Query 006343
Match_columns 649
No_of_seqs 759 out of 4008
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-107 1E-111 915.2 71.1 621 2-626 117-783 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7.6E-90 1.6E-94 757.9 62.7 532 35-628 84-623 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.6E-74 3.4E-79 651.5 59.5 529 35-568 48-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-64 4.9E-69 557.5 60.8 564 57-629 356-971 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-63 5E-68 549.4 53.4 492 4-528 368-908 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.8E-59 1.2E-63 512.8 47.7 455 4-466 85-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-33 2.3E-38 326.4 61.0 535 13-557 302-860 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-33 1.3E-37 320.1 61.0 546 6-560 329-897 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-24 3E-29 251.6 62.9 549 4-566 60-744 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-24 3.8E-29 250.7 54.9 540 12-562 34-699 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 8.9E-22 1.9E-26 217.9 56.4 525 17-561 55-705 (987)
12 PRK09782 bacteriophage N4 rece 99.9 9E-21 1.9E-25 210.0 55.1 531 5-556 77-733 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.7E-22 1E-26 195.4 34.7 439 74-552 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.6E-21 3.5E-26 191.7 29.8 424 138-571 53-494 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-18 4.7E-23 188.0 42.4 414 138-561 132-569 (615)
16 PRK11788 tetratricopeptide rep 99.8 5.3E-19 1.2E-23 183.0 28.8 296 145-449 47-364 (389)
17 KOG2002 TPR-containing nuclear 99.8 4E-17 8.7E-22 169.5 40.2 532 23-561 146-744 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.8 5E-17 1.1E-21 177.3 42.4 438 105-562 130-596 (615)
19 PRK11788 tetratricopeptide rep 99.8 1.5E-18 3.3E-23 179.6 28.7 299 241-572 42-356 (389)
20 PRK10049 pgaA outer membrane p 99.8 1.4E-16 2.9E-21 177.1 42.3 389 139-561 21-454 (765)
21 KOG2002 TPR-containing nuclear 99.8 1.7E-16 3.7E-21 164.9 39.6 515 21-546 178-762 (1018)
22 PRK10049 pgaA outer membrane p 99.8 9.4E-16 2E-20 170.4 44.7 403 102-537 15-464 (765)
23 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.5E-21 173.9 36.4 321 208-534 47-386 (656)
24 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.5E-21 173.9 35.9 348 168-534 42-408 (656)
25 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.1E-20 162.8 42.4 423 109-536 41-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 1.5E-14 3.3E-19 157.6 45.0 410 143-556 44-506 (822)
27 KOG0495 HAT repeat protein [RN 99.7 1E-12 2.2E-17 131.2 46.6 489 79-578 384-893 (913)
28 KOG2003 TPR repeat-containing 99.7 1.2E-14 2.7E-19 138.5 24.8 469 42-550 205-710 (840)
29 KOG2076 RNA polymerase III tra 99.7 1.9E-12 4.1E-17 134.5 42.1 532 14-546 147-786 (895)
30 KOG4422 Uncharacterized conser 99.7 2.1E-12 4.6E-17 122.8 36.1 228 132-363 206-465 (625)
31 KOG0495 HAT repeat protein [RN 99.6 6E-11 1.3E-15 118.8 44.2 479 50-542 388-893 (913)
32 KOG2076 RNA polymerase III tra 99.6 9E-11 2E-15 122.3 47.0 551 4-558 171-890 (895)
33 PF13429 TPR_15: Tetratricopep 99.6 1.6E-15 3.4E-20 148.8 10.9 254 302-560 14-274 (280)
34 KOG4422 Uncharacterized conser 99.6 2E-11 4.4E-16 116.3 35.3 437 55-529 99-590 (625)
35 KOG2003 TPR repeat-containing 99.6 3.4E-13 7.4E-18 128.8 22.9 460 10-493 205-718 (840)
36 KOG0547 Translocase of outer m 99.6 7.4E-12 1.6E-16 121.3 31.5 212 344-560 339-563 (606)
37 KOG1915 Cell cycle control pro 99.6 2.2E-10 4.7E-15 110.8 39.1 480 49-561 84-623 (677)
38 KOG4318 Bicoid mRNA stability 99.5 2.5E-10 5.3E-15 118.4 40.1 537 3-563 22-808 (1088)
39 PRK10747 putative protoheme IX 99.5 1.1E-11 2.4E-16 127.2 28.4 242 307-558 129-385 (398)
40 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.6E-15 111.5 33.1 352 100-494 162-533 (559)
41 KOG2047 mRNA splicing factor [ 99.5 8.4E-09 1.8E-13 103.7 45.7 503 6-518 102-712 (835)
42 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 115.5 31.8 260 295-560 243-516 (611)
43 KOG1126 DNA-binding cell divis 99.5 3.4E-12 7.5E-17 128.6 20.9 271 280-562 334-619 (638)
44 PRK10747 putative protoheme IX 99.5 1.1E-10 2.4E-15 119.9 32.2 281 216-530 97-391 (398)
45 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 111.5 30.5 320 233-558 163-490 (559)
46 KOG1126 DNA-binding cell divis 99.5 6.6E-12 1.4E-16 126.6 21.7 246 310-563 333-586 (638)
47 KOG1915 Cell cycle control pro 99.5 2.4E-09 5.2E-14 103.7 38.0 432 104-545 75-551 (677)
48 TIGR00540 hemY_coli hemY prote 99.4 2.3E-10 5.1E-15 118.1 32.2 276 247-528 97-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.4 6.5E-13 1.4E-17 130.2 11.4 249 272-528 15-276 (280)
50 TIGR00540 hemY_coli hemY prote 99.4 2.3E-10 5.1E-15 118.1 29.7 278 275-559 94-395 (409)
51 COG2956 Predicted N-acetylgluc 99.4 2.7E-10 5.8E-15 105.1 25.6 303 247-584 48-368 (389)
52 TIGR02521 type_IV_pilW type IV 99.4 5.3E-11 1.2E-15 113.4 22.1 197 365-562 30-231 (234)
53 KOG0547 Translocase of outer m 99.3 9.5E-09 2.1E-13 100.2 33.0 220 305-531 335-568 (606)
54 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.5E-13 96.5 33.6 268 264-537 231-508 (564)
55 KOG1173 Anaphase-promoting com 99.3 7.9E-09 1.7E-13 102.7 31.9 275 199-509 240-531 (611)
56 KOG2376 Signal recognition par 99.3 2.3E-08 5.1E-13 99.8 35.1 437 45-557 19-514 (652)
57 COG2956 Predicted N-acetylgluc 99.3 5.3E-09 1.1E-13 96.8 27.7 116 146-262 48-169 (389)
58 KOG0985 Vesicle coat protein c 99.3 1.5E-07 3.3E-12 99.1 41.4 159 396-575 1103-1261(1666)
59 COG3071 HemY Uncharacterized e 99.3 3.4E-09 7.3E-14 101.1 25.8 251 299-559 121-386 (400)
60 KOG2047 mRNA splicing factor [ 99.3 8.6E-07 1.9E-11 89.6 43.6 485 74-563 105-687 (835)
61 PF13041 PPR_2: PPR repeat fam 99.3 9.3E-12 2E-16 85.6 5.9 50 131-180 1-50 (50)
62 PRK12370 invasion protein regu 99.3 1.3E-09 2.9E-14 116.9 25.5 244 310-562 275-535 (553)
63 KOG4162 Predicted calmodulin-b 99.3 2.1E-07 4.6E-12 96.0 39.3 359 198-561 318-781 (799)
64 KOG4318 Bicoid mRNA stability 99.3 8.8E-09 1.9E-13 107.2 29.4 413 130-567 22-598 (1088)
65 COG3071 HemY Uncharacterized e 99.2 1.5E-08 3.3E-13 96.7 28.1 275 146-426 97-390 (400)
66 KOG3785 Uncharacterized conser 99.2 1.7E-07 3.7E-12 87.8 33.6 271 113-400 33-319 (557)
67 KOG1840 Kinesin light chain [C 99.2 1.9E-09 4.1E-14 110.3 21.9 190 371-560 246-476 (508)
68 PF13041 PPR_2: PPR repeat fam 99.2 4.4E-11 9.5E-16 82.2 6.8 50 395-444 1-50 (50)
69 KOG1174 Anaphase-promoting com 99.2 1.8E-07 3.8E-12 89.5 32.4 292 309-611 209-522 (564)
70 KOG3616 Selective LIM binding 99.2 1.3E-07 2.7E-12 96.5 32.1 464 49-573 455-947 (1636)
71 KOG3616 Selective LIM binding 99.2 1.2E-06 2.5E-11 89.7 38.8 491 13-557 564-1128(1636)
72 TIGR02521 type_IV_pilW type IV 99.2 1.1E-08 2.3E-13 97.4 23.6 199 296-530 31-233 (234)
73 KOG1127 TPR repeat-containing 99.2 1.1E-07 2.4E-12 100.4 32.0 525 22-564 473-1106(1238)
74 PRK11189 lipoprotein NlpI; Pro 99.2 6.7E-09 1.5E-13 102.1 22.1 208 346-560 41-262 (296)
75 KOG3785 Uncharacterized conser 99.1 3.2E-07 6.9E-12 86.0 31.0 433 21-472 36-498 (557)
76 KOG1129 TPR repeat-containing 99.1 3.7E-09 8.1E-14 97.7 17.5 227 300-563 227-458 (478)
77 PRK12370 invasion protein regu 99.1 6.3E-09 1.4E-13 111.8 22.3 210 345-561 275-501 (553)
78 COG3063 PilF Tfp pilus assembl 99.1 6E-09 1.3E-13 92.2 17.9 163 399-565 37-204 (250)
79 KOG1129 TPR repeat-containing 99.1 1.5E-09 3.3E-14 100.2 14.6 235 269-539 227-468 (478)
80 KOG4162 Predicted calmodulin-b 99.1 2.2E-07 4.7E-12 96.0 31.6 423 100-535 321-789 (799)
81 PRK11189 lipoprotein NlpI; Pro 99.1 3.9E-08 8.4E-13 96.7 24.9 231 309-545 39-282 (296)
82 KOG1127 TPR repeat-containing 99.1 8.1E-07 1.8E-11 94.1 34.8 548 7-560 493-1135(1238)
83 KOG1840 Kinesin light chain [C 99.1 2.7E-08 6E-13 101.9 23.7 161 368-528 285-478 (508)
84 KOG1125 TPR repeat-containing 99.1 1.1E-08 2.3E-13 102.2 18.5 247 343-609 297-557 (579)
85 KOG2376 Signal recognition par 99.0 2E-06 4.4E-11 86.4 32.6 441 11-495 17-518 (652)
86 PF12569 NARP1: NMDA receptor- 99.0 4E-06 8.7E-11 87.3 34.1 424 109-555 11-512 (517)
87 KOG3617 WD40 and TPR repeat-co 99.0 4.7E-05 1E-09 79.4 40.2 47 515-562 1306-1358(1416)
88 KOG1156 N-terminal acetyltrans 98.9 1.8E-05 3.9E-10 80.6 36.3 152 74-229 11-169 (700)
89 KOG4340 Uncharacterized conser 98.9 4.4E-06 9.6E-11 76.8 28.3 311 9-322 13-372 (459)
90 KOG1156 N-terminal acetyltrans 98.9 1.1E-05 2.3E-10 82.2 33.0 395 181-577 20-487 (700)
91 KOG0624 dsRNA-activated protei 98.9 1.7E-06 3.7E-11 81.0 24.9 205 208-432 43-256 (504)
92 COG3063 PilF Tfp pilus assembl 98.9 6.4E-07 1.4E-11 79.6 20.6 197 298-533 37-240 (250)
93 PF04733 Coatomer_E: Coatomer 98.9 8.3E-08 1.8E-12 92.9 16.4 125 435-562 134-264 (290)
94 KOG0985 Vesicle coat protein c 98.8 7E-05 1.5E-09 79.9 36.6 279 243-555 1057-1375(1666)
95 KOG0548 Molecular co-chaperone 98.8 9.3E-06 2E-10 81.0 28.2 237 299-547 227-473 (539)
96 PF04733 Coatomer_E: Coatomer 98.8 2.6E-07 5.6E-12 89.5 17.2 248 275-534 11-270 (290)
97 PF12569 NARP1: NMDA receptor- 98.8 5.8E-06 1.2E-10 86.2 28.1 118 436-556 198-327 (517)
98 cd05804 StaR_like StaR_like; a 98.8 7.7E-06 1.7E-10 83.5 29.1 290 267-561 8-335 (355)
99 PRK04841 transcriptional regul 98.8 4.5E-05 9.7E-10 88.4 37.5 353 210-562 348-760 (903)
100 KOG3617 WD40 and TPR repeat-co 98.7 6.2E-05 1.3E-09 78.6 32.2 401 100-555 724-1166(1416)
101 KOG0624 dsRNA-activated protei 98.7 2.2E-05 4.8E-10 73.7 26.0 327 168-536 38-377 (504)
102 KOG4340 Uncharacterized conser 98.7 3.8E-05 8.2E-10 70.8 26.8 404 136-561 13-441 (459)
103 PRK15359 type III secretion sy 98.7 3.1E-07 6.6E-12 79.4 12.9 122 418-546 14-138 (144)
104 KOG0548 Molecular co-chaperone 98.6 3.5E-05 7.6E-10 77.0 26.4 215 334-562 227-454 (539)
105 TIGR03302 OM_YfiO outer membra 98.6 3.2E-06 6.9E-11 80.6 19.1 179 365-563 32-232 (235)
106 PRK15179 Vi polysaccharide bio 98.6 3.1E-06 6.6E-11 91.6 19.6 139 395-538 84-226 (694)
107 PRK10370 formate-dependent nit 98.6 4.1E-06 8.9E-11 76.6 17.3 144 404-562 23-172 (198)
108 PLN02789 farnesyltranstransfer 98.6 2.6E-05 5.6E-10 76.7 23.4 170 374-547 79-268 (320)
109 PRK15363 pathogenicity island 98.5 1.7E-06 3.6E-11 73.4 12.6 118 467-608 34-154 (157)
110 PRK15359 type III secretion sy 98.5 9E-07 2E-11 76.5 11.3 103 454-561 15-120 (144)
111 cd05804 StaR_like StaR_like; a 98.5 0.00014 3E-09 74.2 29.3 265 296-562 6-292 (355)
112 PRK10370 formate-dependent nit 98.5 8.9E-06 1.9E-10 74.4 17.4 156 373-540 23-184 (198)
113 KOG1125 TPR repeat-containing 98.5 6.3E-06 1.4E-10 82.9 17.4 250 274-553 294-561 (579)
114 PRK04841 transcriptional regul 98.5 0.00029 6.3E-09 81.7 33.1 49 212-260 461-517 (903)
115 KOG1914 mRNA cleavage and poly 98.5 0.001 2.2E-08 66.8 31.4 201 312-516 309-526 (656)
116 KOG1128 Uncharacterized conser 98.5 6.8E-06 1.5E-10 84.8 16.7 235 200-479 395-634 (777)
117 PF12854 PPR_1: PPR repeat 98.4 3.3E-07 7.2E-12 56.4 4.2 33 198-230 2-34 (34)
118 KOG1070 rRNA processing protei 98.4 2.1E-05 4.6E-10 86.6 20.4 197 365-565 1457-1665(1710)
119 COG5010 TadD Flp pilus assembl 98.4 2.5E-05 5.4E-10 71.2 17.5 116 438-555 106-223 (257)
120 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.7E-10 83.0 16.1 212 300-529 402-616 (777)
121 COG5010 TadD Flp pilus assembl 98.4 4.1E-05 8.9E-10 69.8 17.6 176 370-550 70-251 (257)
122 PF12854 PPR_1: PPR repeat 98.4 6.6E-07 1.4E-11 55.0 4.3 33 463-495 2-34 (34)
123 COG4783 Putative Zn-dependent 98.3 0.00015 3.2E-09 72.0 22.1 113 441-555 315-429 (484)
124 TIGR03302 OM_YfiO outer membra 98.3 2.9E-05 6.2E-10 74.0 17.2 182 329-531 31-234 (235)
125 PLN02789 farnesyltranstransfer 98.3 0.00039 8.4E-09 68.5 24.8 207 299-512 40-267 (320)
126 COG4783 Putative Zn-dependent 98.3 0.00012 2.5E-09 72.8 20.6 144 398-563 307-454 (484)
127 KOG1070 rRNA processing protei 98.3 0.00018 3.8E-09 79.7 22.9 222 332-557 1459-1694(1710)
128 PRK14720 transcript cleavage f 98.3 0.00018 3.9E-09 78.9 23.0 62 502-565 225-286 (906)
129 TIGR02552 LcrH_SycD type III s 98.3 1E-05 2.2E-10 69.5 10.8 98 464-561 12-112 (135)
130 PRK15179 Vi polysaccharide bio 98.2 0.00019 4.1E-09 78.0 21.9 142 362-508 82-230 (694)
131 KOG0550 Molecular chaperone (D 98.2 7.5E-05 1.6E-09 72.2 16.3 162 397-562 168-350 (486)
132 KOG3081 Vesicle coat complex C 98.2 0.0017 3.7E-08 59.5 24.0 84 479-562 184-270 (299)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.6E-05 5.6E-10 78.2 13.5 121 435-560 172-294 (395)
134 KOG3060 Uncharacterized conser 98.2 0.0004 8.6E-09 63.0 18.8 166 372-540 58-231 (289)
135 TIGR00756 PPR pentatricopeptid 98.2 3.4E-06 7.4E-11 52.7 4.3 35 134-168 1-35 (35)
136 TIGR02552 LcrH_SycD type III s 98.1 5.1E-05 1.1E-09 65.1 13.1 114 419-536 5-121 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.5E-09 73.7 15.7 125 368-496 171-296 (395)
138 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 51.4 4.4 35 398-432 1-35 (35)
139 KOG3081 Vesicle coat complex C 98.1 0.0015 3.3E-08 59.8 20.9 83 377-460 148-235 (299)
140 KOG1914 mRNA cleavage and poly 98.0 0.02 4.3E-07 57.9 35.6 436 100-558 18-534 (656)
141 KOG2053 Mitochondrial inherita 98.0 0.035 7.6E-07 59.7 36.6 210 21-231 23-254 (932)
142 PF13812 PPR_3: Pentatricopept 98.0 9.1E-06 2E-10 50.4 4.1 34 133-166 1-34 (34)
143 KOG2053 Mitochondrial inherita 98.0 0.037 8E-07 59.5 38.0 211 49-261 20-253 (932)
144 PRK14720 transcript cleavage f 98.0 0.0018 3.8E-08 71.4 23.2 82 332-426 117-198 (906)
145 PF14432 DYW_deaminase: DYW fa 98.0 4.5E-06 9.7E-11 68.2 2.6 49 569-629 1-50 (116)
146 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.5E-10 48.7 4.5 33 398-430 2-34 (34)
147 KOG3060 Uncharacterized conser 97.9 0.0016 3.5E-08 59.2 17.9 152 400-555 55-209 (289)
148 KOG0553 TPR repeat-containing 97.9 9.4E-05 2E-09 68.9 10.4 101 442-545 91-194 (304)
149 PF09976 TPR_21: Tetratricopep 97.9 0.00067 1.4E-08 58.8 15.1 115 410-526 24-144 (145)
150 PLN03088 SGT1, suppressor of 97.9 0.00012 2.7E-09 73.7 12.0 97 441-540 11-110 (356)
151 PF13414 TPR_11: TPR repeat; P 97.8 3E-05 6.6E-10 57.4 5.1 62 499-560 2-65 (69)
152 PF09976 TPR_21: Tetratricopep 97.8 0.00046 1E-08 59.8 13.2 122 435-558 15-142 (145)
153 cd00189 TPR Tetratricopeptide 97.8 0.00014 3E-09 57.5 9.4 90 471-560 3-94 (100)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00029 6.3E-09 58.7 11.3 102 435-536 5-112 (119)
155 PLN03088 SGT1, suppressor of 97.8 0.00029 6.2E-09 71.1 12.7 104 403-510 8-113 (356)
156 PF04840 Vps16_C: Vps16, C-ter 97.8 0.038 8.3E-07 54.4 26.5 105 206-318 180-284 (319)
157 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.9E-10 46.4 3.6 31 134-164 1-31 (31)
158 COG3898 Uncharacterized membra 97.7 0.054 1.2E-06 52.7 28.7 279 278-573 97-400 (531)
159 PRK10153 DNA-binding transcrip 97.7 0.0018 3.8E-08 68.4 17.2 139 394-534 334-487 (517)
160 KOG0553 TPR repeat-containing 97.7 0.00026 5.7E-09 66.0 9.3 84 475-558 88-173 (304)
161 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00047 1E-08 57.4 10.3 94 469-562 3-104 (119)
162 PF01535 PPR: PPR repeat; Int 97.6 6.7E-05 1.5E-09 45.2 3.4 31 398-428 1-31 (31)
163 PRK02603 photosystem I assembl 97.6 0.0013 2.7E-08 59.0 13.0 130 396-549 34-166 (172)
164 PF07079 DUF1347: Protein of u 97.6 0.09 2E-06 52.3 31.9 304 16-324 16-408 (549)
165 PF12895 Apc3: Anaphase-promot 97.6 3.6E-05 7.7E-10 59.6 2.5 75 482-557 3-81 (84)
166 KOG1258 mRNA processing protei 97.6 0.12 2.6E-06 53.4 27.7 183 365-550 296-491 (577)
167 PRK15331 chaperone protein Sic 97.6 0.0013 2.9E-08 56.3 11.8 100 463-562 31-133 (165)
168 cd00189 TPR Tetratricopeptide 97.6 0.00069 1.5E-08 53.3 9.9 87 442-531 10-99 (100)
169 PF13431 TPR_17: Tetratricopep 97.6 3.5E-05 7.6E-10 47.3 1.6 33 522-554 1-33 (34)
170 CHL00033 ycf3 photosystem I as 97.6 0.0037 8.1E-08 55.8 15.2 79 398-479 36-117 (168)
171 PF13432 TPR_16: Tetratricopep 97.5 0.00019 4.2E-09 52.2 5.5 55 506-560 3-57 (65)
172 PF07079 DUF1347: Protein of u 97.5 0.11 2.5E-06 51.6 33.2 435 48-505 16-530 (549)
173 PF13432 TPR_16: Tetratricopep 97.5 0.00015 3.3E-09 52.8 4.8 61 474-534 3-65 (65)
174 CHL00033 ycf3 photosystem I as 97.5 0.00064 1.4E-08 60.7 9.6 88 468-555 35-134 (168)
175 PRK10153 DNA-binding transcrip 97.5 0.0022 4.9E-08 67.6 14.9 133 426-562 331-482 (517)
176 COG4235 Cytochrome c biogenesi 97.5 0.00065 1.4E-08 63.9 9.6 101 465-565 152-258 (287)
177 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.7E-06 50.9 26.5 107 370-493 181-287 (319)
178 PF05843 Suf: Suppressor of fo 97.5 0.0024 5.3E-08 62.1 14.0 144 398-545 2-151 (280)
179 PRK02603 photosystem I assembl 97.5 0.00093 2E-08 59.9 10.2 82 468-549 35-121 (172)
180 PF14559 TPR_19: Tetratricopep 97.4 0.0002 4.3E-09 52.8 4.1 26 506-531 31-56 (68)
181 PF14938 SNAP: Soluble NSF att 97.4 0.065 1.4E-06 52.4 22.5 102 298-399 157-270 (282)
182 KOG2041 WD40 repeat protein [G 97.4 0.26 5.6E-06 51.7 31.0 369 100-527 690-1084(1189)
183 PF13414 TPR_11: TPR repeat; P 97.4 0.00041 8.8E-09 51.3 5.2 65 467-531 2-69 (69)
184 KOG2796 Uncharacterized conser 97.3 0.017 3.7E-07 52.9 15.8 174 369-542 139-328 (366)
