HHHHHHH-HHhcC--CCEEEECCccccccccc---------------h-h---h-----cCC
Confidence 589999999653 3566666 33333 99999999999877532 1 1 1 124
Q ss_pred eEEEecCCCCCC
Q 006340 122 IFYDIRGNHDNF 133 (649)
Q Consensus 122 p~~~I~GNHD~~ 133 (649)
|++.|+||||..
T Consensus 48 ~~~~V~GNhD~~ 59 (155)
T cd00841 48 PVIAVRGNCDGE 59 (155)
T ss_pred cEEEEeCCCCCc
Confidence 899999999985
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.86 E-value=1.4e-08 Score=91.42 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=44.0
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceE
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIF 123 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~ 123 (649)
+++||+|.+...... ... .....+.+||+|+++||+++....... ..+.. ...... ...|+
T Consensus 1 ~~~gD~h~~~~~~~~---~~~--~~~~~~~~~~~vi~~GD~~~~~~~~~~---------~~~~~-~~~~~~----~~~~~ 61 (131)
T cd00838 1 AVISDIHGNLEALEA---VLE--AALAAAEKPDFVLVLGDLVGDGPDPEE---------VLAAA-LALLLL----LGIPV 61 (131)
T ss_pred CeeecccCCccchHH---HHH--HHHhcccCCCEEEECCcccCCCCCchH---------HHHHH-HHHhhc----CCCCE
Confidence 479999998753221 111 133457899999999999998875321 11111 122211 34699
Q ss_pred EEecCCCC
Q 006340 124 YDIRGNHD 131 (649)
Q Consensus 124 ~~I~GNHD 131 (649)
+.++||||
T Consensus 62 ~~~~GNHD 69 (131)
T cd00838 62 YVVPGNHD 69 (131)
T ss_pred EEeCCCce
Confidence 99999999
No 54
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.85 E-value=5.7e-08 Score=101.62 Aligned_cols=207 Identities=15% Similarity=0.127 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCCCCC-----------CcHHHHHHHHHHHHhccCCcEEEE-cCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP-----------DRASDFKRIVGPALSMISPSLVLI-TGDLTDGKSKDLLTMKQNEVEWMEYQNV 108 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~-----------~~~~~l~~~i~~~l~~~kPD~VIi-tGDLtd~~~~~~~~s~Q~e~eW~~Y~~v 108 (649)
++|+|++|+|- ...| ....++..++ +.+++.+|+.+++ +||+++..........+... .-+..
T Consensus 1 l~il~t~D~Hg-~~~~~~~~~~~~~~~gg~~~l~~~i-~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~---~~~~~ 75 (277)
T cd07410 1 LRILATSDLHG-NLLPYDYYTDKPDASGGLARVATLI-KKARAENPNTLLIDNGDTIQGSPLADYYAKIEDG---DPHPM 75 (277)
T ss_pred CeEEEEecccc-ceeCccccCCCcCCccCHHHHHHHH-HHHHhcCCCeEEEeCCccCCccHHHHHhhhcccC---CCChH
Confidence 57999999994 4321 1235677777 4456667888777 99999865421100000000 00123
Q ss_pred HHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcc--cc---cc-cccC-CCCccce-EEEEeC-CeeEEEEEecC
Q 006340 109 MQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSK--HS---IN-GQLG-RKQNVNS-VTVQIG-DEKHLFVGFDS 179 (649)
Q Consensus 109 l~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~--ys---~~-~~l~-~~~~~~~-~~~~~~-~g~~~fIglD~ 179 (649)
++.++. +. .-+.+.||||...-. +...+..+. +. .+ .... ....+.+ ...+.+ +-++.|+|+-+
T Consensus 76 ~~~ln~---~g--~d~~~lGNHe~d~g~--~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~ 148 (277)
T cd07410 76 IAAMNA---LG--YDAGTLGNHEFNYGL--DYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTT 148 (277)
T ss_pred HHHHHh---cC--CCEEeecccCcccCH--HHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCC
Confidence 444443 21 336678999964210 011111111 00 00 0000 0111123 345677 88999999854
Q ss_pred CCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccC--CCCchhHHHHHHHh-CCceEEEeCc
Q 006340 180 TMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSA--SSHSGRSLQDIFLK-HSLSAYLCGH 256 (649)
Q Consensus 180 ~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~--~~~~~~~l~~ll~~-~~v~l~L~GH 256 (649)
...+....|.+.-|.--.+..+.+++.+++.+++ +...+|+++|....... .........++.++ .+++++++||
T Consensus 149 ~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~--~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGH 226 (277)
T cd07410 149 PQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRAE--GADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGH 226 (277)
T ss_pred cccccccCcccCCCcEEcCHHHHHHHHHHHHHHc--CCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCC
Confidence 3322211221111211111222344444433321 34589999998765321 11122234556655 3699999999
Q ss_pred ccCCC
Q 006340 257 LHTRF 261 (649)
Q Consensus 257 tH~~~ 261 (649)
+|...
T Consensus 227 sH~~~ 231 (277)
T cd07410 227 QHRRF 231 (277)
T ss_pred Ccccc
Confidence 99775
No 55
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.78 E-value=3.9e-07 Score=89.25 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=41.9
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
+++.|||+|++.... .+.+.+.+.++..++|.++++||+++. ++++.+.+ +. .
T Consensus 1 ~i~viSDtHl~~~~~----~~~~~~~~~~~~~~~d~iih~GDi~~~-------------------~~~~~l~~---~~-~ 53 (178)
T cd07394 1 LVLVIGDLHIPHRAS----DLPAKFKKLLVPGKIQHVLCTGNLCSK-------------------ETYDYLKT---IA-P 53 (178)
T ss_pred CEEEEEecCCCCCch----hhHHHHHHHhccCCCCEEEECCCCCCH-------------------HHHHHHHh---hC-C
Confidence 478999999876322 223323244444689999999999871 12333322 11 2
Q ss_pred eEEEecCCCCCC
Q 006340 122 IFYDIRGNHDNF 133 (649)
Q Consensus 122 p~~~I~GNHD~~ 133 (649)
|++.|+||||..
T Consensus 54 ~~~~V~GN~D~~ 65 (178)
T cd07394 54 DVHIVRGDFDEN 65 (178)
T ss_pred ceEEEECCCCcc
Confidence 799999999974
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.67 E-value=4.1e-07 Score=94.27 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCCCCC-----CcHHHHHHHHHHHHhccCCc-EEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP-----DRASDFKRIVGPALSMISPS-LVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIK 114 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~-----~~~~~l~~~i~~~l~~~kPD-~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~ 114 (649)
++++|++|+| ..... .-..++...+ +.+++.+|+ +++.+||+++........ + .+..++.++.
T Consensus 1 ~~il~~nd~~-~~~~~~~~~~gG~~rl~~~i-~~~r~~~~~~l~l~~GD~~~g~~~~~~~--~-------g~~~~~~l~~ 69 (257)
T cd07406 1 FTILHFNDVY-EIAPLDGGPVGGAARFATLR-KQLRKENPNTLVLFSGDVLSPSLLSTAT--K-------GKQMVPVLNA 69 (257)
T ss_pred CeEEEEccce-eecccCCCCcCCHHHHHHHH-HHHHhcCCCEEEEECCCccCCccchhhc--C-------CccHHHHHHh
Confidence 4799999999 32211 1245677787 445556777 999999999866421110 0 1123444433
Q ss_pred hcCCCCceEEEecCCCCCCCCCCCCCchhhhccc-----ccc--cccCCCC--ccc-eEEEEeCCeeEEEEEecCCCccC
Q 006340 115 RSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKH-----SIN--GQLGRKQ--NVN-SVTVQIGDEKHLFVGFDSTMSVG 184 (649)
Q Consensus 115 ~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~y-----s~~--~~l~~~~--~~~-~~~~~~~~g~~~fIglD~~~~pG 184 (649)
+. .-+.++||||...-. +...+.+++. +.+ ..-+... .+. ...++.++.++.|+|+.+...+.
T Consensus 70 ---l~--~d~~~~GNHefd~g~--~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~ 142 (257)
T cd07406 70 ---LG--VDLACFGNHEFDFGE--DQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLE 142 (257)
T ss_pred ---cC--CcEEeecccccccCH--HHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccc
Confidence 21 336689999974210 0111111110 000 0000000 112 35566788899999996543321
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhC-CceEEEeCcccCCC
Q 006340 185 LRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKH-SLSAYLCGHLHTRF 261 (649)
Q Consensus 185 ~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~-~v~l~L~GHtH~~~ 261 (649)
.- +....+..-.+..+.+++.+++.++ .+...+|++.|-+... + . ++.++. +++++++||+|...
T Consensus 143 ~~-~~~~~~~~~~d~~~~~~~~v~~~~~--~~~D~iVvl~H~g~~~-----d-~---~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 143 TL-TIDPEYVRYRDYVETARELVDELRE--QGADLIIALTHMRLPN-----D-K---RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred cc-cCCCCcceEcCHHHHHHHHHHHHHh--CCCCEEEEEeccCchh-----h-H---HHHHhCCCCceEEecccceeE
Confidence 00 1111111112233444444433332 2346899999987531 1 2 333343 59999999999765
No 57
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.65 E-value=1.7e-07 Score=92.38 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHH-HHHHHHHHHhc--------------CCCCceEEE
Q 006340 61 DFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEY-QNVMQDVIKRS--------------GLEKSIFYD 125 (649)
Q Consensus 61 ~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y-~~vl~~L~~~~--------------~l~~~p~~~ 125 (649)
.+++..+......+||.|+++|||+|.+... .+||..+ ++..+.+.... .-.+++++.
T Consensus 31 YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~-------D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 31 FLGHIVSMMQFWLKPDAVVVLGDLFSSQWID-------DEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccCCCccc-------HHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 4566665545668999999999999875321 2455333 33222221100 001368999
Q ss_pred ecCCCCCC
Q 006340 126 IRGNHDNF 133 (649)
Q Consensus 126 I~GNHD~~ 133 (649)
|+||||.-
T Consensus 104 V~GNHDIG 111 (193)
T cd08164 104 IAGNHDVG 111 (193)
T ss_pred ECCcccCC
Confidence 99999984
No 58
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.58 E-value=2.6e-07 Score=85.65 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=21.1
Q ss_pred hhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 237 GRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 237 ~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.+.+.+++.++++++++|||+|....
T Consensus 80 ~~~l~~~l~~~~~~~vl~GH~H~~~~ 105 (129)
T cd07403 80 FEAFLDFIDRFRPKLFIHGHTHLNYG 105 (129)
T ss_pred HHHHHHHHHHHCCcEEEEcCcCCCcC
Confidence 35677788888899999999997753
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.56 E-value=2.6e-06 Score=88.20 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCCCC----CCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhc
Q 006340 41 IWAVQLSDLHFSVHH----PDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRS 116 (649)
Q Consensus 41 ~~fv~ISDlHls~~~----~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~ 116 (649)
++++|+||+|..-.. ..-..++..++++ +++.++++++.+||+++........ + -+..++.++.
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~-~~~~~~~l~l~~GD~~~gs~~~~~~--~-------g~~~~~~ln~-- 68 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKE-MNKLDNDLLVDAGDAIQGLPISDLD--K-------GETIIKIMNA-- 68 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHH-HHhcCCEEEEeCCCcCCCchhhhhc--C-------CcHHHHHHHh--
Confidence 479999999954221 1124567777744 4333678999999999865421100 0 1123444443
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCchhhhcccc-----cc-cccC-CCCccceEE-EEeC-CeeEEEEEecCCCccCCCC
Q 006340 117 GLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHS-----IN-GQLG-RKQNVNSVT-VQIG-DEKHLFVGFDSTMSVGLRG 187 (649)
Q Consensus 117 ~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys-----~~-~~l~-~~~~~~~~~-~~~~-~g~~~fIglD~~~~pG~~~ 187 (649)
+ +..+ .+.||||...- .+...+..+... .+ .... ....+.+|. .+.+ +-++.|+|+-+...+....
T Consensus 69 -~-g~d~-~~~GNHefd~G--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~ 143 (257)
T cd07408 69 -V-GYDA-VTPGNHEFDYG--LDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTH 143 (257)
T ss_pred -c-CCcE-EccccccccCC--HHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccC
Confidence 2 2234 46799996421 111111111110 00 0000 011122333 3556 7789999996543332222
Q ss_pred CCCCCCCCCHHHHHHHHHH-HhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhC-CceEEEeCcccCCC
Q 006340 188 PTNLFGHPADQLLTEIDSE-LSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKH-SLSAYLCGHLHTRF 261 (649)
Q Consensus 188 p~~~~G~l~~~qL~wL~~~-L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~-~v~l~L~GHtH~~~ 261 (649)
|.+..|.--.+..+.+++. ..+.++ .+.+.+|++.|.+.......... .++.++. ++++++.||+|...
T Consensus 144 ~~~~~~~~~~d~~~~~~~~~v~~l~~--~~~D~iIvl~H~G~~~~~~~~~~---~~la~~~~giDvIigGH~H~~~ 214 (257)
T cd07408 144 PKNVKDVTFEDPIEEAKKVIVAALKA--KGADVIVALGHLGVDRTSSPWTS---TELAANVTGIDLIIDGHSHTTI 214 (257)
T ss_pred ccccCCcEEecHHHHHHHHHHHHHHh--CCCCEEEEEeCcCcCCCCCCccH---HHHHHhCCCceEEEeCCCcccc
Confidence 3222221111223334333 222221 23468999999876542111111 2333343 59999999999875
No 60
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.55 E-value=6.9e-06 Score=85.41 Aligned_cols=192 Identities=13% Similarity=0.134 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCCCCCC----------------CcHHHHHHHHHHHHhcc-CCcEE-EEcCCCCCCCCcchhhhhhhhHHH
Q 006340 41 IWAVQLSDLHFSVHHP----------------DRASDFKRIVGPALSMI-SPSLV-LITGDLTDGKSKDLLTMKQNEVEW 102 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~----------------~~~~~l~~~i~~~l~~~-kPD~V-IitGDLtd~~~~~~~~s~Q~e~eW 102 (649)
++|++++|+|-.-... .-..++...+ +.+++. .||.+ +.+||+.+........
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v-~~~~~~~~~~~l~l~~GD~~~gs~~~~~~-------- 71 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLI-KRIRAERNPNTLLLDGGDTWQGSGEALYT-------- 71 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHH-HHHHHhcCCCeEEEeCCCccCCChHHhhc--------
Confidence 4789999999752210 1135677777 445555 88977 5699999876431110
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccc--c-ccccC----CCCccceE-EEEeCCeeEEE
Q 006340 103 MEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHS--I-NGQLG----RKQNVNSV-TVQIGDEKHLF 174 (649)
Q Consensus 103 ~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys--~-~~~l~----~~~~~~~~-~~~~~~g~~~f 174 (649)
..+..++.++. .++.++.||||...-. +...+..++.. . ...+. ....+.++ ..+.++.++.+
T Consensus 72 -~g~~~~~~l~~------~g~da~~GNHefd~g~--~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgv 142 (264)
T cd07411 72 -RGQAMVDALNA------LGVDAMVGHWEFTYGP--ERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGV 142 (264)
T ss_pred -CChhHHHHHHh------hCCeEEecccccccCH--HHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEE
Confidence 01134444433 2455555999964211 01111111100 0 00000 00111123 34678889999
Q ss_pred EEecCCCccCCCCCCCCCCCC-CHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHh-CCceEE
Q 006340 175 VGFDSTMSVGLRGPTNLFGHP-ADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLK-HSLSAY 252 (649)
Q Consensus 175 IglD~~~~pG~~~p~~~~G~l-~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~-~~v~l~ 252 (649)
||+.+...+... +..+.+.+ -.+..+.+++.+.+..+ ..+...+|++.|.+... + . ++.++ .+++++
T Consensus 143 iG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~iI~l~H~g~~~-----~-~---~la~~~~~iDli 211 (264)
T cd07411 143 IGQTFPYVPIAN-PPRFTPGLTFGIREEELQEVVVKLRR-EEGVDVVVLLSHNGLPV-----D-V---ELAERVPGIDVI 211 (264)
T ss_pred EEeccCCccccc-CcCCCCCcEECCHHHHHHHHHHHHHH-hCCCCEEEEEecCCchh-----h-H---HHHhcCCCCcEE
Confidence 999765433211 11111111 11233444444333221 12346899999987531 1 1 23333 359999
Q ss_pred EeCcccCCC
Q 006340 253 LCGHLHTRF 261 (649)
Q Consensus 253 L~GHtH~~~ 261 (649)
++||.|...
T Consensus 212 lgGH~H~~~ 220 (264)
T cd07411 212 LSGHTHERT 220 (264)
T ss_pred EeCcccccc
Confidence 999999764
No 61
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.39 E-value=1.3e-05 Score=99.39 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=111.5
Q ss_pred ceEEEEeC--CCCC----CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEE-cCCCCCCCCcchhhhhhhh
Q 006340 27 GRRVIQLR--EGPE----HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLI-TGDLTDGKSKDLLTMKQNE 99 (649)
Q Consensus 27 ~~~~~~~~--~~p~----~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIi-tGDLtd~~~~~~~~s~Q~e 99 (649)
.++++.++ +.|. ..++++|++|+|. .. ....++...+ +.+++.+|+.+++ +||+++....... .+
T Consensus 641 ~~~~i~l~~~~~~~~~~~~~l~Il~~nD~Hg-~l--~g~~r~~~~i-~~~r~~~~~~l~ld~GD~~~gs~~~~~--~~-- 712 (1163)
T PRK09419 641 GAYKLNFVDEAEPEKKDNWELTILHTNDFHG-HL--DGAAKRVTKI-KEVKEENPNTILVDAGDVYQGSLYSNL--LK-- 712 (1163)
T ss_pred EEEEEecCCCcccccCCceEEEEEEEeeccc-CC--CCHHHHHHHH-HHHHhhCCCeEEEecCCCCCCcchhhh--cC--
Confidence 35666665 5553 2399999999994 32 2234677777 4455668888766 9999976532110 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhh------------hcc--c---ccc---cccCC-CC
Q 006340 100 VEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDF------------FSK--H---SIN---GQLGR-KQ 158 (649)
Q Consensus 100 ~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~------------~~~--y---s~~---~~l~~-~~ 158 (649)
.+..++.++. +. .-+.++||||...-.. ...+. |.+ + +.+ ..-+. ..
T Consensus 713 -----g~~~~~~ln~---lg--~d~~~~GNHEfd~g~~--~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~ 780 (1163)
T PRK09419 713 -----GLPVLKMMKE---MG--YDASTFGNHEFDWGPD--VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVS 780 (1163)
T ss_pred -----ChHHHHHHhC---cC--CCEEEecccccccChH--HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCcccc
Confidence 1133444433 21 3466999999742110 00000 000 1 000 00000 00
Q ss_pred ccc-eEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCch
Q 006340 159 NVN-SVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSG 237 (649)
Q Consensus 159 ~~~-~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~ 237 (649)
... ....+.++.++.|||+-+...+....|.+..|.-=.+..+.+++..++.+++ .+.+.+|+++|......... ..
T Consensus 781 ~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~-~~~D~VV~LsH~G~~~d~~~-~~ 858 (1163)
T PRK09419 781 WAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEK-EKVDAIIALTHLGSNQDRTT-GE 858 (1163)
T ss_pred ccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhh-cCCCEEEEEecCCccccccc-cc
Confidence 111 2345678889999999654433333332222211112333444444444311 23469999999876532111 11
Q ss_pred hHHHHHHHhC-CceEEEeCcccCCC
Q 006340 238 RSLQDIFLKH-SLSAYLCGHLHTRF 261 (649)
Q Consensus 238 ~~l~~ll~~~-~v~l~L~GHtH~~~ 261 (649)
.+..++.++- ++++++.||+|...
T Consensus 859 ~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 859 ITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred cHHHHHHHhCCCCCEEEeCCCCccc
Confidence 2345666654 59999999999875
No 62
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.36 E-value=2.1e-05 Score=82.98 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCCCCC---------CcHHHHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP---------DRASDFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQ 110 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~---------~~~~~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~ 110 (649)
++++|++|+|- ...+ .-..++..++++ +++..+ .+++..||++....... ...+ .+ ..++
T Consensus 1 i~il~tnD~Hg-~~~~~~~~~~~~~gG~arl~~~i~~-~r~~~~~~l~ld~GD~~~gs~~~s-~~~~----g~---~~~~ 70 (288)
T cd07412 1 VQILAINDFHG-RLEPPGKVVTVPAGGAAYLAAYLDE-ARAQNPNSLFVSAGDLIGASPFES-ALLQ----DE---PTIE 70 (288)
T ss_pred CeEEEEecccc-CccCCCCccccccccHHHHHHHHHH-HHhcCCCeEEEeCCcccccccchh-hccc----CC---cHHH
Confidence 47999999993 3322 124567777744 444455 48999999996543210 0000 00 2333
Q ss_pred HHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhh----------------c--ccc---cc--cccCCCCccce-EEEE
Q 006340 111 DVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFF----------------S--KHS---IN--GQLGRKQNVNS-VTVQ 166 (649)
Q Consensus 111 ~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~----------------~--~ys---~~--~~l~~~~~~~~-~~~~ 166 (649)
.++. + + .=..++||||...-.. ...+.. + ++. .+ ..-.....+.+ ...+
T Consensus 71 ~~n~---~-g-~Da~t~GNHefd~G~~--~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~ 143 (288)
T cd07412 71 ALNA---M-G-VDASAVGNHEFDEGYA--ELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKD 143 (288)
T ss_pred HHHh---h-C-CeeeeecccccccCHH--HHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEE
Confidence 3333 2 1 2246789999742100 000000 0 010 00 00000111122 3356
Q ss_pred eCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCC----chhHHHH
Q 006340 167 IGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSH----SGRSLQD 242 (649)
Q Consensus 167 ~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~----~~~~l~~ 242 (649)
.++.++.|||+-+...+....|.+..|.--.+..+.+++.++++++ .+.+.+|++.|.......... ...+..+
T Consensus 144 ~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~--~~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~ 221 (288)
T cd07412 144 VGGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKA--GGVDAIVVLAHEGGSTKGGDDTCSAASGPIAD 221 (288)
T ss_pred ECCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCCCCccccccChhHHH
Confidence 7788999999943332222222222221112234455555555442 134689999997654311110 0113445
Q ss_pred HHHh--CCceEEEeCcccCCC
Q 006340 243 IFLK--HSLSAYLCGHLHTRF 261 (649)
Q Consensus 243 ll~~--~~v~l~L~GHtH~~~ 261 (649)
++.+ .+++++++||+|...