185 PF14559 TPR_19: Tetratricopep 97.3 0.00051 1.1E-08 50.5 5.3 52 511-562 2-53 (68)
186 PF14938 SNAP: Soluble NSF att 97.3 0.095 2.1E-06 51.2 22.4 97 399-495 157-264 (282)
187 COG4700 Uncharacterized protei 97.2 0.027 5.8E-07 48.9 15.2 125 428-555 85-214 (251)
188 PF13371 TPR_9: Tetratricopept 97.2 0.00088 1.9E-08 50.1 5.9 54 507-560 2-55 (73)
189 PRK15363 pathogenicity island 97.2 0.0086 1.9E-07 51.2 12.3 17 408-424 46-62 (157)
190 PF12895 Apc3: Anaphase-promot 97.2 0.00087 1.9E-08 51.7 5.9 80 410-493 2-83 (84)
191 KOG2280 Vacuolar assembly/sort 97.2 0.43 9.3E-06 50.7 30.9 99 161-260 425-533 (829)
192 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0014 3E-08 65.6 8.0 62 500-561 75-140 (453)
193 PF13428 TPR_14: Tetratricopep 97.1 0.00076 1.7E-08 44.4 3.8 42 501-542 2-43 (44)
194 PF08579 RPM2: Mitochondrial r 97.1 0.0065 1.4E-07 48.1 9.3 80 136-215 28-116 (120)
195 KOG1538 Uncharacterized conser 97.1 0.069 1.5E-06 55.2 18.7 226 133-394 556-801 (1081)
196 PF10037 MRP-S27: Mitochondria 97.0 0.013 2.9E-07 59.4 13.8 120 326-445 61-186 (429)
197 COG4700 Uncharacterized protei 97.0 0.016 3.4E-07 50.2 12.1 106 457-562 78-188 (251)
198 PF12688 TPR_5: Tetratrico pep 97.0 0.0064 1.4E-07 50.0 9.5 82 474-555 7-96 (120)
199 PF12688 TPR_5: Tetratrico pep 97.0 0.017 3.6E-07 47.6 11.8 91 403-493 7-100 (120)
200 PF13371 TPR_9: Tetratricopept 97.0 0.0022 4.8E-08 47.8 6.0 65 476-540 3-69 (73)
201 PRK10866 outer membrane biogen 96.9 0.32 6.8E-06 46.1 21.6 67 295-363 31-101 (243)
202 PRK10866 outer membrane biogen 96.9 0.13 2.8E-06 48.8 18.7 50 276-325 43-98 (243)
203 KOG1130 Predicted G-alpha GTPa 96.9 0.0059 1.3E-07 59.4 9.3 125 434-558 197-339 (639)
204 PF13281 DUF4071: Domain of un 96.8 0.14 3.1E-06 50.9 18.6 161 368-531 143-336 (374)
205 PF06239 ECSIT: Evolutionarily 96.8 0.037 8.1E-07 49.7 13.0 105 328-447 44-153 (228)
206 PRK10803 tol-pal system protei 96.8 0.0083 1.8E-07 57.3 9.7 88 471-558 146-241 (263)
207 PF06239 ECSIT: Evolutionarily 96.8 0.016 3.5E-07 52.0 10.6 98 386-484 34-154 (228)
208 KOG2796 Uncharacterized conser 96.8 0.26 5.7E-06 45.4 18.2 128 299-426 180-315 (366)
209 PF08579 RPM2: Mitochondrial r 96.8 0.021 4.6E-07 45.3 9.9 81 298-378 27-116 (120)
210 PF10037 MRP-S27: Mitochondria 96.7 0.01 2.3E-07 60.1 10.3 115 102-216 66-186 (429)
211 KOG4555 TPR repeat-containing 96.7 0.012 2.6E-07 47.7 8.3 89 476-564 51-145 (175)
212 KOG0550 Molecular chaperone (D 96.7 0.29 6.4E-06 48.2 18.8 45 511-555 383-435 (486)
213 PF05843 Suf: Suppressor of fo 96.7 0.019 4.2E-07 55.8 11.4 129 433-563 2-136 (280)
214 KOG1258 mRNA processing protei 96.7 1.1 2.3E-05 46.8 30.1 136 27-162 32-180 (577)
215 PRK10803 tol-pal system protei 96.6 0.042 9.2E-07 52.5 12.8 90 443-535 154-252 (263)
216 KOG0543 FKBP-type peptidyl-pro 96.6 0.014 3.1E-07 57.2 9.5 83 501-609 258-340 (397)
217 KOG2280 Vacuolar assembly/sort 96.5 1.5 3.2E-05 46.9 27.9 318 208-557 442-793 (829)
218 KOG2041 WD40 repeat protein [G 96.5 1.4 3E-05 46.5 30.7 256 22-324 678-951 (1189)
219 KOG1538 Uncharacterized conser 96.5 0.11 2.5E-06 53.7 15.4 184 78-293 639-845 (1081)
220 PRK11906 transcriptional regul 96.4 0.044 9.6E-07 55.3 11.9 156 398-556 252-429 (458)
221 PF03704 BTAD: Bacterial trans 96.4 0.049 1.1E-06 47.2 11.1 106 443-560 17-122 (146)
222 PRK11906 transcriptional regul 96.2 0.37 8E-06 48.9 17.3 117 447-563 273-402 (458)
223 PF13525 YfiO: Outer membrane 96.2 0.98 2.1E-05 41.6 19.1 60 302-361 11-72 (203)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.7 3.7E-05 43.5 30.1 134 396-533 396-535 (660)
225 PF13525 YfiO: Outer membrane 96.1 0.4 8.8E-06 44.1 16.0 166 373-555 12-199 (203)
226 COG0457 NrfG FOG: TPR repeat [ 96.0 1.3 2.8E-05 41.1 26.4 186 367-556 60-258 (291)
227 COG4235 Cytochrome c biogenesi 95.9 0.16 3.4E-06 48.2 12.4 97 395-495 154-254 (287)
228 KOG0543 FKBP-type peptidyl-pro 95.9 0.058 1.3E-06 53.1 9.8 135 404-560 215-352 (397)
229 PF13424 TPR_12: Tetratricopep 95.9 0.0089 1.9E-07 45.3 3.4 27 502-528 48-74 (78)
230 PF13424 TPR_12: Tetratricopep 95.9 0.0098 2.1E-07 45.0 3.6 58 501-558 6-70 (78)
231 PF04184 ST7: ST7 protein; In 95.8 0.82 1.8E-05 46.6 17.4 100 437-536 264-382 (539)
232 COG3898 Uncharacterized membra 95.8 2.2 4.8E-05 42.0 26.5 282 216-505 97-400 (531)
233 COG4105 ComL DNA uptake lipopr 95.6 1.6 3.4E-05 40.7 17.2 59 505-563 172-233 (254)
234 PF00515 TPR_1: Tetratricopept 95.6 0.02 4.3E-07 35.0 3.5 32 501-532 2-33 (34)
235 PF08631 SPO22: Meiosis protei 95.6 2.5 5.5E-05 41.1 21.9 120 311-432 51-192 (278)
236 PF03704 BTAD: Bacterial trans 95.5 0.14 3E-06 44.3 10.1 70 400-470 65-138 (146)
237 KOG1130 Predicted G-alpha GTPa 95.5 0.082 1.8E-06 51.8 9.0 272 177-460 26-343 (639)
238 PF07719 TPR_2: Tetratricopept 95.5 0.03 6.5E-07 34.1 4.2 33 501-533 2-34 (34)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.074 1.6E-06 53.6 8.9 63 467-529 74-141 (453)
240 COG3118 Thioredoxin domain-con 95.5 0.39 8.4E-06 45.5 12.9 119 441-562 143-265 (304)
241 COG0457 NrfG FOG: TPR repeat [ 95.4 2.2 4.8E-05 39.5 23.7 219 310-532 37-268 (291)
242 PRK09687 putative lyase; Provi 95.3 3 6.5E-05 40.5 27.2 237 98-341 33-277 (280)
243 PF12921 ATP13: Mitochondrial 95.2 0.15 3.3E-06 42.4 8.7 50 463-512 47-100 (126)
244 PF12921 ATP13: Mitochondrial 95.2 0.27 5.9E-06 40.9 10.1 97 366-478 2-98 (126)
245 PF09613 HrpB1_HrpK: Bacterial 95.1 0.85 1.8E-05 39.3 12.9 98 441-542 19-118 (160)
246 PF04053 Coatomer_WDAD: Coatom 95.1 0.2 4.4E-06 51.8 11.0 132 407-564 271-403 (443)
247 KOG3941 Intermediate in Toll s 95.0 0.23 5.1E-06 46.2 9.9 111 384-495 52-186 (406)
248 COG5107 RNA14 Pre-mRNA 3'-end 95.0 4.5 9.7E-05 40.7 31.7 73 26-98 28-103 (660)
249 KOG2114 Vacuolar assembly/sort 94.9 7.2 0.00016 42.6 29.8 178 105-294 337-519 (933)
250 COG3118 Thioredoxin domain-con 94.8 2.6 5.6E-05 40.1 16.4 175 384-561 121-300 (304)
251 KOG1585 Protein required for f 94.7 2.7 5.9E-05 38.7 15.5 87 469-556 151-249 (308)
252 KOG1920 IkappaB kinase complex 94.5 10 0.00022 43.3 22.3 197 41-293 793-1027(1265)
253 COG1729 Uncharacterized protei 94.5 0.4 8.6E-06 45.0 10.3 96 399-495 144-242 (262)
254 KOG1941 Acetylcholine receptor 94.4 0.48 1E-05 45.9 10.8 45 306-350 16-62 (518)
255 PRK09687 putative lyase; Provi 94.4 5.3 0.00012 38.8 26.7 80 263-344 35-118 (280)
256 smart00299 CLH Clathrin heavy 94.3 2.9 6.4E-05 35.6 15.6 29 135-163 9-37 (140)
257 KOG4234 TPR repeat-containing 94.3 0.21 4.6E-06 44.1 7.5 88 476-563 103-197 (271)
258 PF13281 DUF4071: Domain of un 94.2 4.2 9E-05 40.8 17.3 32 309-340 195-226 (374)
259 PRK15331 chaperone protein Sic 94.0 1.5 3.2E-05 38.0 11.9 86 407-495 47-132 (165)
260 PF10345 Cohesin_load: Cohesin 93.9 12 0.00026 41.2 31.0 156 73-229 61-251 (608)
261 PF13512 TPR_18: Tetratricopep 93.9 1.1 2.4E-05 37.8 10.8 73 475-547 17-97 (142)
262 PF04053 Coatomer_WDAD: Coatom 93.9 2.3 4.9E-05 44.2 15.4 129 74-227 298-426 (443)
263 COG1729 Uncharacterized protei 93.7 0.55 1.2E-05 44.1 9.6 102 434-536 144-251 (262)
264 COG4105 ComL DNA uptake lipopr 93.5 6.5 0.00014 36.8 16.7 56 403-459 173-231 (254)
265 KOG2066 Vacuolar assembly/sort 93.4 14 0.0003 40.2 25.5 38 480-520 673-710 (846)
266 KOG2066 Vacuolar assembly/sort 93.4 14 0.0003 40.1 27.4 171 45-235 363-537 (846)
267 KOG2114 Vacuolar assembly/sort 93.3 15 0.00033 40.3 22.2 52 372-423 711-762 (933)
268 KOG4555 TPR repeat-containing 93.3 0.46 1E-05 38.8 7.1 86 442-530 53-145 (175)
269 KOG1585 Protein required for f 93.2 4.4 9.6E-05 37.4 14.0 102 41-160 34-137 (308)
270 PF10300 DUF3808: Protein of u 93.2 6.8 0.00015 41.3 18.0 113 445-560 246-373 (468)
271 PF02259 FAT: FAT domain; Int 93.2 11 0.00023 38.2 20.2 146 395-546 144-304 (352)
272 KOG2610 Uncharacterized conser 93.0 2 4.3E-05 41.4 12.0 151 379-534 116-283 (491)
273 PF09205 DUF1955: Domain of un 93.0 3.5 7.6E-05 34.1 11.7 54 273-326 94-150 (161)
274 PF13181 TPR_8: Tetratricopept 93.0 0.16 3.5E-06 30.8 3.5 32 501-532 2-33 (34)
275 PF10300 DUF3808: Protein of u 92.9 7.3 0.00016 41.1 17.8 159 299-459 191-374 (468)
276 smart00299 CLH Clathrin heavy 92.9 5.4 0.00012 34.0 15.9 126 172-308 11-137 (140)
277 KOG2610 Uncharacterized conser 92.8 1.1 2.5E-05 42.9 10.2 159 409-570 115-283 (491)
278 KOG3941 Intermediate in Toll s 92.7 0.79 1.7E-05 42.9 8.8 98 121-218 53-173 (406)
279 PF04184 ST7: ST7 protein; In 92.3 2.6 5.7E-05 43.1 12.5 68 504-571 263-332 (539)
280 KOG1941 Acetylcholine receptor 92.1 7.4 0.00016 38.1 14.7 92 297-388 84-184 (518)
281 COG4785 NlpI Lipoprotein NlpI, 92.1 9 0.0002 34.7 14.2 160 396-562 98-265 (297)
282 PF13512 TPR_18: Tetratricopep 92.1 3.7 8E-05 34.7 11.3 114 404-534 17-133 (142)
283 PF13428 TPR_14: Tetratricopep 91.9 0.36 7.7E-06 31.5 4.3 26 470-495 3-28 (44)
284 PF09205 DUF1955: Domain of un 91.8 6.6 0.00014 32.5 13.1 140 408-566 13-152 (161)
285 PF13176 TPR_7: Tetratricopept 91.6 0.28 6E-06 30.4 3.3 26 503-528 2-27 (36)
286 KOG4648 Uncharacterized conser 91.5 0.48 1E-05 45.5 6.1 91 442-535 107-200 (536)
287 KOG1464 COP9 signalosome, subu 91.4 12 0.00026 35.0 14.7 208 300-513 69-317 (440)
288 TIGR02561 HrpB1_HrpK type III 91.3 7.2 0.00016 33.2 12.1 85 443-531 21-108 (153)
289 PF09613 HrpB1_HrpK: Bacterial 90.9 1.2 2.7E-05 38.3 7.6 69 480-548 22-92 (160)
290 PF07035 Mic1: Colon cancer-as 90.9 9.1 0.0002 33.5 13.0 33 154-186 15-47 (167)
291 PRK10941 hypothetical protein; 90.5 2.1 4.5E-05 41.1 9.5 82 502-607 183-265 (269)
292 PF00637 Clathrin: Region in C 90.4 0.47 1E-05 40.8 4.8 128 174-311 13-140 (143)
293 COG2976 Uncharacterized protei 90.0 14 0.0003 33.1 13.6 113 415-532 70-191 (207)
294 TIGR02561 HrpB1_HrpK type III 89.9 1.6 3.5E-05 36.9 7.2 52 512-563 22-73 (153)
295 PRK13800 putative oxidoreducta 89.7 46 0.001 38.6 26.3 255 255-528 625-880 (897)
296 KOG4648 Uncharacterized conser 89.4 0.61 1.3E-05 44.8 4.9 81 475-555 104-186 (536)
297 PF13176 TPR_7: Tetratricopept 89.2 0.82 1.8E-05 28.2 3.9 26 298-323 1-26 (36)
298 PF13170 DUF4003: Protein of u 88.8 14 0.00031 36.1 14.0 66 414-480 160-229 (297)
299 KOG4234 TPR repeat-containing 88.7 5.1 0.00011 35.7 9.6 70 472-541 138-209 (271)
300 COG3629 DnrI DNA-binding trans 88.7 3.2 7E-05 39.7 9.2 75 366-440 153-235 (280)
301 PRK11619 lytic murein transgly 88.7 42 0.00092 37.0 32.7 125 410-541 254-383 (644)
302 PF10602 RPN7: 26S proteasome 88.2 11 0.00025 33.6 12.0 55 369-423 39-99 (177)
303 TIGR02508 type_III_yscG type I 87.7 11 0.00024 29.4 9.7 58 274-334 48-105 (115)
304 COG3629 DnrI DNA-binding trans 87.4 5.9 0.00013 38.0 10.1 79 398-477 154-236 (280)
305 PF14853 Fis1_TPR_C: Fis1 C-te 87.4 1.1 2.3E-05 30.7 3.8 34 505-538 6-39 (53)
306 PF07035 Mic1: Colon cancer-as 86.9 21 0.00045 31.4 13.7 48 189-236 15-62 (167)
307 PF13431 TPR_17: Tetratricopep 86.8 0.67 1.5E-05 28.2 2.4 24 465-488 9-33 (34)
308 PF10602 RPN7: 26S proteasome 86.7 10 0.00022 33.8 10.9 62 298-359 38-101 (177)
309 PF06552 TOM20_plant: Plant sp 86.5 6.5 0.00014 34.6 9.0 87 448-565 51-138 (186)
310 PRK12798 chemotaxis protein; R 86.1 42 0.0009 34.1 20.4 168 379-547 125-303 (421)
311 smart00028 TPR Tetratricopepti 86.0 1.4 3.1E-05 25.3 3.8 31 502-532 3-33 (34)
312 PF00515 TPR_1: Tetratricopept 85.8 1.7 3.7E-05 26.1 3.9 28 297-324 2-29 (34)
313 COG4649 Uncharacterized protei 85.8 24 0.00051 31.0 15.3 119 407-528 68-195 (221)
314 PF13374 TPR_10: Tetratricopep 85.1 1.7 3.7E-05 27.5 3.9 27 502-528 4-30 (42)
315 KOG1586 Protein required for f 84.8 33 0.00071 31.8 12.9 91 446-536 128-231 (288)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 83.5 10 0.00022 29.4 7.7 63 412-476 22-84 (103)
317 PF13174 TPR_6: Tetratricopept 83.3 1.7 3.8E-05 25.7 3.1 28 505-532 5-32 (33)
318 KOG0276 Vesicle coat complex C 83.2 13 0.00027 39.2 10.7 99 114-229 649-747 (794)
319 COG4455 ImpE Protein of avirul 82.8 34 0.00074 31.3 11.9 125 400-535 4-140 (273)
320 COG1747 Uncharacterized N-term 82.7 65 0.0014 33.6 20.8 158 296-460 66-233 (711)
321 KOG4570 Uncharacterized conser 82.4 13 0.00028 35.8 9.6 96 361-460 59-163 (418)
322 PF02284 COX5A: Cytochrome c o 82.3 11 0.00023 29.7 7.5 61 415-477 28-88 (108)
323 KOG1586 Protein required for f 81.6 32 0.00069 31.8 11.4 22 512-533 166-187 (288)
324 KOG0276 Vesicle coat complex C 81.6 18 0.0004 38.1 11.1 148 216-391 599-746 (794)
325 PF13170 DUF4003: Protein of u 81.5 45 0.00097 32.7 13.6 125 313-439 79-224 (297)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 81.4 9.7 0.00021 29.6 6.9 60 149-210 23-83 (103)
327 KOG1308 Hsp70-interacting prot 81.4 1.1 2.4E-05 43.3 2.5 86 481-566 127-214 (377)
328 COG4649 Uncharacterized protei 80.4 40 0.00087 29.6 13.6 87 375-461 103-196 (221)
329 PF00637 Clathrin: Region in C 80.3 2.7 5.9E-05 36.0 4.4 85 138-229 12-96 (143)
330 KOG1920 IkappaB kinase complex 80.1 1.2E+02 0.0027 35.1 27.9 27 135-161 792-820 (1265)
331 PRK15180 Vi polysaccharide bio 80.0 12 0.00026 38.1 9.1 119 410-532 302-423 (831)
332 PF07719 TPR_2: Tetratricopept 79.9 4 8.6E-05 24.3 3.9 27 298-324 3-29 (34)
333 KOG2396 HAT (Half-A-TPR) repea 79.7 82 0.0018 32.8 30.0 455 27-537 95-568 (568)
334 PF07721 TPR_4: Tetratricopept 79.7 2.7 5.9E-05 23.6 2.8 23 535-557 2-24 (26)
335 PF11207 DUF2989: Protein of u 78.3 11 0.00024 34.0 7.5 74 480-554 119-198 (203)
336 PF13374 TPR_10: Tetratricopep 78.1 5.5 0.00012 25.0 4.4 28 398-425 3-30 (42)
337 PRK15180 Vi polysaccharide bio 77.8 38 0.00083 34.7 11.7 139 444-587 301-442 (831)
338 COG2976 Uncharacterized protei 77.5 54 0.0012 29.5 12.1 57 371-427 131-189 (207)
339 PF13934 ELYS: Nuclear pore co 77.1 50 0.0011 30.9 12.0 107 399-514 78-186 (226)
340 KOG4507 Uncharacterized conser 77.1 8.5 0.00018 40.2 7.2 100 443-545 618-721 (886)
341 PF08631 SPO22: Meiosis protei 76.9 75 0.0016 30.8 24.1 17 308-324 5-21 (278)
342 COG2909 MalT ATP-dependent tra 76.6 1.4E+02 0.003 33.6 19.7 182 377-562 426-646 (894)
343 KOG0551 Hsp90 co-chaperone CNS 76.5 12 0.00026 36.3 7.6 88 468-555 81-174 (390)
344 PF02284 COX5A: Cytochrome c o 76.2 15 0.00033 28.9 6.7 46 493-538 38-83 (108)
345 PRK11619 lytic murein transgly 76.1 1.3E+02 0.0029 33.2 39.0 430 21-470 47-513 (644)
346 PF11207 DUF2989: Protein of u 75.9 19 0.00042 32.5 8.3 74 414-488 123-198 (203)
347 PF10345 Cohesin_load: Cohesin 75.9 1.3E+02 0.0029 33.1 34.4 191 68-261 27-252 (608)
348 PRK13800 putative oxidoreducta 75.3 1.7E+02 0.0037 34.1 28.2 261 223-503 624-887 (897)
349 KOG1550 Extracellular protein 75.0 1.3E+02 0.0028 32.7 16.2 151 409-566 261-429 (552)
350 COG4785 NlpI Lipoprotein NlpI, 74.6 70 0.0015 29.3 13.3 179 344-530 78-267 (297)
351 PF07721 TPR_4: Tetratricopept 74.5 6.2 0.00013 22.1 3.3 20 473-492 6-25 (26)
352 KOG0890 Protein kinase of the 74.2 2.5E+02 0.0055 35.6 32.1 305 239-561 1388-1729(2382)
353 PF02259 FAT: FAT domain; Int 74.1 1E+02 0.0022 30.9 21.5 60 366-425 146-212 (352)
354 COG3947 Response regulator con 74.1 12 0.00025 35.7 6.7 59 503-561 282-340 (361)
355 PF14853 Fis1_TPR_C: Fis1 C-te 74.0 19 0.00041 24.6 6.1 50 536-611 3-52 (53)
356 PF14561 TPR_20: Tetratricopep 74.0 4.6 0.0001 31.3 3.6 51 500-550 22-74 (90)
357 PF04097 Nic96: Nup93/Nic96; 73.6 95 0.0021 34.2 14.9 41 238-278 115-158 (613)
358 TIGR02508 type_III_yscG type I 73.6 42 0.00092 26.4 9.1 62 373-437 46-107 (115)
359 COG4455 ImpE Protein of avirul 73.0 11 0.00025 34.2 6.1 65 471-535 4-70 (273)
360 PF13929 mRNA_stabil: mRNA sta 72.4 60 0.0013 31.3 11.1 72 453-524 187-262 (292)
361 PF13181 TPR_8: Tetratricopept 71.9 9.2 0.0002 22.7 4.0 27 298-324 3-29 (34)
362 PF09986 DUF2225: Uncharacteri 71.0 14 0.0003 34.2 6.7 63 501-563 119-195 (214)
363 PF04910 Tcf25: Transcriptiona 70.6 1.3E+02 0.0027 30.6 17.8 88 440-531 111-224 (360)
364 KOG4570 Uncharacterized conser 70.1 12 0.00025 36.1 5.9 96 102-198 64-165 (418)
365 PF10579 Rapsyn_N: Rapsyn N-te 69.5 10 0.00022 28.2 4.2 47 444-490 18-65 (80)
366 KOG3807 Predicted membrane pro 68.5 67 0.0015 31.3 10.5 21 518-538 380-400 (556)
367 KOG0292 Vesicle coat complex C 68.0 5.8 0.00013 43.4 3.8 117 410-558 606-722 (1202)
368 PF13174 TPR_6: Tetratricopept 67.9 6.2 0.00013 23.2 2.6 26 536-561 2-27 (33)
369 TIGR02270 conserved hypothetic 67.9 1.6E+02 0.0034 30.5 23.6 133 44-183 44-176 (410)
370 KOG4642 Chaperone-dependent E3 67.5 13 0.00029 34.3 5.4 117 441-560 19-143 (284)
371 KOG3364 Membrane protein invol 67.4 50 0.0011 27.7 8.2 29 505-533 76-104 (149)
372 KOG4279 Serine/threonine prote 67.4 64 0.0014 35.2 11.0 180 298-531 203-397 (1226)
373 PF09670 Cas_Cas02710: CRISPR- 67.2 80 0.0017 32.3 11.8 122 406-528 140-269 (379)
374 KOG0376 Serine-threonine phosp 66.4 5.2 0.00011 40.8 3.0 95 440-537 12-109 (476)
375 PF04190 DUF410: Protein of un 64.9 1.3E+02 0.0029 28.7 13.0 109 143-252 20-139 (260)
376 COG1747 Uncharacterized N-term 64.6 1.9E+02 0.0041 30.4 18.5 89 368-459 68-158 (711)
377 PF06552 TOM20_plant: Plant sp 64.5 25 0.00054 31.1 6.4 34 516-549 51-84 (186)
378 KOG3364 Membrane protein invol 64.4 81 0.0017 26.5 8.8 90 497-612 29-123 (149)
379 KOG0545 Aryl-hydrocarbon recep 63.7 70 0.0015 29.9 9.2 50 511-560 241-291 (329)
380 PF15469 Sec5: Exocyst complex 63.1 1.1E+02 0.0024 27.4 10.7 118 400-539 60-178 (182)
381 KOG2063 Vacuolar assembly/sort 62.1 2.9E+02 0.0062 31.6 23.3 131 206-343 507-638 (877)
382 COG4941 Predicted RNA polymera 62.0 1.7E+02 0.0037 28.9 12.0 121 412-536 271-401 (415)
383 PF13934 ELYS: Nuclear pore co 61.6 94 0.002 29.0 10.3 115 378-502 90-206 (226)
384 KOG3824 Huntingtin interacting 61.4 26 0.00056 33.7 6.3 61 479-539 127-189 (472)
385 smart00386 HAT HAT (Half-A-TPR 61.3 13 0.00028 21.6 3.1 29 514-542 1-29 (33)
386 cd08819 CARD_MDA5_2 Caspase ac 61.1 29 0.00064 26.5 5.4 60 92-152 23-85 (88)
387 PF13762 MNE1: Mitochondrial s 61.0 51 0.0011 28.1 7.5 51 131-181 77-128 (145)
388 COG2909 MalT ATP-dependent tra 60.7 2.9E+02 0.0063 31.2 23.8 218 275-493 425-684 (894)
389 PF07720 TPR_3: Tetratricopept 60.1 25 0.00053 21.7 4.1 31 502-532 3-35 (36)
390 TIGR03504 FimV_Cterm FimV C-te 59.8 21 0.00046 23.2 3.9 26 301-326 4-29 (44)
391 PRK10941 hypothetical protein; 59.2 63 0.0014 31.1 8.8 67 472-538 185-253 (269)
392 KOG2063 Vacuolar assembly/sort 59.0 3.2E+02 0.007 31.2 17.9 27 298-324 506-532 (877)
393 COG4976 Predicted methyltransf 59.0 14 0.00029 34.0 3.9 57 477-533 4-62 (287)
394 cd08819 CARD_MDA5_2 Caspase ac 58.3 35 0.00075 26.1 5.4 37 278-315 49-85 (88)
395 PF11768 DUF3312: Protein of u 58.2 1.2E+02 0.0027 32.0 11.1 56 370-425 412-472 (545)
396 PF12862 Apc5: Anaphase-promot 58.0 27 0.00059 27.2 5.2 52 510-561 8-69 (94)
397 KOG4077 Cytochrome c oxidase, 57.6 70 0.0015 26.4 7.2 60 415-476 67-126 (149)
398 PF14561 TPR_20: Tetratricopep 57.0 89 0.0019 24.1 9.8 35 521-555 9-43 (90)
399 PF07163 Pex26: Pex26 protein; 56.8 1.3E+02 0.0028 28.9 9.9 89 404-495 90-185 (309)
400 PF06957 COPI_C: Coatomer (COP 56.7 62 0.0013 33.3 8.6 31 502-532 302-332 (422)
401 TIGR03504 FimV_Cterm FimV C-te 56.6 27 0.00058 22.8 4.0 24 403-426 5-28 (44)
402 KOG1550 Extracellular protein 56.6 2.9E+02 0.0064 30.0 23.4 76 483-561 454-536 (552)
403 PF11846 DUF3366: Domain of un 55.7 42 0.00091 30.4 6.9 34 498-531 142-175 (193)
404 PF09477 Type_III_YscG: Bacter 55.2 1.1E+02 0.0023 24.6 8.9 86 347-436 22-107 (116)
405 KOG2422 Uncharacterized conser 54.4 1.4E+02 0.003 31.8 10.5 34 512-545 354-388 (665)
406 KOG0686 COP9 signalosome, subu 54.1 2.6E+02 0.0055 28.5 13.6 55 205-259 152-212 (466)
407 KOG2581 26S proteasome regulat 54.0 2.6E+02 0.0055 28.5 14.7 123 410-532 139-279 (493)
408 KOG4507 Uncharacterized conser 53.6 1E+02 0.0023 32.7 9.5 131 429-562 568-705 (886)
409 KOG1498 26S proteasome regulat 53.1 2.6E+02 0.0056 28.3 15.0 115 472-586 135-264 (439)
410 PF04967 HTH_10: HTH DNA bindi 51.8 4.5 9.8E-05 27.6 -0.1 22 624-645 3-24 (53)
411 PF08424 NRDE-2: NRDE-2, neces 51.6 2.6E+02 0.0056 27.8 15.1 114 413-530 47-184 (321)
412 TIGR02414 pepN_proteo aminopep 51.6 4.4E+02 0.0095 30.5 15.6 159 400-562 675-844 (863)
413 PRK13342 recombination factor 51.4 3E+02 0.0065 28.5 15.4 101 328-446 173-279 (413)
414 PF04190 DUF410: Protein of un 51.3 2.3E+02 0.005 27.2 18.9 140 306-460 20-169 (260)
415 PF00244 14-3-3: 14-3-3 protei 50.9 2.2E+02 0.0048 26.8 10.9 157 403-560 7-195 (236)
416 KOG3824 Huntingtin interacting 50.8 27 0.00059 33.5 4.6 91 510-612 126-217 (472)
417 PF11846 DUF3366: Domain of un 50.4 49 0.0011 30.0 6.4 52 444-495 120-171 (193)
418 KOG2471 TPR repeat-containing 50.4 3.2E+02 0.007 28.6 12.7 101 375-478 249-379 (696)
419 KOG0403 Neoplastic transformat 50.2 3.1E+02 0.0067 28.3 15.1 236 42-277 218-586 (645)
420 PF00244 14-3-3: 14-3-3 protei 49.6 2.3E+02 0.005 26.7 11.3 57 301-357 6-63 (236)
421 TIGR02710 CRISPR-associated pr 49.2 2.9E+02 0.0063 28.1 11.8 52 405-456 138-195 (380)
422 cd00280 TRFH Telomeric Repeat 48.6 2E+02 0.0043 25.7 10.0 50 505-555 116-165 (200)
423 PRK14015 pepN aminopeptidase N 48.5 4.9E+02 0.011 30.2 15.8 158 401-562 686-854 (875)
424 PF07575 Nucleopor_Nup85: Nup8 47.6 4.1E+02 0.0089 29.0 16.9 25 39-64 150-174 (566)
425 PF10366 Vps39_1: Vacuolar sor 46.9 1.2E+02 0.0025 24.5 7.2 27 135-161 41-67 (108)
426 KOG0686 COP9 signalosome, subu 46.8 3.3E+02 0.0072 27.7 12.0 89 368-458 152-255 (466)
427 PF10366 Vps39_1: Vacuolar sor 45.8 1.5E+02 0.0033 23.8 7.7 27 399-425 41-67 (108)
428 KOG0890 Protein kinase of the 45.1 7.9E+02 0.017 31.6 31.9 305 77-393 1389-1729(2382)
429 COG2256 MGS1 ATPase related to 45.0 3.6E+02 0.0078 27.6 12.3 52 294-345 244-298 (436)
430 cd08326 CARD_CASP9 Caspase act 44.7 49 0.0011 25.2 4.5 58 93-150 21-78 (84)
431 KOG2659 LisH motif-containing 44.4 1.9E+02 0.0042 26.8 8.9 92 399-493 28-128 (228)
432 PF04090 RNA_pol_I_TF: RNA pol 44.4 2.5E+02 0.0053 25.6 9.5 28 399-426 43-70 (199)
433 KOG1464 COP9 signalosome, subu 44.4 2.9E+02 0.0063 26.3 20.5 283 238-531 69-409 (440)
434 PF15015 NYD-SP12_N: Spermatog 44.3 66 0.0014 32.6 6.3 50 506-555 234-283 (569)
435 COG3947 Response regulator con 43.6 86 0.0019 30.2 6.7 54 371-424 284-340 (361)
436 PF07163 Pex26: Pex26 protein; 43.5 2.7E+02 0.0058 26.8 9.8 86 302-389 89-181 (309)
437 KOG4077 Cytochrome c oxidase, 42.5 1.1E+02 0.0024 25.4 6.2 39 493-531 77-115 (149)
438 PF13762 MNE1: Mitochondrial s 42.1 2.2E+02 0.0048 24.4 10.6 50 396-445 78-128 (145)
439 PF10579 Rapsyn_N: Rapsyn N-te 41.9 83 0.0018 23.6 5.0 46 409-454 18-65 (80)
440 PF04097 Nic96: Nup93/Nic96; 41.2 5.3E+02 0.012 28.5 28.1 210 105-325 114-356 (613)
441 PF11848 DUF3368: Domain of un 41.0 93 0.002 20.6 4.9 32 144-175 13-44 (48)
442 cd08326 CARD_CASP9 Caspase act 40.9 69 0.0015 24.4 4.8 42 273-314 38-79 (84)
443 PF14863 Alkyl_sulf_dimr: Alky 40.3 1E+02 0.0022 26.3 6.1 68 484-554 57-124 (141)
444 KOG4279 Serine/threonine prote 40.2 1.6E+02 0.0034 32.4 8.7 21 512-532 299-319 (1226)
445 PRK10564 maltose regulon perip 40.1 57 0.0012 31.6 5.1 42 398-439 258-299 (303)
446 TIGR02270 conserved hypothetic 40.0 4.5E+02 0.0097 27.3 25.6 120 200-321 97-216 (410)
447 PF14689 SPOB_a: Sensor_kinase 40.0 69 0.0015 22.7 4.4 29 432-460 23-51 (62)
448 PF12862 Apc5: Anaphase-promot 39.9 1.8E+02 0.0038 22.6 7.9 20 441-460 50-69 (94)
449 cd02679 MIT_spastin MIT: domai 39.7 15 0.00032 27.6 1.0 59 482-562 3-67 (79)
450 PRK10564 maltose regulon perip 39.7 48 0.001 32.1 4.6 39 136-174 260-298 (303)
451 PF11663 Toxin_YhaV: Toxin wit 38.9 40 0.00087 28.1 3.4 34 143-178 105-138 (140)
452 PF02184 HAT: HAT (Half-A-TPR) 38.4 61 0.0013 19.5 3.1 26 515-541 2-27 (32)
453 PF14669 Asp_Glu_race_2: Putat 37.8 3.1E+02 0.0067 24.8 15.3 92 290-391 101-206 (233)
454 COG4976 Predicted methyltransf 37.7 46 0.001 30.7 3.9 51 511-561 6-57 (287)
455 PF07064 RIC1: RIC1; InterPro 37.4 3.8E+02 0.0082 25.7 14.5 151 41-197 85-249 (258)
456 PRK13342 recombination factor 37.3 4.9E+02 0.011 27.0 12.8 49 297-345 228-279 (413)
457 cd08332 CARD_CASP2 Caspase act 37.2 82 0.0018 24.4 4.8 55 93-147 25-79 (90)
458 PF14689 SPOB_a: Sensor_kinase 36.6 61 0.0013 23.0 3.7 30 396-425 22-51 (62)
459 PHA02537 M terminase endonucle 36.6 3.6E+02 0.0079 25.2 10.6 23 407-429 93-115 (230)
460 PF10516 SHNi-TPR: SHNi-TPR; 35.8 69 0.0015 20.1 3.3 27 535-561 2-29 (38)
461 COG5159 RPN6 26S proteasome re 35.7 4.1E+02 0.009 25.6 14.8 50 302-351 9-65 (421)
462 KOG2471 TPR repeat-containing 35.6 4.3E+02 0.0093 27.7 10.4 61 507-570 213-273 (696)
463 COG5159 RPN6 26S proteasome re 35.4 4.2E+02 0.0091 25.6 12.1 46 405-450 11-63 (421)
464 PRK14700 recombination factor 35.3 4.4E+02 0.0095 25.8 13.0 68 295-362 122-197 (300)
465 PF04090 RNA_pol_I_TF: RNA pol 34.7 2E+02 0.0043 26.2 7.4 88 502-590 43-132 (199)
466 COG5191 Uncharacterized conser 34.6 82 0.0018 30.5 5.1 75 466-540 105-182 (435)
467 KOG0508 Ankyrin repeat protein 34.0 1.7E+02 0.0036 30.3 7.4 65 567-637 332-400 (615)
468 COG2912 Uncharacterized conser 33.8 88 0.0019 29.9 5.2 55 505-559 186-240 (269)
469 PF11848 DUF3368: Domain of un 33.6 1.4E+02 0.0031 19.7 5.3 33 408-440 13-45 (48)
470 PF12968 DUF3856: Domain of Un 33.2 2.8E+02 0.006 22.9 7.9 19 471-489 58-76 (144)
471 COG0790 FOG: TPR repeat, SEL1 32.5 4.7E+02 0.01 25.3 20.3 50 280-329 92-146 (292)
472 PF11817 Foie-gras_1: Foie gra 32.0 1.2E+02 0.0027 28.7 6.2 55 471-525 181-243 (247)
473 cd00280 TRFH Telomeric Repeat 30.9 2.6E+02 0.0057 25.0 7.2 34 474-507 117-150 (200)
474 COG5108 RPO41 Mitochondrial DN 30.6 2.6E+02 0.0056 30.4 8.3 24 437-460 33-56 (1117)
475 PF10255 Paf67: RNA polymerase 30.4 3.1E+02 0.0068 28.2 8.9 57 267-323 124-191 (404)
476 PF09986 DUF2225: Uncharacteri 30.2 4.5E+02 0.0097 24.3 10.3 23 473-495 170-192 (214)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 29.8 3.3E+02 0.0071 22.6 7.8 60 167-228 64-124 (126)
478 KOG4642 Chaperone-dependent E3 29.8 4.8E+02 0.01 24.6 9.6 114 407-525 20-142 (284)
479 PRK14962 DNA polymerase III su 29.7 6.7E+02 0.014 26.6 11.6 125 251-375 198-328 (472)
480 COG5108 RPO41 Mitochondrial DN 28.6 2.1E+02 0.0045 31.1 7.3 69 76-144 33-114 (1117)
481 PRK11639 zinc uptake transcrip 28.4 2.1E+02 0.0046 25.3 6.6 38 410-447 38-75 (169)
482 COG0735 Fur Fe2+/Zn2+ uptake r 27.8 2.7E+02 0.006 23.8 7.0 48 401-448 24-71 (145)
483 KOG0991 Replication factor C, 27.6 5.2E+02 0.011 24.3 12.1 55 386-442 228-282 (333)
484 cd08332 CARD_CASP2 Caspase act 27.5 1.6E+02 0.0034 22.8 4.9 35 277-311 46-80 (90)
485 PF04781 DUF627: Protein of un 26.5 1.8E+02 0.0039 23.5 5.1 38 518-555 62-99 (111)
486 KOG2297 Predicted translation 26.5 5E+02 0.011 25.4 8.7 66 346-417 270-341 (412)
487 KOG0292 Vesicle coat complex C 25.6 1.1E+03 0.023 27.2 12.9 131 373-528 650-781 (1202)
488 KOG0376 Serine-threonine phosp 25.5 1.4E+02 0.003 31.0 5.3 102 373-479 11-116 (476)
489 PF10155 DUF2363: Uncharacteri 25.0 4.1E+02 0.0088 22.2 11.4 111 118-230 5-125 (126)
490 PF10475 DUF2450: Protein of u 24.9 3.7E+02 0.008 26.3 8.2 55 105-161 101-155 (291)
491 PF09454 Vps23_core: Vps23 cor 24.8 2.1E+02 0.0044 20.6 4.7 49 395-444 6-54 (65)
492 KOG2908 26S proteasome regulat 24.2 7.3E+02 0.016 24.8 9.7 52 442-493 85-140 (380)
493 PF11817 Foie-gras_1: Foie gra 23.8 2.3E+02 0.005 26.9 6.4 20 404-423 185-204 (247)
494 PF04762 IKI3: IKI3 family; I 23.7 6.2E+02 0.013 29.6 10.8 123 411-560 792-927 (928)
495 KOG4814 Uncharacterized conser 23.5 5.3E+02 0.012 28.1 9.1 56 505-560 399-454 (872)
496 KOG2034 Vacuolar sorting prote 23.4 1.1E+03 0.025 26.8 23.0 300 79-392 366-687 (911)
497 PF02607 B12-binding_2: B12 bi 23.3 1.3E+02 0.0029 22.1 3.9 38 408-445 12-49 (79)
498 PF10255 Paf67: RNA polymerase 23.3 3.9E+02 0.0084 27.5 8.0 86 75-160 79-191 (404)
499 smart00777 Mad3_BUB1_I Mad3/BU 23.1 4.4E+02 0.0096 21.9 7.3 41 416-456 82-123 (125)
500 KOG2422 Uncharacterized conser 23.0 9.8E+02 0.021 25.9 16.1 91 404-494 349-445 (665)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.4e-107 Score=915.17 Aligned_cols=621 Identities=35% Similarity=0.610 Sum_probs=604.5
Q ss_pred CCCCcchHHHHHHHHHhCCCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccC--CCChhhHHHHHH
Q 006343 2 ADRTSASYNAMITALINNNCSIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR--WRDSVCSNALIS 79 (649)
Q Consensus 2 ~~~~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~ 79 (649)
+.++++++|+||++|+++ |++++|+++|++|++||+++||++|++|++.|++++|+++|++|... .||.+||+.+++
T Consensus 117 ~~~~~~~~n~li~~~~~~-g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRF-GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCchHHHHHHHHHHhC-CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 467889999999999999 99999999999999999999999999999999999999999999865 899999999999
Q ss_pred HHHccCChHHHHHHHHhcc----cCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 006343 80 GYLKVGRCEEAARIFEAMV----EKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDL 155 (649)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 155 (649)
+|++.+++..+.+++..++ .+|+.++++|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999886 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 006343 156 FLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAV 235 (649)
Q Consensus 156 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 235 (649)
|.+|.+.|+.||..||+.+|.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC---------------------------------------CCChhHHHHHHHHHH
Q 006343 236 SWNSLISGYVHNGEIEEAYRLFERMP---------------------------------------GKDFVSWTTMITGFS 276 (649)
Q Consensus 236 ~~~~li~~~~~~g~~~~A~~~~~~m~---------------------------------------~~~~~~~~~li~~~~ 276 (649)
+|++||.+|++.|++++|+++|++|. .++..++++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999985 245677899999999
Q ss_pred cCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 006343 277 SKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAH 356 (649)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 356 (649)
++|++++|.++|++|.++|+++|+.+|.+|+++|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.++++|..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred HHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006343 357 VVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
+.+.|+.++..++++|+++|+|+|++++|.++|+.+ ++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNL 516 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 516 (649)
.++.+|++.|++++|.++|+.|.+.+|+.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+.+|+.||+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999779999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHH
Q 006343 517 DLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEI 596 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i 596 (649)
+.|+.+++++++++|++++.|+.|+|+|+..|+|++|.++|+.|+++|++|.|||||||++|++|.|++||++||+.++|
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCC-CCCCcccccCCccc
Q 006343 597 EVTLQTISKGTKEFDW-PKHDWSLLGLERDW 626 (649)
Q Consensus 597 ~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~ 626 (649)
|.+|+.|..+|++.|| |+++.++++ +||+
T Consensus 754 ~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~ 783 (857)
T PLN03077 754 NTVLEGFYEKMKASGLAGSESSSMDE-IEVS 783 (857)
T ss_pred HHHHHHHHHHHHhCCcCCCcchhccc-cHHH
Confidence 9999999999999999 999998854 5543
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-90 Score=757.89 Aligned_cols=532 Identities=31% Similarity=0.543 Sum_probs=509.7
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHhhcccC---CCChhhHHHHHHHHHccCChHHHHHHHHhcc----cCChhHHHH
Q 006343 35 MRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR---WRDSVCSNALISGYLKVGRCEEAARIFEAMV----EKDVVAWGS 107 (649)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 107 (649)
+++.++|+++|.+|.+.|++++|+++|+.|... .|+..+|+.++.+|++.++++.|.++|..+. .+|+.+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 346779999999999999999999999999754 6899999999999999999999999999986 489999999
Q ss_pred HHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 006343 108 MVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREG 187 (649)
Q Consensus 108 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 187 (649)
++++|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH
Q 006343 188 VQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVS 267 (649)
Q Consensus 188 ~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 267 (649)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~---------------------- 301 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA---------------------- 301 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999888777666655555554
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 006343 268 WTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATL 347 (649)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 347 (649)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus 302 ----------------------------------------~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 302 ----------------------------------------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred ----------------------------------------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 4555566777788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006343 348 NQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEG 427 (649)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 427 (649)
+.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHH
Q 006343 428 LVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALL 507 (649)
Q Consensus 428 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 507 (649)
+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|++++|.+++++|++.|+..+|++|+
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll 501 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCC
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAGR 587 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d 587 (649)
.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|++|.||||||++++++|.|.+||
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcCC-CCCCcccccCCccccc
Q 006343 588 KSCLDLKEIEVTLQTISKGTKEFDW-PKHDWSLLGLERDWSY 628 (649)
Q Consensus 588 ~~hp~~~~i~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 628 (649)
++||+.++||.+|+.|..+|++.|| |++++++|+++||+..