T Consensus 222 l~~~~~~~iD~IlgGHsH~~~ 242 (288)
T cd07412 222 IVNRLDPDVDVVFAGHTHQAY 242 (288)
T ss_pred HHhhcCCCCCEEEeCccCccc
Confidence 5554 359999999999875
No 63
>PRK09453 phosphodiesterase; Provisional
Probab=98.29 E-value=1.9e-06 Score=84.55 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
||+++|||+|... ..+++++ +.++..+||.++++||+++.+...... .+.+ -.++++.+.+ + +
T Consensus 1 mri~viSD~Hg~~------~~~~~~l-~~~~~~~~d~ii~lGDi~~~~~~~~~~-~~~~-----~~~~~~~l~~---~-~ 63 (182)
T PRK09453 1 MKLMFASDTHGSL------PATEKAL-ELFAQSGADWLVHLGDVLYHGPRNPLP-EGYA-----PKKVAELLNA---Y-A 63 (182)
T ss_pred CeEEEEEeccCCH------HHHHHHH-HHHHhcCCCEEEEcccccccCcCCCCc-cccC-----HHHHHHHHHh---c-C
Confidence 6899999999532 3567776 445667899999999999865421110 0000 0134444443 2 2
Q ss_pred ceEEEecCCCCCC
Q 006340 121 SIFYDIRGNHDNF 133 (649)
Q Consensus 121 ~p~~~I~GNHD~~ 133 (649)
.+++.|+||||..
T Consensus 64 ~~v~~V~GNhD~~ 76 (182)
T PRK09453 64 DKIIAVRGNCDSE 76 (182)
T ss_pred CceEEEccCCcch
Confidence 4899999999974
No 64
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.28 E-value=9.6e-06 Score=87.79 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCCCCCCC-----------cHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHH
Q 006340 38 EHVIWAVQLSDLHFSVHHPD-----------RASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQ 106 (649)
Q Consensus 38 ~~~~~fv~ISDlHls~~~~~-----------~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~ 106 (649)
++.+|++.++|+|+-...+. +.-.+++.......-.|||.+++.|||+|.+.... ++||+.+.
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~------~eEf~~~~ 119 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAG------DEEFKKRY 119 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCC------hHHHHHHH
Confidence 46799999999999653321 11234444433333579999999999999765321 35786665
Q ss_pred HHHHHHHHhcCCCCceEEEecCCCCCC
Q 006340 107 NVMQDVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 107 ~vl~~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
+-++++-... ..+++..++||||.-
T Consensus 120 ~RfkkIf~~k--~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 120 ERFKKIFGRK--GNIKVIYIAGNHDIG 144 (410)
T ss_pred HHHHHhhCCC--CCCeeEEeCCccccc
Confidence 5566664422 246999999999984
No 65
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.23 E-value=1.3e-06 Score=84.85 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=47.9
Q ss_pred EEEcCCCCCCCC---------CCc--HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 006340 44 VQLSDLHFSVHH---------PDR--ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDV 112 (649)
Q Consensus 44 v~ISDlHls~~~---------~~~--~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L 112 (649)
+++||+|++... |.. .+.++++. +.+++.+||.++++||+++....... .++.... +..+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~-~~~~~~~~d~lii~GDl~~~~~~~~~------~~~~~~~--~~~~ 71 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLD-RLIEEYGPERLIILGDLKHSFGGLSR------QEFEEVA--FLRL 71 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHH-HHHHhcCCCEEEEeCcccccccccCH------HHHHHHH--HHHh
Confidence 479999999642 111 12345554 55667899999999999987653211 1111111 1111
Q ss_pred HHhcCCCCceEEEecCCCCCC
Q 006340 113 IKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 113 ~~~~~l~~~p~~~I~GNHD~~ 133 (649)
. ..+.+++.++||||..
T Consensus 72 ~----~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 72 L----AKDVDVILIRGNHDGG 88 (172)
T ss_pred c----cCCCeEEEEcccCccc
Confidence 1 2356999999999985
No 66
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.21 E-value=4.4e-05 Score=80.19 Aligned_cols=191 Identities=19% Similarity=0.169 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCCCC--C-------------CcHHHHHHHHHHHHhccCCc-EEEEcCCCCCCCCcchhhhhhhhHHHHH
Q 006340 41 IWAVQLSDLHFSVHH--P-------------DRASDFKRIVGPALSMISPS-LVLITGDLTDGKSKDLLTMKQNEVEWME 104 (649)
Q Consensus 41 ~~fv~ISDlHls~~~--~-------------~~~~~l~~~i~~~l~~~kPD-~VIitGDLtd~~~~~~~~s~Q~e~eW~~ 104 (649)
++|+|.+|+|-.-.. . .-..++...+++ +++..|+ +++-+||.++........ +-+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~-~r~~~~~~l~ld~GD~~~gs~~~~~~--~g~----- 72 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKE-LRAENPNVLFLNAGDAFQGTLWYTLY--KGN----- 72 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHH-HHhcCCCEEEEeCCCCCCCcchhhhc--CCh-----
Confidence 479999999964211 0 124567777744 4455677 556699998765421110 101
Q ss_pred HHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcc--c---ccc-cccC----CCCccce-EEEEeCCeeEE
Q 006340 105 YQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSK--H---SIN-GQLG----RKQNVNS-VTVQIGDEKHL 173 (649)
Q Consensus 105 Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~--y---s~~-~~l~----~~~~~~~-~~~~~~~g~~~ 173 (649)
..++.++. + +.. ..++||||...-. +...+.... + +.+ .... ....+.+ ..++.++.++.
T Consensus 73 --~~~~~ln~---~-g~D-~~~lGNHefd~G~--~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIg 143 (281)
T cd07409 73 --ADAEFMNL---L-GYD-AMTLGNHEFDDGV--EGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIG 143 (281)
T ss_pred --HHHHHHHh---c-CCC-EEEeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEE
Confidence 22333332 2 123 4467999975211 111111111 1 000 0000 0011122 34567888999
Q ss_pred EEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHh-CCceEE
Q 006340 174 FVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLK-HSLSAY 252 (649)
Q Consensus 174 fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~-~~v~l~ 252 (649)
|+++-+...+....| ..|.--.+..+.+++.+++++++ +...+|++.|..... + .++.++ .+++++
T Consensus 144 viG~~~~~~~~~~~~--~~~~~~~d~~~~~~~~v~~lr~~--~~D~II~l~H~G~~~-----d----~~la~~~~giD~I 210 (281)
T cd07409 144 IIGYTTPDTTELSSP--GGKVKFLDEIEAAQKEADKLKAQ--GVNKIIALSHSGYEV-----D----KEIARKVPGVDVI 210 (281)
T ss_pred EEEEecCcccccccC--CCceEECCHHHHHHHHHHHHHhc--CCCEEEEEeccCchh-----H----HHHHHcCCCCcEE
Confidence 999965443221111 11211122345566666555432 346899999987531 1 233333 359999
Q ss_pred EeCcccCCC
Q 006340 253 LCGHLHTRF 261 (649)
Q Consensus 253 L~GHtH~~~ 261 (649)
++||+|...
T Consensus 211 iggH~H~~~ 219 (281)
T cd07409 211 VGGHSHTFL 219 (281)
T ss_pred EeCCcCccc
Confidence 999999875
No 67
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.21 E-value=5.2e-05 Score=73.82 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHH-HHHhcCC
Q 006340 40 VIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQD-VIKRSGL 118 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~-L~~~~~l 118 (649)
.|+++.|||+|..... .++.. +.....++|+||++||.+....... +.. +
T Consensus 1 ~m~ilviSDtH~~~~~------~~~~~-~~~~~~~~d~vih~GD~~~~~~~~~----------------l~~~~------ 51 (172)
T COG0622 1 MMKILVISDTHGPLRA------IEKAL-KIFNLEKVDAVIHAGDSTSPFTLDA----------------LEGGL------ 51 (172)
T ss_pred CcEEEEEeccCCChhh------hhHHH-HHhhhcCCCEEEECCCcCCccchHH----------------hhccc------
Confidence 3799999999987531 22333 3345679999999999998776421 111 1
Q ss_pred CCceEEEecCCCCCC
Q 006340 119 EKSIFYDIRGNHDNF 133 (649)
Q Consensus 119 ~~~p~~~I~GNHD~~ 133 (649)
..+++.|.||.|..
T Consensus 52 -~~~i~~V~GN~D~~ 65 (172)
T COG0622 52 -AAKLIAVRGNCDGE 65 (172)
T ss_pred -ccceEEEEccCCCc
Confidence 24899999999986
No 68
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.17 E-value=4.8e-05 Score=71.38 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCCCC-----C-CcHHHHHHHH-HHHHhccCC-cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 006340 42 WAVQLSDLHFSVHH-----P-DRASDFKRIV-GPALSMISP-SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 42 ~fv~ISDlHls~~~-----~-~~~~~l~~~i-~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
.+-++||+|++... | .+.+..++.+ ....+..+| |.+.++||++....+.. .|..++++|
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~-----------~a~~IlerL- 72 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRER-----------AAGLILERL- 72 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhh-----------HHHHHHHHc-
Confidence 46789999998764 2 2334445444 333455677 78999999998766432 244566553
Q ss_pred HhcCCCCceEEEecCCCCCCC
Q 006340 114 KRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~~ 134 (649)
++ ....|+||||...
T Consensus 73 -----nG-rkhlv~GNhDk~~ 87 (186)
T COG4186 73 -----NG-RKHLVPGNHDKCH 87 (186)
T ss_pred -----CC-cEEEeeCCCCCCc
Confidence 33 4588999999874
No 69
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.14 E-value=6.1e-06 Score=84.69 Aligned_cols=84 Identities=26% Similarity=0.289 Sum_probs=49.1
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhcc-----CCcEEEEcCCCCCCCCcc---h--hhhhhhhHHHHHHHHHHHHHH
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMI-----SPSLVLITGDLTDGKSKD---L--LTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~-----kPD~VIitGDLtd~~~~~---~--~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
++|||+|++..... ...++.++ +.++.. +||.++++||++|..... . .......+.++...+.++++.
T Consensus 2 ~~iSDlHl~~~~~~-~~~~~~l~-~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 79 (243)
T cd07386 2 VFISDVHVGSKTFL-EDAFEKFV-RWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP 79 (243)
T ss_pred EEecccCCCchhhh-HHHHHHHH-HHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc
Confidence 79999999764321 12344444 444443 569999999999974210 0 000111122333444444432
Q ss_pred HhcCCCCceEEEecCCCCCCC
Q 006340 114 KRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~~ 134 (649)
+++|++.++||||...
T Consensus 80 -----~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 -----SHIKIIIIPGNHDAVR 95 (243)
T ss_pred -----cCCeEEEeCCCCCccc
Confidence 2479999999999853
No 70
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.07 E-value=0.00017 Score=79.43 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=42.4
Q ss_pred CCceEEEEEcCCCCCCCCC------CcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcch
Q 006340 38 EHVIWAVQLSDLHFSVHHP------DRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDL 92 (649)
Q Consensus 38 ~~~~~fv~ISDlHls~~~~------~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~ 92 (649)
++.+||+.-||.|++.... +....|+++| +.+...++|+|++.|||++...++.
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl-~iA~e~~VDmiLlGGDLFHeNkPSr 70 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEIL-EIAQENDVDMILLGGDLFHENKPSR 70 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHH-HHHHhcCCcEEEecCcccccCCccH
Confidence 4689999999999987642 2234577888 5566789999999999998877654
No 71
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.06 E-value=5.2e-06 Score=84.39 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCCCCC-------CcH----HHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP-------DRA----SDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVM 109 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~-------~~~----~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl 109 (649)
-+.++|||+|++.... -.. +.++++. +.++..+||.++++||+.+..... .+|+...+.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~-~li~~~~~d~vIi~GDl~h~~~~~--------~~~~~~~~~l 85 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERAL-SIADKYGIEALIINGDLKHEFKKG--------LEWRFIREFI 85 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHH-HHHhhcCCCEEEEcCccccccCCh--------HHHHHHHHHH
Confidence 3578999999986421 111 2334443 444567899999999999876532 1233344444
Q ss_pred HHHHHhcCCCCceEEEecCCCCCC
Q 006340 110 QDVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 110 ~~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
+++ ..+++.|+||||..
T Consensus 86 ~~~-------~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 86 EVT-------FRDLILIRGNHDAL 102 (225)
T ss_pred Hhc-------CCcEEEECCCCCCc
Confidence 432 14899999999975
No 72
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.03 E-value=0.00026 Score=81.42 Aligned_cols=199 Identities=14% Similarity=0.118 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCCCCCCC----cHHHHHHHHHHHHhc-----cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHHPD----RASDFKRIVGPALSM-----ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQ 110 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~----~~~~l~~~i~~~l~~-----~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~ 110 (649)
.+.|+|++|+|-.-.... -..++..++++ +++ ...-+++-.||............. +..++
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~-~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g---------~~~i~ 103 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQ-IRKEVAAEGGSVLLLSGGDINTGVPESDLQDA---------EPDFR 103 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHH-HHHHhhccCCCEEEEcCCccccceEhhhhcCC---------chhHH
Confidence 589999999997533111 24455666633 321 234588999998875432111000 01233
Q ss_pred HHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcc------cc---cc--cccCCCCccce-EEEEeCCeeEEEEEec
Q 006340 111 DVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSK------HS---IN--GQLGRKQNVNS-VTVQIGDEKHLFVGFD 178 (649)
Q Consensus 111 ~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~------ys---~~--~~l~~~~~~~~-~~~~~~~g~~~fIglD 178 (649)
-++. + + .=..++||||... + .+.+++ +. .+ ..-.....+.+ ...+.++-++.|||+-
T Consensus 104 ~mN~---~-g-~Da~tlGNHEFD~-----G-~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~ 172 (551)
T PRK09558 104 GMNL---I-G-YDAMAVGNHEFDN-----P-LSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLT 172 (551)
T ss_pred HHhc---C-C-CCEEcccccccCc-----C-HHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEe
Confidence 3332 2 1 2244679999642 1 111111 10 00 00000111223 3456788899999995
Q ss_pred CCCccCCCCCCCCCC-CCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC-CCchhHHHHHHHhC---CceEEE
Q 006340 179 STMSVGLRGPTNLFG-HPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS-SHSGRSLQDIFLKH---SLSAYL 253 (649)
Q Consensus 179 ~~~~pG~~~p~~~~G-~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~-~~~~~~l~~ll~~~---~v~l~L 253 (649)
+...+....|.+..+ .+. +..+.+++..++.+++ .+.+.+|+++|........ .++...-.++.++- ++++++
T Consensus 173 t~~~~~~~~~~~~~~~~f~-d~~e~a~~~v~~Lk~~-~~~D~IV~LsH~G~~~~~~~~~~~~~d~~la~~~~~~~IDvIl 250 (551)
T PRK09558 173 TEDTAKIGNPEYFTDIEFR-DPAEEAKKVIPELKQT-EKPDVIIALTHMGHYDDGEHGSNAPGDVEMARSLPAGGLDMIV 250 (551)
T ss_pred ccccccccCCCCcCCceEC-CHHHHHHHHHHHHHhc-cCCCEEEEEeccccccCCccCCCCccHHHHHHhCCccCceEEE
Confidence 433332222311111 111 2233344444443311 2356899999977642111 01111123445543 699999
Q ss_pred eCcccCCC
Q 006340 254 CGHLHTRF 261 (649)
Q Consensus 254 ~GHtH~~~ 261 (649)
.||+|...
T Consensus 251 gGHsH~~~ 258 (551)
T PRK09558 251 GGHSQDPV 258 (551)
T ss_pred eCCCCccc
Confidence 99999764
No 73
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.99 E-value=0.00039 Score=72.35 Aligned_cols=190 Identities=13% Similarity=0.070 Sum_probs=92.1
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHH--HHhccCCcEEEEcCCCCCCCCcchhhhhh------hhHHHHHHHHHHHHHHH
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGP--ALSMISPSLVLITGDLTDGKSKDLLTMKQ------NEVEWMEYQNVMQDVIK 114 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~--~l~~~kPD~VIitGDLtd~~~~~~~~s~Q------~e~eW~~Y~~vl~~L~~ 114 (649)
|++.+|+|-.- ..+.+.+.. ..+..++|++|++||+......+...+.. ...+|..| ++....
T Consensus 1 i~v~Gd~HG~~------~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~---~~g~~~ 71 (262)
T cd00844 1 IAVEGCCHGEL------DKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKY---YSGEKK 71 (262)
T ss_pred CEEEecCCccH------HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHH---hcCCcc
Confidence 46789999621 223332311 11235799999999997554332211111 12233222 221111
Q ss_pred hcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccccccCCCCcc---ceEEEEeCCeeEEEEEecCCCccCCCC-CCC
Q 006340 115 RSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSINGQLGRKQNV---NSVTVQIGDEKHLFVGFDSTMSVGLRG-PTN 190 (649)
Q Consensus 115 ~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~~~l~~~~~~---~~~~~~~~~g~~~fIglD~~~~pG~~~-p~~ 190 (649)
...|++.|.||||..+. +.....-... ....+ ....+..+ .+.+.++.......... +..
T Consensus 72 ----~p~~t~fi~GNHE~~~~---------l~~l~~gg~v-~~Ni~~Lg~~~v~~~~--GlrIaGLsG~~~~~~~~~~~~ 135 (262)
T cd00844 72 ----APILTIFIGGNHEASNY---------LWELPYGGWV-APNIYYLGYAGVVNFG--GLRIAGLSGIYKSHDYRKGHF 135 (262)
T ss_pred ----CCeeEEEECCCCCCHHH---------HHhhcCCCee-cCcEEEecCCCEEEEC--CeEEEEecccccccccccccc
Confidence 13578999999997531 1111000000 00000 01233343 36677665432111000 000
Q ss_pred CCCCCCHHHHHHHH-------HHHhcccccCCCCceEEEEEecCCCccCC---------------------CCchhHHHH
Q 006340 191 LFGHPADQLLTEID-------SELSQWNSQSTKPVTKITFGHFPVSFSAS---------------------SHSGRSLQD 242 (649)
Q Consensus 191 ~~G~l~~~qL~wL~-------~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~---------------------~~~~~~l~~ 242 (649)
.....+++++..+- ..|... +...-|+++|.|+..... ....+.+.+
T Consensus 136 ~~~~~t~~~~rs~y~~r~~~~~kl~~~-----~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ 210 (262)
T cd00844 136 ERPPYSEDTKRSAYHVRNIEVFKLKQL-----KQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEE 210 (262)
T ss_pred cCCCCCHHHHHHhhhhhHHHHHHHHhc-----CCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHH
Confidence 11234666554321 112211 113579999998663211 112346788
Q ss_pred HHHhCCceEEEeCcccCCCC
Q 006340 243 IFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 243 ll~~~~v~l~L~GHtH~~~g 262 (649)
++++.+-++.+|||.|....
T Consensus 211 ll~~lkPryhf~gH~H~~f~ 230 (262)
T cd00844 211 LLKHLKPRYWFSAHLHVKFA 230 (262)
T ss_pred HHHHhCCCEEEEecCCcccc
Confidence 99999999999999998764
No 74
>PHA02239 putative protein phosphatase
Probab=97.96 E-value=1.8e-05 Score=81.04 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhcc-CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMI-SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~-kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
|++++|||+|.. ...|+++++...+.. ..|.++++||++|.+..... .+..+++.+. .
T Consensus 1 m~~~~IsDIHG~------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~----------v~~~l~~~~~-----~ 59 (235)
T PHA02239 1 MAIYVVPDIHGE------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKD----------VVNYIFDLMS-----N 59 (235)
T ss_pred CeEEEEECCCCC------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHH----------HHHHHHHHhh-----c
Confidence 589999999943 245777774322233 35999999999998865321 1222222211 1
Q ss_pred CceEEEecCCCCCC
Q 006340 120 KSIFYDIRGNHDNF 133 (649)
Q Consensus 120 ~~p~~~I~GNHD~~ 133 (649)
..+++.++||||..
T Consensus 60 ~~~~~~l~GNHE~~ 73 (235)
T PHA02239 60 DDNVVTLLGNHDDE 73 (235)
T ss_pred CCCeEEEECCcHHH
Confidence 24789999999973
No 75
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.95 E-value=3.1e-05 Score=87.74 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHh---------ccCCcEEEEcCCCCCCCCcchh--hhhhhhHHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHHPDRASDFKRIVGPALS---------MISPSLVLITGDLTDGKSKDLL--TMKQNEVEWMEYQNV 108 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~---------~~kPD~VIitGDLtd~~~~~~~--~s~Q~e~eW~~Y~~v 108 (649)
.++++++||+|++.... ....++.++ +.++ ..+||.++++||+++....... ......+-.+.|+.+
T Consensus 243 ~~~i~~ISDlHlgs~~~-~~~~l~~li-~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 243 KVYAVFISDVHVGSKEF-LEDAFEKFI-DWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred ccEEEEEcccCCCCcch-hHHHHHHHH-HHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 48999999999987432 122455665 4455 5689999999999996431100 000001112223333
Q ss_pred HHHHHHhcCCCCceEEEecCCCCCCC
Q 006340 109 MQDVIKRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 109 l~~L~~~~~l~~~p~~~I~GNHD~~~ 134 (649)
.+.+... ....|++.++||||...
T Consensus 321 ~~~L~~L--~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 321 AEYLKQI--PEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHhh--hcCCeEEEecCCCcchh
Confidence 3333332 13469999999999853
No 76
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.91 E-value=0.00012 Score=82.16 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchh---------------hhhhhhHH-
Q 006340 38 EHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLL---------------TMKQNEVE- 101 (649)
Q Consensus 38 ~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~---------------~s~Q~e~e- 101 (649)
.+.++|+..|+-+.... +.....+.++..+||++|++||.+........ ......++
T Consensus 103 ~~~~r~a~~SC~~~~~~-------~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~y 175 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDG-------YFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDY 175 (453)
T ss_dssp ---EEEEEE----CCC----------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHH
T ss_pred CCceEEEEECCCCcccC-------hHHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHH
Confidence 34699999999986421 12333333333689999999999865531000 00112222
Q ss_pred ---HHHHH--HHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCch-------h----------hhcccccccccCCCCc
Q 006340 102 ---WMEYQ--NVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSF-------D----------FFSKHSINGQLGRKQN 159 (649)
Q Consensus 102 ---W~~Y~--~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~-------~----------~~~~ys~~~~l~~~~~ 159 (649)
|+.|. .-++++. ..+|++.|.=+||..+-...++.. + .|..|.........+.