T Consensus 582 ~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~ 623 (697)
T PLN03081 582 RLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEK 623 (697)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHH
Confidence 9999999999999999999999999 9999999999987643
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-74 Score=651.54 Aligned_cols=529 Identities=28% Similarity=0.431 Sum_probs=503.2
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHhhcccC--CCChhhHHHHHHHHHccCChHHHHHHHHhcc----cCChhHHHHH
Q 006343 35 MRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR--WRDSVCSNALISGYLKVGRCEEAARIFEAMV----EKDVVAWGSM 108 (649)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l 108 (649)
.++..++|.++.+|++.|++++|+.+|+.|.+. +|+..+|..++.+|.+.+.++.|.+++..+. .++..++|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 456778999999999999999999999999875 7899999999999999999999999999875 3678899999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 006343 109 VDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGV 188 (649)
Q Consensus 109 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 188 (649)
+++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC-------
Q 006343 189 QVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP------- 261 (649)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 261 (649)
++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --------------------------------CCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcC
Q 006343 262 --------------------------------GKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNN 309 (649)
Q Consensus 262 --------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 309 (649)
.+|..+|++|+.+|+++|++++|.++|++|.++|.++||.+|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 357788999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 006343 310 EQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIF 389 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (649)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.++..++++|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChh
Q 006343 390 TNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPE 469 (649)
Q Consensus 390 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 469 (649)
++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|.++.+.+++..+.+ .|+.|+..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccce
Confidence 999999999999999999999999999999999986 5999999999999999999999999999999988 69999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCCchHHHHHHHHHhc
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME--LEPDSATPYVVLSDLYSVI 547 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~ 547 (649)
++++|+++|+++|++++|.++|+.+ +||..+|++++.+|..+|+.++|.++++++.+ ..| |..+|..+...|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc
Confidence 9999999999999999999999988 78999999999999999999999999998887 667 777888888899999
Q ss_pred CCchHHHHHHHHHh-hCCCccC
Q 006343 548 GKKRDGNRVRMKKK-LKRIRKS 568 (649)
Q Consensus 548 g~~~~a~~~~~~~~-~~~~~~~ 568 (649)
|++++|.++++.|+ +.|+.+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCc
Confidence 99999999888887 6676653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-64 Score=557.50 Aligned_cols=564 Identities=16% Similarity=0.217 Sum_probs=491.1
Q ss_pred HHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhcccCC-----hhHHHHHHHHHHhCCChhHHHHHhccCCCC
Q 006343 57 AEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAMVEKD-----VVAWGSMVDGYCKKGRVIEAREIFDKMPEK 131 (649)
Q Consensus 57 A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 131 (649)
+....+......++...|..++..|++.|++++|.++|+.|..++ ..+++.++..|.+.|.+++|.++|+.|+.|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~p 435 (1060)
T PLN03218 356 SLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP 435 (1060)
T ss_pred hHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 444445554446778889999999999999999999999997654 456777888999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006343 132 NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIIT 211 (649)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 211 (649)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||+
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhHHHHHHHHHHcCCCh
Q 006343 212 MYGRLGFMDEANKVFSMMS----KRDAVSWNSLISGYVHNGEIEEAYRLFERMP------GKDFVSWTTMITGFSSKGNL 281 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~ 281 (649)
+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|. .||..+|++|+.+|+++|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999996 3899999999999999999999999999995 47899999999999999999
Q ss_pred HHHHHHHhhCCC----CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 006343 282 EKSIELFNMMPE----KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHV 357 (649)
Q Consensus 282 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 357 (649)
++|.++|+.|.+ ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999985 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006343 358 VKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI 433 (649)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 433 (649)
.+.|+.|+..+|++|+.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999995 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c-------------------CCHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR----A-------------------GSLAEAIDL 490 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~-------------------g~~~~A~~~ 490 (649)
||+.++.+|.+.|++++|.++|+.|.+ .|+.||..+|+++++++.+ + +..++|..+
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 999999999999999999999999988 6999999999999987532 2 234689999
Q ss_pred HHhCC---CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHhhCCC
Q 006343 491 INSMT---FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME-LEPDSATPYVVLSDLYSVIGKK-RDGNRVRMKKKLKRI 565 (649)
Q Consensus 491 ~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 565 (649)
|++|. +.||..+|+.++.++...++.+.+...++.+.. -.+.+..+|..|...+ |++ ++|..+.+.|...|+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCC
Confidence 99997 789999999999776678888888888876543 3344778888888876 444 589999999999999
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhhcCC-CCCCcccccCCcccccc
Q 006343 566 RKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKEFDW-PKHDWSLLGLERDWSYT 629 (649)
Q Consensus 566 ~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 629 (649)
.+.....-...-=.+|.|..|- ----+...|..|......... |.....+|. ++.+.++
T Consensus 912 ~p~~~~~~~~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~~ 971 (1060)
T PLN03218 912 VPSVSFKKSPIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIYT 971 (1060)
T ss_pred CCCcccccCceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceeec
Confidence 7554311112222333443332 112244556666666544334 876665665 5555444
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-63 Score=549.44 Aligned_cols=492 Identities=16% Similarity=0.248 Sum_probs=304.7
Q ss_pred CCcchHHHHHHHHHhCCCChHHHHHHHhhCCCCCcch-----HHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHH
Q 006343 4 RTSASYNAMITALINNNCSIYEAFEIFATMPMRNAVS-----YAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALI 78 (649)
Q Consensus 4 ~~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll 78 (649)
++...|..+++.+.+. |++.+|+++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. |+..+|+.++
T Consensus 368 ~~~~~~~~~y~~l~r~-G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRD-GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHC-cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHH
Confidence 4455666666777776 77777777777776555443 33445556667777777777777665 6777777777
Q ss_pred HHHHccCChHHHHHHHHhcc----cCChhHHHHHHHHHHhCCChhHHHHHhccCC----CCCcccHHHHHHHHHhcCChh
Q 006343 79 SGYLKVGRCEEAARIFEAMV----EKDVVAWGSMVDGYCKKGRVIEAREIFDKMP----EKNVVAWTAMVDGYMKVDCFE 150 (649)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~ 150 (649)
.+|++.|+++.|.++|+.|. .+|..+|+.||.+|+++|+++.|.++|++|. .||.++|++||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 77777777777777777664 3566677777777777777777777777766 366677777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 006343 151 DGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSR--FGFDYDIILGNSIITMYGRLGFMDEANKVFSM 228 (649)
Q Consensus 151 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 228 (649)
+|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777755 45666777777777777777777777777766
Q ss_pred CCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHH
Q 006343 229 MSK----RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIIS 304 (649)
Q Consensus 229 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 304 (649)
|.+ ++..+|+++|.+|++.|++++|.++|++|...+ ..||..+|+.+|.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---------------------------v~PD~~TynsLI~ 657 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------------------VKPDEVFFSALVD 657 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHH
Confidence 654 345666666666666666666666666654210 0234445555555
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006343 305 GFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVD 384 (649)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (649)
+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|..|.+.|+.||..+|++|+.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----------------
Q 006343 385 AYRIFTNID----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNH---------------- 444 (649)
Q Consensus 385 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---------------- 444 (649)
|.++|++|. .||..+|++++.+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 555555553 345555555555555555555555555555555555555555555543321
Q ss_pred -------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcC
Q 006343 445 -------VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT---FEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 445 -------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~~ll~~~~~~g 514 (649)
.+..++|..+|++|.+ .|+.||..+|+.++..+.+.+....+..+++.|. ..|+..+|++|+.+|...
T Consensus 818 ~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~- 895 (1060)
T PLN03218 818 SGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY- 895 (1060)
T ss_pred ccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-
Confidence 1223567777777766 4677777777777766666677777777776654 345566777777766322
Q ss_pred ChhHHHHHHHHHhc
Q 006343 515 NLDLAKLAAQHLME 528 (649)
Q Consensus 515 ~~~~a~~~~~~~~~ 528 (649)
.++|...++.+.+
T Consensus 896 -~~~A~~l~~em~~ 908 (1060)
T PLN03218 896 -DPRAFSLLEEAAS 908 (1060)
T ss_pred -hHHHHHHHHHHHH
Confidence 2467777777666
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-59 Score=512.82 Aligned_cols=455 Identities=19% Similarity=0.297 Sum_probs=430.5
Q ss_pred CCcchHHHHHHHHHhCCCChHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCChhhHHHHHhhcccC--CCChhhHHH
Q 006343 4 RTSASYNAMITALINNNCSIYEAFEIFATMP-----MRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR--WRDSVCSNA 76 (649)
Q Consensus 4 ~~~~~~~~li~~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ 76 (649)
.+..+|+++|..|.+. |++.+|..+|+.|. .+|..+|++++.+|.+.++++.|..++..|.+. .||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566899999999999 99999999999985 367889999999999999999999999999875 789999999
Q ss_pred HHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCC----CCcccHHHHHHHHHhcCChhHH
Q 006343 77 LISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPE----KNVVAWTAMVDGYMKVDCFEDG 152 (649)
Q Consensus 77 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A 152 (649)
++.+|++.|+++.|.++|++|.++|.++||+++.+|++.|++++|.++|++|.+ ||..+|+.++.++.+.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 8899999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 006343 153 FDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMS-- 230 (649)
Q Consensus 153 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-- 230 (649)
.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. ++|..+||+|+.+|++.|+.++|.++|++|.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999885 4689999999999999999999999999995
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHH
Q 006343 231 --KRDAVSWNSLISGYVHNGEIEEAYRLFERMP----GKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIIS 304 (649)
Q Consensus 231 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 304 (649)
.||..||++++.+|++.|++++|.+++..|. .+|..++++|+++|+++|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5899999999999999999999999999986 5788999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-hCCCCcccHHHHHHHHHHhcCCHH
Q 006343 305 GFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVK-MNMESDVSIQNSLVSLYSKCGNVV 383 (649)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 383 (649)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 006343 384 DAYRIFTNID-ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTL 461 (649)
Q Consensus 384 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 461 (649)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~- 556 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR- 556 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 9999999997 68999999999999999999999999999875 4554 67899999999999999999999999987
Q ss_pred cCCCC
Q 006343 462 YNIEP 466 (649)
Q Consensus 462 ~~~~p 466 (649)
.|+.+
T Consensus 557 ~g~~k 561 (697)
T PLN03081 557 KGLSM 561 (697)
T ss_pred cCCcc
Confidence 46643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-33 Score=326.43 Aligned_cols=535 Identities=13% Similarity=0.088 Sum_probs=271.0
Q ss_pred HHHHHhCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChH
Q 006343 13 ITALINNNCSIYEAFEIFATMPM---RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCE 88 (649)
Q Consensus 13 i~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~ 88 (649)
...+... |++++|...|+.... .+...+..+...+...|++++|+..++.+... +.+...+..+...+.+.|+++
T Consensus 302 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 302 GASEYQL-GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 3344555 666666666655432 23334455555555666666666666555444 333445555555555666666
Q ss_pred HHHHHHHhccc---CChhHHHHHHHHHHhCCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006343 89 EAARIFEAMVE---KDVVAWGSMVDGYCKKGRVIEAREIFDKMPEK---NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRG 162 (649)
Q Consensus 89 ~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 162 (649)
+|...|+.+.+ .+...+..+...+...|++++|.+.|+++.+. +...+..++..+.+.|++++|..+++.+...
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 66666655542 23344455555555555665555555554431 2223444555555555555555555555442
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHH
Q 006343 163 GMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNS 239 (649)
Q Consensus 163 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 239 (649)
.+++..++..+...+...|+++.|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+.+.. .+..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 23344455555555555555555555555555432 22333444455555555555555555555432 23445555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHH
Q 006343 240 LISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYE 313 (649)
Q Consensus 240 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 313 (649)
+...+.+.|+.++|..+|+++.. .+...+..++..|.+.|++++|..+++.+.+ .+...|..++.+|.+.|+++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555432 2233444555555555555555555555432 23445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006343 314 EAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID 393 (649)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (649)
+|+..|+++.+.. +.+...+..+..++...|+.++|..++..+.+..+. +...+..++..+.+.|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555432 223334444555555555555555555555544322 34445555555555555555555555544
Q ss_pred ---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 006343 394 ---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEH 470 (649)
Q Consensus 394 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 470 (649)
+.+...+..+...+...|++++|+..|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 223344455555555555555555555555543 233344444555555555555555555555441 2223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 471 YACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
+..++.+|.+.|+.++|.+.++++. .++++.+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 5555555555555555555555443 22334445555555555555 44555555555555555555555555555555
Q ss_pred CchHHHHHH
Q 006343 549 KKRDGNRVR 557 (649)
Q Consensus 549 ~~~~a~~~~ 557 (649)
++++|.++.
T Consensus 852 ~~~~A~~~~ 860 (899)
T TIGR02917 852 EADRALPLL 860 (899)
T ss_pred CHHHHHHHH
Confidence 555555533
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.2e-33 Score=320.07 Aligned_cols=546 Identities=11% Similarity=0.055 Sum_probs=333.2
Q ss_pred cchHHHHHHHHHhCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHH
Q 006343 6 SASYNAMITALINNNCSIYEAFEIFATMPM---RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGY 81 (649)
Q Consensus 6 ~~~~~~li~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~ 81 (649)
...+..+...+.+. |++++|...+..+.. .+...|..+...|.+.|++++|..+|+++.+. +.+...+..+...+
T Consensus 329 ~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 329 HQARRLLASIQLRL-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407 (899)
T ss_pred hHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34455555666666 666666666665542 23445666666666666666666666666554 33344455555666
Q ss_pred HccCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHH
Q 006343 82 LKVGRCEEAARIFEAMVEK---DVVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDL 155 (649)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 155 (649)
...|++++|...++.+.+. .......++..|.+.|++++|.++++++.. ++..+|+.+...+...|++++|...
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666666665432 233445556666666666666666666543 3445666666666666666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 006343 156 FLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---R 232 (649)
Q Consensus 156 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~ 232 (649)
|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666532 2233445555556666666666666666666544 23455666666666666666666666666532 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 006343 233 DAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGF 306 (649)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 306 (649)
+...+..++..|...|++++|..+++++.. .+..+|..+...|.+.|++++|...|+.+.+ .+...|..++..+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 444556666666666666666666666542 3445666666666666666666666666543 2445566666666
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 006343 307 VNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAY 386 (649)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (649)
.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|..++..+.+..+. +...+..+...|.+.|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666666532 233455666666666666666666666666655432 4555566666666666666666
Q ss_pred HHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCC
Q 006343 387 RIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNI 464 (649)
Q Consensus 387 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 464 (649)
+.|+.+. .|+..++..++..+...|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+.+.+. -
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 800 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--A 800 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--C
Confidence 6666654 2444555566666666666666666666666642 344555666666666666666676666666652 2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 465 EPGPEHYACMVDILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 465 ~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
++++..+..++.++...|+ .+|++.++++. .. .++..+..+...+...|++++|...++++++.+|.++.++..++.
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 3345666666666666666 66666666543 22 234455666666666666667777777766666666666666666
Q ss_pred HHHhcCCchHHHHHHHHH
Q 006343 543 LYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~ 560 (649)
+|...|++++|.++.+.|
T Consensus 880 ~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 880 ALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666667766666654443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.4e-24 Score=251.57 Aligned_cols=549 Identities=10% Similarity=0.007 Sum_probs=386.2
Q ss_pred CCcchHHHHHHHHHhCCCChHHHHHHHhhCCCCCc---chH----------------HHHHHHHHhcCChhhHHHHHhhc
Q 006343 4 RTSASYNAMITALINNNCSIYEAFEIFATMPMRNA---VSY----------------AAMITGFVRRGMFYEAEELYVNM 64 (649)
Q Consensus 4 ~~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~~---~~~----------------~~li~~~~~~g~~~~A~~~~~~m 64 (649)
.|+.++..++..+.+. |+.++|.+.+++..+.++ ..+ -.+...+...|++++|+..|+.+
T Consensus 60 ~~p~~~~~~~~~~l~~-g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQ-GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3456667777777787 888888888887653222 111 22334577788888888888888
Q ss_pred ccC-CCChhh-HHHHHHHHHccCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCc------
Q 006343 65 PAR-WRDSVC-SNALISGYLKVGRCEEAARIFEAMVEK---DVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNV------ 133 (649)
Q Consensus 65 ~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------ 133 (649)
.+. +|+... ...........|+.++|+..++++.+. ++..+..+...+...|+.++|+..|+++.....
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 766 333221 111112223457888888888887643 445677778888888888888888877632110
Q ss_pred cc-----------------HH----------------------------------HHHHHHHhcCChhHHHHHHHHHHhC
Q 006343 134 VA-----------------WT----------------------------------AMVDGYMKVDCFEDGFDLFLSMRRG 162 (649)
Q Consensus 134 ~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~ 162 (649)
.. +. .....+...|++++|+..|++..+.
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 00 1123445667777888887777764
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHHhhC
Q 006343 163 GMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYD-IILG------------NSIITMYGRLGFMDEANKVFSMM 229 (649)
Q Consensus 163 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~l~~~y~~~g~~~~A~~~~~~~ 229 (649)
. +-+...+..+..++.+.|++++|...+..+++...... ...+ ..+...+.+.|++++|...|++.
T Consensus 299 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 N-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 22456666677777777888888887777776543221 1111 12234566777888888777776
Q ss_pred CC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCCCC--------
Q 006343 230 SK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPEKD-------- 295 (649)
Q Consensus 230 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 295 (649)
.. .+...+..+...+...|++++|++.|++..+ .+...+..+...|. .++.++|...++.+....
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 54 3455666777777788888888888877653 23345555666654 346777777777665321
Q ss_pred ----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHH
Q 006343 296 ----DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQN 370 (649)
Q Consensus 296 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (649)
...+..+...+...|++++|++.|++.++. .|+ ...+..+...+...|+.++|...++.+.+..+. ++..+.
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~ 533 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVY 533 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 123455667788899999999999999885 454 456677888899999999999999988876543 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC----ChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDER----NIV---------SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLS 437 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 437 (649)
.+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|+.+++. .+++...+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~ 608 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHH
Confidence 5666677889999999999987632 111 123456678889999999999872 2455566777
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHL 514 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g 514 (649)
+...+...|+.++|+..|+...+ ..| +...+..++.+|...|++++|++.++..+ ..|+ ...+..+..++...|
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 88889999999999999999987 456 48889999999999999999999999876 4444 567777888888999
Q ss_pred ChhHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCCchHHHH-HHHHHhhCCCc
Q 006343 515 NLDLAKLAAQHLMELEPDSAT------PYVVLSDLYSVIGKKRDGNR-VRMKKKLKRIR 566 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~ 566 (649)
+.++|...++++++..|+++. .+..++.++...|++++|.. +++.|...|+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 999999999999998876553 56667999999999999999 77777766654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.7e-24 Score=250.75 Aligned_cols=540 Identities=13% Similarity=0.071 Sum_probs=332.7
Q ss_pred HHHHHHhCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhH--------------
Q 006343 12 MITALINNNCSIYEAFEIFATMP---MRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCS-------------- 74 (649)
Q Consensus 12 li~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------------- 74 (649)
.+..+... ++.+.|++.++++. ..|+..+..++..+.+.|+.++|.+.+++..+..|+...+
T Consensus 34 q~~~~~~~-~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEAT-HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhh-CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 44455666 89999999998764 3467788889999999999999999999998874544332
Q ss_pred ---HHHHHHHHccCChHHHHHHHHhcccCChhHHH----HHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHH
Q 006343 75 ---NALISGYLKVGRCEEAARIFEAMVEKDVVAWG----SMVDGYCKKGRVIEAREIFDKMPE--K-NVVAWTAMVDGYM 144 (649)
Q Consensus 75 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 144 (649)
..+...+.+.|++++|.+.++.+.+.++.... .........|+.++|++.|+++.+ | +...+..+...+.
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22334678899999999999998754322211 112222345999999999999886 3 4457888899999
Q ss_pred hcCChhHHHHHHHHHHhCCCC----------------CChh---hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhh
Q 006343 145 KVDCFEDGFDLFLSMRRGGMA----------------FNSI---TLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIIL 205 (649)
Q Consensus 145 ~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 205 (649)
..|++++|+..|+++...... ++.. .+...+..+........+...+....+....|...