T Consensus 176 R~~y~~~~~~p~l~~~~-----~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~ 250 (453)
T PF09423_consen 176 RRRYRQYRSDPDLRRLH-----ANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGD 250 (453)
T ss_dssp HHHHHHHHT-HHHHHHH-----HHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTT
T ss_pred HHHHHHHcCCHHHHHHh-----hcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCC
Confidence 22222 1223332 246999999999996543322211 0 1111211110000000
Q ss_pred cceEEEEeCCee-EEEEEecCCCccCCCC-C----------CCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecC
Q 006340 160 VNSVTVQIGDEK-HLFVGFDSTMSVGLRG-P----------TNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFP 227 (649)
Q Consensus 160 ~~~~~~~~~~g~-~~fIglD~~~~pG~~~-p----------~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P 227 (649)
...+...+..|+ +.|+.+|.-.+..... + ....-.+.++|.+||++.|++.. ..+.|+..-.|
T Consensus 251 ~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~-----a~~kvi~s~v~ 325 (453)
T PF09423_consen 251 QGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQ-----ATWKVIGSSVP 325 (453)
T ss_dssp B----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH-------SSEEEEE-SS-
T ss_pred CCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCC-----CcEEEEEeCCc
Confidence 011222233345 9999999876554211 0 01123688999999999998643 35788887666
Q ss_pred CCccC-----------------CCCchhHHHHHHHhCCc--eEEEeCcccCCCC
Q 006340 228 VSFSA-----------------SSHSGRSLQDIFLKHSL--SAYLCGHLHTRFG 262 (649)
Q Consensus 228 ~~~~~-----------------~~~~~~~l~~ll~~~~v--~l~L~GHtH~~~g 262 (649)
+.... ....+++|.+.|++.++ .++|||-.|....
T Consensus 326 ~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~ 379 (453)
T PF09423_consen 326 FSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAA 379 (453)
T ss_dssp -S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEE
T ss_pred eecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchhee
Confidence 54211 11234678899988775 5999999998863
No 77
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.90 E-value=0.00059 Score=71.88 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCCCCC----CcHHHHHHHHHHHHhc-----cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHP----DRASDFKRIVGPALSM-----ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQD 111 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~----~~~~~l~~~i~~~l~~-----~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~ 111 (649)
++++|.+|+|-.-... .-..++..++++ +++ ...-+++-.||........... + . +..++.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~-~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~--~----g---~~~~~~ 70 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDG-VRREVAAQGGYVLLLSGGDINTGVPESDLQ--D----A---EPDFRG 70 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHH-HHHHhhccCCCEEEEeCCCcCCCchhHHhc--C----c---chHHHH
Confidence 4799999999653211 123455666633 322 2345899999998554321110 0 0 112333
Q ss_pred HHHhcCCCCceEEEecCCCCCCCCCCCCCchhhh--ccccc-cccc---CCCCccce-EEEEeCCeeEEEEEecCCCccC
Q 006340 112 VIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFF--SKHSI-NGQL---GRKQNVNS-VTVQIGDEKHLFVGFDSTMSVG 184 (649)
Q Consensus 112 L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~--~~ys~-~~~l---~~~~~~~~-~~~~~~~g~~~fIglD~~~~pG 184 (649)
++. +. .=..++||||...-.. ...+.. .++.. ...+ .....+.+ ..++.++-++.|+++-+...+.
T Consensus 71 ~n~---~g--~Da~~~GNHEfD~G~~--~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~ 143 (285)
T cd07405 71 MNL---VG--YDAMAVGNHEFDNPLE--VLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAK 143 (285)
T ss_pred HHh---hC--CcEEeecccccccCHH--HHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEeccccccc
Confidence 332 11 2244679999752110 000000 01100 0000 00111222 3455678899999995443332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC---C-CchhHHHHHHHhCCceEEEeCcccCC
Q 006340 185 LRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS---S-HSGRSLQDIFLKHSLSAYLCGHLHTR 260 (649)
Q Consensus 185 ~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~---~-~~~~~l~~ll~~~~v~l~L~GHtH~~ 260 (649)
...|.+..+..=.+.++.+++.+++.++ .+.+.+|++.|........ . ....++.+.+...++++++.||+|..
T Consensus 144 ~~~~~~~~~~~f~d~~~~~~~~v~~lk~--~~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 144 IGNPAYFEGIEFRPPIHEAKEVVPELKQ--EKPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred ccCcCCcCCcEEcCHHHHHHHHHHHHHH--cCCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 1122111121111233334444444432 1346899999987643110 0 01123333332246999999999987
Q ss_pred CC
Q 006340 261 FG 262 (649)
Q Consensus 261 ~g 262 (649)
..
T Consensus 222 ~~ 223 (285)
T cd07405 222 VC 223 (285)
T ss_pred cc
Confidence 63
No 78
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.90 E-value=2.1e-05 Score=76.14 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=44.4
Q ss_pred EEEcCCCCCCCCCC--------cHH-HHHHHHHHHHhc--cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 006340 44 VQLSDLHFSVHHPD--------RAS-DFKRIVGPALSM--ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDV 112 (649)
Q Consensus 44 v~ISDlHls~~~~~--------~~~-~l~~~i~~~l~~--~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L 112 (649)
..+||+|++..... ..+ ..++++ +.+++ .++|.|+++||+++...... +.+.+++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~d~vi~~GDl~~~~~~~~------------~~~~l~~- 67 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALI-RNWNETVGPDDTVYHLGDFSFGGKAGT------------ELELLSR- 67 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHH-HHHhhhcCCCCEEEEeCCCCCCCChHH------------HHHHHHh-
Confidence 47999999986421 112 233444 44433 37899999999999765321 1123333
Q ss_pred HHhcCCCCceEEEecCCCCCC
Q 006340 113 IKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 113 ~~~~~l~~~p~~~I~GNHD~~ 133 (649)
+ +.|++.|+||||..
T Consensus 68 -----~-~~~~~~v~GNHD~~ 82 (168)
T cd07390 68 -----L-NGRKHLIKGNHDSS 82 (168)
T ss_pred -----C-CCCeEEEeCCCCch
Confidence 2 24899999999975
No 79
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00011 Score=80.61 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc-----cCCcEEEEcCCCCCCCCc-----chhhhhhhhHHHHHHHH
Q 006340 38 EHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSM-----ISPSLVLITGDLTDGKSK-----DLLTMKQNEVEWMEYQN 107 (649)
Q Consensus 38 ~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~-----~kPD~VIitGDLtd~~~~-----~~~~s~Q~e~eW~~Y~~ 107 (649)
++.+++++|||+|.+... -....|.+++ +.++. .+...++++||++|.-.. +........+.++...+
T Consensus 223 ~e~v~v~~isDih~GSk~-F~~~~f~~fi-~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~ 300 (481)
T COG1311 223 DERVYVALISDIHRGSKE-FLEDEFEKFI-DWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAE 300 (481)
T ss_pred CcceEEEEEeeeecccHH-HHHHHHHHHH-HHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHH
Confidence 356999999999998642 1223566666 44543 245789999999995421 11111111222333444
Q ss_pred HHHHHHHhcCCCCceEEEecCCCCCCC
Q 006340 108 VMQDVIKRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 108 vl~~L~~~~~l~~~p~~~I~GNHD~~~ 134 (649)
.+.++ .+.+.++.+|||||...
T Consensus 301 ~L~~v-----p~~I~v~i~PGnhDa~r 322 (481)
T COG1311 301 FLDQV-----PEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHhhC-----CCCceEEEecCCCCccc
Confidence 44443 24568999999999863
No 80
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.80 E-value=3.9e-05 Score=77.56 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCCCCC---------CC-cHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHH---------PD-RASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVM 109 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~---------~~-~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl 109 (649)
.-+.+.+||+|++... |. ..+.+.+.+.+.++..+|+-+|+.||+-++-.... ..||...+.++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~------~~e~~~~~~f~ 92 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSL------RQEKEEVREFL 92 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccc------cccHHHHHHHH
Confidence 3578999999998653 21 23455666656677899999999999998776532 23566666666
Q ss_pred HHHHHhcCCCCceEEEecCCCCCC
Q 006340 110 QDVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 110 ~~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
+.+.. .-|..++||||..
T Consensus 93 ~~~~~------~evi~i~GNHD~~ 110 (235)
T COG1407 93 ELLDE------REVIIIRGNHDNG 110 (235)
T ss_pred HHhcc------CcEEEEeccCCCc
Confidence 65432 2499999999986
No 81
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.68 E-value=7.2e-05 Score=78.28 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=48.7
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
|+++.|||+|-.. ..|++++.+ ++ ..++|.++++||++|.+.... ++++.+.+ +
T Consensus 1 M~~~vIGDIHG~~------~~l~~ll~~-~~~~~~~D~li~lGDlVdrGp~s~--------------~vl~~l~~---l- 55 (275)
T PRK00166 1 MATYAIGDIQGCY------DELQRLLEK-IDFDPAKDTLWLVGDLVNRGPDSL--------------EVLRFVKS---L- 55 (275)
T ss_pred CcEEEEEccCCCH------HHHHHHHHh-cCCCCCCCEEEEeCCccCCCcCHH--------------HHHHHHHh---c-
Confidence 5789999999543 457777733 43 246899999999999887542 35555544 2
Q ss_pred CceEEEecCCCCCC
Q 006340 120 KSIFYDIRGNHDNF 133 (649)
Q Consensus 120 ~~p~~~I~GNHD~~ 133 (649)
+.++..|+||||..
T Consensus 56 ~~~~~~VlGNHD~~ 69 (275)
T PRK00166 56 GDSAVTVLGNHDLH 69 (275)
T ss_pred CCCeEEEecChhHH
Confidence 23688999999984
No 82
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.66 E-value=0.001 Score=82.99 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCCCCC-------CC---cHHHHHHHHHHHHhccCCcEEE-EcCCCCCCCCcchhhhhhhhHHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHH-------PD---RASDFKRIVGPALSMISPSLVL-ITGDLTDGKSKDLLTMKQNEVEWMEYQNV 108 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~-------~~---~~~~l~~~i~~~l~~~kPD~VI-itGDLtd~~~~~~~~s~Q~e~eW~~Y~~v 108 (649)
.++|++.+|+|-.-.. +. -..++..+++ .+++..|+.++ -.||++...................-+..
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~-~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~ 119 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIK-KARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPM 119 (1163)
T ss_pred EEEEEEEecccccccccccccCCCCCCcCHHHHHHHHH-HHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHH
Confidence 5899999999965221 11 1346677774 35555676555 59999986642100000000000000123
Q ss_pred HHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccc-------ccc---CCCCccceEE-EEe---------C
Q 006340 109 MQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSIN-------GQL---GRKQNVNSVT-VQI---------G 168 (649)
Q Consensus 109 l~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~-------~~l---~~~~~~~~~~-~~~---------~ 168 (649)
++.++. +. .=..++||||... + .+.+.+.... ... .....+.+|. .+. +
T Consensus 120 i~~mN~---lg--yDa~~lGNHEFd~-----G-~~~L~~~~~~a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~ 188 (1163)
T PRK09419 120 IKAMNA---LG--YDAGTLGNHEFNY-----G-LDFLDGTIKGANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQ 188 (1163)
T ss_pred HHHHhh---cC--ccEEeeccccccc-----C-HHHHHHHHhcCCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCC
Confidence 344433 21 2355799999642 1 1112111000 000 0011122333 334 5
Q ss_pred CeeEEEEEecCCCccCCCCCCCCCCCC-CHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC-CCchhHHHHHHHh
Q 006340 169 DEKHLFVGFDSTMSVGLRGPTNLFGHP-ADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS-SHSGRSLQDIFLK 246 (649)
Q Consensus 169 ~g~~~fIglD~~~~pG~~~p~~~~G~l-~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~-~~~~~~l~~ll~~ 246 (649)
+-++.|||+-+...+....+ +..|.+ -.+..+-+++.+++.+++ ..+.+|++.|........ ........++.++
T Consensus 189 gvkIgiiG~~~p~~~~~~~~-~~~g~~~~~d~v~~~~~~v~~lk~~--gaDvII~l~H~G~~~~~~~~~~en~~~~la~~ 265 (1163)
T PRK09419 189 GVKVGYIGFVPPQIMTWDKK-NLKGKVEVKNIVEEANKTIPEMKKG--GADVIVALAHSGIESEYQSSGAEDSVYDLAEK 265 (1163)
T ss_pred CeEEEEEecCCcchhhcchh-hccCcEEECCHHHHHHHHHHHHHhc--CCCEEEEEeccCcCCCCCCCCcchHHHHHHHh
Confidence 66889999854222211111 122311 122344455555544322 346899999987654221 1122234566655
Q ss_pred C-CceEEEeCcccCCC
Q 006340 247 H-SLSAYLCGHLHTRF 261 (649)
Q Consensus 247 ~-~v~l~L~GHtH~~~ 261 (649)
- ++++++.||+|...
T Consensus 266 ~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 266 TKGIDAIVAGHQHGLF 281 (1163)
T ss_pred CCCCcEEEeCCCcccc
Confidence 4 59999999999985
No 83
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.0012 Score=75.26 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCCCCC---CC------cHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 006340 39 HVIWAVQLSDLHFSVHH---PD------RASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVM 109 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~---~~------~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl 109 (649)
..++|+|.+|+|-.-.. .. ........+++.-++.+..++|-.||+.+....... ..+ .+.--+++
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~-~~~----g~~~~~~m 99 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY-LTK----GEPTVDLL 99 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc-ccC----CChHHHHH
Confidence 46999999999976551 11 122344555333234456789999999998543211 000 01111333
Q ss_pred HHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccc---------cc--cc-cCCCCccc-eEEEEeCCeeEEEEE
Q 006340 110 QDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHS---------IN--GQ-LGRKQNVN-SVTVQIGDEKHLFVG 176 (649)
Q Consensus 110 ~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys---------~~--~~-l~~~~~~~-~~~~~~~~g~~~fIg 176 (649)
..+ + .=....|||+...- .+.+.++. .+ .. -.....+. ....+.++-++.+||
T Consensus 100 N~m------~--yDa~tiGNHEFd~g------~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG 165 (517)
T COG0737 100 NAL------G--YDAMTLGNHEFDYG------LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIG 165 (517)
T ss_pred hhc------C--CcEEeecccccccC------HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEE
Confidence 332 1 33568999998531 11111111 00 00 00111112 345667788999999
Q ss_pred ecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCC-CchhHHHHHHHhCCceEEEeC
Q 006340 177 FDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASS-HSGRSLQDIFLKHSLSAYLCG 255 (649)
Q Consensus 177 lD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~-~~~~~l~~ll~~~~v~l~L~G 255 (649)
+.+...+....+....+..-.+..+++++.+.+.+.+ ..+.+|+++|-+....... ........+.. .++++++.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~--~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~~-~~iD~i~~G 242 (517)
T COG0737 166 LTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGE--GVDVIIALSHLGIEDDLELASEVPGDVDVAV-PGIDLIIGG 242 (517)
T ss_pred ecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhc--CCCEEEEEeccCcCccccccccccccccccc-cCcceEecc
Confidence 9754444333332122222235667777777766532 1468999999877632111 11111111111 239999999
Q ss_pred cccCCC
Q 006340 256 HLHTRF 261 (649)
Q Consensus 256 HtH~~~ 261 (649)
|+|...
T Consensus 243 H~H~~~ 248 (517)
T COG0737 243 HSHTVF 248 (517)
T ss_pred CCcccc
Confidence 999764
No 84
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.64 E-value=0.0015 Score=68.76 Aligned_cols=201 Identities=17% Similarity=0.109 Sum_probs=92.0
Q ss_pred CCCceEEEEEcCCCCCCC--C--C---CcHHHHHHHH---HHHHhccCCc-EEEEcCCCCCCCCcchhhhhhhhHHHHHH
Q 006340 37 PEHVIWAVQLSDLHFSVH--H--P---DRASDFKRIV---GPALSMISPS-LVLITGDLTDGKSKDLLTMKQNEVEWMEY 105 (649)
Q Consensus 37 p~~~~~fv~ISDlHls~~--~--~---~~~~~l~~~i---~~~l~~~kPD-~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y 105 (649)
|-..++|+|.+|+|-.-. . + .....+.+++ .+..++..|+ +++-.||..+......... ..++..
T Consensus 2 ~~~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~----~~g~~~ 77 (282)
T cd07407 2 PWGDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASP----PPGSYS 77 (282)
T ss_pred CcceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeec----CCChHH
Confidence 445689999999995321 1 1 1122333333 2222334555 6677999998653211000 011222
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCCCCCCCCC-CCCchhhhc--ccc---cc---ccc--CCCCccceE-EEEeC-CeeE
Q 006340 106 QNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPI-VGGSFDFFS--KHS---IN---GQL--GRKQNVNSV-TVQIG-DEKH 172 (649)
Q Consensus 106 ~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~-~~~~~~~~~--~ys---~~---~~l--~~~~~~~~~-~~~~~-~g~~ 172 (649)
.+++..+ . .=..++||||...-.. ++......+ ++. .+ ..- .......+| .++.+ +-++
T Consensus 78 ~~~mN~m------g--yDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kI 149 (282)
T cd07407 78 NPIFRMM------P--YDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRV 149 (282)
T ss_pred HHHHHhc------C--CcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEE
Confidence 2333332 1 2356899999853110 000000111 110 00 000 000111123 33444 7789
Q ss_pred EEEEecCCCccCCCCCCCCCCCCCH-HHH--HHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHH-HHHHhC-
Q 006340 173 LFVGFDSTMSVGLRGPTNLFGHPAD-QLL--TEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQ-DIFLKH- 247 (649)
Q Consensus 173 ~fIglD~~~~pG~~~p~~~~G~l~~-~qL--~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~-~ll~~~- 247 (649)
.+||+-+...+... ..-..+. +.+ +|+.++|++ .+.+.+|+++|...... .+. .+.. .+.++.
T Consensus 150 giiGltt~~~~~~~----~~~f~d~~~~~~~~~v~~~l~~-----~~~DvIIvlsH~G~~~d--~~~-~~~~~~la~~~~ 217 (282)
T cd07407 150 LAFGFLFDFKGAAN----GVTVQPVADVVQEPWFQDAINN-----EDVDLILVLGHMPVRDD--AEF-KVLHDAIRKIFP 217 (282)
T ss_pred EEEEEecccccCCC----CcEEcCHHHHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCCC--ccH-HHHHHHHHHhCC
Confidence 99999433221100 0001111 112 255555652 13468999999876532 111 1222 333334
Q ss_pred Cce-EEEeCcccCCC
Q 006340 248 SLS-AYLCGHLHTRF 261 (649)
Q Consensus 248 ~v~-l~L~GHtH~~~ 261 (649)
+++ ++++||+|...
T Consensus 218 ~id~~Ii~GHsH~~~ 232 (282)
T cd07407 218 DTPIQFLGGHSHVRD 232 (282)
T ss_pred CCCEEEEeCCccccc
Confidence 366 79999999763
No 85
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.64 E-value=9.8e-05 Score=73.97 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
|++.|||+|-. ...|++++ +.++ ..++|.++++||++|.+.... ++++.+..
T Consensus 2 ri~~isDiHg~------~~~l~~~l-~~~~~~~~~d~~~~~GD~v~~g~~~~--------------~~~~~l~~------ 54 (207)
T cd07424 2 RDFVVGDIHGH------YSLLQKAL-DAVGFDPARDRLISVGDLIDRGPESL--------------ACLELLLE------ 54 (207)
T ss_pred CEEEEECCCCC------HHHHHHHH-HHcCCCCCCCEEEEeCCcccCCCCHH--------------HHHHHHhc------
Confidence 68999999932 24677777 3343 246899999999999876431 34555432
Q ss_pred ceEEEecCCCCCC
Q 006340 121 SIFYDIRGNHDNF 133 (649)
Q Consensus 121 ~p~~~I~GNHD~~ 133 (649)
.+++.++||||..
T Consensus 55 ~~~~~v~GNhe~~ 67 (207)
T cd07424 55 PWFHAVRGNHEQM 67 (207)
T ss_pred CCEEEeECCChHH
Confidence 2689999999985
No 86
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.45 E-value=0.00026 Score=71.18 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=45.8
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHh--------ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHh
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALS--------MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKR 115 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~--------~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~ 115 (649)
+.|||+|-.. +.|++++ +.++ ..+.|.++++||++|.+...... . +.+.++...
T Consensus 1 ~vi~DIHG~~------~~l~~ll-~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~v----------l-~~l~~l~~~ 62 (208)
T cd07425 1 VAIGDLHGDL------DAFREIL-KGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEI----------L-WLLYKLEQE 62 (208)
T ss_pred CEEeCccCCH------HHHHHHH-HHCCCCCccccccCCCcEEEEECCCcCCCcCHHHH----------H-HHHHHHHHH
Confidence 4799999653 3677777 3333 24689999999999988653211 1 122222211
Q ss_pred cCCCCceEEEecCCCCCCC
Q 006340 116 SGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 116 ~~l~~~p~~~I~GNHD~~~ 134 (649)
..-.+.+++.++||||...
T Consensus 63 ~~~~~~~v~~l~GNHE~~~ 81 (208)
T cd07425 63 AAKAGGKVHFLLGNHELMN 81 (208)
T ss_pred HHhcCCeEEEeeCCCcHHH
Confidence 0011358999999999864
No 87
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.44 E-value=0.00019 Score=72.60 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=47.3
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc-cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSM-ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~-~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
++..|||+|-.. +.|++++ +.++. .+.|.++++||++|.+.... ++++.+.+
T Consensus 18 ri~vigDIHG~~------~~L~~lL-~~i~~~~~~D~li~lGDlvDrGp~s~--------------~vl~~l~~------ 70 (218)
T PRK11439 18 HIWLVGDIHGCF------EQLMRKL-RHCRFDPWRDLLISVGDLIDRGPQSL--------------RCLQLLEE------ 70 (218)
T ss_pred eEEEEEcccCCH------HHHHHHH-HhcCCCcccCEEEEcCcccCCCcCHH--------------HHHHHHHc------
Confidence 899999999653 4678887 33433 36799999999999987542 35555532
Q ss_pred ceEEEecCCCCCC
Q 006340 121 SIFYDIRGNHDNF 133 (649)
Q Consensus 121 ~p~~~I~GNHD~~ 133 (649)
..++.|+||||..
T Consensus 71 ~~~~~v~GNHE~~ 83 (218)
T PRK11439 71 HWVRAVRGNHEQM 83 (218)
T ss_pred CCceEeeCchHHH
Confidence 1467899999974
No 88
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.42 E-value=0.0034 Score=72.24 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCCCC---------------CCcHHHHHHHHHHHHhc-cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHH
Q 006340 41 IWAVQLSDLHFSVHH---------------PDRASDFKRIVGPALSM-ISPSLVLITGDLTDGKSKDLLTMKQNEVEWME 104 (649)
Q Consensus 41 ~~fv~ISDlHls~~~---------------~~~~~~l~~~i~~~l~~-~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~ 104 (649)
++|+|++|+|-.-.. ..-..++...+++ +++ .+..+++..||.+........ .+-+
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~-~r~~~~n~l~ldaGD~~~gs~~~~~--~~g~----- 72 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINK-LRAESKNALVLHAGDAIIGTLYFTL--FGGR----- 72 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHH-HHhhCCCeEEEECCCCCCCccchhh--cCCH-----
Confidence 479999999954211 0124456667743 433 334688999999876542211 1101
Q ss_pred HHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhc--ccc---cc---ccc-CCCCccc-eEEEEeCCeeEEE
Q 006340 105 YQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFS--KHS---IN---GQL-GRKQNVN-SVTVQIGDEKHLF 174 (649)
Q Consensus 105 Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~--~ys---~~---~~l-~~~~~~~-~~~~~~~~g~~~f 174 (649)
..++-++. +. .=..++||||...-.. ...+... ++. .+ ..- .....+. ...++.++.++.|
T Consensus 73 --~~i~~~N~---~g--~Da~~lGNHEFd~G~~--~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgi 143 (550)
T TIGR01530 73 --ADAALMNA---AG--FDFFTLGNHEFDAGNE--GLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAI 143 (550)
T ss_pred --HHHHHHhc---cC--CCEEEeccccccCCHH--HHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEE
Confidence 12333322 21 3466899999642110 0011111 111 00 000 0001112 3445678889999
Q ss_pred EEecCCCccC-CCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHh-CCceEE
Q 006340 175 VGFDSTMSVG-LRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLK-HSLSAY 252 (649)
Q Consensus 175 IglD~~~~pG-~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~-~~v~l~ 252 (649)
||+.+..... ...|.... .+ .+.++-+++..++.+++ ..+.+|+++|.-... + .++.++ .+++++
T Consensus 144 iGl~~~~~~~~~~~~~~~~-~f-~d~~~~~~~~v~~Lk~~--g~D~II~lsH~g~~~-----d----~~la~~~~~iD~I 210 (550)
T TIGR01530 144 IGLDTVKKTVESSSPGKDI-KF-IDEIAAAQIAANALKQQ--GINKIILLSHAGFEK-----N----CEIAQKINDIDVI 210 (550)
T ss_pred EEeecCcccccccCCCCce-EE-CCHHHHHHHHHHHHHhC--CCCEEEEEecCCcHH-----H----HHHHhcCCCCCEE
Confidence 9995422110 01111000 11 12233344433333321 246899999965421 1 233333 259999
Q ss_pred EeCcccCCCC
Q 006340 253 LCGHLHTRFG 262 (649)
Q Consensus 253 L~GHtH~~~g 262 (649)
++||+|...+
T Consensus 211 igGHsH~~~~ 220 (550)
T TIGR01530 211 VSGDSHYLLG 220 (550)
T ss_pred EeCCCCcccc
Confidence 9999999753
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.40 E-value=0.00026 Score=72.30 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc----------cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSM----------ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQ 110 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~----------~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~ 110 (649)
++++.|||+|-.. ..|++++++ +.- .+.|.++++||++|.+.... ++++
T Consensus 1 ~~i~vigDIHG~~------~~L~~ll~~-~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~--------------evl~ 59 (234)
T cd07423 1 GPFDIIGDVHGCY------DELEELLEK-LGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSP--------------EVLR 59 (234)
T ss_pred CCeEEEEECCCCH------HHHHHHHHH-cCCccccCccccCCCCCEEEEECCccCCCCCHH--------------HHHH
Confidence 4789999999643 467887733 411 13689999999999887532 2333
Q ss_pred HHHHhcCCCCceEEEecCCCCCC
Q 006340 111 DVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 111 ~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
.+.+.. .+..++.++||||..
T Consensus 60 ~l~~l~--~~~~~~~v~GNHE~~ 80 (234)
T cd07423 60 LVMSMV--AAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHh--hCCcEEEEECCcHHH
Confidence 333211 112578999999974
No 90
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.37 E-value=0.0093 Score=69.85 Aligned_cols=202 Identities=16% Similarity=0.194 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCCCCC-------CC---cHHHHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhh----hhhHHHHH
Q 006340 40 VIWAVQLSDLHFSVHH-------PD---RASDFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMK----QNEVEWME 104 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~-------~~---~~~~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~----Q~e~eW~~ 104 (649)
.++|++.+|+|-.-.. +. -..++..++++ +++..+ -+++-.||++........... +.+.
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~-~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~---- 99 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKA-ARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDV---- 99 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHH-HHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCc----
Confidence 5899999999965321 11 12456666633 443333 588999999986543110000 0000
Q ss_pred HHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccc-------ccc----CCCCccceEEE-Ee-----
Q 006340 105 YQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSIN-------GQL----GRKQNVNSVTV-QI----- 167 (649)
Q Consensus 105 Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~-------~~l----~~~~~~~~~~~-~~----- 167 (649)
+-.++.++. +. -=....||||... + .+++.+.... ... .....+.+|.+ +.
T Consensus 100 -~p~i~amN~---lg--yDa~tlGNHEFd~-----G-~~~L~~~~~~a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~ 167 (649)
T PRK09420 100 -HPVYKAMNT---LD--YDVGNLGNHEFNY-----G-LDYLKKALAGAKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDK 167 (649)
T ss_pred -chHHHHHHh---cC--CcEEeccchhhhc-----C-HHHHHHHHhcCCCCEEEEEEEecCCCCcccCCeEEEEEEeecc
Confidence 013444433 21 2355899999642 1 1122211000 000 01111223332 22
Q ss_pred CC----eeEEEEEecCCCccCCCCCCCCCCCCC-HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHH
Q 006340 168 GD----EKHLFVGFDSTMSVGLRGPTNLFGHPA-DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQD 242 (649)
Q Consensus 168 ~~----g~~~fIglD~~~~pG~~~p~~~~G~l~-~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ 242 (649)
++ -++-|||+=+...+....+ +..|.+. .+..+.+++...+.+++ ....+|++.|.........+..+....
T Consensus 168 ~G~~~~vkIGiIGl~~p~~~~w~~~-~~~g~v~~~D~ve~a~~~v~~Lk~~--gaDvII~LsH~G~~~d~~~~~aen~~~ 244 (649)
T PRK09420 168 DGKEHTIKIGYIGFVPPQIMVWDKA-NLEGKVTVRDITETARKYVPEMKEK--GADIVVAIPHSGISADPYKAMAENSVY 244 (649)
T ss_pred CCCccceEEEEEEecCccccccccc-cCcCceEECCHHHHHHHHHHHHHHc--CCCEEEEEecCCcCCCCccccccchhH
Confidence 22 3788999843222111111 2233221 23344455555544422 346899999987643211101111111
Q ss_pred HHHh-CCceEEEeCcccCCC
Q 006340 243 IFLK-HSLSAYLCGHLHTRF 261 (649)
Q Consensus 243 ll~~-~~v~l~L~GHtH~~~ 261 (649)
.+.+ -++++++.||+|...
T Consensus 245 ~l~~v~gID~Il~GHsH~~~ 264 (649)
T PRK09420 245 YLSEVPGIDAIMFGHSHAVF 264 (649)
T ss_pred HHhcCCCCCEEEeCCCCccC
Confidence 2344 359999999999875
No 91
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.33 E-value=0.0065 Score=70.89 Aligned_cols=204 Identities=16% Similarity=0.193 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCCCCC-------CC---cHHHHHHHHHHHHhcc-CCcEEEEcCCCCCCCCcchhhhhhh--hHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHH-------PD---RASDFKRIVGPALSMI-SPSLVLITGDLTDGKSKDLLTMKQN--EVEWMEYQ 106 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~-------~~---~~~~l~~~i~~~l~~~-kPD~VIitGDLtd~~~~~~~~s~Q~--e~eW~~Y~ 106 (649)
.++|+|.+|+|-.-.. +. -..++..++++ +++. ...+++-.||++...........+. +.+. +
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~-~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~---~ 77 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQ-ARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQM---H 77 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHH-HHhhCCCeEEEECCCcCCCccchhhhhhccccCCCc---C
Confidence 3799999999975321 11 12456667743 4333 3468899999998654321000000 0000 0
Q ss_pred HHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccc-------ccc----CCCCccceEEE-Ee-----C-
Q 006340 107 NVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSIN-------GQL----GRKQNVNSVTV-QI-----G- 168 (649)
Q Consensus 107 ~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~-------~~l----~~~~~~~~~~~-~~-----~- 168 (649)
-+++.++. +. .=....||||... + .+++.+.... ..+ .....+.+|.+ +. +
T Consensus 78 p~~~~mN~---lg--yDa~tlGNHEFd~-----G-~~~L~~~~~~a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G 146 (626)
T TIGR01390 78 PVYKAMNL---LK--YDVGNLGNHEFNY-----G-LPFLKQAIAAAKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDG 146 (626)
T ss_pred hHHHHHhh---cC--ccEEecccccccc-----c-HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCC
Confidence 12333332 21 2345899999532 1 1222211000 000 01112223333 22 2
Q ss_pred ---CeeEEEEEecCCCccCCCCCCCCCCCCC-HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHH
Q 006340 169 ---DEKHLFVGFDSTMSVGLRGPTNLFGHPA-DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIF 244 (649)
Q Consensus 169 ---~g~~~fIglD~~~~pG~~~p~~~~G~l~-~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll 244 (649)
+-++-|||+=+...+....+ +..|.+. .+.++-+++...+.+++ ..+.+|++.|............+.....+
T Consensus 147 ~~~~~kIGiIG~~~p~~~~~~~~-~~~g~v~~~d~veaa~~~v~~Lr~~--gaDvII~LsH~G~~~d~~~~~~en~~~~l 223 (626)
T TIGR01390 147 KPHTLKVGYIGFVPPQIMVWDKA-NLDGKVTTADIVDTARKYVPEMKAK--GADIIVALAHSGISADPYQPGAENSAYYL 223 (626)
T ss_pred CccceEEEEEEecCccccccccc-cccCceEECCHHHHHHHHHHHHHHc--CCCEEEEEeccCcCCCccccccchHHHHH
Confidence 23788999843322211111 1223211 22334444444444321 34689999998765321111111122234
Q ss_pred HhC-CceEEEeCcccCCC
Q 006340 245 LKH-SLSAYLCGHLHTRF 261 (649)
Q Consensus 245 ~~~-~v~l~L~GHtH~~~ 261 (649)
++- +++++++||+|...
T Consensus 224 ~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 224 TKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred hcCCCCCEEEcCCCCccC
Confidence 443 59999999999876
No 92
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.33 E-value=0.00038 Score=72.19 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=46.4
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCce
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p 122 (649)
..|||+|-.. ..|++++++ ++ ..+.|.++++||++|.+.... ++++.+.+ +. ..
T Consensus 2 yvIGDIHG~~------~~L~~LL~~-i~~~~~~D~Li~lGDlVdRGp~s~--------------evl~~l~~---l~-~~ 56 (257)
T cd07422 2 YAIGDIQGCY------DELQRLLEK-INFDPAKDRLWLVGDLVNRGPDSL--------------ETLRFVKS---LG-DS 56 (257)
T ss_pred EEEECCCCCH------HHHHHHHHh-cCCCCCCCEEEEecCcCCCCcCHH--------------HHHHHHHh---cC-CC
Confidence 5799999643 467888843 43 236799999999999987543 35555544 21 36
Q ss_pred EEEecCCCCCC
Q 006340 123 FYDIRGNHDNF 133 (649)
Q Consensus 123 ~~~I~GNHD~~ 133 (649)
+..|+||||..
T Consensus 57 v~~VlGNHD~~ 67 (257)
T cd07422 57 AKTVLGNHDLH 67 (257)
T ss_pred eEEEcCCchHH
Confidence 88999999985
No 93
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.31 E-value=0.00036 Score=70.61 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=46.5
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
|+..|||+|-. ...|++++.+ +. ..+.|.++++||++|.+.... ++++.+.+
T Consensus 16 ri~visDiHg~------~~~l~~~l~~-~~~~~~~d~l~~lGD~vdrG~~~~--------------~~l~~l~~------ 68 (218)
T PRK09968 16 HIWVVGDIHGE------YQLLQSRLHQ-LSFCPETDLLISVGDNIDRGPESL--------------NVLRLLNQ------ 68 (218)
T ss_pred eEEEEEeccCC------HHHHHHHHHh-cCCCCCCCEEEECCCCcCCCcCHH--------------HHHHHHhh------
Confidence 89999999954 2467777733 43 346899999999999887532 34554432
Q ss_pred ceEEEecCCCCCC
Q 006340 121 SIFYDIRGNHDNF 133 (649)
Q Consensus 121 ~p~~~I~GNHD~~ 133 (649)
..++.++||||..
T Consensus 69 ~~~~~v~GNHE~~ 81 (218)
T PRK09968 69 PWFISVKGNHEAM 81 (218)
T ss_pred CCcEEEECchHHH
Confidence 2467899999974
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.31 E-value=0.00037 Score=71.77 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc---------cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSM---------ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQD 111 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~---------~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~ 111 (649)
+++..|||+|-.. +.|++++ +.+.- .+-|.++++||++|.+..+. ++++.
T Consensus 1 ~~~~vIGDIHG~~------~~L~~lL-~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~--------------~vl~~ 59 (245)
T PRK13625 1 MKYDIIGDIHGCY------QEFQALT-EKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL--------------RMIEI 59 (245)
T ss_pred CceEEEEECccCH------HHHHHHH-HHcCCCcccCcccCCCCCEEEEECcccCCCcChH--------------HHHHH
Confidence 4789999999543 3577777 33321 12479999999999887543 23333
Q ss_pred HHHhcCCCCceEEEecCCCCCC
Q 006340 112 VIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 112 L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
+.+. .....++.++||||..
T Consensus 60 ~~~~--~~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 60 VWEL--VEKKAAYYVPGNHCNK 79 (245)
T ss_pred HHHH--hhCCCEEEEeCccHHH
Confidence 3221 1123789999999963
No 95
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.30 E-value=0.00045 Score=69.52 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=45.9
Q ss_pred EEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEE
Q 006340 45 QLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFY 124 (649)
Q Consensus 45 ~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~ 124 (649)
+|||+|-. ...|.+++ +.+...++|.++++||++|.+.... +++..+...... ..+++
T Consensus 2 ~igDiHg~------~~~l~~~l-~~~~~~~~d~li~lGD~vdrg~~~~--------------~~l~~l~~~~~~-~~~~~ 59 (225)
T cd00144 2 VIGDIHGC------LDDLLRLL-EKIGFPPNDKLIFLGDYVDRGPDSV--------------EVIDLLLALKIL-PDNVI 59 (225)
T ss_pred EEeCCCCC------HHHHHHHH-HHhCCCCCCEEEEECCEeCCCCCcH--------------HHHHHHHHhcCC-CCcEE
Confidence 68999943 24677777 4444567899999999999886532 233333332111 24799
Q ss_pred EecCCCCCCC
Q 006340 125 DIRGNHDNFG 134 (649)
Q Consensus 125 ~I~GNHD~~~ 134 (649)
.++||||...
T Consensus 60 ~l~GNHe~~~ 69 (225)
T cd00144 60 LLRGNHEDML 69 (225)
T ss_pred EEccCchhhh
Confidence 9999999853
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.28 E-value=0.02 Score=68.02 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=46.4
Q ss_pred CeeEEEEEecCCCccCCCCCCCCCCCCC-HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhC
Q 006340 169 DEKHLFVGFDSTMSVGLRGPTNLFGHPA-DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKH 247 (649)
Q Consensus 169 ~g~~~fIglD~~~~pG~~~p~~~~G~l~-~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~ 247 (649)
+-++-|||+-+...+....+ +..|.+. .+.++-+++...+.+++ ..+.+|++.|--..........+.....+++-
T Consensus 199 gvKIGiIGlttp~~~~w~~~-~~~g~v~f~D~veaa~~~v~~Lr~~--GaDvIIaLsH~G~~~d~~~~~~ena~~~l~~v 275 (780)
T PRK09418 199 KVKIGVMGFVPPQVMNWDKA-NLEGKVKAKDIVETAKKMVPKMKAE--GADVIVALAHSGVDKSGYNVGMENASYYLTEV 275 (780)
T ss_pred CceEEEEEeccccccccccc-cccCCeEECCHHHHHHHHHHHHHhc--CCCEEEEEeccCcccccccccchhhhHHHhcC
Confidence 44788999844332211111 2223221 22334445555444422 34689999997665321111111111113443
Q ss_pred -CceEEEeCcccCCCC
Q 006340 248 -SLSAYLCGHLHTRFG 262 (649)
Q Consensus 248 -~v~l~L~GHtH~~~g 262 (649)
+++++++||+|....
T Consensus 276 ~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 276 PGVDAVLMGHSHTEVK 291 (780)
T ss_pred CCCCEEEECCCCCccc
Confidence 599999999998864
No 97
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.26 E-value=0.013 Score=62.60 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc-----cCCcEEEEcCCCCCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSM-----ISPSLVLITGDLTDGKS 89 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~-----~kPD~VIitGDLtd~~~ 89 (649)
++|+|.+|+|-.-.......++...+++ +++ .+..+++-.||.+....
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~-~r~~~~~~~~~~l~ldaGD~~qGs~ 53 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNA-LKDEAAAEYDNTLTLSSGDNFIPGP 53 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHH-HHHhhhccCCCeEEEecCccccCch
Confidence 4799999999654333344566666633 332 23458999999987653
No 98
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.16 E-value=0.00077 Score=68.41 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=44.6
Q ss_pred EEEcCCCCCCCCCCcHHHHHHHHHHHHhcc--------CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHh
Q 006340 44 VQLSDLHFSVHHPDRASDFKRIVGPALSMI--------SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKR 115 (649)
Q Consensus 44 v~ISDlHls~~~~~~~~~l~~~i~~~l~~~--------kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~ 115 (649)
..|||+|-.. +.|++++.. +... ..|.++++||++|.+..+. ++++.+.+.
T Consensus 2 ~vIGDIHG~~------~~L~~lL~~-i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~--------------~vl~~l~~l 60 (222)
T cd07413 2 DFIGDIHGHA------EKLVVLLHK-LGYQELSGVYRHPERQVVFLGDLIDRGPEIR--------------ELLEIVKSM 60 (222)
T ss_pred EEEEeccCCH------HHHHHHHHH-cCCCccccccCCCCCEEEEeCcccCCCCCHH--------------HHHHHHHHh
Confidence 5799999643 467777733 4211 3589999999999987643 344444332
Q ss_pred cCCCCceEEEecCCCCCC
Q 006340 116 SGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 116 ~~l~~~p~~~I~GNHD~~ 133 (649)
. ....++.++||||..
T Consensus 61 ~--~~~~~~~l~GNHE~~ 76 (222)
T cd07413 61 V--DAGHALAVMGNHEFN 76 (222)
T ss_pred h--cCCCEEEEEccCcHH
Confidence 1 123688899999974
No 99
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.11 E-value=0.011 Score=70.60 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCCCCCC-------CC---cHHHHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhhhh-hHHHHHHHH
Q 006340 40 VIWAVQLSDLHFSVHH-------PD---RASDFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMKQN-EVEWMEYQN 107 (649)
Q Consensus 40 ~~~fv~ISDlHls~~~-------~~---~~~~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~-e~eW~~Y~~ 107 (649)
.++|++.+|+|-.-.. +. -..++..++++ +++..+ -+++-.||++.........+... ..+.+ -+-
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~-~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~-~~P 192 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEE-AKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGE-QHP 192 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHH-HHHhCCCEEEEecCCCCCCCcccchhhhccccccCc-chH
Confidence 4999999999975221 11 13355666633 444334 58899999998754211000000 00000 001
Q ss_pred HHHHHHHhcCCCCceEEEecCCCCCCCCCCCCCchhhhcccccc-------ccc----CCCCccceEEE-Ee-----CC-
Q 006340 108 VMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGGSFDFFSKHSIN-------GQL----GRKQNVNSVTV-QI-----GD- 169 (649)
Q Consensus 108 vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~~-------~~l----~~~~~~~~~~~-~~-----~~- 169 (649)
.++.++. +. .=...+||||... | .+++.+.... ... .....+.+|.+ +. ++
T Consensus 193 ~i~amN~---LG--yDA~tLGNHEFDy-----G-~d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~ 261 (814)
T PRK11907 193 MYAALEA---LG--FDAGTLGNHEFNY-----G-LDYLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGK 261 (814)
T ss_pred HHHHHhc---cC--CCEEEechhhccc-----C-HHHHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCc
Confidence 3343333 21 2355899999642 1 1222221000 000 00111223433 22 33
Q ss_pred ---eeEEEEEecCCCccCCCCCCCCCCCCC-HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCC---CCchhHHHH
Q 006340 170 ---EKHLFVGFDSTMSVGLRGPTNLFGHPA-DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSAS---SHSGRSLQD 242 (649)
Q Consensus 170 ---g~~~fIglD~~~~pG~~~p~~~~G~l~-~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~---~~~~~~l~~ 242 (649)
-++-|||+-+...+....+ +..|.+. .+..+.+++...+.+++ ..+.+|++.|.-...... .++. -.+
T Consensus 262 ~~~vKIGiIGlvtp~~~~w~~~-~l~g~v~f~D~veaa~~~v~~Lr~~--GaDvIIaLsH~G~~~d~~~~~~En~--~~~ 336 (814)
T PRK11907 262 KVTLNIGITGIVPPQILNWDKA-NLEGKVIVRDAVEAVRDIIPTMRAA--GADIVLVLSHSGIGDDQYEVGEENV--GYQ 336 (814)
T ss_pred ccceEEEEEEeCchhhhhcccc-cccCCeEECCHHHHHHHHHHHHHhc--CCCEEEEEeCCCcccccccccccch--hhH
Confidence 3688999844333221111 2223221 23344555555555422 346899999976543111 1111 122
Q ss_pred HHHhCCceEEEeCcccCCC
Q 006340 243 IFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 243 ll~~~~v~l~L~GHtH~~~ 261 (649)
+-+--++++++.||+|...