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~- 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR- 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-
Confidence 999999999999998653210 0000 01111111111111222333333222222122211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----hHH---------
Q 006343 206 GNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDF-----VSW--------- 268 (649)
Q Consensus 206 ~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~--------- 268 (649)
...+...+...|++++|+..|++..+ .+...+..+...|.+.|++++|+..|++..+.++ ..|
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11223444555666666655555432 2444555555555666666666655555442111 011
Q ss_pred ---HHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHH------
Q 006343 269 ---TTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLTLS------ 335 (649)
Q Consensus 269 ---~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~------ 335 (649)
......+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|+++++. .|+ ...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 1112344455566666665555543 13344555555555566666666666555543 222 22222
Q ss_pred ------------------------------------HHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006343 336 ------------------------------------SVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC 379 (649)
Q Consensus 336 ------------------------------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (649)
.+...+...|+.++|...++.+++..+. ++.++..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 2233344556666666666666665543 445555666666666
Q ss_pred CCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhhccCc
Q 006343 380 GNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI---------TFLSVLSACNHVGL 447 (649)
Q Consensus 380 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~ 447 (649)
|++++|...|+++. +.+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 77776666666653 2234444444444555666666666666543322122211 12234456677788
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 006343 448 VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQH 525 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 525 (649)
.++|..+++ . .+++...+..+.+.+.+.|+.++|++.+++.. ..| +...+..++..+...|+.++|+..+++
T Consensus 589 ~~eA~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888887765 1 24456777889999999999999999998865 344 477888899999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 526 LMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+++..|+++..+..++.++...|++++|.++.+.+..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999996655544
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=8.9e-22 Score=217.94 Aligned_cols=525 Identities=10% Similarity=0.038 Sum_probs=355.4
Q ss_pred HhCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHH
Q 006343 17 INNNCSIYEAFEIFATMPM---RNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARI 93 (649)
Q Consensus 17 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 93 (649)
... |++++|...|+...+ .+..++..+...|...|++++|+..+++..+..|+...|..++..+ ++..+|..+
T Consensus 55 ~~~-Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKN-NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 344 899999999987653 3455678888999999999999999999988766555554444333 888899999
Q ss_pred HHhcccC---ChhHHHHHHHH--------HHhCCChhHHHHHhccCCCCC--ccc-HHHHHHHHHhcCChhHHHHHHHHH
Q 006343 94 FEAMVEK---DVVAWGSMVDG--------YCKKGRVIEAREIFDKMPEKN--VVA-WTAMVDGYMKVDCFEDGFDLFLSM 159 (649)
Q Consensus 94 ~~~~~~~---~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~~m 159 (649)
++++... +..++..+... |.+.+....|++ .+...++ ... .-.+...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9998742 34455555554 777766677776 3333343 333 334478999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Q 006343 160 RRGGMAFNSITLTILFEACGR-FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK-----RD 233 (649)
Q Consensus 160 ~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~ 233 (649)
.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++.+++. ++
T Consensus 209 ~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 209 RQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9876433 3334445556665 355 666666432 3446788889999999999999999999988863 11
Q ss_pred hhhH------------------------------HHHHHHHHhcCCHHHHHHHHhhCCC---------------------
Q 006343 234 AVSW------------------------------NSLISGYVHNGEIEEAYRLFERMPG--------------------- 262 (649)
Q Consensus 234 ~~~~------------------------------~~li~~~~~~g~~~~A~~~~~~m~~--------------------- 262 (649)
..+| -.++..+.+++.++-+.++...-..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111 1125556777777766666432110
Q ss_pred ----------C-ChhHHHHHHHHHHcCCChHHHHHHHhhCCC-C-----ChhhHHHHHHHHhcCCC---HHHHHHH----
Q 006343 263 ----------K-DFVSWTTMITGFSSKGNLEKSIELFNMMPE-K-----DDVTWTAIISGFVNNEQ---YEEAFRW---- 318 (649)
Q Consensus 263 ----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---- 318 (649)
| +....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++.+
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 1 122222233345567888888888887655 1 22234466666766655 3344333
Q ss_pred ------------------HHHHHH-CCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006343 319 ------------------FIEMLR-KDVRP---NQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLY 376 (649)
Q Consensus 319 ------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (649)
+..... .+..| +...+..+..++.. +..++|...+.......+ +......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence 111111 11223 33444444444444 777778887776666543 333333344455
Q ss_pred HhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHH
Q 006343 377 SKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 453 (649)
...|++++|...|+++. .++...+..+...+.+.|+.++|...+++.++.. |+. ..+..+...+...|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 68899999999888765 2445567777778888899999999998888753 443 333334445556689999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 454 YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
.++...+ +.|+...|..+..++.+.|+.++|...+++.. ..|+ ...+..+..++...|+.++|+..++++++++|
T Consensus 598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9888876 56788888888888999999999999888765 4454 56777788888888999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 532 DSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
+++..+..++.+|...|+.++|.. +++.++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999888 444443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=9e-21 Score=210.02 Aligned_cols=531 Identities=10% Similarity=0.018 Sum_probs=394.4
Q ss_pred CcchHHHHHHHHHhCCCChHHHHHHHhhCCCCCc--chHHHHHHHHHhcCChhhHHHHHhhcccCCC-ChhhHHHHHHH-
Q 006343 5 TSASYNAMITALINNNCSIYEAFEIFATMPMRNA--VSYAAMITGFVRRGMFYEAEELYVNMPARWR-DSVCSNALISG- 80 (649)
Q Consensus 5 ~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~- 80 (649)
+..++..|...|.+. |+.++|+..+++....++ ..+..++..+ +++++|..+|+++....| +..++..+...
T Consensus 77 n~~~~~~LA~~yl~~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~ 152 (987)
T PRK09782 77 NIPLTLYLAEAYRHF-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSE 152 (987)
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHh
Confidence 367889999999999 999999999998765443 2333333323 999999999999988744 45555555555
Q ss_pred -------HHccCChHHHHHHHHhcccC--ChhHHHHH-HHHHHhCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhc-
Q 006343 81 -------YLKVGRCEEAARIFEAMVEK--DVVAWGSM-VDGYCKKGRVIEAREIFDKMPEKNV---VAWTAMVDGYMKV- 146 (649)
Q Consensus 81 -------~~~~~~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~- 146 (649)
|.+.+...+++. .....+ ++.+.... ..+|.+.|+++.|++++.++.+.++ .-+..|...|.+.
T Consensus 153 ~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 666655555555 222333 35544444 8999999999999999999986332 3466677788873
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CChhhH--H----------------
Q 006343 147 DCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFD-YDIILG--N---------------- 207 (649)
Q Consensus 147 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~--~---------------- 207 (649)
++ +++..+++. .++-+......+...+.+.|+.+.|.+++..+...-.. |....+ +
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 66 888888553 34457788889999999999999999999887654322 433333 1
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHhhCCC--------------------------------CChhhHHHHHHH
Q 006343 208 ------------SIITMYGRLGFMDEANKVFSMMSK--------------------------------RDAVSWNSLISG 243 (649)
Q Consensus 208 ------------~l~~~y~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~li~~ 243 (649)
.++..+.+.++++.+.++.+--+. .+....-.+.-.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 236667778888877766442211 011222223334
Q ss_pred HHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHcCCCh---HHHHHH-------------------------Hh
Q 006343 244 YVHNGEIEEAYRLFERMPGK------DFVSWTTMITGFSSKGNL---EKSIEL-------------------------FN 289 (649)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~---~~A~~~-------------------------~~ 289 (649)
..+.|+.++|..+|+..... +.....-++..|.+.+.+ .++..+ +.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 57789999999999988651 223445778888887762 333222 11
Q ss_pred hCCC---C--ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCC
Q 006343 290 MMPE---K--DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMES 364 (649)
Q Consensus 290 ~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (649)
.... + +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+.... |
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--M 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--C
Confidence 1111 2 55678888888877 8999999988888774 5776655555566678999999999999876653 3
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYN---SMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
+...+..+...+.+.|+.++|...|+.....++..++ .+.......|++++|+..|++..+. .|+...+..+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~ 618 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI 618 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3445667788899999999999999987754333333 3333444569999999999999985 5778888999999
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~ 518 (649)
+.+.|++++|...|+.... +.|+ ...+..+..++...|++++|++.+++.. ..| ++..+..+..++...|+++.
T Consensus 619 l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987 5675 8888999999999999999999999865 445 47789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
|+..++++++++|+++......+++.....+++.+.+-
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999883
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.7e-22 Score=195.38 Aligned_cols=439 Identities=14% Similarity=0.146 Sum_probs=308.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcccCChh-H--HHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcC
Q 006343 74 SNALISGYLKVGRCEEAARIFEAMVEKDVV-A--WGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVD 147 (649)
Q Consensus 74 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~--~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 147 (649)
...|..-..+.|++.+|++.-..+-..|+. + .-.+-..+.+..+.+....--....+ .-..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344555566778888887766555433322 2 22233456666666654433322222 23457888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHH
Q 006343 148 CFEDGFDLFLSMRRGGMAF-NSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDII-LGNSIITMYGRLGFMDEANKV 225 (649)
Q Consensus 148 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~y~~~g~~~~A~~~ 225 (649)
++++|+.+++.|++. +| ....|..+..++...|+.+.|.+.+...++.. |+.. +.+-+-......|++.+|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 899999998888874 44 35677788888888888888888888877754 4332 223344445556777777776
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHH
Q 006343 226 FSMMSK--R-DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAI 302 (649)
Q Consensus 226 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 302 (649)
+.+..+ | -.+.|+.|...+-..|+...|+.-|++....|+. -..+|-.|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~----------------------------f~dAYiNL 258 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN----------------------------FLDAYINL 258 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc----------------------------chHHHhhH
Confidence 665543 2 2356666666666666666666666665543331 11234444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006343 303 ISGFVNNEQYEEAFRWFIEMLRKDVRPNQ-LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGN 381 (649)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (649)
...|...+.+++|+..|.+.... +|+. ..+..+...|...|.++.|+..+++.++..+. -+..|+.|..++...|+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccc
Confidence 44555555555555555555442 3432 24444444455555555555555555554433 35567778888888888
Q ss_pred HHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHH
Q 006343 382 VVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKS 457 (649)
Q Consensus 382 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 457 (649)
+.+|...+++.. .....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..++.
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 888888887765 34456788888999999999999999998887 4566 56788899999999999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 458 MKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 458 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
..+ |.|+ ...|+.|...|...|+.++|.+.+.+.. +.|. +...+.|...++..|++.+|+..++.+++++|+.+
T Consensus 414 alr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 414 ALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 886 8998 8899999999999999999999998865 6676 67899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchH
Q 006343 535 TPYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~ 552 (649)
.+|-+|+....-..+|.+
T Consensus 491 dA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhhHHHHHHHHHhcccc
Confidence 999999998888888877
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-21 Score=191.66 Aligned_cols=424 Identities=14% Similarity=0.134 Sum_probs=331.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006343 138 AMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG 217 (649)
Q Consensus 138 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g 217 (649)
.|..-..+.|++++|.+.-...-... +.+..+...+-..+....+++...+--...++.. +--..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444456677777766554333221 1112222222222333334443333322223221 122456777888888899
Q ss_pred CHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH---HHHHHHHHHcCCChHHHHHHHhhC
Q 006343 218 FMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVS---WTTMITGFSSKGNLEKSIELFNMM 291 (649)
Q Consensus 218 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~ 291 (649)
++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+-|+.. .+-+...+-..|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999988765 356789999999999999999999999887655533 334556666789999999998877
Q ss_pred CCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCccc
Q 006343 292 PEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ-LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVS 367 (649)
Q Consensus 292 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (649)
.+. -.+.|+.|...+...|+...|++.|++... +.|+- ..|..+-..+...+.++.|...+.++....+. ...
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chh
Confidence 653 356899999999999999999999999987 46664 37778888888889999999988887776544 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDE--R-NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACN 443 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 443 (649)
++..+...|-..|.++.|+..+++..+ | =...|+.|..++-..|+..+|...|.+.+.. .|+ ....+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 777788889999999999999998874 3 3569999999999999999999999999885 455 568899999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHH
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAK 520 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~ 520 (649)
..|.+++|..+|..... +.|. ....+.|...|-.+|++++|..-+++.. +.|+ +..++.++..|...|+++.|.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999998876 6787 7788999999999999999999999865 7888 669999999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhhCCCccCCce
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKLKRIRKSPGC 571 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~g~ 571 (649)
+.+.+++..+|.-+.++.+|+.+|-.+|+..+|+. .+..++-+.--+..+|
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 99999999999999999999999999999999999 7777765433333333
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.2e-18 Score=187.97 Aligned_cols=414 Identities=12% Similarity=0.036 Sum_probs=254.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006343 138 AMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG 217 (649)
Q Consensus 138 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g 217 (649)
.....+.+.|++++|+..|++.+. +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 444455555556666666555544 23455555555555555566666665555555543 123445555566666666
Q ss_pred CHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 006343 218 FMDEANKVFSMMSKR---DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK 294 (649)
Q Consensus 218 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (649)
++++|...|...... +......++..+.......++...+..- ..+...+..+.. |......+....-++...+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 666666555433211 1111111111111111112222222221 111122222222 11111111111111111111
Q ss_pred C---hhhHHHHHHHH---hcCCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcc
Q 006343 295 D---DVTWTAIISGF---VNNEQYEEAFRWFIEMLRKD-VRPN-QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDV 366 (649)
Q Consensus 295 ~---~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (649)
+ ...+..+...+ ...+++++|++.|++.++.+ ..|+ ...+..+...+...|++++|...+..+++..+. ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 1 11111111111 23467888888888888754 2343 345556666677788888888888888776543 45
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN 443 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 443 (649)
..+..+...+...|++++|...|++.. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 567778888888999999999988765 3567788889999999999999999999998863 334556677777888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh-hH-------HHHHHHHHHhc
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP-GV-------WGALLGAGRTH 513 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~-~~-------~~~ll~~~~~~ 513 (649)
..|++++|+..|+...+ ..| ++..+..++.++...|++++|.+.+++.. ..|+. .. ++..+..+...
T Consensus 445 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999887 345 47888999999999999999999998854 33431 11 12222233446
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 514 LNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
|++++|+..++++++++|++..++..++.+|...|++++|.+..+...
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999999555443
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.3e-19 Score=183.02 Aligned_cols=296 Identities=13% Similarity=0.115 Sum_probs=177.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHH
Q 006343 145 KVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDY---DIILGNSIITMYGRLGFMDE 221 (649)
Q Consensus 145 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~y~~~g~~~~ 221 (649)
..|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444321 1122233333344444444444444444444322111 11345566677777777777
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hHHHHHHHHHHcCCChHHHHHHHhh
Q 006343 222 ANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDF--------VSWTTMITGFSSKGNLEKSIELFNM 290 (649)
Q Consensus 222 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~ 290 (649)
|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+. ..+..+...+.+.|++++|...|++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777654 3455677777777777777777777776643211 1234556666777777777777776
Q ss_pred CCC--C-ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCccc
Q 006343 291 MPE--K-DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVS 367 (649)
Q Consensus 291 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (649)
+.+ | +...+..++..+.+.|++++|+++|+++.+.+......++..+..++...|+.++|...+..+.+..+ +..
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p--~~~ 283 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP--GAD 283 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cch
Confidence 653 2 34566777777888888888888888877643222234566666777777777777777777666543 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQ---NGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC 442 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 442 (649)
.+..++..+.+.|++++|..+|+++. .|+...++.++..+.. +|+.++++.++++|.+.+++|+.. ..|
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c 357 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRC 357 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EEC
Confidence 45667777777777777777777654 3666667666666553 456777777777777766666655 336
Q ss_pred hccCcHH
Q 006343 443 NHVGLVE 449 (649)
Q Consensus 443 ~~~g~~~ 449 (649)
.++|...
T Consensus 358 ~~cg~~~ 364 (389)
T PRK11788 358 RNCGFTA 364 (389)
T ss_pred CCCCCCC
Confidence 6666543
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4e-17 Score=169.55 Aligned_cols=532 Identities=12% Similarity=0.086 Sum_probs=356.8
Q ss_pred hHHHHHHHhhCCCCCcch-HHHHHHHH--HhcCChhhHHHHHhhcccC----CCChhhHHHHHHHHHccCChHHHHHHHH
Q 006343 23 IYEAFEIFATMPMRNAVS-YAAMITGF--VRRGMFYEAEELYVNMPAR----WRDSVCSNALISGYLKVGRCEEAARIFE 95 (649)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~-~~~li~~~--~~~g~~~~A~~~~~~m~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 95 (649)
+++|.+.|......++.- ...+..++ ...|++..|+.+|...... +||+.+- +-..+.++|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHH
Confidence 578888888776433332 22333333 4467889999999886554 4454322 2244568899999999999
Q ss_pred hcccCChhHHHHHHHHHH------hCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-
Q 006343 96 AMVEKDVVAWGSMVDGYC------KKGRVIEAREIFDKMP---EKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMA- 165 (649)
Q Consensus 96 ~~~~~~~~~~~~li~~~~------~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 165 (649)
.+.+-|+...++++.... ....+..+..++.+.- ..|++..+.|.+-|.-.|+++.+..+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 888777665555554322 1233455555555443 257778888888888889999999888888764311
Q ss_pred -CChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHH
Q 006343 166 -FNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK--R-DAVSWNSLI 241 (649)
Q Consensus 166 -p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 241 (649)
.-...|-.+-+++-..|+++.|.+.+....+..-...+..+-.|..+|.+.|+++.+...|+.+.. | +..+...+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 113346667788888899999999888877754333234445678889999999999998888764 2 445666666
Q ss_pred HHHHhcC----CHHHHHHHHhhCCCC---ChhHHHHHHHHHHcCCChHHHHHHHhhC--------CCCChhhHHHHHHHH
Q 006343 242 SGYVHNG----EIEEAYRLFERMPGK---DFVSWTTMITGFSSKGNLEKSIELFNMM--------PEKDDVTWTAIISGF 306 (649)
Q Consensus 242 ~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~ 306 (649)
..|+..+ ..++|..++.+..++ |...|-.+..+|....-+.. +..|..+ ....+...|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 6676664 557777777776654 45566666666655443322 4333332 224566788888888
Q ss_pred hcCCCHHHHHHHHHHHHHC---CCCCCH-----H-HHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006343 307 VNNEQYEEAFRWFIEMLRK---DVRPNQ-----L-TLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYS 377 (649)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~---g~~p~~-----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (649)
...|++.+|...|.+.... ...+|. . +--.+....-..++.+.|.+.|..+.+..+. -+..|-.+..+..
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence 8889999999888887654 223333 2 2223344445667888888888888886543 3344444444444
Q ss_pred hcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc---------
Q 006343 378 KCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE-GLVPNQITFLSVLSACNH--------- 444 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~--------- 444 (649)
..+...+|...++... ..|+..|+.+...+.....+..|-+-|....+. ...+|..+..+|.+.|..
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 4567778888887765 466777877777888877777777766665542 223677777777665542
Q ss_pred ---cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhH
Q 006343 445 ---VGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 445 ---~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
.+..++|+++|....+ ..| |...-+-++-.++..|++.+|.++|.+.. ......+|-++...|...|++..
T Consensus 622 ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH
Confidence 3456677777777765 334 56666778888888888888888888765 23356678888888888888888
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 519 AKLAAQHLME--LEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 519 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
|+++|+..++ ..-+++.....|+.++...|+|.+|.+ +.+.+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888888877 334566777888888888888888888 444443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5e-17 Score=177.34 Aligned_cols=438 Identities=11% Similarity=-0.016 Sum_probs=293.4
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcc
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPE--KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAF-NSITLTILFEACGRF 181 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 181 (649)
+..+...|.+.|+++.|+..|++... |+...|..+..+|.+.|++++|++.+...++. .| +...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44556677778888888888877653 66667777778888888888888888887764 34 345666677777788
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 182 FRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP 261 (649)
Q Consensus 182 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 261 (649)
|++++|...+..+...+-..+... ..++..+.+......+...++.-+ .+..++..+.. |........+..-+....
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 888888777765554432112111 112221111111233334433322 22333333322 222211111111122111
Q ss_pred CCChh---HHHHHHHHH---HcCCChHHHHHHHhhCCCC------ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 006343 262 GKDFV---SWTTMITGF---SSKGNLEKSIELFNMMPEK------DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRP 329 (649)
Q Consensus 262 ~~~~~---~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 329 (649)
+.+.. .+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.++. .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 11111 111111111 2346788899988877642 3457888888999999999999999999875 45
Q ss_pred C-HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHH
Q 006343 330 N-QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMIS 405 (649)
Q Consensus 330 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 405 (649)
+ ...+..+...+...|++++|...+..+++..+. ++.++..+...|...|++++|...|++.. +.+...|..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 5 457778888888999999999999988887644 67788899999999999999999999876 345677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHH
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGP-E-------HYACMVDI 477 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~ 477 (649)
.+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+.... +.|+. . .++.....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHH
Confidence 9999999999999999998752 33467788888899999999999999999886 44431 1 11222233
Q ss_pred HHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 478 LGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
+...|++++|.+++++.. ..|+ ...+..++..+...|++++|+..+++++++.+.....+ ....|-++.+
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~ 589 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATR 589 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHH
Confidence 445799999999999854 5555 45788899999999999999999999999988543322 2224445666
Q ss_pred HHHHHhh
Q 006343 556 VRMKKKL 562 (649)
Q Consensus 556 ~~~~~~~ 562 (649)
++...++
T Consensus 590 ~~~~~~~ 596 (615)
T TIGR00990 590 TQIQVQE 596 (615)
T ss_pred HHHHHHH
Confidence 5444443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.5e-18 Score=179.62 Aligned_cols=299 Identities=11% Similarity=0.111 Sum_probs=180.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHcCCChHHHHHHHhhCCCCC-------hhhHHHHHHHHhcCC
Q 006343 241 ISGYVHNGEIEEAYRLFERMPGK---DFVSWTTMITGFSSKGNLEKSIELFNMMPEKD-------DVTWTAIISGFVNNE 310 (649)
Q Consensus 241 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 310 (649)
...+...|++++|+..|.++.+. +..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33455666777777777666532 22345555556666666666666665554321 123455555556666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHH
Q 006343 311 QYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFT 390 (649)
Q Consensus 311 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (649)
++++|+.+|+++.+.. +++..++..+...+...|++++|...+..+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666655431 22333444444444444444444444444443322111000
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC--h
Q 006343 391 NIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG--P 468 (649)
Q Consensus 391 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 468 (649)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|+.+... .|+ .