T Consensus 337 LA~v~GIDaIvgGHsH~~~ 355 (814)
T PRK11907 337 IASLSGVDAVVTGHSHAEF 355 (814)
T ss_pred HhcCCCCCEEEECCCCCcc
Confidence 2222369999999999875
No 100
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.04 E-value=0.0011 Score=69.30 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
|....|||+|-.. +.|++++ +.++ ..+.|-++++||++|.+.... ++++.+.+ +.
T Consensus 1 m~~YvIGDIHGc~------daL~~LL-~~i~f~~~~D~l~~lGDlVdRGP~sl--------------evL~~l~~---l~ 56 (279)
T TIGR00668 1 MATYLIGDLHGCY------DELQALL-ERVEFDPGQDTLWLTGDLVARGPGSL--------------EVLRYVKS---LG 56 (279)
T ss_pred CcEEEEEcccCCH------HHHHHHH-HHhCcCCCCCEEEEeCCccCCCCCHH--------------HHHHHHHh---cC
Confidence 3567899999653 4688888 4443 335689999999999987643 34444443 21
Q ss_pred CceEEEecCCCCCC
Q 006340 120 KSIFYDIRGNHDNF 133 (649)
Q Consensus 120 ~~p~~~I~GNHD~~ 133 (649)
..+..|.||||..
T Consensus 57 -~~~~~VlGNHD~~ 69 (279)
T TIGR00668 57 -DAVRLVLGNHDLH 69 (279)
T ss_pred -CCeEEEEChhHHH
Confidence 2466899999974
No 101
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.02 E-value=0.025 Score=58.71 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
|+++|+|+=-.+ .+ ..+.+.+.+..++.++|+++..||.+-.+..-. ....+.|... + .
T Consensus 1 ~ilfigdi~g~~---G~-~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~-------------~~~~~~L~~~-G---~ 59 (255)
T cd07382 1 KILFIGDIVGKP---GR-KAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT-------------PKIAKELLSA-G---V 59 (255)
T ss_pred CEEEEEeCCCHH---HH-HHHHHHHHHHHHHCCCCEEEECCccccCCCCCC-------------HHHHHHHHhc-C---C
Confidence 578999985432 22 356677755445678999999999987653211 0234444432 2 2
Q ss_pred eEEEecCCCCCCCCCCCCCchhhhcccc--c-ccccCCCCcc-ceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCH
Q 006340 122 IFYDIRGNHDNFGVPIVGGSFDFFSKHS--I-NGQLGRKQNV-NSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPAD 197 (649)
Q Consensus 122 p~~~I~GNHD~~~v~~~~~~~~~~~~ys--~-~~~l~~~~~~-~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~ 197 (649)
-++ ..|||+... +...+++.... . ...+...... +...++.++.++.++++-..... . .++
T Consensus 60 D~i-TlGNH~fD~----gel~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~--~-------~~~- 124 (255)
T cd07382 60 DVI-TMGNHTWDK----KEILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFM--P-------PLD- 124 (255)
T ss_pred CEE-EecccccCc----chHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCC--C-------cCC-
Confidence 344 559998653 11122222210 0 0011100011 13455677788999988422111 0 111
Q ss_pred HHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 198 QLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 198 ~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.-.+.+++.+++.++ +.+.+|+..|--.. + ....+...+ .-++++++.||+|....
T Consensus 125 ~P~~~~~~~v~~lk~---~~D~IIV~~H~g~t----s-Ek~ala~~l-dg~VdvIvGtHTHv~t~ 180 (255)
T cd07382 125 NPFRAADELLEELKE---EADIIFVDFHAEAT----S-EKIALGWYL-DGRVSAVVGTHTHVQTA 180 (255)
T ss_pred CHHHHHHHHHHHHhc---CCCEEEEEECCCCC----H-HHHHHHHhC-CCCceEEEeCCCCccCC
Confidence 223456666665542 34589999996321 1 111233222 22499999999998863
No 102
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.85 E-value=0.0027 Score=66.61 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=43.6
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc-----cCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSM-----ISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRS 116 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~-----~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~ 116 (649)
+++.|||+|-.. ..|++++...... ...+.+|++||++|.+.... ++++.+....
T Consensus 3 ~iyaIGDIHG~~------d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~--------------eVld~L~~l~ 62 (304)
T cd07421 3 VVICVGDIHGYI------SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETR--------------KVIDFLISLP 62 (304)
T ss_pred eEEEEEeccCCH------HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHH--------------HHHHHHHHhh
Confidence 688999999653 3566666332212 23578999999999987532 2233222211
Q ss_pred CC-CCceEEEecCCCCC
Q 006340 117 GL-EKSIFYDIRGNHDN 132 (649)
Q Consensus 117 ~l-~~~p~~~I~GNHD~ 132 (649)
.. +...++.++||||.
T Consensus 63 ~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 63 EKHPKQRHVFLCGNHDF 79 (304)
T ss_pred hcccccceEEEecCChH
Confidence 00 11257899999995
No 103
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.76 E-value=0.045 Score=57.10 Aligned_cols=178 Identities=13% Similarity=0.095 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
||+++++|+=-. +.+ ..+.+.+.+..++.++|+++.-||.+.++..-. . ...++|.+. +
T Consensus 1 m~ilfiGDi~G~---~Gr-~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~---~----------~~~~~L~~~-G--- 59 (266)
T TIGR00282 1 IKFLFIGDVYGK---AGR-KIVKNNLPQLKSKYQADLVIANGENTTHGKGLT---L----------KIYEFLKQS-G--- 59 (266)
T ss_pred CeEEEEEecCCH---HHH-HHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC---H----------HHHHHHHhc-C---
Confidence 689999999632 222 346667755445678999999999997653211 0 244455442 2
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhcccc-ccc--ccC--CCCccceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCC
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHS-ING--QLG--RKQNVNSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHP 195 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys-~~~--~l~--~~~~~~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l 195 (649)
.-+..+ |||....- ...++..+.. ..+ .+. ..+. +...++.++.++.++.+...... .| ..
T Consensus 60 vDviT~-GNH~~Dkg----e~~~~i~~~~~~lrpanyp~~~pG~-g~~i~~~nG~kiaVinl~G~~fm---~~-----~~ 125 (266)
T TIGR00282 60 VNYITM-GNHTWFQK----LILDVVINQKDLVRPLNFDTSFAGK-GSLVFEFNGAKIAVTNLQGTSVN---LP-----FK 125 (266)
T ss_pred CCEEEc-cchhccCc----HHHHHHhccccccccCCCCCCCCCC-CcEEEEECCEEEEEEECCCcccC---Cc-----cc
Confidence 355555 99987531 1111111110 000 000 1111 12445667778888776432211 01 10
Q ss_pred CHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 196 ADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 196 ~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.+.-.+.+++.+++.++ +.+.+|+..|--.. +.+.....+-+-+++++++-|+|....
T Consensus 126 ~~~Pf~~~d~~i~~lk~---~~d~IIVd~Haeat------sEK~a~~~~ldg~vsaVvGtHtHV~Ta 183 (266)
T TIGR00282 126 TTNPFKVLKELINMLKK---DCDLIFVDFHAETT------SEKNAFGMAFDGYVTAVVGTHTHVPTA 183 (266)
T ss_pred cCCHHHHHHHHHHhhhc---CCCEEEEEeCCCCH------HHHHHHHHHhCCCccEEEeCCCCCCCC
Confidence 12233445665655542 23589999995432 123445555566899999999998863
No 104
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.21 E-value=2.8e-05 Score=95.91 Aligned_cols=285 Identities=27% Similarity=0.330 Sum_probs=209.2
Q ss_pred eEEeecCCCCccccccccccccccccccccccccEEEEEEeCCCCeEEEEEEeCCcCCCchhhHHhhhccc--cCCCCCC
Q 006340 344 TIVVPTFPLDSRFMSRSSSQKYECEHMVAQSYATIRALVFSVSPILSVVAKVYDSRSGKHDLVMEELMRKR--TDNSSRG 421 (649)
Q Consensus 344 p~iliT~P~~~~~~~~~~~~~~~~~~~~~~~~~~IrvlvFs~s~~~~V~v~id~~~~~~~~~~~e~~~~~~--~~~~~~~ 421 (649)
-.++-+.|..++.+....-+..++.+...+.-.+++++.++......+..++..+.-.--..+.+.+|++. ......+
T Consensus 13 ~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1606)
T KOG0701|consen 13 LKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFMDLSSSGP 92 (1606)
T ss_pred cccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhhhcccccC
Confidence 34455666666665553211112212211222367777777776666655554433333334555566542 1223344
Q ss_pred CeeeeccCCCCCCCCCCCceEEEEEEEeCCCCceeeeeeeEEEcCcccccccccceeeeeecccchhhhhHHHHHHHHHH
Q 006340 422 DLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRLSSSELRPFSINGLSAKISWTWKEFFVMGCQWDTLYYPLLWFAMYFLF 501 (649)
Q Consensus 422 ~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (649)
. ...||+-.....+...+.+.+-...|-.+++...+.++++..+.+....|++-++.+|.++|.--+.++.| ..--++
T Consensus 93 ~-~s~pr~~~~~a~~~~~~~~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~~~~~~-~~~~~~ 170 (1606)
T KOG0701|consen 93 S-FSVPRILGLTASLLNDKFWLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEYGPLLI-NKDKLI 170 (1606)
T ss_pred C-CCcchhhhccCCCcCCCcchhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhhhhhhc-ccccee
Confidence 5 89999888888888889999999999999999999999999999888999999999999999999999988 555557
Q ss_pred HHHHHHHHHHHhhhhccccccccccCCcchhhhhheeeccccCchhhHHHHHHHHHhhccceeeEEeeCCcceEEEEEEE
Q 006340 502 SILIVPKALLILSKKQYTYKNFAANRGFINCIAWVLQELCKMHVVWYGILGYLFYLVLFPWFVGQVFTDGESWGYMTYMG 581 (649)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~pw~~g~~~~~~~~~~~~~~~g 581 (649)
.++++|...++-++.++........++..-+.-|..+-.+.+..+|.+=-.+..| -+|.+.+++-.-.|+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-------~~e~f~~~~~~~~~~~~- 242 (1606)
T KOG0701|consen 171 CVFLIPDCIVITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAELHY-------CEEVFSDSELRFLMSIP- 242 (1606)
T ss_pred EEeccCcceeeeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHHhhh-------hhhhcCcHHHHHHHhHH-
Confidence 7779999999988887766655556666667788999999999999998888888 89999998888888887
Q ss_pred EEEeecCCCCCceeecCCcEEEEEcceeeeehhHHHHHHHHHHhhhhhhh---hhccCCCCCchh
Q 006340 582 WVVRALDNQESHKYIGSPDVMVIVLPHIVFVVLPAILVSAALAAEKELYR---VSLSGKKEDDHE 643 (649)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 643 (649)
.+....-.-++++++.+|+|....|+-++.+++ .+..-+.+|+ ++ ...+|+...|+.
T Consensus 243 -~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~--~~~~~~v~k~--~l~~~~~l~~i~~~~~~ 302 (1606)
T KOG0701|consen 243 -RLLERLRDSKHEYIHQFEVLRKYEPHDVFRLIH--ESVCPLVDKE--YLEKIETLSGIIFVDQR 302 (1606)
T ss_pred -HHHHHhhhcchhhhcccceeeeecccccceeeh--hhcCchhhHH--HHHhhhhhhheeecccc
Confidence 444566667888999999999999999999999 4445555555 44 556777766643
No 105
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.16 E-value=0.021 Score=59.23 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc-----------cCCcEEEEcCCCCCCCCcchh-hh----------hhhh
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSM-----------ISPSLVLITGDLTDGKSKDLL-TM----------KQNE 99 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~-----------~kPD~VIitGDLtd~~~~~~~-~s----------~Q~e 99 (649)
+++.+||+|++... .....++.++ +.+.. .+...+|+.||.++....... .. ....
T Consensus 1 ~i~~vSgL~ig~~~-~~~~~l~ll~-d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T cd07387 1 YIALVSGLGLGGNA-ESSLSLQLLV-DWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASV 78 (257)
T ss_pred CEEEEcccccCCCc-cchHHHHHHH-HHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhH
Confidence 47899999999763 2223455554 44432 234579999999986542111 00 0012
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCC--CCCCchhhhcccccccccCCCCccceEEEEeCCeeEEEEEe
Q 006340 100 VEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVP--IVGGSFDFFSKHSINGQLGRKQNVNSVTVQIGDEKHLFVGF 177 (649)
Q Consensus 100 ~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~--~~~~~~~~~~~ys~~~~l~~~~~~~~~~~~~~~g~~~fIgl 177 (649)
+..+...+.+.++. ..+|+..+|||||.-+.. .-.-....|.+-.... ......|++.++.++ +.|++.
T Consensus 79 ~~~~~ld~~l~~l~-----~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~--~~~~vtNP~~~~i~g--~~vLgt 149 (257)
T cd07387 79 EAVKELDNFLSQLA-----SSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYS--TLNLVTNPYEFSIDG--VRVLGT 149 (257)
T ss_pred HHHHHHHHHHHhhh-----cCCeEEECCCCCCcccccCCCCCCCHHHhhcccccC--CcEEeCCCeEEEECC--EEEEEE
Confidence 22334445555553 346999999999986531 1101112221100000 122233466677654 566655
Q ss_pred cCCCccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 006340 178 DSTMSVGLRGPTNLFGHPADQLLTEIDSELS 208 (649)
Q Consensus 178 D~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~ 208 (649)
......... .+ ...++.++.|++.|+
T Consensus 150 sGqni~Di~---ky--~~~~~~l~~me~~L~ 175 (257)
T cd07387 150 SGQNVDDIL---KY--SSLESRLDILERTLK 175 (257)
T ss_pred CCCCHHHHH---Hh--CCCCCHHHHHHHHHH
Confidence 333211100 01 112455778888776
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.08 E-value=0.014 Score=61.23 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=46.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
+++.++|+|-.- .++.+++ +.......+-+++.||++|.+....+. . ..+..+.- ....
T Consensus 29 ~i~vvGDiHG~~------~~l~~ll-~~~~~~~~~~~vfLGD~VDrG~~s~e~----------l-~~l~~lk~---~~p~ 87 (271)
T smart00156 29 PVTVCGDIHGQF------DDLLRLF-DLNGPPPDTNYVFLGDYVDRGPFSIEV----------I-LLLFALKI---LYPN 87 (271)
T ss_pred CEEEEEeCcCCH------HHHHHHH-HHcCCCCCceEEEeCCccCCCCChHHH----------H-HHHHHHHh---cCCC
Confidence 588999999653 4667776 333344568899999999988754311 1 11222221 1123
Q ss_pred eEEEecCCCCCCC
Q 006340 122 IFYDIRGNHDNFG 134 (649)
Q Consensus 122 p~~~I~GNHD~~~ 134 (649)
.++.++||||...
T Consensus 88 ~v~llrGNHE~~~ 100 (271)
T smart00156 88 RVVLLRGNHESRS 100 (271)
T ss_pred CEEEEeccccHHH
Confidence 6899999999853
No 107
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=95.90 E-value=0.01 Score=59.31 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=51.3
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHh-ccCCcEEEEcCCCCCCCCcchhhh---hhhhHHHHHHHHHHHHHHHhcCC
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALS-MISPSLVLITGDLTDGKSKDLLTM---KQNEVEWMEYQNVMQDVIKRSGL 118 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~-~~kPD~VIitGDLtd~~~~~~~~s---~Q~e~eW~~Y~~vl~~L~~~~~l 118 (649)
|+.+||+|++... ...+.|++++ +.++ ..+|+.+|++|+.++......... .....+....+.+.+.+.+. .
T Consensus 1 Iv~~Sg~~~~~~~-~~~~~L~~~l-~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~ 76 (209)
T PF04042_consen 1 IVFASGPFLDSDN-LSLEPLRDLL-SGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESI--L 76 (209)
T ss_dssp EEEEES--CTTT--HHHHHHHHHH-HCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCC--H
T ss_pred CEEEecCccCCCH-hHHHHHHHHH-HhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhc--c
Confidence 6899999998532 2245677777 4455 778999999999999765422111 01222333344444444332 2
Q ss_pred CCceEEEecCCCCCCCC
Q 006340 119 EKSIFYDIRGNHDNFGV 135 (649)
Q Consensus 119 ~~~p~~~I~GNHD~~~v 135 (649)
+.+++..|||+||....
T Consensus 77 ~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 77 PSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CCSEEEEE--TTCTT-S
T ss_pred cccEEEEeCCCcccccc
Confidence 46799999999998754
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.71 E-value=0.023 Score=60.52 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=45.1
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
++..++|+|-.- .++.+++ +.......+-.+++||++|.+....+ ++..+.........
T Consensus 44 ~i~ViGDIHG~~------~dL~~l~-~~~g~~~~~~ylFLGDyVDRG~~s~E--------------vi~lL~~lki~~p~ 102 (305)
T cd07416 44 PVTVCGDIHGQF------YDLLKLF-EVGGSPANTRYLFLGDYVDRGYFSIE--------------CVLYLWALKILYPK 102 (305)
T ss_pred CEEEEEeCCCCH------HHHHHHH-HhcCCCCCceEEEECCccCCCCChHH--------------HHHHHHHHHhhcCC
Confidence 478899999643 3566666 33333345889999999999876432 22222211111123
Q ss_pred eEEEecCCCCCC
Q 006340 122 IFYDIRGNHDNF 133 (649)
Q Consensus 122 p~~~I~GNHD~~ 133 (649)
.++.++||||..
T Consensus 103 ~v~lLRGNHE~~ 114 (305)
T cd07416 103 TLFLLRGNHECR 114 (305)
T ss_pred CEEEEeCCCcHH
Confidence 689999999985
No 109
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.71 E-value=0.02 Score=61.30 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=45.7
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhcc-CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMI-SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~-kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
+++.++|+|-.- .+|.++++. .... ..+..+++||++|.+....+ ++.-+........
T Consensus 52 ~~~vvGDiHG~~------~dL~~il~~-~g~~~~~~~~lFLGDyVDRG~~s~E--------------vl~ll~~lk~~~p 110 (321)
T cd07420 52 QVTICGDLHGKL------DDLFLIFYK-NGLPSPENPYVFNGDFVDRGKRSIE--------------ILIILFAFFLVYP 110 (321)
T ss_pred CeEEEEeCCCCH------HHHHHHHHH-cCCCCccceEEEeccccCCCCCcHH--------------HHHHHHHHhhcCC
Confidence 679999999653 467777732 2111 22679999999999876432 2222222111122
Q ss_pred ceEEEecCCCCCCCC
Q 006340 121 SIFYDIRGNHDNFGV 135 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v 135 (649)
..++.++|||+...+
T Consensus 111 ~~v~llRGNHE~~~~ 125 (321)
T cd07420 111 NEVHLNRGNHEDHIM 125 (321)
T ss_pred CcEEEecCchhhhhh
Confidence 368999999998643
No 110
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.49 E-value=0.22 Score=50.83 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=57.4
Q ss_pred eEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCC-chhHH
Q 006340 162 SVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSH-SGRSL 240 (649)
Q Consensus 162 ~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~-~~~~l 240 (649)
...++.++.++.|+++-....+....+....+.......+.+++.++++++ +...+|++.|--......+. ...++
T Consensus 123 ~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~l 199 (239)
T cd07381 123 PAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQREL 199 (239)
T ss_pred cEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHH
Confidence 355677888999999965544322222111221222334455566665542 24689999997544322221 12345
Q ss_pred HHHHHhCCceEEEeCcccCCCC
Q 006340 241 QDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 241 ~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.+.+...++++++.||.|..++
T Consensus 200 a~~l~~~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 200 ARALIDAGADLVIGHHPHVLQG 221 (239)
T ss_pred HHHHHHCCCCEEEcCCCCcCCC
Confidence 5445556899999999998874
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.40 E-value=0.031 Score=58.96 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=44.8
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
.+..++|+|-.- .++.+++ +.......+-.+++||++|.+....+. + ..+..+.- ....
T Consensus 43 ~i~vvGDIHG~~------~dL~~ll-~~~~~~~~~~~lfLGDyVDRG~~s~ev----------l-~ll~~lk~---~~p~ 101 (285)
T cd07415 43 PVTVCGDIHGQF------YDLLELF-RVGGDPPDTNYLFLGDYVDRGYYSVET----------F-LLLLALKV---RYPD 101 (285)
T ss_pred CEEEEEeCCCCH------HHHHHHH-HHcCCCCCCeEEEEeEECCCCcCHHHH----------H-HHHHHHhh---cCCC
Confidence 378899999643 3566666 323233456889999999988754311 1 11222221 1224
Q ss_pred eEEEecCCCCCCC
Q 006340 122 IFYDIRGNHDNFG 134 (649)
Q Consensus 122 p~~~I~GNHD~~~ 134 (649)
.++.++||||...
T Consensus 102 ~v~llrGNHE~~~ 114 (285)
T cd07415 102 RITLLRGNHESRQ 114 (285)
T ss_pred cEEEEecccchHh
Confidence 7999999999854
No 112
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=95.38 E-value=0.011 Score=55.04 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=49.9
Q ss_pred cEEEEEEeCCC--CeEEEEEEeCCc-CCCchhhHHhhhccccCC-CCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCC
Q 006340 377 TIRALVFSVSP--ILSVVAKVYDSR-SGKHDLVMEELMRKRTDN-SSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMG 452 (649)
Q Consensus 377 ~IrvlvFs~s~--~~~V~v~id~~~-~~~~~~~~e~~~~~~~~~-~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G 452 (649)
.|+=.+|++.. |.+|+|++||+. |.++++....++.+. ++ .-+=.+|...|++.. ..|.+ .|.|+|+|..|
T Consensus 30 ~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~-g~~~~aW~~W~~~~~~~~-~~G~~---~i~~RA~D~~G 104 (131)
T PF03404_consen 30 TIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRY-GEARWAWRLWEYDWPPPS-LPGEY---TIMVRATDESG 104 (131)
T ss_dssp EEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHH-TS-TTS-EEEEEEEEECS-HCCEE---EEEEEEEETTS
T ss_pred EEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccc-cccCcccceeeeccCcCc-cccce---EEEEEEeeccc
Confidence 68889997776 999999999877 987755444332211 11 233468999995544 34666 79999999999
Q ss_pred Cceee
Q 006340 453 RLSSS 457 (649)
Q Consensus 453 ~~~~~ 457 (649)
.+.-.