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 249 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLS 249 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHH
Confidence 01134455666677777777777777777642 223445666666777777777777777777652 343 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh-
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV- 546 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 546 (649)
..+..++.+|.+.|++++|.+.++++. ..|+...+..++..+...|++++|...++++++..|++.. +..+...+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhc
Confidence 556777788888888888888887765 4566666677777888888888888888888888886553 4444444332
Q ss_pred --cCCchHHHHHHHHHhhCCCccCCcee
Q 006343 547 --IGKKRDGNRVRMKKKLKRIRKSPGCS 572 (649)
Q Consensus 547 --~g~~~~a~~~~~~~~~~~~~~~~g~s 572 (649)
.|+.+++..+.+.|.++++++.|.+.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 45888888877777777788888644
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.4e-16 Score=177.06 Aligned_cols=389 Identities=7% Similarity=-0.037 Sum_probs=222.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006343 139 MVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGF 218 (649)
Q Consensus 139 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~ 218 (649)
.+......|+.++|++++.+..... +.+...+..+..++...|++++|.+++..+++.. +.+......+..++...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3455566777777777777776521 2334456666666667777777777777766643 2234455566666667777
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHcCCChHHHHHHHhhCC
Q 006343 219 MDEANKVFSMMSK--R-DAVSWNSLISGYVHNGEIEEAYRLFERMPG--K-DFVSWTTMITGFSSKGNLEKSIELFNMMP 292 (649)
Q Consensus 219 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (649)
.++|...+++... | +.. |..+...+...|+.++|+..++++.+ | +...+..+..++...+..+.|...++.+.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 7777766666543 2 334 66666666666666666666666543 2 33344455555556666666666666555
Q ss_pred CCChh--------hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHh-
Q 006343 293 EKDDV--------TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATL---NQGSQIHAHVVKM- 360 (649)
Q Consensus 293 ~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~- 360 (649)
. ++. ....++......+. ...+.+ +.|...++.+.+.
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHHHHHHHHHHhhc
Confidence 4 111 01111111110000 001111 3344444444432
Q ss_pred CCCCccc--HHHH---HHHHHHhcCCHHHHHHHHHhcCCCC---hH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 006343 361 NMESDVS--IQNS---LVSLYSKCGNVVDAYRIFTNIDERN---IV-SYNSMISGFAQNGLGEEALNLFRKMKDEGLVP- 430 (649)
Q Consensus 361 ~~~~~~~--~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 430 (649)
...|+.. ...+ .+.++...|+.++|+..|+.+...+ +. .-..+...|...|++++|+.+|+++.+.....
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 1111111 0001 0223345567777777777666321 11 11123556777777777777777766532111
Q ss_pred --CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 431 --NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN----------IEPG---PEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 431 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
.......+..++...|++++|..+++.+..... -.|+ ...+..++.++...|++++|++.++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123344455566777777777777777665210 1122 2244566777888888888888888765
Q ss_pred --CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 496 --FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 496 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
.+.+...+..++..+...|+.++|+..++++++++|+++..+..++.++...|+|++|..+.+.+.
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334466777788888888888888888888888888888888888888888888888888554443
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.7e-16 Score=164.91 Aligned_cols=515 Identities=14% Similarity=0.089 Sum_probs=382.5
Q ss_pred CChHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChh-hHHHHHHHHH---ccCChHHH
Q 006343 21 CSIYEAFEIFATMPM------RNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSV-CSNALISGYL---KVGRCEEA 90 (649)
Q Consensus 21 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~---~~~~~~~a 90 (649)
|++..|..+|..... +|+. -.+-.++.+.|+.+.|+..|.+..+..|..+ ++-.|.-.-. ....+..|
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 789999999998432 2332 2233566789999999999999988644322 2221111111 22345556
Q ss_pred HHHHHhcc---cCChhHHHHHHHHHHhCCChhHHHHHhccCCCCC------cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006343 91 ARIFEAMV---EKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKN------VVAWTAMVDGYMKVDCFEDGFDLFLSMRR 161 (649)
Q Consensus 91 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 161 (649)
.+.+...- ..+|.+.+.|.+.|.-.|++..+..+.+.+...+ ..+|--+.++|-..|++++|...|.+..+
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 66666553 3689999999999999999999999988877533 23577889999999999999999977765
Q ss_pred CCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHhhCCCC---
Q 006343 162 GGMAFNSIT--LTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG----FMDEANKVFSMMSKR--- 232 (649)
Q Consensus 162 ~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g----~~~~A~~~~~~~~~~--- 232 (649)
. .||.++ +.-+-..+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..++
T Consensus 336 ~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 336 A--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred c--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 3 455544 3446677889999999999999998864 445667777778887775 567777777777653
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHh-hCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC-------C---
Q 006343 233 DAVSWNSLISGYVHNGEI------EEAYRLFE-RMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK-------D--- 295 (649)
Q Consensus 233 ~~~~~~~li~~~~~~g~~------~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~--- 295 (649)
|..+|-.+...+.+..-+ ..|..++. .+....+...|.+...+...|+++.|...|+..... +
T Consensus 413 d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 566777777766554433 33443332 233567789999999999999999999999876532 2
Q ss_pred ---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHH
Q 006343 296 ---DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLT-LSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNS 371 (649)
Q Consensus 296 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (649)
+.+-..+...+-..++++.|.+.|..+... .|+-+. |..++......+.+.++...+..+....- .++.+++-
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHH
Confidence 223445667777889999999999999985 566553 44444333445778888888888777543 37777887
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHH
Q 006343 372 LVSLYSKCGNVVDAYRIFTNID-----ERNIVSYNSMISGFAQ------------NGLGEEALNLFRKMKDEGLVPNQIT 434 (649)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t 434 (649)
+.+.|.+...+.-|.+-|..+. .+|..+.-+|...|.+ .+..++|+++|.+.++.. +-|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh
Confidence 8889999999888888665554 2355555555554432 356789999999998863 556777
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT----FEPPPGVWGALLGAG 510 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~~~~~~~ll~~~ 510 (649)
-+++.-.+++.|.+.+|..+|.+.... ......+|-.+...|..+|++..|.+.|+... -..+..+.+-|..++
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 788888899999999999999999884 34467788899999999999999999998754 244677889999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
...|.+.+|.+.+..++.+.|.++....+++-+..+
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 999999999999999999999999988888776654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.4e-16 Score=170.40 Aligned_cols=403 Identities=10% Similarity=-0.006 Sum_probs=279.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEAC 178 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 178 (649)
+....-.+.+....|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+.. +.+......+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33445566777889999999999998764 233358999999999999999999999988752 23455666777788
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHH
Q 006343 179 GRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK--R-DAVSWNSLISGYVHNGEIEEAYR 255 (649)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 255 (649)
...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 89999999999999999874 33455 88889999999999999999998875 3 55667778888999999999999
Q ss_pred HHhhCCCCChh--------HHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 006343 256 LFERMPGKDFV--------SWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQY---EEAFRWFIEMLR 324 (649)
Q Consensus 256 ~~~~m~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~ 324 (649)
.++.... ++. ....++..+... .....+++ ++|++.++.+.+
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~--------------------------~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMP--------------------------TRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhccc--------------------------ccChhHHHHHHHHHHHHHHHHHh
Confidence 9998775 321 111122221111 11111222 445555555553
Q ss_pred C-CCCCCHH-HHH----HHHHHHHccCChhHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-
Q 006343 325 K-DVRPNQL-TLS----SVLSASAATATLNQGSQIHAHVVKMNME-SDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERN- 396 (649)
Q Consensus 325 ~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 396 (649)
. ...|+.. .+. ..+.++...++.++|+..++.+.+.+.. |+ .....+..+|...|++++|...|+++...+
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 2 1122211 110 1122334445666666666665555422 11 112224556777777777777777654211
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHhhccCcHHHHHHHHH
Q 006343 397 ------IVSYNSMISGFAQNGLGEEALNLFRKMKDEG-----------LVPNQ---ITFLSVLSACNHVGLVEEGFIYFK 456 (649)
Q Consensus 397 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 456 (649)
...+..+..++...|++++|+.+++++.... -.|+. ..+..+...+...|+.++|+..++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2234555667778888888888888877642 12332 234556667888999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 457 SMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
.+... .+.+...+..++.++...|++++|++.+++.. ..|+ ...+..++..+...|++++|+..++++++..|+++
T Consensus 384 ~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 384 ELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99873 33358889999999999999999999999876 5666 56777777788899999999999999999999877
Q ss_pred chH
Q 006343 535 TPY 537 (649)
Q Consensus 535 ~~~ 537 (649)
.+.
T Consensus 462 ~~~ 464 (765)
T PRK10049 462 GVQ 464 (765)
T ss_pred HHH
Confidence 543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.1e-16 Score=173.90 Aligned_cols=321 Identities=10% Similarity=0.010 Sum_probs=217.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCCh
Q 006343 208 SIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNL 281 (649)
Q Consensus 208 ~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 281 (649)
.++..+.+.|+.+.|..+++.... .+...+..++.+....|++++|+..|+++.. .+...+..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345556677888888877776643 3455666666777778888888888887753 2445677777777888888
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 006343 282 EKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVV 358 (649)
Q Consensus 282 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (649)
++|...|+++.+ .+...|..++..+...|++++|...++++.... |+.......+..+...|++++|...+..+.
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888877654 245577777777888888888888887776643 322222222234667778888887777776
Q ss_pred HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 006343 359 KMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEE----ALNLFRKMKDEGLVPN 431 (649)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~ 431 (649)
+....++......+...+.+.|+.++|...|+... +.+...+..+...+...|++++ |+..|++..+.. +.+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 65443344444555667777788888887777765 3455667777777777887775 677777777642 233
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHH-HHHHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVW-GALLG 508 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~-~~ll~ 508 (649)
...+..+...+...|++++|...++.... ..|+ ...+..+..+|.+.|++++|.+.++++. ..|+...+ ..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45666777777777888888888777776 3454 5566667777778888888888777765 45554333 33455
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
++...|+.++|+..++++++.+|++.
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 66777888888888888888777654
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.1e-16 Score=173.90 Aligned_cols=348 Identities=11% Similarity=0.026 Sum_probs=267.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 006343 168 SITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGY 244 (649)
Q Consensus 168 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 244 (649)
..-...++..+.+.|+++.|..++...+.....+... ...++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345567778888999999999999988876544333 44455666679999999999998864 3566788888999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHhcCCCHHHHHHH
Q 006343 245 VHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE--K-DDVTWTAIISGFVNNEQYEEAFRW 318 (649)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 318 (649)
.+.|++++|+..|++... .+...+..+...+...|++++|...++.+.. | +...+..+ ..+.+.|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998764 3456788889999999999999998886643 2 33344343 347888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH----HHHHHHhcC-
Q 006343 319 FIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVD----AYRIFTNID- 393 (649)
Q Consensus 319 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~- 393 (649)
++++++....++......+..++...|+.++|...+..+.+..+. ++.++..+..+|...|+.++ |...|++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999887643344555555667788899999999999998887654 67778889999999999885 788888776
Q ss_pred --CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCCh-h
Q 006343 394 --ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGP-E 469 (649)
Q Consensus 394 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~ 469 (649)
+.+...+..+...+...|++++|+..+++..+. .|+ ......+..++...|++++|...|+.+.. ..|+. .
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~ 353 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSK 353 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchH
Confidence 345678889999999999999999999998885 444 45566677788899999999999998886 35653 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
.+..+..++...|+.++|.+.+++.. ..|+.. ..++++|...+.++++.-+...
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCcc
Confidence 44456778899999999999998865 445532 3455678888888888655333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.3e-15 Score=162.77 Aligned_cols=423 Identities=9% Similarity=0.027 Sum_probs=285.4
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 006343 109 VDGYCKKGRVIEAREIFDKMPEKNVV---AWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYR 185 (649)
Q Consensus 109 i~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 185 (649)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... ..........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 34557899999999999998863332 2448888888999999999999998721 1112223333345677889999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--cCCHHHHHHHHhhCCC-
Q 006343 186 EGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVH--NGEIEEAYRLFERMPG- 262 (649)
Q Consensus 186 ~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~- 262 (649)
.|.++++.+++.... +..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999887633 366777888999999999999999999887544333334444444 5666669999998874
Q ss_pred -C-ChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhH--HHHHHHHhcC---------C---CHHHHHHHHHHHH
Q 006343 263 -K-DFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTW--TAIISGFVNN---------E---QYEEAFRWFIEML 323 (649)
Q Consensus 263 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~li~~~~~~---------g---~~~~A~~~~~~m~ 323 (649)
| +...+..++....+.|-...|.++..+-+.- ....| ...+.-.++. . -.+.|+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 4567788888999999999999888876642 11111 1111111211 1 2344566666655
Q ss_pred HC-CCCCCH-H----HHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 006343 324 RK-DVRPNQ-L----TLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDER-- 395 (649)
Q Consensus 324 ~~-g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 395 (649)
.. +-.|.. . ...-.+-++...++..+++..++.+...+.+....+-.++.++|...++.++|..+|..+...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 222322 1 222345567777888888888888887776655667777888888888888888888876421
Q ss_pred -------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCHHH-HHHHHHHhhccCcHHHHHHH
Q 006343 396 -------NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGL-------------VPNQIT-FLSVLSACNHVGLVEEGFIY 454 (649)
Q Consensus 396 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~g~~~~a~~~ 454 (649)
+......|.-+|...+++++|..+++++.+.-. .||-.. +..++..+...|+..+|.+.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222346677778888888888888888876311 122222 33344556777888888888
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 455 FKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 455 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
++.+.. ..| |......+.+++...|++.+|++.++... ..|+ ..+....+.+....+++++|..+.+.+++..|
T Consensus 439 le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 887766 344 57777788888888888888888886654 4454 44555666666777888888888888888888
Q ss_pred CCCch
Q 006343 532 DSATP 536 (649)
Q Consensus 532 ~~~~~ 536 (649)
+++..
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 76643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.5e-14 Score=157.64 Aligned_cols=410 Identities=10% Similarity=0.024 Sum_probs=199.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006343 143 YMKVDCFEDGFDLFLSMRRGGMAFNSI-TLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDE 221 (649)
Q Consensus 143 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~ 221 (649)
..+.|+++.|+..|++..+. .|+.. ....++..+...|+.++|..+++..+. .-........++...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34566666666666666543 23321 111455555555666666666666551 111112222233445556666666
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHcCCChHHHHHHHhhCCC--C
Q 006343 222 ANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFV--SWTTMITGFSSKGNLEKSIELFNMMPE--K 294 (649)
Q Consensus 222 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 294 (649)
|.++|+++.+ .+...+..++..|...++.++|++.++++...++. .+..++..+...++..+|+..++++.+ |
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 6666666553 13344555555666666666666666666543332 222222333334444446666665553 2
Q ss_pred -ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HccCChhH---HHHHHHHHHH
Q 006343 295 -DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLT------LSSVLSAS-----AATATLNQ---GSQIHAHVVK 359 (649)
Q Consensus 295 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~-----~~~~~~~~---a~~~~~~~~~ 359 (649)
+...+..+..++.+.|-...|+++..+-... +.|...- ....+..- ....++.. +..-+..+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3445555556666666666665554432111 1111100 00001000 01112222 2222333222
Q ss_pred h-CCCCcc--cHHHHH---HHHHHhcCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 006343 360 M-NMESDV--SIQNSL---VSLYSKCGNVVDAYRIFTNIDER----NIVSYNSMISGFAQNGLGEEALNLFRKMKDEG-- 427 (649)
Q Consensus 360 ~-~~~~~~--~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 427 (649)
. +..|.. ....+. +-++.+.|+..++++.|+.+... ...+-..+..+|...+++++|+.+|+.+....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 111111 111222 23445556666666666666521 11233445566666666666666666655432
Q ss_pred ---CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 428 ---LVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN----------IEPG---PEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 428 ---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
..++......|.-|+..++++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112222234555666666666666666666654210 0122 233344555566666666666666
Q ss_pred HhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 006343 492 NSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 492 ~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
+++. .+-|..++..+...++..|++..|+..++.+..++|++..+...++.++...|+|++|.++
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6554 2334555666666666666666666666666666666666666666666666666666553
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1e-12 Score=131.24 Aligned_cols=489 Identities=12% Similarity=0.073 Sum_probs=398.1
Q ss_pred HHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHH
Q 006343 79 SGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDL 155 (649)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 155 (649)
++.......+.|+-++.+.++--+.+ .-|.-+|++..-++.|.+++.+..+ .+...|.+-...--++|+.+....+
T Consensus 384 KaAVelE~~~darilL~rAveccp~s-~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECCPQS-MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 44555666777888888776522211 1233345666777888888877654 5677888777777889999888888
Q ss_pred HHH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 156 FLS----MRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYD--IILGNSIITMYGRLGFMDEANKVFSMM 229 (649)
Q Consensus 156 ~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~~ 229 (649)
..+ +...|+..+...|..=..+|-..|..-.+..|....+..|++.. ..+|+.-...|.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 765 45689999999999999999999999999999999999987643 568888999999999999999999887
Q ss_pred CC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHH
Q 006343 230 SK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTWT 300 (649)
Q Consensus 230 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 300 (649)
.+ .+...|...+..--..|..++-..+|++... .....|.....-+-..|++..|..++..+-+. +...|-
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 65 4667888888888888999999999998764 34456666777788899999999999887652 556899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG 380 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (649)
+-+.....+.++++|..+|.+.... .|+...|.--+..---++..++|+++++..++.-+. -...|..+...+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHH
Confidence 9999999999999999999998874 566676666666666688999999999988886433 4567788888999999
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 006343 381 NVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKS 457 (649)
Q Consensus 381 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 457 (649)
+++.|+..|..-.+ ..+-.|-.+...--+.|..-.|..+|++.+-.+ +-|...|...+..=.+.|+.++|..+...
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987653 455689888888888999999999999998875 55677888999999999999999999988
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 006343 458 MKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (649)
..++ .+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-++...+.....++.|..-|++++..+|++..++
T Consensus 779 ALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 8874 55668889999999999999888888888875 6777777888888999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECC
Q 006343 538 VVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKD 578 (649)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~ 578 (649)
..+-..+...|.-++-.++++.-... .+.-|..|+.+..
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999988888888776653 4556888876544
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.2e-14 Score=138.51 Aligned_cols=469 Identities=14% Similarity=0.121 Sum_probs=281.4
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcccC--CCChhhHH-HHHHHHHccCChHHHHHHHHhccc--C------ChhHHHHHHH
Q 006343 42 AAMITGFVRRGMFYEAEELYVNMPAR--WRDSVCSN-ALISGYLKVGRCEEAARIFEAMVE--K------DVVAWGSMVD 110 (649)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~li~ 110 (649)
..|.+.|..+..+.+|+..|+-+.+. .|+.-.+. .+-..+.+...+.+|.+.++..+. | .+.+.+.+.-
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34556677778888888888877665 56654432 233556777788888888776542 1 2334556666
Q ss_pred HHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 006343 111 GYCKKGRVIEAREIFDKMPE--KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGV 188 (649)
Q Consensus 111 ~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 188 (649)
.+.+.|++++|+..|+.+.+ ||..+--.|+-++.--|+-++..+.|.+|..-...||..-|..
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~--------------- 349 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK--------------- 349 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC---------------
Confidence 77888888899888888764 6766555555556667888888888888877655555443311
Q ss_pred HHHHHHHHcCCCCChhhHHH-----HHHHHHhcCC--HHHHH----HHHhhCCCCChhh-HHHHHHHHHhcCCHHHHHHH
Q 006343 189 QVHGLVSRFGFDYDIILGNS-----IITMYGRLGF--MDEAN----KVFSMMSKRDAVS-WNSLISGYVHNGEIEEAYRL 256 (649)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~-----l~~~y~~~g~--~~~A~----~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~ 256 (649)
..-+|+....|. .+.-.-+.++ .++++ ++..-+..||... +.-.+...-.....+-|.++
T Consensus 350 --------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 350 --------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred --------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 001122221111 1111111111 11111 1111111222110 11111111111111111110
Q ss_pred HhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHH----HHH-HHHhc-CCCHHHHHHHHHHHHHCCCCCC
Q 006343 257 FERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWT----AII-SGFVN-NEQYEEAFRWFIEMLRKDVRPN 330 (649)
Q Consensus 257 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 330 (649)
--.-..-|.+.|+++.|.+++.-+.++|..+-+ .|- --|.+ -.++..|.++-+..+... +-+
T Consensus 422 -----------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn 489 (840)
T KOG2003|consen 422 -----------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYN 489 (840)
T ss_pred -----------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccC
Confidence 000112344555555555555555443322111 111 11111 223444444444333221 122
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHH
Q 006343 331 QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGF 407 (649)
Q Consensus 331 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 407 (649)
....+.--......|+++.|...+..+....-.-....|| +.-.+.+.|++++|+..|-++. ..++.....+...|
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222211122234566666666666665543222222222 2334677899999999987764 46677777788889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHH
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAE 486 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~ 486 (649)
-...++..|++++-+.... ++.|...+..|...|-+.|+-.+|.+++-.- |..-| +.++..-|..-|....-+++
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHH
Confidence 9999999999999776654 4556777888888999999999999876443 33445 68888889999999999999
Q ss_pred HHHHHHhCC-CCCChhHHHHHHHHHH-hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 006343 487 AIDLINSMT-FEPPPGVWGALLGAGR-THLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 487 A~~~~~~~~-~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (649)
|..+|++.. +.|+.+-|..++..|. +.||++.|...++......|.+..++-.|..++...|.-
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999876 8999999999998875 789999999999999999999999999999999888753
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.9e-12 Score=134.48 Aligned_cols=532 Identities=14% Similarity=0.098 Sum_probs=347.9
Q ss_pred HHHHhCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHH
Q 006343 14 TALINNNCSIYEAFEIFATMPM---RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEE 89 (649)
Q Consensus 14 ~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~ 89 (649)
+..... |++++|.+++.++.. ++...|.+|...|-+.|+.++++..+--+--. +.|...|..+.....+.|++++
T Consensus 147 N~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 334445 899999999998864 45668999999999999999998876554333 5567788888899999999999
Q ss_pred HHHHHHhcccCChhHHH---HHHHHHHhCCChhHHHHHhccCCCCCc-cc---HH----HHHHHHHhcCChhHHHHHHHH
Q 006343 90 AARIFEAMVEKDVVAWG---SMVDGYCKKGRVIEAREIFDKMPEKNV-VA---WT----AMVDGYMKVDCFEDGFDLFLS 158 (649)
Q Consensus 90 a~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~f~~~~~~~~-~~---~~----~li~~~~~~g~~~~A~~~~~~ 158 (649)
|.-.|.++++.++.-|. --..+|-+.|+...|.+-|.++.+.+. +. .. .++..+...+.-+.|++.+..
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875554443 345788899999999988888765322 11 22 234455666777888888888
Q ss_pred HHhC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHc---------------------------CCCCChhh-HHHH
Q 006343 159 MRRG-GMAFNSITLTILFEACGRFFRYREGVQVHGLVSRF---------------------------GFDYDIIL-GNSI 209 (649)
Q Consensus 159 m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~l 209 (649)
.... +-..+..+++.++..+.+...++.+.......... ++.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7762 22344456666666666666676666655555441 12233333 1111
Q ss_pred HHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHcCCCh
Q 006343 210 ITMYGRLGFMDEANKVFSMMS----KRDAVSWNSLISGYVHNGEIEEAYRLFERMPG----KDFVSWTTMITGFSSKGNL 281 (649)
Q Consensus 210 ~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~ 281 (649)
--...+.+...++..-|.... ..++..|.-+..+|.+.|++.+|+.+|..+.. .+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 122233444444444433222 23556788888999999999999999988874 2557889999999999999
Q ss_pred HHHHHHHhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChhHH
Q 006343 282 EKSIELFNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLR--------KDVRPNQLTLSSVLSASAATATLNQG 350 (649)
Q Consensus 282 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 350 (649)
+.|...|+.+... +...--.|...+.+.|++++|++.+..+.. .+..|+..........+.+.|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999988754 334455566778899999999999988542 23445555555566667777777665
Q ss_pred HHHHHHHHHhC----------------------CCCcccHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCChHH-
Q 006343 351 SQIHAHVVKMN----------------------MESDVSIQNSLVSLYSKCGNVVDAYRIFTNI--------DERNIVS- 399 (649)
Q Consensus 351 ~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~- 399 (649)
..+-..++... ..........++.+-.+.++.....+-...- ..-...-
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 54444333211 1111222233344444444433222221111 1112222
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHH---HH-HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC---h
Q 006343 400 ---YNSMISGFAQNGLGEEALNLFRKMKDEGLV-PNQI---TF-LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG---P 468 (649)
Q Consensus 400 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~---t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~ 468 (649)
+.-++.++++.+++++|+.+...+....+. -+.. .+ ...+.++...+++..|..+++.|...++...+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 345677889999999999999988875422 1222 22 33455677889999999999999886444333 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGA--GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
..|++......+.|+-.-=..++.... ..|+......++.+ ....+.+.-|...+-++....|++|..-..++-++.
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 567766777777776665566665533 33433222222222 346677888999999999999999988887777765
Q ss_pred h
Q 006343 546 V 546 (649)
Q Consensus 546 ~ 546 (649)
+
T Consensus 786 h 786 (895)
T KOG2076|consen 786 H 786 (895)
T ss_pred H
Confidence 4
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.1e-12 Score=122.81 Aligned_cols=228 Identities=13% Similarity=0.194 Sum_probs=135.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006343 132 NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIIT 211 (649)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 211 (649)
...++..||.|+++--..+.|.+++++-.....+.+..+||.+|.+.+-. .++++...|+...+.||..++|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 33455555555555555555555555555555555555555555544322 22555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHH----hhCC----CCChhhHHHHHHHHHhcCCHHH-HHHHHhhCC------------CCChhHHHH
Q 006343 212 MYGRLGFMDEANKVF----SMMS----KRDAVSWNSLISGYVHNGEIEE-AYRLFERMP------------GKDFVSWTT 270 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~------------~~~~~~~~~ 270 (649)
+.++.|+++.|+..+ .+|+ +|...+|..+|..+++.++..+ |..+..++. ..|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 555555555444332 2222 2455555555555555555432 222222221 123445556
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCC-----------ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006343 271 MITGFSSKGNLEKSIELFNMMPEK-----------DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLS 339 (649)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 339 (649)
-+..|.+..+.+.|.++-.-+... ...-|..+....++....+.-+..|+.|.-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 666666777777777665544421 223466677777788888888888888887777788888888888
Q ss_pred HHHccCChhHHHHHHHHHHHhCCC
Q 006343 340 ASAATATLNQGSQIHAHVVKMNME 363 (649)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~ 363 (649)
+....+.++-..+++..++..|..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh
Confidence 888888888888888877776644
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=6e-11 Score=118.85 Aligned_cols=479 Identities=13% Similarity=0.093 Sum_probs=380.0
Q ss_pred hcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhcc---cCChhHHHHHHHHHHhCCChhHHHHHhc
Q 006343 50 RRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAMV---EKDVVAWGSMVDGYCKKGRVIEAREIFD 126 (649)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~ 126 (649)
.....++|.-++.+..+.-|.. .-|.-++++..-++.|+.++.+.. ..+..+|-+-...=-..|+.+...++.+
T Consensus 388 elE~~~darilL~rAveccp~s---~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQS---MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred hccChHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445555666666665542222 234466777788889999988764 4577888877777778899998888887
Q ss_pred cCCC--------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 006343 127 KMPE--------KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFN--SITLTILFEACGRFFRYREGVQVHGLVSR 196 (649)
Q Consensus 127 ~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 196 (649)
+-.. -|...|-.=...|-..|..-.+..+....+.-|+.-. ..|+......|.+.+.++-++.++...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 6431 3445677777788888988889999888888887643 46999999999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHH
Q 006343 197 FGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTT 270 (649)
Q Consensus 197 ~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ 270 (649)
. ++.+..+|...+..=-..|..++-..+|++... +....|-.....+-..|+...|..++.+.-+ .+...|.+
T Consensus 545 v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 545 V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 5 355677888777777778999999999988764 4667788888889999999999999987753 35578999
Q ss_pred HHHHHHcCCChHHHHHHHhhCCC--CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCh
Q 006343 271 MITGFSSKGNLEKSIELFNMMPE--KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASAATATL 347 (649)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~ 347 (649)
-+..-....+++.|..+|.+... +....|.--+....-.+..++|++++++.++. -|+.. .|..+-+.+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998875 45667777777777789999999999999884 56654 566667788888999
Q ss_pred hHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006343 348 NQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMK 424 (649)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 424 (649)
+.|+..|..-.+.- +..+..|-.|...--+.|.+-.|+.+|++.. +.|...|-..|..-.+.|+.+.|..+..+.+
T Consensus 702 e~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998887665543 3367788999999999999999999999876 4677899999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhH
Q 006343 425 DEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGV 502 (649)
Q Consensus 425 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~ 502 (649)
+. .+.+...|.--|....+.++-......+ ++ .+.|+...-.+..++-...++++|.+.|.+.. ..|| ..+
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kk---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHH---Hh---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 86 4555666666666666666644444333 22 56677778888899999999999999999876 5666 569
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
|.-+..-+..||.-+.-..++.+....+|.+...+...+.
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999999999988877766654
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=9e-11 Score=122.26 Aligned_cols=551 Identities=13% Similarity=0.091 Sum_probs=364.6
Q ss_pred CCcchHHHHHHHHHhCCCChHHHHHHHhh---CCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHH
Q 006343 4 RTSASYNAMITALINNNCSIYEAFEIFAT---MPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALIS 79 (649)
Q Consensus 4 ~~~~~~~~li~~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~ 79 (649)
.+...|-+|-..|-.. |+...+...+=. ....|..-|..+-....+.|++..|.-.|.++++. +++....---..
T Consensus 171 ~~~~ay~tL~~IyEqr-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQR-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred cchhhHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4556789999999999 999999877643 33456678999999999999999999999999887 555444455678
Q ss_pred HHHccCChHHHHHHHHhcccCCh--------hHHHHHHHHHHhCCChhHHHHHhccCCC--C---CcccHHHHHHHHHhc
Q 006343 80 GYLKVGRCEEAARIFEAMVEKDV--------VAWGSMVDGYCKKGRVIEAREIFDKMPE--K---NVVAWTAMVDGYMKV 146 (649)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~ 146 (649)
.|-+.|+...|..-|.++.+.++ ...-..++.|...++-+.|.+.++.... . +...++.++..|.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 88999999999999998875443 1223345677777888999999888764 2 345789999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChh----------------------hH----HHHHHHHhccCChHHHHHHHHHHHHcC--
Q 006343 147 DCFEDGFDLFLSMRRGGMAFNSI----------------------TL----TILFEACGRFFRYREGVQVHGLVSRFG-- 198 (649)
Q Consensus 147 g~~~~A~~~~~~m~~~g~~p~~~----------------------t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g-- 198 (649)
..++.|......+.....++|.. .| .-+.-++.+....+....+...+.+..
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 99999999998887622222211 11 112223345666666677777777766
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHH
Q 006343 199 FDYDIILGNSIITMYGRLGFMDEANKVFSMMSK----RDAVSWNSLISGYVHNGEIEEAYRLFERMPGK---DFVSWTTM 271 (649)
Q Consensus 199 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~l 271 (649)
+..+...+.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|.+++|.+.|++.... +..+-..|
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 444677889999999999999999999999875 36779999999999999999999999998754 34456677
Q ss_pred HHHHHcCCChHHHHHHHhhCCCCChh------------hHHHHHHHHhcCCCHHHHHHHHHHHHHCC-------------
Q 006343 272 ITGFSSKGNLEKSIELFNMMPEKDDV------------TWTAIISGFVNNEQYEEAFRWFIEMLRKD------------- 326 (649)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------- 326 (649)
...+-+.|+.++|.+.+..+..+|.. .-......+.+.|+.++=+..-.+|+..+
T Consensus 490 asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~ 569 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKK 569 (895)
T ss_pred HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 78899999999999999998765411 12334455677787776554444443211
Q ss_pred ---------CCCCHHHHHHHHHHHHccCChhHHHH------HHHHHHHhCCCCcc--cHHHHHHHHHHhcCCHHHHHHHH
Q 006343 327 ---------VRPNQLTLSSVLSASAATATLNQGSQ------IHAHVVKMNMESDV--SIQNSLVSLYSKCGNVVDAYRIF 389 (649)
Q Consensus 327 ---------~~p~~~t~~~ll~~~~~~~~~~~a~~------~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~ 389 (649)
.+-...+...+..+-.+.++...... ........|+..+. ..+.-++..+++.++.++|..+.
T Consensus 570 r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv 649 (895)
T KOG2076|consen 570 RRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVV 649 (895)
T ss_pred HHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11122223333333333333211111 11111222333222 34566777888889999998888
Q ss_pred HhcCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--CCCCHHH-HHHHHHHhhc------------
Q 006343 390 TNIDERNI---------VSYNSMISGFAQNGLGEEALNLFRKMKDE-G--LVPNQIT-FLSVLSACNH------------ 444 (649)
Q Consensus 390 ~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~~~t-~~~ll~a~~~------------ 444 (649)
..+...+. ..-..++.+....+++..|...++.|+.. + ..|.... |+..++....
T Consensus 650 ~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~ 729 (895)
T KOG2076|consen 650 FTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIM 729 (895)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77663211 12345566677788888888888888764 1 1222222 2212221111
Q ss_pred -----------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----------hcCCHHHHHHH
Q 006343 445 -----------------------VGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILG----------RAGSLAEAIDL 490 (649)
Q Consensus 445 -----------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~----------~~g~~~~A~~~ 490 (649)
.+.+..|++++-.... ..|+ +-.--||+-++. |.-.+..+..+
T Consensus 730 ~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 730 RLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455666665544443 4555 444334443332 22233445555
Q ss_pred HHhCC--CCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC------------chHHHHHHHHHhcCCchHHH
Q 006343 491 INSMT--FEP--PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA------------TPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 491 ~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~~~~~g~~~~a~ 554 (649)
+.+.. ..+ ...++.+++.+|..-|=+-.|+..|++++++.|.+. .+-.+|.-+|...|+..-|.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lAr 886 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLAR 886 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHH
Confidence 54332 122 345667789999999999999999999999866432 12356788899999998888
Q ss_pred HHHH
Q 006343 555 RVRM 558 (649)
Q Consensus 555 ~~~~ 558 (649)
.+.+
T Consensus 887 qil~ 890 (895)
T KOG2076|consen 887 QILE 890 (895)
T ss_pred HHHH
Confidence 7543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.6e-15 Score=148.78 Aligned_cols=254 Identities=15% Similarity=0.198 Sum_probs=114.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSS-VLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG 380 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (649)
+...+.+.|++++|++++++......+|+...|-. +...+-..++.+.|...+..+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35566677777777777765544332344444433 333455567777788887777776554 56667777776 6889
Q ss_pred CHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 006343 381 NVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEG-LVPNQITFLSVLSACNHVGLVEEGFIYFKS 457 (649)
Q Consensus 381 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 457 (649)
++++|.+++...- .++...+..++..+...|+++++..++++..... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998887664 3566778888899999999999999999987633 345666777778888999999999999999
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 458 MKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 458 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
..+ ..|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+..|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 988 4675 8888999999999999999888887654 356677899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 535 TPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
.....++.++...|+.++|.++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999977654
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2e-11 Score=116.27 Aligned_cols=437 Identities=14% Similarity=0.142 Sum_probs=264.8
Q ss_pred hhHHHHHhh-cccCCCChhhHHHHHHHHHccCChHHHHHHHHhcccCC----hhHHHHHHH--HHHhCCChhHH-HHHhc
Q 006343 55 YEAEELYVN-MPARWRDSVCSNALISGYLKVGRCEEAARIFEAMVEKD----VVAWGSMVD--GYCKKGRVIEA-REIFD 126 (649)
Q Consensus 55 ~~A~~~~~~-m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~--~~~~~g~~~~A-~~~f~ 126 (649)
.-++..|.- |...+..+.+=+.|++..+ .|.+..+.-+++.|.+.+ +.+.-.|.. .|....++--| .+-|-
T Consensus 99 QP~l~~F~P~~l~~~~~V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv 177 (625)
T KOG4422|consen 99 QPQLPVFRPRHLADPLQVETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFV 177 (625)
T ss_pred CccccccCchhcCCchhhcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence 334555542 3333445556677777664 567777888888876432 223333332 23333333333 34565
Q ss_pred cCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCh
Q 006343 127 KMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDI 203 (649)
Q Consensus 127 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 203 (649)
.|.. ....+| +.|...+ ++-+. .+-+..||.++|.+.++....+.|.++++.......+.+.
T Consensus 178 ~~~~~~E~S~~sW--------K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~ 242 (625)
T KOG4422|consen 178 GMRNFGEDSTSSW--------KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYR 242 (625)
T ss_pred hcccccccccccc--------ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeH
Confidence 6654 455666 3444333 32222 2346789999999999999999999999999888888999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCHHHHH----HHHhhCC----CCChhHHHHH
Q 006343 204 ILGNSIITMYGRLGFMDEANKVFSMMS----KRDAVSWNSLISGYVHNGEIEEAY----RLFERMP----GKDFVSWTTM 271 (649)
Q Consensus 204 ~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~----~~~~~~~~~l 271 (649)
.++|.+|.+-+-.-+ .++..+|. .||..|+|+++++..+-|+++.|. +++.+|+ +|...+|..+
T Consensus 243 ~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 243 EAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred HhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHH
Confidence 999999987654444 44455554 589999999999999999988765 4555665 5788899999
Q ss_pred HHHHHcCCChHH-HHHHHhhCCC------------CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCC-----CCCCH--
Q 006343 272 ITGFSSKGNLEK-SIELFNMMPE------------KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKD-----VRPNQ-- 331 (649)
Q Consensus 272 i~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~-- 331 (649)
|..+.+.++..+ |..++..+.. .+...+...+..|.+..+.+-|.++-.-. +.| +.|+.
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll-~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLL-KTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HcCCchhhcChHHHH
Confidence 998888877644 3333333321 13344555556666666666665543322 222 22321
Q ss_pred -HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 006343 332 -LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQN 410 (649)
Q Consensus 332 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 410 (649)
+-|..++.+.++...++.....|..++-+-.-|+..+...++.+..-.|.++-..+++..+.. |...
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~------------~ght 465 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE------------YGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH------------hhhh
Confidence 234555666666666666666777666666666666666666666666666666665544331 1111
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHhhccCcHHHHHH-HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 006343 411 GLGEEALNLFRKMKDEGLVPNQI---TFLSVLSACNHVGLVEEGFI-YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAE 486 (649)
Q Consensus 411 g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~ 486 (649)
-+.+--++++..|......|+.. -+.....-|+. ++.++.+ .-.++. ...-.....+|+.-++.|.|+.++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHH
Confidence 12233334444444443344322 33333332221 1222221 112222 234556778999999999999999
Q ss_pred HHHHHHhCC-------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006343 487 AIDLINSMT-------FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL 529 (649)
Q Consensus 487 A~~~~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 529 (649)
|.+++.-.. ..|......-|..+....++...|..+++-+.+.
T Consensus 541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 999987552 3344444445666777888888888888887654
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.4e-13 Score=128.80 Aligned_cols=460 Identities=16% Similarity=0.173 Sum_probs=301.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHhhCCCC----Ccc-hHHHHHHHHHhcCChhhHHHHHhhcccCCCCh------hhHHHHH
Q 006343 10 NAMITALINNNCSIYEAFEIFATMPMR----NAV-SYAAMITGFVRRGMFYEAEELYVNMPARWRDS------VCSNALI 78 (649)
Q Consensus 10 ~~li~~~~~~~g~~~~A~~~f~~~~~~----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~ll 78 (649)
..|.+-|... ....+|+..++-+... +.- .--.+-..+.+.+.+.+|++.|+..+...|+. -..+.+-
T Consensus 205 ~nlaqqy~~n-dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 205 FNLAQQYEAN-DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHhhhh-HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3455557666 6778888888766542 221 12234556888999999999998876653332 2344444
Q ss_pred HHHHccCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChhHHHHHhccCCC----CCc--------ccHHHHHHHHH
Q 006343 79 SGYLKVGRCEEAARIFEAMVE--KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE----KNV--------VAWTAMVDGYM 144 (649)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~--------~~~~~li~~~~ 144 (649)
-.+.+.|.++.|...|+...+ |+..+.-.|+-++...|+-++..+.|.+|.. +|. ..-..|+.--.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 556789999999999998874 6666666666677778999999999998863 111 11222332222
Q ss_pred hcC-----------ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCChhhHHHHHH
Q 006343 145 KVD-----------CFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGF--DYDIILGNSIIT 211 (649)
Q Consensus 145 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~ 211 (649)
++. +.++++-.-.++..--+.|+ +..+....-..++... +.-...--.-..
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~----------------fa~g~dwcle~lk~s~~~~la~dlei~ka~ 427 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD----------------FAAGCDWCLESLKASQHAELAIDLEINKAG 427 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc----------------hhcccHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 221 11222222222222222222 1111111111111110 000000111234
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHH----H-HHHHHhc-CCHHHHHHHHhhCCCCCh---hHHHHHHHHHHcCCChH
Q 006343 212 MYGRLGFMDEANKVFSMMSKRDAVSWNS----L-ISGYVHN-GEIEEAYRLFERMPGKDF---VSWTTMITGFSSKGNLE 282 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~ 282 (649)
-|.+.|+++.|.+++.-..++|..+-.+ | ..-|.+- .++..|.+.-+.....|. ...+.-.+.....|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 5788999999999888877655433222 2 2223333 356677776666554333 33333334455689999
Q ss_pred HHHHHHhhCCCCChhhHHH---HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 006343 283 KSIELFNMMPEKDDVTWTA---IISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVK 359 (649)
Q Consensus 283 ~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (649)
+|...+++....|...-.+ +.-.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.++..
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 9999999988876554333 334567789999999999887653 345667788888889999999999998887766
Q ss_pred hCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006343 360 MNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
. ++.|+.+.+.|.+.|-+.|+-..|.+.+-.-- +.|+.+..-|..-|....-+++|+..|++.-- ++|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 4 44588999999999999999999988765433 56777777788888888889999999998765 689999999
Q ss_pred HHHHHh-hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 437 SVLSAC-NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINS 493 (649)
Q Consensus 437 ~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 493 (649)
.++..| .+.|++.+|..+++...+ .++.+.+....|+.+++..|.. +|.++-++
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 888877 578999999999999887 4677899999999998888853 44444443
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.4e-12 Score=121.30 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=170.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006343 344 TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLF 420 (649)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 420 (649)
.|+.-.+..-+..+++.... +...|--+..+|....+.++-.+.|+... +.|+.+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777777788877777655 33346677788899999999999998765 456778888888888888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC
Q 006343 421 RKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP 499 (649)
Q Consensus 421 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~ 499 (649)
++.+... +.+...|..+.-+..+.+.++++...|+..++. ++..++.|+....++..++++++|.+.|+... .+|+
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9998853 334567878877888999999999999999984 55569999999999999999999999998754 4444
Q ss_pred ---------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 500 ---------PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 500 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
+.+.-+++..-. .+++..|+.+++++++++|..-.+|..|+.+-...|+.++|+++++.-
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 223333333333 389999999999999999999999999999999999999999976543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.2e-10 Score=110.76 Aligned_cols=480 Identities=12% Similarity=0.075 Sum_probs=303.7
Q ss_pred HhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHHHHhccc--CC-hhHHHHHHHHHHhCCChhHHHHH
Q 006343 49 VRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARIFEAMVE--KD-VVAWGSMVDGYCKKGRVIEAREI 124 (649)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 124 (649)
..+++...|..+|++.+.. ..+...|..-+.+-.++..+..|+.+++..+. |- ...|-..+.+=-..|++..|+++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456666777788777664 44555566666666777788888888887753 21 12455555555566888888888
Q ss_pred hccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHc-CC-C
Q 006343 125 FDKMP--EKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRF-GF-D 200 (649)
Q Consensus 125 f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~ 200 (649)
|++-. +|+..+|++.|..=.+.+..+.|..+|++.+- +.|+..+|.--.+---+.|....++.++..+++. |- .