T Consensus 105 ~~QP~ 109 (131)
T PF03404_consen 105 NVQPE 109 (131)
T ss_dssp -B--S
T ss_pred ccCCC
Confidence 98744
No 113
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.22 E-value=0.037 Score=58.61 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=44.8
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
.+..++|+|-.- .++.+++ +.......+-.++.||++|.+....+. . ..+..++- ....
T Consensus 51 ~i~viGDIHG~~------~~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~e~----------i-~ll~~lk~---~~p~ 109 (293)
T cd07414 51 PLKICGDIHGQY------YDLLRLF-EYGGFPPESNYLFLGDYVDRGKQSLET----------I-CLLLAYKI---KYPE 109 (293)
T ss_pred ceEEEEecCCCH------HHHHHHH-HhcCCCCcceEEEEeeEecCCCCcHHH----------H-HHHHHhhh---hCCC
Confidence 478899999543 3566666 333334457789999999988754321 1 11222211 1123
Q ss_pred eEEEecCCCCCCC
Q 006340 122 IFYDIRGNHDNFG 134 (649)
Q Consensus 122 p~~~I~GNHD~~~ 134 (649)
.++.++||||...
T Consensus 110 ~i~llrGNHE~~~ 122 (293)
T cd07414 110 NFFLLRGNHECAS 122 (293)
T ss_pred cEEEEecccchhh
Confidence 5899999999864
No 114
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.09 E-value=0.047 Score=59.59 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=44.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
+++.++|+|-.. .+|.+++. ....... +..+++||++|.+..... ++..+........
T Consensus 67 ~i~VvGDIHG~~------~dL~~ll~-~~g~~~~~~~ylFLGDyVDRGp~SlE--------------vl~lL~~lki~~p 125 (377)
T cd07418 67 EVVVVGDVHGQL------HDVLFLLE-DAGFPDQNRFYVFNGDYVDRGAWGLE--------------TFLLLLSWKVLLP 125 (377)
T ss_pred CEEEEEecCCCH------HHHHHHHH-HhCCCCCCceEEEeccccCCCCChHH--------------HHHHHHHHhhccC
Confidence 689999999653 35677763 2222222 458999999998875432 2222221111112
Q ss_pred ceEEEecCCCCCCC
Q 006340 121 SIFYDIRGNHDNFG 134 (649)
Q Consensus 121 ~p~~~I~GNHD~~~ 134 (649)
..++.++||||...
T Consensus 126 ~~v~lLRGNHE~~~ 139 (377)
T cd07418 126 DRVYLLRGNHESKF 139 (377)
T ss_pred CeEEEEeeeccccc
Confidence 36899999999854
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.02 E-value=0.041 Score=58.28 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCce
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p 122 (649)
+..++|+|-.- .++.+++ +.+.....+-.++.||++|.+.... +++..+..........
T Consensus 54 ~~ViGDIHG~~------~~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~--------------evl~ll~~lk~~~p~~ 112 (294)
T PTZ00244 54 VRVCGDTHGQY------YDLLRIF-EKCGFPPYSNYLFLGDYVDRGKHSV--------------ETITLQFCYKIVYPEN 112 (294)
T ss_pred ceeeccCCCCH------HHHHHHH-HHcCCCCcccEEEeeeEecCCCCHH--------------HHHHHHHHHhhccCCe
Confidence 67899999543 3566666 3232223356778999999987543 1222221111112247
Q ss_pred EEEecCCCCCCC
Q 006340 123 FYDIRGNHDNFG 134 (649)
Q Consensus 123 ~~~I~GNHD~~~ 134 (649)
++.++||||...
T Consensus 113 v~llrGNHE~~~ 124 (294)
T PTZ00244 113 FFLLRGNHECAS 124 (294)
T ss_pred EEEEecccchHh
Confidence 999999999753
No 116
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.86 E-value=0.058 Score=57.34 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=44.4
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCce
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSI 122 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p 122 (649)
+..++|+|-.- .++.+++ +.......+-.++.||++|.+....+ ++..+..........
T Consensus 45 i~vvGDIHG~~------~~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~e--------------vl~ll~~lk~~~p~~ 103 (303)
T PTZ00239 45 VNVCGDIHGQF------YDLQALF-KEGGDIPNANYIFIGDFVDRGYNSVE--------------TMEYLLCLKVKYPGN 103 (303)
T ss_pred EEEEEeCCCCH------HHHHHHH-HhcCCCCCceEEEeeeEcCCCCCHHH--------------HHHHHHHhhhcCCCc
Confidence 78899999643 3566666 32333445779999999999875431 222222111111236
Q ss_pred EEEecCCCCCCC
Q 006340 123 FYDIRGNHDNFG 134 (649)
Q Consensus 123 ~~~I~GNHD~~~ 134 (649)
++.++||||...
T Consensus 104 v~llrGNHE~~~ 115 (303)
T PTZ00239 104 ITLLRGNHESRQ 115 (303)
T ss_pred EEEEecccchHH
Confidence 899999999854
No 117
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.76 E-value=0.068 Score=57.19 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=44.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
.++.++|+|-.- .++.+++ +.......+-.++.||++|.+....+ ++..+.........
T Consensus 60 ~i~vvGDIHG~~------~dL~~l~-~~~g~~~~~~ylfLGDyVDRG~~s~e--------------vl~ll~~lki~~p~ 118 (320)
T PTZ00480 60 PLKICGDVHGQY------FDLLRLF-EYGGYPPESNYLFLGDYVDRGKQSLE--------------TICLLLAYKIKYPE 118 (320)
T ss_pred CeEEEeecccCH------HHHHHHH-HhcCCCCcceEEEeceecCCCCCcHH--------------HHHHHHHhcccCCC
Confidence 488899999542 3566666 32323345678899999998875431 22222211111123
Q ss_pred eEEEecCCCCCCC
Q 006340 122 IFYDIRGNHDNFG 134 (649)
Q Consensus 122 p~~~I~GNHD~~~ 134 (649)
.++.++||||...
T Consensus 119 ~v~llRGNHE~~~ 131 (320)
T PTZ00480 119 NFFLLRGNHECAS 131 (320)
T ss_pred ceEEEecccchhh
Confidence 6899999999854
No 118
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=94.55 E-value=0.23 Score=52.14 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=65.4
Q ss_pred ceEEEEeCCCCCCceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhc----cCCcEEEEcCCCCCCCCc-chhhhhhhhHH
Q 006340 27 GRRVIQLREGPEHVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSM----ISPSLVLITGDLTDGKSK-DLLTMKQNEVE 101 (649)
Q Consensus 27 ~~~~~~~~~~p~~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~----~kPD~VIitGDLtd~~~~-~~~~s~Q~e~e 101 (649)
.|+++-+++.+. ..+|+.+||+|+.. +...+.|+++++..-+. ..|-.+|+.|+.+..... .......+.+.
T Consensus 15 ~~~~~~~~~~~~-~~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~ 91 (291)
T PTZ00235 15 EEYEIIVRKNDK-RHNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKG 91 (291)
T ss_pred ceEEEEEecCCC-ceEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHH
Confidence 568888887765 57888889999987 55566788887443232 248999999999865411 01112223344
Q ss_pred HHHHHH-HHHHHHHhcCCCCceEEEecCCCCCCC
Q 006340 102 WMEYQN-VMQDVIKRSGLEKSIFYDIRGNHDNFG 134 (649)
Q Consensus 102 W~~Y~~-vl~~L~~~~~l~~~p~~~I~GNHD~~~ 134 (649)
++.+.. ++.+.... ++...+..|||-.|.+.
T Consensus 92 Fd~La~llls~fp~L--~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 92 FEKLSVMLISKFKLI--LEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHHHHHHHHhChHH--HhcCeEEEECCCCCCCc
Confidence 444443 23332222 34578999999999854
No 119
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.42 E-value=0.073 Score=56.95 Aligned_cols=72 Identities=22% Similarity=0.150 Sum_probs=43.8
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhcc-CCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMI-SPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~-kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
-++.+++|+|-.- .++.+++ +...-. .-|-.+++||++|.+....+ ++..+.......
T Consensus 60 ~~~~VvGDIHG~~------~dL~~ll-~~~g~~~~~~~ylFLGDyVDRG~~S~E--------------vl~ll~~lki~~ 118 (316)
T cd07417 60 EKITVCGDTHGQF------YDLLNIF-ELNGLPSETNPYLFNGDFVDRGSFSVE--------------VILTLFAFKLLY 118 (316)
T ss_pred ceeEEeecccCCH------HHHHHHH-HhcCCCCccCeEEEEeeEecCCCChHH--------------HHHHHHHhhhcc
Confidence 4788999999643 3566666 222211 22579999999999876432 222222211111
Q ss_pred CceEEEecCCCCCC
Q 006340 120 KSIFYDIRGNHDNF 133 (649)
Q Consensus 120 ~~p~~~I~GNHD~~ 133 (649)
...++.++||||..
T Consensus 119 p~~v~lLRGNHE~~ 132 (316)
T cd07417 119 PNHFHLNRGNHETD 132 (316)
T ss_pred CCceEEEeeccchH
Confidence 23688999999974
No 120
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.37 E-value=0.1 Score=55.86 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=41.5
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCC---------cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISP---------SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVI 113 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kP---------D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~ 113 (649)
+..++|+|-.- .+|.+++ +.+. ..+ .-+++.||++|.+....+ ++..+.
T Consensus 50 ~~viGDIHG~~------~~L~~ll-~~~g-~~~~~~~~~~~~~~~vfLGDyVDRGp~s~e--------------vl~ll~ 107 (311)
T cd07419 50 IKIFGDIHGQF------GDLMRLF-DEYG-SPVTEAAGDIEYIDYLFLGDYVDRGSNSLE--------------TICLLL 107 (311)
T ss_pred EEEEEeccCCH------HHHHHHH-HHcC-CCcccccCCCcCceEEEECCccCCCCChHH--------------HHHHHH
Confidence 67789999543 3566666 2221 111 247899999999875432 222222
Q ss_pred HhcCCCCceEEEecCCCCCC
Q 006340 114 KRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 114 ~~~~l~~~p~~~I~GNHD~~ 133 (649)
.........++.++||||..
T Consensus 108 ~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 108 ALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred HhhhcCCCcEEEeccccchH
Confidence 21112224789999999974
No 121
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.58 Score=53.18 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHH-HHHHhCC-ceE-EEeCcccCCC
Q 006340 199 LLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQ-DIFLKHS-LSA-YLCGHLHTRF 261 (649)
Q Consensus 199 qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~-~ll~~~~-v~l-~L~GHtH~~~ 261 (649)
|.+|-.+.++.- .-+.+|+++|.|.... . .++.+. ++...++ +.. |+-||.|...
T Consensus 213 ~~~~~~~m~~~~-----~idlii~lgH~~~~~~--~-e~~~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 213 QSEWEQDMVNTT-----DIDLIIALGHSPVRDD--D-EWKSLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred ccchHHHHhhcc-----CccEEEEecccccccc--h-hhhhHHHHHhhhCCCCceEEECchhhhhh
Confidence 566766666642 2358999999997631 1 122233 3333344 555 9999999775
No 122
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=93.34 E-value=0.24 Score=54.07 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=47.7
Q ss_pred cEEEEEEeCC-CCeEEEEEEeCC-cCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCCc
Q 006340 377 TIRALVFSVS-PILSVVAKVYDS-RSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRL 454 (649)
Q Consensus 377 ~IrvlvFs~s-~~~~V~v~id~~-~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~ 454 (649)
.|+=.+|++. +|.+|+|++||+ .|..+++.... ..-+=.+|...|.+. ..|.+ +|.|+|+|..|++
T Consensus 278 ~i~G~A~~G~~~I~rVEVS~DgG~tW~~A~l~~~~-------~~~aW~~W~~~~~~~--~~G~~---~l~~RA~D~~G~~ 345 (367)
T cd02114 278 ALRGIAFDGGSGIRRVDVSADGGDSWTQATLGPDL-------GRFSFRGWKLTLDGV--KKGPL---TLMVRATNNDGQT 345 (367)
T ss_pred EEEEEEEcCCCCEEEEEEEeCCCCcceEeEeCCCC-------CCcEEEEEEEEEECC--CCCcE---EEEEEEEcCCCCC
Confidence 5888889755 699999999988 49876442100 001114788888543 35665 7999999999998
Q ss_pred ee
Q 006340 455 SS 456 (649)
Q Consensus 455 ~~ 456 (649)
.-
T Consensus 346 QP 347 (367)
T cd02114 346 QP 347 (367)
T ss_pred CC
Confidence 74
No 123
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=93.20 E-value=0.13 Score=55.13 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=50.6
Q ss_pred cEEEEEEeCC-CCeEEEEEEeCC-cCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCCc
Q 006340 377 TIRALVFSVS-PILSVVAKVYDS-RSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRL 454 (649)
Q Consensus 377 ~IrvlvFs~s-~~~~V~v~id~~-~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~ 454 (649)
.|+=-+|++. .|++|+|++||+ .|..+++.... ++.-+=.+|...|.+. .|.| +|.|+|+|..|++
T Consensus 226 ~i~G~A~~g~~~I~rVEvS~DgG~tW~~A~l~~~~------~~~~~W~~W~~~~~~~---~G~~---~l~vRA~D~~g~~ 293 (317)
T cd02110 226 EIGGVAWSGGRGIRRVEVSLDGGRTWQEARLEGPL------AGPRAWRQWELDWDLP---PGEY---ELVARATDSTGNV 293 (317)
T ss_pred EEEEEEEcCCCCEEEEEEEeCCCCcceEeEccCCc------CCCCEEEEEEEEEEcC---CCcE---EEEEEEECCCCCc
Confidence 6888899764 799999999998 69876542111 0112225899998554 6777 7999999999998
Q ss_pred eee
Q 006340 455 SSS 457 (649)
Q Consensus 455 ~~~ 457 (649)
...
T Consensus 294 QP~ 296 (317)
T cd02110 294 QPE 296 (317)
T ss_pred CCC
Confidence 754
No 124
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.01 E-value=0.39 Score=45.80 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=30.3
Q ss_pred ccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCC
Q 006340 72 MISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHD 131 (649)
Q Consensus 72 ~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD 131 (649)
..+.|++|++||+......+ .+|..|.+=..+ . ..|.|.+-|||.
T Consensus 24 ~gpFd~~ic~Gdff~~~~~~--------~~~~~y~~g~~~------~-pipTyf~ggn~~ 68 (150)
T cd07380 24 KGPFDALLCVGDFFGDDEDD--------EELEAYKDGSKK------V-PIPTYFLGGNNP 68 (150)
T ss_pred cCCeeEEEEecCccCCccch--------hhHHHHhcCCcc------C-CCCEEEECCCCC
Confidence 34679999999998755432 245556432211 2 369999999996
No 125
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=92.78 E-value=0.19 Score=55.31 Aligned_cols=76 Identities=8% Similarity=-0.048 Sum_probs=51.2
Q ss_pred cEEEEEEeCC--CCeEEEEEEeCCc-CCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCC
Q 006340 377 TIRALVFSVS--PILSVVAKVYDSR-SGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGR 453 (649)
Q Consensus 377 ~IrvlvFs~s--~~~~V~v~id~~~-~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~ 453 (649)
.|+=.+||+. .|++|+|++||+. |.++++....+++.. ++.-+=.+|.+.|.+.. ..|.+ +|.|+|+|..|+
T Consensus 289 ~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~-~~~~aW~~W~~~~~~~~-~~G~~---~l~~RA~D~~G~ 363 (386)
T cd02112 289 TMKGYAYAGGGRRVTRVEVSLDDGKSWKLASIDYPEDPTKY-GKCWCWCFWSLDVPLSE-LLAAK---EICVRAWDESMN 363 (386)
T ss_pred EEEEEEEcCCCCcEEEEEEEcCCCCCceeCCCCCCCCcccc-CCCCEeEEEEEeeeccc-CCCcE---EEEEEEEcCCCC
Confidence 5888999765 6999999999985 988766322221100 00011268888884322 24777 799999999999
Q ss_pred ceee
Q 006340 454 LSSS 457 (649)
Q Consensus 454 ~~~~ 457 (649)
+.-.
T Consensus 364 ~QP~ 367 (386)
T cd02112 364 TQPR 367 (386)
T ss_pred cCCC
Confidence 8743
No 126
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=91.38 E-value=1.3 Score=49.29 Aligned_cols=186 Identities=10% Similarity=0.026 Sum_probs=98.6
Q ss_pred HHHhccCCcEEEEcCCCCCCCCcchh---------------------hhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEe
Q 006340 68 PALSMISPSLVLITGDLTDGKSKDLL---------------------TMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDI 126 (649)
Q Consensus 68 ~~l~~~kPD~VIitGDLtd~~~~~~~---------------------~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I 126 (649)
+.+.+.+|||+|++||.+........ .-..+...|..|+ .=..|.... ...||++.
T Consensus 162 ~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~-~D~nLqaah--A~~Pwi~~ 238 (522)
T COG3540 162 KTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYK-TDENLQAAH--AAFPWIVQ 238 (522)
T ss_pred HHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhc-ccHHHHHhh--ccCCEEEE
Confidence 44556789999999998754321100 0012223333333 111222211 23599999
Q ss_pred cCCCCCCCCCCCCCch-hh-h-------------cccccccccCCCCcc--ceEEEEeCCeeE-EEEEecCCCcc-----
Q 006340 127 RGNHDNFGVPIVGGSF-DF-F-------------SKHSINGQLGRKQNV--NSVTVQIGDEKH-LFVGFDSTMSV----- 183 (649)
Q Consensus 127 ~GNHD~~~v~~~~~~~-~~-~-------------~~ys~~~~l~~~~~~--~~~~~~~~~g~~-~fIglD~~~~p----- 183 (649)
=-.|+..|-++.+... +- + +-|-+.-.+...... ....-.+.+|++ .|..||.-.+.
T Consensus 239 WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~ 318 (522)
T COG3540 239 WDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPC 318 (522)
T ss_pred eccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhcccccc
Confidence 9999987655432222 11 1 111110000000000 012223344553 46667766555
Q ss_pred -CCCCCCC------CCCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCcc-------------------CCCCch
Q 006340 184 -GLRGPTN------LFGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFS-------------------ASSHSG 237 (649)
Q Consensus 184 -G~~~p~~------~~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~-------------------~~~~~~ 237 (649)
++..|.- --..+.++|.+||++.|.+. +..+.|+-.-.|+... .++..+
T Consensus 319 ~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S-----katWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~R 393 (522)
T COG3540 319 GDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS-----KATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGR 393 (522)
T ss_pred CCCCcchhhhhhCccccchhhHHHHHHHhhhhhc-----chhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccH
Confidence 4433311 11256789999999999864 3457777666665410 112245
Q ss_pred hHHHHHHHhCCc--eEEEeCcccCCC
Q 006340 238 RSLQDIFLKHSL--SAYLCGHLHTRF 261 (649)
Q Consensus 238 ~~l~~ll~~~~v--~l~L~GHtH~~~ 261 (649)
++|.+.++..++ .++|+|-.|..-
T Consensus 394 erLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 394 ERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred HHHHHHHHhcCCCCcEEEechhHHHH
Confidence 789999988774 599999999663
No 127
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=91.25 E-value=1.4 Score=45.05 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=54.6
Q ss_pred EEEEeCCeeEEEEEecCCCccCCCCCCCCCC--CCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCC-chhH
Q 006340 163 VTVQIGDEKHLFVGFDSTMSVGLRGPTNLFG--HPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSH-SGRS 239 (649)
Q Consensus 163 ~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G--~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~-~~~~ 239 (649)
...+.++.++.|+++-....++...+.+..| .+.....+.+++.++++++ +...+|++.|--......+. ...+
T Consensus 120 ~i~~~~g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~ 196 (239)
T smart00854 120 AIVEVKGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRE 196 (239)
T ss_pred EEEEECCEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHH
Confidence 4566788899999985443322211111222 1221123445555555542 34689999997654322221 1234
Q ss_pred HHHHHHhCCceEEEeCcccCCCC
Q 006340 240 LQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 240 l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
+..-+.+.++++++.||.|..++
T Consensus 197 ~A~~l~~~G~DvIiG~H~H~~~~ 219 (239)
T smart00854 197 LAHALIDAGADVVIGHHPHVLQP 219 (239)
T ss_pred HHHHHHHcCCCEEEcCCCCcCCc
Confidence 44444446899999999998874
No 128
>PLN00177 sulfite oxidase; Provisional
Probab=90.63 E-value=0.57 Score=51.67 Aligned_cols=74 Identities=12% Similarity=-0.025 Sum_probs=48.6
Q ss_pred cEEEEEEeC--CCCeEEEEEEeCC-cCCCchhhHHhh-hc---cccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEe
Q 006340 377 TIRALVFSV--SPILSVVAKVYDS-RSGKHDLVMEEL-MR---KRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTD 449 (649)
Q Consensus 377 ~IrvlvFs~--s~~~~V~v~id~~-~~~~~~~~~e~~-~~---~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D 449 (649)
.|+=.+||+ ..|.+|+|++||+ .|..+++..+.. +. ......-+=-+|+..|. ..|.+ .|.++|+|
T Consensus 285 ~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~----~~g~~---~l~~RA~D 357 (393)
T PLN00177 285 TVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVD----VPQST---EIVAKAVD 357 (393)
T ss_pred EEEEEEECCCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEec----CCCCe---EEEEEEEc
Confidence 699999974 3699999999988 598876532210 00 00001111257777773 23555 79999999
Q ss_pred CCCCceee
Q 006340 450 IMGRLSSS 457 (649)
Q Consensus 450 ~~G~~~~~ 457 (649)
..|++.-.
T Consensus 358 ~~G~~QP~ 365 (393)
T PLN00177 358 SAANVQPE 365 (393)
T ss_pred CCCCCCCC
Confidence 99998743
No 129
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=89.10 E-value=0.73 Score=50.37 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=48.9
Q ss_pred cEEEEEEeC--CCCeEEEEEEeCCc-CCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCC-CCCCceEEEEEEEeCCC
Q 006340 377 TIRALVFSV--SPILSVVAKVYDSR-SGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFED-SSPQRFWLEIEVTDIMG 452 (649)
Q Consensus 377 ~IrvlvFs~--s~~~~V~v~id~~~-~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~-g~h~~~~i~V~~~D~~G 452 (649)
.|+-.+||+ .+|.+|+|++||+. |..+++.....+.. .++.-+=..|.+.|.+ .. |.+ .|.|+|+|..|
T Consensus 265 ~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~-~~~~~aW~~W~~~~~~---~~~g~~---~l~~RA~D~~G 337 (365)
T cd02111 265 TVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWP-SGRKWAWTLWEATVPV---PAGKEA---EIIAKAVDSAY 337 (365)
T ss_pred EEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccc-cCCCCEeEEEEEEEEe---CCCCeE---EEEEEEEcCCC
Confidence 699999974 48999999999885 98875522111100 0001112578888733 33 344 89999999999
Q ss_pred Cceee
Q 006340 453 RLSSS 457 (649)
Q Consensus 453 ~~~~~ 457 (649)
++.-.
T Consensus 338 ~~QP~ 342 (365)
T cd02111 338 NVQPE 342 (365)
T ss_pred CcCCC
Confidence 98753
No 130
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=89.09 E-value=2.8 Score=42.17 Aligned_cols=60 Identities=23% Similarity=0.193 Sum_probs=34.5
Q ss_pred hccCCcEEEEcCCCCCCCCcchh-------------hhhhhhHHH-HHHHHH-----HHHHHHhcCCCCceEEEecCCCC
Q 006340 71 SMISPSLVLITGDLTDGKSKDLL-------------TMKQNEVEW-MEYQNV-----MQDVIKRSGLEKSIFYDIRGNHD 131 (649)
Q Consensus 71 ~~~kPD~VIitGDLtd~~~~~~~-------------~s~Q~e~eW-~~Y~~v-----l~~L~~~~~l~~~p~~~I~GNHD 131 (649)
.+.+||+++++||.+........ ......+++ +.|+.. ++++ ...+|++.+--+||
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~-----~~~~p~~~iwDDHD 100 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRL-----LAQVPTIGIWDDHD 100 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHH-----hhcCCEEEeccccc
Confidence 36799999999998865531100 001111222 233222 2332 23569999999999
Q ss_pred CCCC
Q 006340 132 NFGV 135 (649)
Q Consensus 132 ~~~v 135 (649)
..+-
T Consensus 101 i~~n 104 (228)
T cd07389 101 IGDN 104 (228)
T ss_pred cccc
Confidence 9653
No 131
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=89.08 E-value=0.61 Score=50.15 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=48.6
Q ss_pred cEEEEEEeCC-CCeEEEEEEeCC-cCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCCc
Q 006340 377 TIRALVFSVS-PILSVVAKVYDS-RSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRL 454 (649)
Q Consensus 377 ~IrvlvFs~s-~~~~V~v~id~~-~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~ 454 (649)
.|+=-+|++. .|.+|+|++||+ .|..+++.... ..-+=..|...|.+ ..|.| +|.++|+|..|++
T Consensus 228 ~i~G~A~sG~~~I~rVEVS~DgG~tW~~A~l~~~~-------~~~aW~~w~~~w~~---~~g~~---~i~~RA~D~~G~~ 294 (326)
T cd02113 228 EISGLAWSGRGRIRRVDVSFDGGRTWQDARLEGPV-------LPKALTRFRLPWKW---DGRPA---VLQSRATDETGYV 294 (326)
T ss_pred EEEEEEECCCCCEEEEEEEcCCCCCceECccCCCC-------CCCceEEEeEEEEc---CCCeE---EEEEEEEcCCCCC
Confidence 6888999766 599999999988 59876541111 11122578888854 34555 7999999999998
Q ss_pred eee
Q 006340 455 SSS 457 (649)
Q Consensus 455 ~~~ 457 (649)
...
T Consensus 295 QP~ 297 (326)
T cd02113 295 QPT 297 (326)
T ss_pred CCC
Confidence 753
No 132
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=88.57 E-value=3.8 Score=42.19 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=60.0
Q ss_pred eEEEEeCCeeEEEEEecCCCccCCCCC----CCC-------CCCCCHHHHHHHHHHHhcccccCCCCceEEEEEecCCCc
Q 006340 162 SVTVQIGDEKHLFVGFDSTMSVGLRGP----TNL-------FGHPADQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSF 230 (649)
Q Consensus 162 ~~~~~~~~g~~~fIglD~~~~pG~~~p----~~~-------~G~l~~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~ 230 (649)
+..++.++.++.|++............ ... ........++.+.++++++++ +...+|++.|.-...
T Consensus 121 p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~---~~D~vIv~~HwG~e~ 197 (250)
T PF09587_consen 121 PAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARK---KADVVIVSLHWGIEY 197 (250)
T ss_pred eEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhc---CCCEEEEEeccCCCC
Confidence 467778899999999865542211100 000 011223345777777777652 346899999964333
Q ss_pred cCCC-CchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 231 SASS-HSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 231 ~~~~-~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
...+ +...++..-+.+.++++++.+|.|..++
T Consensus 198 ~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~ 230 (250)
T PF09587_consen 198 ENYPTPEQRELARALIDAGADIIIGHHPHVIQP 230 (250)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccc
Confidence 2222 2234555556667899999999999985
No 133
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=88.35 E-value=0.97 Score=35.29 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=31.0
Q ss_pred CeeeeccCCCCCCCCCCCceEEEEEEEeCCCCceeeeeeeEEEcCcc
Q 006340 422 DLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRLSSSELRPFSINGLS 468 (649)
Q Consensus 422 ~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~~~~~~~~fs~~~~~ 468 (649)
--|.... |.. .+|.| .|+|+|+|..|.+.......|.|+-..
T Consensus 12 G~Ws~t~-~~~-~dG~y---~itv~a~D~AGN~s~~~~~~~tiDtta 53 (54)
T PF13754_consen 12 GNWSFTV-PAL-ADGTY---TITVTATDAAGNTSTSSSVTFTIDTTA 53 (54)
T ss_pred CcEEEeC-CCC-CCccE---EEEEEEEeCCCCCCCccceeEEEeCCC
Confidence 4566654 434 89998 799999999999987743458887543
No 134
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=86.97 E-value=0.86 Score=47.36 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEEecCCCc-cC---------------------CCCchhHHHHHHHhCCceEEEeCc
Q 006340 199 LLTEIDSELSQWNSQSTKPVTKITFGHFPVSF-SA---------------------SSHSGRSLQDIFLKHSLSAYLCGH 256 (649)
Q Consensus 199 qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~-~~---------------------~~~~~~~l~~ll~~~~v~l~L~GH 256 (649)
-+-|++.+|.... ...+++++|.||-... +. ....+..|...++.|++...+.||
T Consensus 254 slpwlk~dl~~~a---adgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGh 330 (392)
T COG5555 254 SLPWLKVDLIYSA---ADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGH 330 (392)
T ss_pred cCcceeccceeec---cCCCceeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEecccc
Confidence 4568888887654 2457999999984321 10 011235788888899999999999
Q ss_pred ccCCC
Q 006340 257 LHTRF 261 (649)
Q Consensus 257 tH~~~ 261 (649)
-|...
T Consensus 331 khd~~ 335 (392)
T COG5555 331 KHDFN 335 (392)
T ss_pred ccccc
Confidence 99773
No 135
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=84.53 E-value=24 Score=36.41 Aligned_cols=177 Identities=16% Similarity=0.113 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
||+++|+|+=-.+ .| ..++..+.....+.++||||+-|--+-++..-. |+.|+++++. +.
T Consensus 1 mriLfiGDvvGk~---Gr-~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git---------~k~y~~l~~~-----G~-- 60 (266)
T COG1692 1 MRILFIGDVVGKP---GR-KAVKEHLPQLKSKYKIDFVIVNGENAAGGFGIT---------EKIYKELLEA-----GA-- 60 (266)
T ss_pred CeEEEEecccCcc---hH-HHHHHHhHHHHHhhcCcEEEEcCccccCCcCCC---------HHHHHHHHHh-----CC--
Confidence 6899999986443 22 234455533334679999999999887765321 5567766543 22
Q ss_pred ceEEEecCCCCCCCCCCCCCchhhhccccc-ccccC-CCCcc--ceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCC
Q 006340 121 SIFYDIRGNHDNFGVPIVGGSFDFFSKHSI-NGQLG-RKQNV--NSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPA 196 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~~~~~~~~~~~~ys~-~~~l~-~~~~~--~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~ 196 (649)
- +...|||=...- ...++..++.. .+.+. .++.. ++..+..++.++.++-+-..... | ..+
T Consensus 61 -d-viT~GNH~wd~~----ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m----~----~~~- 125 (266)
T COG1692 61 -D-VITLGNHTWDQK----EILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFM----P----PAL- 125 (266)
T ss_pred -C-EEecccccccch----HHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccC----c----ccc-
Confidence 2 458999965421 11111111100 00000 00111 14456677777777655321110 0 011
Q ss_pred HHHHHHHHHHHhcccccCCCCceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 197 DQLLTEIDSELSQWNSQSTKPVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 197 ~~qL~wL~~~L~~~~~~~~~~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
++-.+.+++.+.+.+. +.+.+|+=.|--... +. ..+- ..-+..+.+++-=|||-+.
T Consensus 126 d~PF~~~d~l~~~~~~---~~~~iiVDFHAEtTS----EK-~a~g-~yldGrvsavvGTHTHV~T 181 (266)
T COG1692 126 DNPFKAADKLLDEIKL---GTDLIIVDFHAETTS----EK-NAFG-WYLDGRVSAVVGTHTHVPT 181 (266)
T ss_pred CCHHHHHHHHHHhCcc---CCceEEEEccccchh----hh-hhhh-eEEcCeEEEEEeccCcccc
Confidence 2234456666665542 223666667742211 10 0111 1112258999999999775
No 136
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=83.47 E-value=7.3 Score=42.00 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.2
Q ss_pred hHHHHHHHhCCceEEEeCcccCCC
Q 006340 238 RSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 238 ~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
+.+.++|++-+-...++.|+|..+
T Consensus 208 p~~~eLL~~LkP~yWfsAHLH~KF 231 (456)
T KOG2863|consen 208 PALEELLEDLKPQYWFSAHLHVKF 231 (456)
T ss_pred hHHHHHHHHhCcchhhhhhHhhHH
Confidence 568889988889999999999886
No 137
>PLN02252 nitrate reductase [NADPH]
Probab=81.98 E-value=2.1 Score=52.16 Aligned_cols=74 Identities=11% Similarity=-0.058 Sum_probs=48.4
Q ss_pred cEEEEEEeC--CCCeEEEEEEeCCc-CCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCC
Q 006340 377 TIRALVFSV--SPILSVVAKVYDSR-SGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGR 453 (649)
Q Consensus 377 ~IrvlvFs~--s~~~~V~v~id~~~-~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~ 453 (649)
.|+=-+||+ ..|++|+|++||+. |..+++.....+.+. ++.-.=-+|.+.|.... ..|.+ .|.|+|+|..|+
T Consensus 361 ~i~G~A~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~-g~~~~W~~W~~~~~~~~-~~g~~---~i~vRA~D~~g~ 435 (888)
T PLN02252 361 TMKGYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKY-GKYWCWCFWSLDVEVLD-LLGAK---EIAVRAWDESMN 435 (888)
T ss_pred EEEEEEECCCCCceEEEEEEcCCCCcceeCccCCCCCcccc-CCccEEEEEEEeEeccc-CCCce---EEEEEEEcCCCC
Confidence 688899974 47999999999884 988766332222110 11011246777773222 24666 799999999998
Q ss_pred ce
Q 006340 454 LS 455 (649)
Q Consensus 454 ~~ 455 (649)
+.
T Consensus 436 ~Q 437 (888)
T PLN02252 436 TQ 437 (888)
T ss_pred cC
Confidence 75
No 138
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=79.60 E-value=2.8 Score=45.20 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=47.1
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCc-EEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPS-LVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD-~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
-+..++|+|-.. .++.+++ +......|+ --+++||.+|.+....+... .+-.++. .-.
T Consensus 60 PV~i~GDiHGq~------~DLlrlf-~~~g~~pp~~~ylFLGDYVDRG~~slE~i~-----------LL~a~Ki---~yp 118 (331)
T KOG0374|consen 60 PVKIVGDIHGQF------GDLLRLF-DLLGSFPPDQNYVFLGDYVDRGKQSLETIC-----------LLFALKI---KYP 118 (331)
T ss_pred CEEEEccCcCCH------HHHHHHH-HhcCCCCCcccEEEecccccCCccceEEee-----------hhhhhhh---hCC
Confidence 477899999643 2667776 333213454 57899999999986543221 1222221 123
Q ss_pred ceEEEecCCCCCCCCC
Q 006340 121 SIFYDIRGNHDNFGVP 136 (649)
Q Consensus 121 ~p~~~I~GNHD~~~v~ 136 (649)
..++.++|||+..++.
T Consensus 119 ~~~~lLRGNHE~~~in 134 (331)
T KOG0374|consen 119 ENVFLLRGNHECASIN 134 (331)
T ss_pred ceEEEecccccccccc
Confidence 5899999999998754
No 139
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=76.78 E-value=6.3 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCceEEEEEEEeCCCCceeeeeeeEEEcCcc
Q 006340 429 NYRAFEDSSPQRFWLEIEVTDIMGRLSSSELRPFSINGLS 468 (649)
Q Consensus 429 ~~~~~~~g~h~~~~i~V~~~D~~G~~~~~~~~~fs~~~~~ 468 (649)
.|..-.+|.+ +++|+|+|..|+......+.|.++...
T Consensus 16 ~P~~~~dg~y---t~~v~a~D~AGN~~~~~~~~~i~d~~~ 52 (60)
T PF12245_consen 16 IPENDADGEY---TLTVTATDKAGNTSSSTTQIVIVDNTA 52 (60)
T ss_pred ccCccCCccE---EEEEEEEECCCCEEEeeeEEEEEcCCC
Confidence 3777778877 799999999999998765666665543
No 140
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=74.86 E-value=4.9 Score=38.69 Aligned_cols=47 Identities=28% Similarity=0.423 Sum_probs=37.2
Q ss_pred eeeccCCCCCCCCCCCceEEEE-EEEeCCCCceeeeee-eEEEcCccccccc
Q 006340 424 YAAPWNYRAFEDSSPQRFWLEI-EVTDIMGRLSSSELR-PFSINGLSAKISW 473 (649)
Q Consensus 424 ~~~~w~~~~~~~g~h~~~~i~V-~~~D~~G~~~~~~~~-~fs~~~~~~~~~~ 473 (649)
|...|+-+.+.+|.+ +|++ +|.|.+|........ .|.+|...+.++.
T Consensus 3 ~~~~fd~~~l~dG~Y---~l~~~~a~D~agN~~~~~~~~~~~iD~T~Ptisi 51 (158)
T PF13750_consen 3 YTYTFDLSTLPDGSY---TLTVVTATDAAGNTSTSTVSETFTIDNTPPTISI 51 (158)
T ss_pred EEEEEEeCcCCCccE---EEEEEEEEecCCCEEEEEEeeEEEEcCCCCEEEE
Confidence 677888899999999 7999 899999998766432 4888877765543
No 141
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=74.62 E-value=63 Score=31.05 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=49.4
Q ss_pred cEEEEEEeCCCC-eEEEEEEeCCcCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCC-CCCCceEEEEEEEeCCCCc
Q 006340 377 TIRALVFSVSPI-LSVVAKVYDSRSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFED-SSPQRFWLEIEVTDIMGRL 454 (649)
Q Consensus 377 ~IrvlvFs~s~~-~~V~v~id~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~-g~h~~~~i~V~~~D~~G~~ 454 (649)
.|++.+...... +-..+.+.|+.-.+. .++ .-...+...|.+.. |+-+.. -....|+|+|.|+|..|..
T Consensus 68 ~i~i~~tD~~~~~~i~sv~l~Gg~~~d~-------v~l-s~~~~~~~~~~~~y-p~~fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 68 NISINVTDNSDDSKITSVSLTGGPASDS-------VSL-SWTNKGNGVYTLEY-PRIFPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred eeEEEEEeCCCCceEEEEEEECCcccce-------EEE-eeEeccCceEEeec-ccccCCcCCCCeEEEEEEEEecCCCE
Confidence 688888855433 444566677663321 111 11234456777764 544421 1223458999999999999
Q ss_pred eeeeeeeEEEcCc
Q 006340 455 SSSELRPFSINGL 467 (649)
Q Consensus 455 ~~~~~~~fs~~~~ 467 (649)
.+. ...|+.-..
T Consensus 139 ~~~-si~F~y~P~ 150 (158)
T PF13750_consen 139 STK-SISFSYMPP 150 (158)
T ss_pred EEE-EEEEEEeCC
Confidence 987 488998643
No 142
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=74.34 E-value=7 Score=43.15 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
-.||.+||+|+.. .+-.+.+++++ +..+...|-.+|+.|-.+-...... .+.|..+.+......+..... ..++
T Consensus 283 ~~fVfLSdV~LD~--~~vm~aL~kif-qgy~~~pP~~iIlcG~FtS~p~~~~-s~~~~k~~f~~LA~~l~~~~~--~~ek 356 (525)
T KOG3818|consen 283 TSFVFLSDVFLDD--KKVMEALRKIF-QGYKDAPPTAIILCGSFTSSPRQTS-SSDQLKDGFRWLAAQLTCFRK--DYEK 356 (525)
T ss_pred ceEEEEehhcccc--HHHHHHHHHHH-hhccCCCCeEEEEeccccccccccc-hHHHHHHHHHHHHhhcccccc--cccc
Confidence 5789999999986 33334555655 3344556889999999987654322 455555554444433322221 1367
Q ss_pred ceEEEecCCCCCCC
Q 006340 121 SIFYDIRGNHDNFG 134 (649)
Q Consensus 121 ~p~~~I~GNHD~~~ 134 (649)
+.++.|||--|.+.
T Consensus 357 T~fIFVPGP~Dp~~ 370 (525)
T KOG3818|consen 357 TQFIFVPGPNDPWV 370 (525)
T ss_pred ceEEEecCCCCCCc
Confidence 89999999999974
No 143
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=73.77 E-value=1.2e+02 Score=31.66 Aligned_cols=160 Identities=15% Similarity=0.069 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCCCCCCCCC
Q 006340 61 DFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNFGVPIVGG 140 (649)
Q Consensus 61 ~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~~v~~~~~ 140 (649)
.+++.+.+..++.++||||+-|.-+.++..-. .+.|+++++. ++ - ....|||=... ..
T Consensus 14 ~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git---------~~~~~~L~~~-----Gv---D-viT~GNH~wdk----ke 71 (253)
T PF13277_consen 14 AVKEHLPELKEEYGIDFVIANGENAAGGFGIT---------PKIAEELFKA-----GV---D-VITMGNHIWDK----KE 71 (253)
T ss_dssp HHHHHHHHHGG--G-SEEEEE-TTTTTTSS-----------HHHHHHHHHH-----T----S-EEE--TTTTSS----TT
T ss_pred HHHHHHHHHHhhcCCCEEEECCcccCCCCCCC---------HHHHHHHHhc-----CC---C-EEecCcccccC----cH
Confidence 46666644445679999999999887665311 1234444432 22 2 34899996542 12
Q ss_pred chhhhcccc-cccccCC-CCcc--ceEEEEeCCeeEEEEEecCCCccCCCCCCCCCCCCCHHHHHHHHHHHhcccccCCC
Q 006340 141 SFDFFSKHS-INGQLGR-KQNV--NSVTVQIGDEKHLFVGFDSTMSVGLRGPTNLFGHPADQLLTEIDSELSQWNSQSTK 216 (649)
Q Consensus 141 ~~~~~~~ys-~~~~l~~-~~~~--~~~~~~~~~g~~~fIglD~~~~pG~~~p~~~~G~l~~~qL~wL~~~L~~~~~~~~~ 216 (649)
..++..+.. ..+.... .+.. +...++.++.++.++-+-.... ...++ .-...+++.|++.+. +
T Consensus 72 i~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~f---------m~~~~-~PF~~~d~~l~~l~~---~ 138 (253)
T PF13277_consen 72 IFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVF---------MPPID-CPFRAADRLLEELKE---E 138 (253)
T ss_dssp HHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TT---------S---S--HHHHHHHHHHH-------
T ss_pred HHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECccccc---------CCCCC-ChHHHHHHHHHhccc---c
Confidence 223333211 0000000 0111 1466777888888876633221 11122 444556666665432 2
Q ss_pred CceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 217 PVTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 217 ~~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
...+++=.|-=. .+ .+.-.-..-.-++++++--|||-+.
T Consensus 139 ~~~iiVDFHAEa----TS--EK~A~g~~lDGrvsaV~GTHTHVqT 177 (253)
T PF13277_consen 139 TDIIIVDFHAEA----TS--EKQAMGWYLDGRVSAVVGTHTHVQT 177 (253)
T ss_dssp -SEEEEEEE-S-----HH--HHHHHHHHHBTTBSEEEEESSSS-B
T ss_pred CCEEEEEeecCc----HH--HHHHHHHHhCCcEEEEEeCCCCccC
Confidence 346666667221 11 1222223334469999999999886
No 144
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=62.85 E-value=19 Score=37.69 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 006340 39 HVIWAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGL 118 (649)
Q Consensus 39 ~~~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l 118 (649)
+-.++|-|||.|--.+. + .+...=|+.+.+||.|..+.... . ..+++ .+.+ +
T Consensus 60 ~~~r~VcisdtH~~~~~----------i---~~~p~gDvlihagdfT~~g~~~e-v--------~~fn~---~~gs---l 111 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD----------I---NDIPDGDVLIHAGDFTNLGLPEE-V--------IKFNE---WLGS---L 111 (305)
T ss_pred CceEEEEecCcccccCc----------c---ccCCCCceEEeccCCccccCHHH-H--------HhhhH---Hhcc---C
Confidence 35999999999954431 1 12345689999999999776421 1 11222 2222 4
Q ss_pred CCceEEEecCCCCCC
Q 006340 119 EKSIFYDIRGNHDNF 133 (649)
Q Consensus 119 ~~~p~~~I~GNHD~~ 133 (649)
+-.--++|.|||+..
T Consensus 112 ph~yKIVIaGNHELt 126 (305)
T KOG3947|consen 112 PHEYKIVIAGNHELT 126 (305)
T ss_pred cceeeEEEeecccee
Confidence 444567899999973
No 145
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=62.78 E-value=49 Score=30.89 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=47.3
Q ss_pred cEEEEEEeCCCCeEEEEEE--------eCCcCCCch--hhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEE
Q 006340 377 TIRALVFSVSPILSVVAKV--------YDSRSGKHD--LVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIE 446 (649)
Q Consensus 377 ~IrvlvFs~s~~~~V~v~i--------d~~~~~~~~--~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~ 446 (649)
|+++.+=..+.+.+++|.| .+..-+.++ +..+.+-....+...-..=..... |.+...|.- -+.++
T Consensus 39 hfe~~i~d~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~I-Pa~a~~G~Y---H~~i~ 114 (132)
T PF15418_consen 39 HFEADISDNSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDI-PADAPAGDY---HFMIT 114 (132)
T ss_pred EEEEEEEcccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccCCcccEeEEEeeeC-CCCCCCcce---EEEEE
Confidence 7888888999999999999 222111110 001100000001111112233343 777777754 49999
Q ss_pred EEeCCCCceeeeeeeEEE
Q 006340 447 VTDIMGRLSSSELRPFSI 464 (649)
Q Consensus 447 ~~D~~G~~~~~~~~~fs~ 464 (649)
|+|..|++...+ +.+.|
T Consensus 115 VtD~~Gn~~~~~-~~i~I 131 (132)
T PF15418_consen 115 VTDAAGNQTEEE-RSIKI 131 (132)
T ss_pred EEECCCCEEEEE-EEEEE
Confidence 999999998764 55554
No 146
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=61.05 E-value=9.8 Score=36.57 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCCC
Q 006340 218 VTKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 218 ~~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
...++++|+|...... ..+.+++++||||....
T Consensus 107 ~~~i~l~H~~~~~~~~------------~~~~d~vi~GHtH~~~~ 139 (168)
T cd07390 107 GRRVYLSHYPILEWNG------------LDRGSWNLHGHIHSNSP 139 (168)
T ss_pred CEEEEEEeCCcccCCC------------CCCCeEEEEeeeCCCCC
Confidence 3689999988653110 23568999999998874
No 147
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=58.66 E-value=71 Score=28.70 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCeEEEEEEeCCcCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCCceee
Q 006340 378 IRALVFSVSPILSVVAKVYDSRSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRLSSS 457 (649)
Q Consensus 378 IrvlvFs~s~~~~V~v~id~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~~~~ 457 (649)
|.=|+||+..-++..+.+||...-. -+- .+++ + ++ .+.-....||.++|++-|.+|-+...
T Consensus 38 V~wnvWsG~~Gd~a~vl~dg~~V~~------G~~---~~~~--~---~a-----t~~v~kgG~y~m~V~lCn~dGCS~S~ 98 (106)
T cd02848 38 VKWNAWSGDPGDTYKVLLDGKEVWS------GAL---TGSS--G---TA-----TFKVGKGGRYQMQVALCNGDGCSTSA 98 (106)
T ss_pred EEEeeecCCCCcEEEEEECCeEEEc------ccC---CCCc--c---EE-----EEEeCCCCeEEEEEEEECCCCccCcC
Confidence 3349999999999999999844211 000 0000 0 01 12223335678999999999977643
No 148
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=55.73 E-value=22 Score=36.67 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=41.2
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCC-cEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISP-SLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kP-D~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
+...+|+|-.- .++.++. + +...-| .--++.||.+|.+-.+.+. + -++-.++-+ -..
T Consensus 45 vtvcGDIHGQf------~Dllelf-~-igG~~~~t~YLFLGDyVDRG~~SvEt----------~-lLLl~lK~r---YP~ 102 (303)
T KOG0372|consen 45 VTVCGDIHGQF------YDLLELF-R-IGGDVPETNYLFLGDYVDRGYYSVET----------F-LLLLALKVR---YPD 102 (303)
T ss_pred cEEeecccchH------HHHHHHH-H-hCCCCCCCceEeecchhccccchHHH----------H-HHHHHHhhc---Ccc
Confidence 45789999532 2344444 2 222223 3478899999998754321 1 122233222 224
Q ss_pred eEEEecCCCCCCCC
Q 006340 122 IFYDIRGNHDNFGV 135 (649)
Q Consensus 122 p~~~I~GNHD~~~v 135 (649)
.+-.++|||+...+
T Consensus 103 ritLiRGNHEsRqi 116 (303)
T KOG0372|consen 103 RITLIRGNHESRQI 116 (303)
T ss_pred eeEEeeccchhhhh
Confidence 78999999999754
No 149
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=53.26 E-value=50 Score=27.00 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCeEEEEEEeCCcCCCchhhHHhhhccccCCCCCCCeeeeccCCCCCCCCCCCceEEEEEEEeCCCCce
Q 006340 378 IRALVFSVSPILSVVAKVYDSRSGKHDLVMEELMRKRTDNSSRGDLYAAPWNYRAFEDSSPQRFWLEIEVTDIMGRLS 455 (649)
Q Consensus 378 IrvlvFs~s~~~~V~v~id~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~w~~~~~~~g~h~~~~i~V~~~D~~G~~~ 455 (649)
..|.+-+..+...+.+.+||.+|.. ++++|..|. ... +.+ +|+..|.|..|+..
T Consensus 10 ~~v~l~~~~~~~~IyYT~DGs~Pt~-----------------~S~~Y~~Pi---~i~-~~t---tVka~a~~~~g~~s 63 (67)
T PF13290_consen 10 TTVTLSTADPDATIYYTTDGSEPTP-----------------SSPLYTGPI---TIT-GTT---TVKARAFDPDGNSS 63 (67)
T ss_pred eEEEEEeCCCCCEEEEEcCCCcccc-----------------CCCeeccCE---Eec-CCE---EEEEEEEcCCCccc
Confidence 3444445667779999999988742 246887654 333 555 79999999998864
No 150
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=43.56 E-value=40 Score=34.13 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=41.9
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcE-EEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSL-VLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~-VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
+-..+|||-.- -++.++. ++- ..-||- -|+.||.+|.+-.+.+. +. .+--|+... ..
T Consensus 48 VTvCGDIHGQF------yDL~eLF-rtg-G~vP~tnYiFmGDfVDRGyySLEt----------fT-~l~~Lkary---P~ 105 (306)
T KOG0373|consen 48 VTVCGDIHGQF------YDLLELF-RTG-GQVPDTNYIFMGDFVDRGYYSLET----------FT-LLLLLKARY---PA 105 (306)
T ss_pred eeEeeccchhH------HHHHHHH-Hhc-CCCCCcceEEeccccccccccHHH----------HH-HHHHHhhcC---Cc
Confidence 34789999532 2445554 222 233553 67899999998765432 22 233333322 23
Q ss_pred eEEEecCCCCCCCC
Q 006340 122 IFYDIRGNHDNFGV 135 (649)
Q Consensus 122 p~~~I~GNHD~~~v 135 (649)
.+-.++|||+...+
T Consensus 106 ~ITLlRGNHEsRqi 119 (306)
T KOG0373|consen 106 KITLLRGNHESRQI 119 (306)
T ss_pred eeEEeeccchhhhh
Confidence 68889999998753
No 151
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=41.99 E-value=53 Score=34.16 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=41.9
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcE-EEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSL-VLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~-VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
-..+.+|+|-.- .+|-+++ .+....||. -++.||.+|.+..+.+ ++.-+.+...--.
T Consensus 61 pvtvcGDvHGqf------~dl~ELf--kiGG~~pdtnylfmGDyvdrGy~Sve--------------tVS~lva~Kvry~ 118 (319)
T KOG0371|consen 61 PVTVCGDVHGQF------HDLIELF--KIGGLAPDTNYLFMGDYVDRGYYSVE--------------TVSLLVALKVRYP 118 (319)
T ss_pred ceEEecCcchhH------HHHHHHH--HccCCCCCcceeeeeeecccccchHH--------------HHHHHHHhhcccc
Confidence 357889999432 2344443 233456775 7789999998875421 2222222110012
Q ss_pred ceEEEecCCCCCCC
Q 006340 121 SIFYDIRGNHDNFG 134 (649)
Q Consensus 121 ~p~~~I~GNHD~~~ 134 (649)
..+-.++|||+..-
T Consensus 119 ~rvtilrGNHEsrq 132 (319)
T KOG0371|consen 119 DRVTILRGNHESRQ 132 (319)
T ss_pred ceeEEecCchHHHH
Confidence 36888999999864
No 152
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.33 E-value=27 Score=33.24 Aligned_cols=65 Identities=25% Similarity=0.370 Sum_probs=40.4
Q ss_pred EEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 006340 42 WAVQLSDLHFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKS 121 (649)
Q Consensus 42 ~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~ 121 (649)
-++.++|+|+-..-++-...|++++ --.+..-|++||.++-... | +.++.+.+
T Consensus 2 LvL~lgD~HiP~Ra~~Lp~KFkklL----vPgki~hilctGNlcs~e~---------------~-dylk~l~~------- 54 (183)
T KOG3325|consen 2 LVLVLGDLHIPHRANDLPAKFKKLL----VPGKIQHILCTGNLCSKES---------------Y-DYLKTLSS------- 54 (183)
T ss_pred EEEEeccccCCccccccCHHHHhcc----CCCceeEEEEeCCcchHHH---------------H-HHHHhhCC-------
Confidence 4688999999543322223455554 2346789999998764222 1 24555432
Q ss_pred eEEEecCCCCCC
Q 006340 122 IFYDIRGNHDNF 133 (649)
Q Consensus 122 p~~~I~GNHD~~ 133 (649)
-+..++|.-|..
T Consensus 55 dvhiVrGeFD~~ 66 (183)
T KOG3325|consen 55 DVHIVRGEFDEN 66 (183)
T ss_pred CcEEEecccCcc
Confidence 577899988874
No 153
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.70 E-value=14 Score=38.65 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=0.0
Q ss_pred CchhhHHHHHHH--HHhhccceeeEEeeC
Q 006340 544 HVVWYGILGYLF--YLVLFPWFVGQVFTD 570 (649)
Q Consensus 544 ~~~~~~~~~~~~--y~~~~pw~~g~~~~~ 570 (649)
-.+|.++++++| -|+++=||-=+++.+
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Ym~lLr~ 131 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFYMWLLRE 131 (381)
T ss_dssp -----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667665544 466778887665554
No 154
>PF08632 Zds_C: Activator of mitotic machinery Cdc14 phosphatase activation C-term; InterPro: IPR013941 This region of the Zds1 protein is critical for sporulation and has also been shown to suppress the calcium sensitivity of Zds1 deletions []. The C-terminal motif is common to both Zds1 and Zds2 proteins, both of which are putative interactors of Cdc55 and are required for the completion of mitotic exit and cytokinesis. They both contribute to timely Cdc14 activation during mitotic exit and are required downstream of separase to facilitate nucleolar Cdc14 release[].
Probab=32.29 E-value=23 Score=27.23 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.2
Q ss_pred HHhhhhhhhhhcc
Q 006340 623 LAAEKELYRVSLS 635 (649)
Q Consensus 623 ~~~~~~~~~~~~~ 635 (649)
+-.|||+||+|+-
T Consensus 14 i~vERaIYrlsH~ 26 (53)
T PF08632_consen 14 IHVERAIYRLSHL 26 (53)
T ss_pred hHHHHHHHHHHHH
Confidence 5679999996653
No 155
>PRK09453 phosphodiesterase; Provisional
Probab=31.80 E-value=64 Score=31.17 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=20.7
Q ss_pred eEEEEEecCCCccCCCCchhHHHHHHHhCCceEEEeCcccCCC
Q 006340 219 TKITFGHFPVSFSASSHSGRSLQDIFLKHSLSAYLCGHLHTRF 261 (649)
Q Consensus 219 ~~Ilf~H~P~~~~~~~~~~~~l~~ll~~~~v~l~L~GHtH~~~ 261 (649)
..|++.|..... . ..+ .+..+.++++|||+|...
T Consensus 98 ~~i~l~HG~~~~---~---~~~---~~~~~~d~vi~GHtH~p~ 131 (182)
T PRK09453 98 KRLFLTHGHLYG---P---ENL---PALHDGDVLVYGHTHIPV 131 (182)
T ss_pred eEEEEECCCCCC---h---hhc---ccccCCCEEEECCCCCCc
Confidence 458888854321 1 011 122357899999999764
No 156
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=31.46 E-value=49 Score=38.53 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCC
Q 006340 59 ASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDN 132 (649)
Q Consensus 59 ~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~ 132 (649)
+++|-..+...+++.-.|-+=+.||+.|.+.... .+++.|..- --+=.-=||||.
T Consensus 169 a~~fI~al~~lIqrL~VDhLHIvGDIyDRGp~pd--------------~ImD~Lm~~-----hsvDIQWGNHDI 223 (640)
T PF06874_consen 169 ADEFIIALSELIQRLAVDHLHIVGDIYDRGPRPD--------------KIMDRLMNY-----HSVDIQWGNHDI 223 (640)
T ss_pred HHHHHHHHHHHHHHHhhhheeecccccCCCCChh--------------HHHHHHhcC-----CCccccccchHH
Confidence 4445444446667778899999999999998532 467766431 123335699997
No 157
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.24 E-value=1.2e+02 Score=34.15 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCCCCCCCcHHHHHHHHHHHHhccC-CcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q 006340 41 IWAVQLSDLHFSVHHPDRASDFKRIVGPALSMIS-PSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLE 119 (649)
Q Consensus 41 ~~fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~k-PD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~ 119 (649)
.+|+.++|.- .+...+-+-|...-++.. .|++++.|++++..+.+ .||..|++-..+ +
T Consensus 6 ~kILv~Gd~~------Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~--------~e~~~ykng~~~------v- 64 (528)
T KOG2476|consen 6 AKILVCGDVE------GRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQN--------AEVEKYKNGTKK------V- 64 (528)
T ss_pred ceEEEEcCcc------ccHHHHHHHHHHHhhcCCCceEEEEecccCCCccch--------hHHHHHhcCCcc------C-
Confidence 5888988864 222233333323223334 69999999999874432 367777654433 3
Q ss_pred CceEEEecCCCC
Q 006340 120 KSIFYDIRGNHD 131 (649)
Q Consensus 120 ~~p~~~I~GNHD 131 (649)
.+|+|..-+|--
T Consensus 65 PiptY~~g~~~~ 76 (528)
T KOG2476|consen 65 PIPTYFLGDNAN 76 (528)
T ss_pred ceeEEEecCCCC
Confidence 268888777763
No 158
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=29.53 E-value=39 Score=33.79 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.2
Q ss_pred HHHHHHHhCCceEEEeCcccCCCC
Q 006340 239 SLQDIFLKHSLSAYLCGHLHTRFG 262 (649)
Q Consensus 239 ~l~~ll~~~~v~l~L~GHtH~~~g 262 (649)
.+.++++..+.+++++||||...+
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 467788888899999999997754
No 159
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=29.44 E-value=71 Score=32.72 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCC
Q 006340 97 QNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 97 Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
.+.+.|..|..+.+++......+..||++|+||+-.+
T Consensus 172 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~ 208 (230)
T TIGR03707 172 ASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKR 208 (230)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence 3445688888888877665444567999999999764
No 160
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=28.21 E-value=81 Score=34.25 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCCCCcHHHHHHHHHHHHhccCCc--EEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 006340 43 AVQLSDLHFSVHHPDRASDFKRIVGPALSMISPS--LVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEK 120 (649)
Q Consensus 43 fv~ISDlHls~~~~~~~~~l~~~i~~~l~~~kPD--~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~ 120 (649)
+-+.+|||-.-+ +|-++. + + .-.|. --+++||.+|.+.-+.+ =-.|--.++- ...
T Consensus 90 iTVCGDIHGQf~------DLmKLF-E-V-GG~PA~t~YLFLGDYVDRGyFSiE--------CvlYLwsLKi------~yp 146 (517)
T KOG0375|consen 90 ITVCGDIHGQFF------DLMKLF-E-V-GGSPANTRYLFLGDYVDRGYFSIE--------CVLYLWSLKI------NYP 146 (517)
T ss_pred eeEecccchHHH------HHHHHH-H-c-cCCcccceeEeeccccccceeeee--------hHHHHHHHhc------CCC
Confidence 567899996432 455555 2 3 33443 46889999999864321 1123333332 122
Q ss_pred ceEEEecCCCCCCC
Q 006340 121 SIFYDIRGNHDNFG 134 (649)
Q Consensus 121 ~p~~~I~GNHD~~~ 134 (649)
...+.++|||+...
T Consensus 147 ~tl~lLRGNHECrH 160 (517)
T KOG0375|consen 147 KTLFLLRGNHECRH 160 (517)
T ss_pred CeEEEecCCcchhh
Confidence 46788999999864
No 161
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.96 E-value=3.3e+02 Score=25.44 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEcC---CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEe
Q 006340 60 SDFKRIVGPALSMISPSLVLITG---DLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDI 126 (649)
Q Consensus 60 ~~l~~~i~~~l~~~kPD~VIitG---DLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I 126 (649)
.++.+.+.+.+...+||.|++.. |+......+ +. -+.|+++++++.+. .++.+++.+
T Consensus 36 ~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~-----~~---~~~~~~lv~~i~~~--~~~~~iil~ 95 (171)
T cd04502 36 ADCLHYFDRLVLPYQPRRVVLYAGDNDLASGRTPE-----EV---LRDFRELVNRIRAK--LPDTPIAII 95 (171)
T ss_pred HHHHHHHHhhhccCCCCEEEEEEecCcccCCCCHH-----HH---HHHHHHHHHHHHHH--CCCCcEEEE
Confidence 34444444444456999888855 765433211 11 13577888887653 234566654
No 162
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=23.41 E-value=65 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=32.0
Q ss_pred eecCCcEEEEEcceeeeehhHHHHHHHHHHhhhhhhh
Q 006340 595 YIGSPDVMVIVLPHIVFVVLPAILVSAALAAEKELYR 631 (649)
Q Consensus 595 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 631 (649)
..--|..|=+.|.-+.+||+|.+.+-+.++-+=|.|+
T Consensus 28 i~p~P~~~~fgl~~v~~vvip~l~~Ga~isk~~A~fL 64 (79)
T PF10161_consen 28 ILPKPEKMPFGLLRVLAVVIPGLYLGATISKNGAQFL 64 (79)
T ss_pred cCCCCccccchhheeeeeeccHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999888888888888887
No 163
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.39 E-value=1.8e+02 Score=29.25 Aligned_cols=66 Identities=15% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhccCCcEEEEcCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCCCceEEEecCC
Q 006340 50 HFSVHHPDRASDFKRIVGPALSMISPSLVLITGDLTDGKSKDLLTMKQNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGN 129 (649)
Q Consensus 50 Hls~~~~~~~~~l~~~i~~~l~~~kPD~VIitGDLtd~~~~~~~~s~Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GN 129 (649)
|+..-+|++.++++++. +.+.....|.+++.|=. +-+.+. -.++++.+++. -+.|++.-|||
T Consensus 1 h~~~iDP~k~e~~~~ia-~~v~~~gtDaI~VGGS~--gvt~~~------------~~~~v~~ik~~---~~lPvilfp~~ 62 (205)
T TIGR01769 1 HFTLIDPEKSDEIEKIA-KNAKDAGTDAIMVGGSL--GIVESN------------LDQTVKKIKKI---TNLPVILFPGN 62 (205)
T ss_pred CccccCCCcHHHHHHHH-HHHHhcCCCEEEEcCcC--CCCHHH------------HHHHHHHHHhh---cCCCEEEECCC
Confidence 44444455445666655 44556678999998862 111111 11455666542 24699999999
Q ss_pred CCCC
Q 006340 130 HDNF 133 (649)
Q Consensus 130 HD~~ 133 (649)
++.-
T Consensus 63 ~~~i 66 (205)
T TIGR01769 63 VNGL 66 (205)
T ss_pred cccc
Confidence 9963
No 164
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.51 E-value=1.1e+02 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=15.8
Q ss_pred CCCCCCCCCceEEEEEEEeCCCCceee
Q 006340 431 RAFEDSSPQRFWLEIEVTDIMGRLSSS 457 (649)
Q Consensus 431 ~~~~~g~h~~~~i~V~~~D~~G~~~~~ 457 (649)
.+++.|. |+++|+|.|..|.....
T Consensus 34 ~~L~~G~---Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 34 TNLPPGK---YTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp ES--SEE---EEEEEEEEETTS-B-SS
T ss_pred EeCCCEE---EEEEEEEECCCCCcCcc
Confidence 3556664 58999999999998755
No 165
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=21.85 E-value=1.2e+02 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.443 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCC
Q 006340 97 QNEVEWMEYQNVMQDVIKRSGLEKSIFYDIRGNHDNF 133 (649)
Q Consensus 97 Q~e~eW~~Y~~vl~~L~~~~~l~~~p~~~I~GNHD~~ 133 (649)
++.+.|..|..+.+++......+..||++|+||+-.+
T Consensus 197 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~ 233 (264)
T TIGR03709 197 KERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWF 233 (264)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence 3455688888888887765444567999999999764
No 166
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=20.67 E-value=1.3e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceEEEEEEEeCCCCceeeeeeeEEEc
Q 006340 430 YRAFEDSSPQRFWLEIEVTDIMGRLSSSELRPFSIN 465 (649)
Q Consensus 430 ~~~~~~g~h~~~~i~V~~~D~~G~~~~~~~~~fs~~ 465 (649)
|.....|.+ .|+|+|+|..|.+. .+.|+++
T Consensus 61 P~~~~~g~~---~i~v~a~D~~g~~~---~~~f~i~ 90 (97)
T smart00736 61 PTNSDVGSL---SLKVTATDSSGASA---SDTFTIT 90 (97)
T ss_pred CCCCCCcEE---EEEEEEEECCCCEE---EEEEEEE
Confidence 444445655 89999999999664 3577774
No 167
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.46 E-value=46 Score=29.26 Aligned_cols=6 Identities=50% Similarity=0.633 Sum_probs=2.2
Q ss_pred hHHHHH
Q 006340 5 VFLLLL 10 (649)
Q Consensus 5 ~~~~~~ 10 (649)
|+|.++
T Consensus 7 llL~l~ 12 (95)
T PF07172_consen 7 LLLGLL 12 (95)
T ss_pred HHHHHH
Confidence 333333
No 168
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.45 E-value=54 Score=24.56 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHhhccc
Q 006340 546 VWYGILGYLFYLVLFPW 562 (649)
Q Consensus 546 ~~~~~~~~~~y~~~~pw 562 (649)
+-.++-+|.+|+++||=
T Consensus 14 ~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 14 LLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHhhhhhheeCCC
Confidence 44677889999999984
Done!