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 87754 47888888888888888888888888888765 3477777777766666777777777777777653 21 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 006343 201 YDIILGNSIITMYGRLGFMDEANKVFSMMSK----R-DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGF 275 (649)
Q Consensus 201 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 275 (649)
.+..++++....=.++..++.|.-+|.-..+ . ....|..+..---+-|+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g----------------------- 298 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG----------------------- 298 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh-----------------------
Confidence 1233444444444555666666666543322 1 11222222222222333222
Q ss_pred HcCCChHHHHHH-----HhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH
Q 006343 276 SSKGNLEKSIEL-----FNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL-------TLSSVLSA 340 (649)
Q Consensus 276 ~~~g~~~~A~~~-----~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~ 340 (649)
+++++.- ++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+
T Consensus 299 -----IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 299 -----IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred -----hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH
Confidence 2222211 1222222 3445666666666667777777777777764 444221 11111111
Q ss_pred H---HccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcC
Q 006343 341 S---AATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYS----KCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNG 411 (649)
Q Consensus 341 ~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 411 (649)
| ....+.+.++++++..++. ++....++.-+--+|+ ++.++..|++++.... .|-..+|...|..-.+.+
T Consensus 373 lyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 1 2456777777888777763 3334555555555554 5788888888888765 466667777888888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 412 LGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
+++.+..++++.++-+ +.|-.++......=...|+.+.|..+|+-+++...+......|-+.|+.=...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999998864 455677777766667789999999999988875444444566777888888999999999999
Q ss_pred HhCC-CCCChhHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHhc----cCCCCCc--hHHHHHHHHHhcC
Q 006343 492 NSMT-FEPPPGVWGALLGAGR-----THL-----------NLDLAKLAAQHLME----LEPDSAT--PYVVLSDLYSVIG 548 (649)
Q Consensus 492 ~~~~-~~~~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~~~~~g 548 (649)
+.+. ..+...+|-++..--. ..+ ++..|..+++++.. ..|.... .+-..-+.-...|
T Consensus 531 erlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 531 ERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred HHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 9876 4556668887775433 334 56788888888876 3332221 2223334445567
Q ss_pred CchHHHHHHHHHh
Q 006343 549 KKRDGNRVRMKKK 561 (649)
Q Consensus 549 ~~~~a~~~~~~~~ 561 (649)
.-.+...+.+.|-
T Consensus 611 ~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 611 TEGDVERVQSKMP 623 (677)
T ss_pred chhhHHHHHHhcc
Confidence 7667776766663
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=2.5e-10 Score=118.41 Aligned_cols=537 Identities=11% Similarity=0.076 Sum_probs=294.4
Q ss_pred CCCcchHHHHHHHHHhCCCChHHHHHHHhhCCCCC----cchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHH
Q 006343 3 DRTSASYNAMITALINNNCSIYEAFEIFATMPMRN----AVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALI 78 (649)
Q Consensus 3 ~~~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll 78 (649)
.|+.++|.+||..|+.. |+.+.|- +|.-|..++ ...++.++.+..+.++.+.+. .|.+.+|..|+
T Consensus 22 ~PnRvtyqsLiarYc~~-gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTK-GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------EPLADTYTNLL 90 (1088)
T ss_pred CCchhhHHHHHHHHccc-CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------CCchhHHHHHH
Confidence 58889999999999999 9999999 888876543 334666666666666655553 26666777777
Q ss_pred HHHHccCChHH---HHHHHHhccc-------------------------CChh----------HHHHHHHHHHhC-----
Q 006343 79 SGYLKVGRCEE---AARIFEAMVE-------------------------KDVV----------AWGSMVDGYCKK----- 115 (649)
Q Consensus 79 ~~~~~~~~~~~---a~~~~~~~~~-------------------------~~~~----------~~~~li~~~~~~----- 115 (649)
.+|...||+.. ..+.+..+.. ||.. .|..++....++
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 77777766543 2221111110 1110 122222222111
Q ss_pred ---------------CChhHHHHHhccCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 006343 116 ---------------GRVIEAREIFDKMP-EKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACG 179 (649)
Q Consensus 116 ---------------g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 179 (649)
..+++-........ .++..++..++.+-.-+|+.+.|..++.+|.+.|++.+..-|-.+|-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 01111111111111 267788888888888999999999999999999999888877777655
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH-----------hhC-------------------
Q 006343 180 RFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVF-----------SMM------------------- 229 (649)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~-----------~~~------------------- 229 (649)
.++......+..-|...|+.|+..++...+--+.++|....+.... ..+
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 7788888889999999999999888876665555544322221110 000
Q ss_pred ---CC-------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHcCCCh-----------
Q 006343 230 ---SK-------RDAVSWNSLISGYVHNGEIEEAYRLFERMPGK-------DFVSWTTMITGFSSKGNL----------- 281 (649)
Q Consensus 230 ---~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~----------- 281 (649)
++ .....|. ++.-...+|.-++..++...+..| ++..+..++.-|.+.-+.
T Consensus 328 ~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 00 0112222 222233356666666666665532 233444444443332111
Q ss_pred -----------HHHHHHHhhCCCCCh-----------------hhH-----------HHHHHHHhcCCCHHHHHHHHHHH
Q 006343 282 -----------EKSIELFNMMPEKDD-----------------VTW-----------TAIISGFVNNEQYEEAFRWFIEM 322 (649)
Q Consensus 282 -----------~~A~~~~~~~~~~~~-----------------~~~-----------~~li~~~~~~g~~~~A~~~~~~m 322 (649)
....++.... .||. .+| +.++-.++..-+..+++..-+..
T Consensus 407 gls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 407 GLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111 011 11111222222222222211111
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHh--CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C
Q 006343 323 LRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKM--NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----R 395 (649)
Q Consensus 323 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 395 (649)
... .-| ..|..++.-|.....++.|..+.+++... .+..|...+..+.+...+.+...++.+++.++.+ +
T Consensus 486 e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 111 111 34566666777777777777777655433 2344666677778888888888888888877763 1
Q ss_pred C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH------------------------------HHHHHHH---
Q 006343 396 N-IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQIT------------------------------FLSVLSA--- 441 (649)
Q Consensus 396 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------------------------------~~~ll~a--- 441 (649)
+ ..+.--+..+.+..|+.+..-++++-+...|+..+... ...+.+.
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 22344455666777887777777777777766431110 0011111
Q ss_pred ------------------hhccCcHHHHHHHHHHhHHhcCC---------------CC---------ChhHHHHHHHHHH
Q 006343 442 ------------------CNHVGLVEEGFIYFKSMKTLYNI---------------EP---------GPEHYACMVDILG 479 (649)
Q Consensus 442 ------------------~~~~g~~~~a~~~~~~~~~~~~~---------------~p---------~~~~~~~l~~~l~ 479 (649)
+.+.|.+.++..+.+ ..|+ .| +..+..-|...|.
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~ 718 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYL 718 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHH
Confidence 111122222221111 0111 11 0112233666788
Q ss_pred hcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCCchH-
Q 006343 480 RAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHL---NLDLAKLAAQHLMELEPDSATP---YVVLSDLYSVIGKKRD- 552 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~- 552 (649)
+.|+++.|..++.++++.|+......|+..++.+. ++-++...-+++-++.|..+.+ |.-.+. .+.+++..+
T Consensus 719 ~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~-~a~q~~qkka 797 (1088)
T KOG4318|consen 719 EEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAF-FATQTEQKKA 797 (1088)
T ss_pred hhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHH-HHhhHHHHHH
Confidence 99999999999999998888888888888887554 5667777777777766544433 333333 344555554
Q ss_pred HHHHHHHHhhC
Q 006343 553 GNRVRMKKKLK 563 (649)
Q Consensus 553 a~~~~~~~~~~ 563 (649)
|.+.....++.
T Consensus 798 Akk~f~r~eeq 808 (1088)
T KOG4318|consen 798 AKKCFERLEEQ 808 (1088)
T ss_pred HHHHHHHHHHc
Confidence 44466666554
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.1e-11 Score=127.20 Aligned_cols=242 Identities=9% Similarity=0.037 Sum_probs=127.8
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006343 307 VNNEQYEEAFRWFIEMLRKDVRPNQLTLS--SVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVD 384 (649)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (649)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...++.+.+..+. ++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555542 33332221 2233445555555555555555555433 44555555666666666666
Q ss_pred HHHHHHhcCCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 006343 385 AYRIFTNIDERNI-----------VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 385 A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 453 (649)
|.+++..+.+... ..|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6655555542111 12222232223333344444444444322 23345555666666666666666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 454 YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
.++...+ ..|+.... ++......|+.+++.+.+++.. ..|+ +.....+...|...+++++|...++++++..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666554 23443221 1122223466666666666544 2333 44555666667777777777777777777777
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 532 DSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
+...+..|+.++.+.|+.++|.+.++
T Consensus 360 -~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 360 -DAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556667777777777777766443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.6e-10 Score=111.46 Aligned_cols=352 Identities=14% Similarity=0.097 Sum_probs=206.6
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHH
Q 006343 100 KDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSI--TLTILFEA 177 (649)
Q Consensus 100 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a 177 (649)
.|.+..-...-.+-+.|....|+..|......-+..|.+-+....-..+.+.+..+ . .|...|.. .=-.+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHH
Confidence 45555555556667788888898888877765455555443322222222222221 1 12222211 11223455
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCHH
Q 006343 178 CGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKR------DAVSWNSLISGYVHNGEIE 251 (649)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 251 (649)
+......+++.+-.......|++.+...-+....++-...++|.|+.+|+++.+. |..+|+.++-.--.+.+..
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5566677888888888888888888777777777777888999999999988764 4455655543322211111
Q ss_pred -HHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 006343 252 -EAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDV 327 (649)
Q Consensus 252 -~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 327 (649)
-|..++ .+.+--+.|...+.+-|+-.++.++|...|++..+- ...+|+.|..-|+...+...|++-|+..++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---
Confidence 111111 122223344445555555566666666666655542 234566666666666666666666655554
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHH
Q 006343 328 RPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMI 404 (649)
Q Consensus 328 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 404 (649)
.++. |-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|.
T Consensus 393 --------------------------------i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 393 --------------------------------INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred --------------------------------cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3222 44555566666666666666666666544 45677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhc---C-CCC-ChhHHHHHHHHHH
Q 006343 405 SGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLY---N-IEP-GPEHYACMVDILG 479 (649)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~-~~p-~~~~~~~l~~~l~ 479 (649)
.+|.+.++.++|++.|.+....| ..+...+..|...+-+.++.++|.++|+..++.. | +.| ......-|..-+.
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 77777777777777777777665 3455677777777777777777777777665532 1 222 1333333555666
Q ss_pred hcCCHHHHHHHHHhC
Q 006343 480 RAGSLAEAIDLINSM 494 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~ 494 (649)
+.+++++|.......
T Consensus 519 k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 519 KMKDFDEASYYATLV 533 (559)
T ss_pred hhcchHHHHHHHHHH
Confidence 777777777655543
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=8.4e-09 Score=103.66 Aligned_cols=503 Identities=14% Similarity=0.199 Sum_probs=298.3
Q ss_pred cchHHHHHHHHHhCCCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHH
Q 006343 6 SASYNAMITALINNNCSIYEAFEIFATMPM-----RNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISG 80 (649)
Q Consensus 6 ~~~~~~li~~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~ 80 (649)
+..|-..+....++ |++..-++.|++..+ .....|.-.+......|-++-++.+|++-++..| ..-.--|.-
T Consensus 102 pRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 44566677777888 999999999987543 2344699999999999999999999999888533 335666777
Q ss_pred HHccCChHHHHHHHHhccc----------CChhHHHHHHHHHHhCCCh---hHHHHHhccCCC--CC--cccHHHHHHHH
Q 006343 81 YLKVGRCEEAARIFEAMVE----------KDVVAWGSMVDGYCKKGRV---IEAREIFDKMPE--KN--VVAWTAMVDGY 143 (649)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~--~~--~~~~~~li~~~ 143 (649)
+++.+++++|.+.+..++. ++...|.-+-+..++.-+. -....++..+.. +| ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 8899999999999988763 2444566666666654332 233445555544 33 34799999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHh--cCCHH
Q 006343 144 MKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVS-RFGFDYDIILGNSIITMYGR--LGFMD 220 (649)
Q Consensus 144 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~y~~--~g~~~ 220 (649)
.+.|.+++|..+|++....- .+..-|..+..+|+.......+..+- ... +.|-+-+......-+..+-. .+..-
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999887642 23344566666666543322222111 011 11111111111000000000 00111
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--ChhHHHHHHHHHHcCCChHHHHHHHhhC
Q 006343 221 EANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP-------GK--DFVSWTTMITGFSSKGNLEKSIELFNMM 291 (649)
Q Consensus 221 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (649)
-.-.++-+-...++..|..-... ..|+..+-...|.+.. .+ -...|..+.+.|-..|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11111111112244555544443 3455555555554432 11 1246778888888888888888888887
Q ss_pred CCCC-------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHccCCh
Q 006343 292 PEKD-------DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVR----------P-------NQLTLSSVLSASAATATL 347 (649)
Q Consensus 292 ~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~~~~ 347 (649)
.+-+ ...|..-...-.++.+++.|+++.+......-. | +...|+..+..-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 7532 235666666666777888888877766532111 1 112334444444556777
Q ss_pred hHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCh-HHHHHHHHHHHh---cCCHHHHHHH
Q 006343 348 NQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID----ERNI-VSYNSMISGFAQ---NGLGEEALNL 419 (649)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~ 419 (649)
+..+.+++.+++..+. ++.+.....-.+-...-++++.+++++-. -|++ ..|+..+.-+.+ ....+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888888888887665 34333334444555667788888888755 2444 367776665554 2357888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHh--hccCcHHHHHHHHHHhHH--------------------hcCCCCChhHHHHHH--
Q 006343 420 FRKMKDEGLVPNQITFLSVLSAC--NHVGLVEEGFIYFKSMKT--------------------LYNIEPGPEHYACMV-- 475 (649)
Q Consensus 420 ~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~--------------------~~~~~p~~~~~~~l~-- 475 (649)
|++.++ |.+|...-+.-|+-|- -.-|....|+.++++... .+|+.-+...|..-|
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 888888 6666654433333221 233666666666655332 244444444443322
Q ss_pred --------------HHHHhcCCHHHHHHHHHhCC--CCC--ChhHHHHHHHHHHhcCChhH
Q 006343 476 --------------DILGRAGSLAEAIDLINSMT--FEP--PPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 476 --------------~~l~~~g~~~~A~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~ 518 (649)
++=.+.|.++.|..++.-.. .+| +...|.+.=.--.+|||-+.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 23356788888888887543 234 45678777777778998443
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-10 Score=115.46 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=204.9
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVS 374 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 374 (649)
++........-+...+++.+.+++++...+.. ++....+..-|.++...|+...-..+-..+++.-+. .+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44445555666777889999999999888753 455555555566777777777766666677776544 6788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHH
Q 006343 375 LYSKCGNVVDAYRIFTNIDERN---IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 451 (649)
-|.-.|+.++|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-....+.-+.--|.+.+..+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999876433 458999999999999999999998887764 233334445555568889999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC----ChhHHHHHHHHHHhcCChhHHHH
Q 006343 452 FIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-----FEP----PPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
.++|.+... +-|+ +..++-+.-+.-..+.+.+|..+|+... ..+ =..+|+.|+.+|++.+.+++|+.
T Consensus 400 e~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999998875 6674 7777778777778899999999988654 111 23467889999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHH
Q 006343 522 AAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKK 560 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 560 (649)
.+++++.+.|.++.+|..++.+|...|+.+.|+. +-+.+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 44444
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.4e-12 Score=128.64 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=214.1
Q ss_pred ChHHHHHHHhhCCCC--C-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChhHHHH
Q 006343 280 NLEKSIELFNMMPEK--D-DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRP----NQLTLSSVLSASAATATLNQGSQ 352 (649)
Q Consensus 280 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~ 352 (649)
+..+|...|..+++. | ......+..+|...+++++|.++|+.+.+. .| +...|+++|--+-+. .+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHHH
Confidence 567888888886642 3 345567788999999999999999999874 33 345666666543221 1222
Q ss_pred HHH-HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006343 353 IHA-HVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDER---NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGL 428 (649)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 428 (649)
.+. .+++.. +..+.+|.++.+.|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 222 333333 337889999999999999999999999998754 4568888888888999999999999998753
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHH
Q 006343 429 VPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWG 504 (649)
Q Consensus 429 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~ 504 (649)
.|. ...|.++...|.+.++++.|.-.|+.+.. +.|. .....+++..+.+.|+.++|+++++++. . +.|+..-.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 343 34677788889999999999999998886 7885 7777888999999999999999999875 3 44555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.-+..+...++.++|.+.++++.++-|+++..|.+++.+|-..|+.+.|..-+..+-+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6667777889999999999999999999999999999999999999999986655544
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.1e-10 Score=119.90 Aligned_cols=281 Identities=10% Similarity=0.008 Sum_probs=171.0
Q ss_pred cCCHHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHH--HHHHHHHcCCChHHHHHHH
Q 006343 216 LGFMDEANKVFSMMSKR--DA-VSWNSLISGYVHNGEIEEAYRLFERMPGK--DFVSWT--TMITGFSSKGNLEKSIELF 288 (649)
Q Consensus 216 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~--~li~~~~~~g~~~~A~~~~ 288 (649)
.|+++.|++.+....+. ++ ..+........+.|+++.|...|.++.+. +..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666555544332 11 12222222234555555555555555432 211111 1234445555555555555
Q ss_pred hhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc
Q 006343 289 NMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESD 365 (649)
Q Consensus 289 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (649)
+++.+. +......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------------------- 228 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------------------- 228 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------------------
Confidence 544431 3334444555555555555555555555544322111 000000
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC 442 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 442 (649)
..++..++....+..+.+...++++.++ +.++.....+..++...|+.++|.+++++..+. +||.... ++.+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 0122233333344455666777777765 357778888899999999999999999988874 4554221 23333
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
...++.+++.+..+...+. .+-|+..+.++..++.+.|++++|.+.|+.+. ..|+...+..|...+...|+.++|..
T Consensus 305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4558999999999888873 33357788899999999999999999999876 67998888889999999999999999
Q ss_pred HHHHHhccC
Q 006343 522 AAQHLMELE 530 (649)
Q Consensus 522 ~~~~~~~~~ 530 (649)
++++.+.+-
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999988754
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-10 Score=111.49 Aligned_cols=320 Identities=12% Similarity=0.064 Sum_probs=212.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhH-HHHHHHHhcCCC
Q 006343 233 DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTW-TAIISGFVNNEQ 311 (649)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~ 311 (649)
|...+-.....+.+.|....|++.|......-+..|.+-+....-..+.+.+..+-..++..+...- -.+..++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 3333333334455566666677666666554455555544444444455555544444443322211 123345555567
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCC--CcccHHHHHHHHHHhcCCHHH-HHHH
Q 006343 312 YEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNME--SDVSIQNSLVSLYSKCGNVVD-AYRI 388 (649)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A~~~ 388 (649)
.+++++-.......|++-+...-+....+.-...++++|..+|+.+.+..+- .|..+|+.++-.-..+..+.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 7778777777777776555544444455556677888888888888887542 255666665533333223322 2222
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-
Q 006343 389 FTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP- 466 (649)
Q Consensus 389 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 466 (649)
+ .+.+--+.|...+.+-|...++.++|+..|++.++. .|. ...|+.+..-|....+...|++-++.+++ +.|
T Consensus 323 ~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~ 396 (559)
T KOG1155|consen 323 S-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPR 396 (559)
T ss_pred H-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCch
Confidence 2 233344556667777788888888888888888875 344 34555555677888888888888888876 556
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
|-..|-.|+.+|.-.+...-|+-+|++.. . +.|...|.+|+..|.+.++.++|++.+++++...-.+..+|+.|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 57778888888888888888888888876 3 446778999999999999999999999999988777888899999999
Q ss_pred HhcCCchHHHHHHH
Q 006343 545 SVIGKKRDGNRVRM 558 (649)
Q Consensus 545 ~~~g~~~~a~~~~~ 558 (649)
...++.++|....+
T Consensus 477 e~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 477 EELKDLNEAAQYYE 490 (559)
T ss_pred HHHHhHHHHHHHHH
Confidence 99999999988443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=6.6e-12 Score=126.64 Aligned_cols=246 Identities=12% Similarity=0.070 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHHHHH
Q 006343 310 EQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNM--ESDVSIQNSLVSLYSKCGNVVDAYR 387 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (649)
-+..+|+..|...... +.-.......+-.+|...++.++++.+|+.+.+..+ .-+..+|.+.+--+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999994443 344456777888999999999999999999888643 2366777777655443322222222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC
Q 006343 388 IFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVP-NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP 466 (649)
Q Consensus 388 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 466 (649)
-+-.+.+..+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+.... .
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 233334567889999999999999999999999999984 56 567777777777778899999999987654 6
Q ss_pred ChhHHHH---HHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 467 GPEHYAC---MVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 467 ~~~~~~~---l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
++.||++ |+-.|.++++++.|+-.|+++. +.|. .++...++..+.+.|+.|+|++.+++++.++|.++-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6777766 5667999999999999999876 6665 556677778888999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhhC
Q 006343 542 DLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
.++...+++++|....+.+++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.4e-09 Score=103.67 Aligned_cols=432 Identities=9% Similarity=0.067 Sum_probs=305.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 104 AWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 104 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
.|-...+.=-..+++..|+.+|++... ++...|-..+..=.++.+...|..++++.+..-...|..-|. .+..--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHH
Confidence 343333444445667777788877664 566677777777777788888888887776543233332222 2222345
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMS--KRDAVSWNSLISGYVHNGEIEEAYRLFE 258 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 258 (649)
.|++..|+++|..-.+ ..|+...|++.|++=.+-..++.|+.++++.. .|++.+|--...--.++|+..-|..+|+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6788888888877665 46888888888888888888888888888754 5788888887777788888888888877
Q ss_pred hCCC------CChhHHHHHHHHHHcCCChHHHHHHHhhCCC----C-ChhhHHHHHHHHhcCCCHHH---HHHH-----H
Q 006343 259 RMPG------KDFVSWTTMITGFSSKGNLEKSIELFNMMPE----K-DDVTWTAIISGFVNNEQYEE---AFRW-----F 319 (649)
Q Consensus 259 ~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~---A~~~-----~ 319 (649)
...+ .+...+.+...--.++..++.|.-+|+-... . ....|......--+-|+... ++-- |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 6553 1234556666666678888888888765443 2 23344444444445555443 3222 3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcc-cHHHHHHHH--------HHhcCCHHHHHHHHH
Q 006343 320 IEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDV-SIQNSLVSL--------YSKCGNVVDAYRIFT 390 (649)
Q Consensus 320 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~A~~~~~ 390 (649)
+.++..+ +-|-.++--.+..-...|+.+..+++++.++..-++... ..|...|-. -....+++.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444432 456677888888888889999999999998876544222 122222211 124678999999998
Q ss_pred hcC---CCChHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 391 NID---ERNIVS----YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 391 ~~~---~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
... +....| |-....--.++.+...|.+++...+ |.-|-..+|...|..=.+.+.+|....+++....
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--- 465 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--- 465 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence 765 333344 4444455567889999999998876 4679999999999999999999999999999987
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 464 IEP-GPEHYACMVDILGRAGSLAEAIDLINSMTFEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 464 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
..| +..+|.....+=...|+.+.|..+|+-+..+|. ...|.+.+.--...|.++.|..+++++++..+ +...++
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWi 544 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWI 544 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHH
Confidence 566 578888888888899999999999997765553 45777777777789999999999999999988 555788
Q ss_pred HHHHHHH
Q 006343 539 VLSDLYS 545 (649)
Q Consensus 539 ~l~~~~~ 545 (649)
..+..-+
T Consensus 545 sFA~fe~ 551 (677)
T KOG1915|consen 545 SFAKFEA 551 (677)
T ss_pred hHHHHhc
Confidence 7777655
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=2.3e-10 Score=118.14 Aligned_cols=276 Identities=11% Similarity=0.033 Sum_probs=145.1
Q ss_pred cCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHcCCChHHHHHHHhhCCC--CCh--hhHHHHHHHHhcCCCHHHHHHHH
Q 006343 247 NGEIEEAYRLFERMPG--KDF-VSWTTMITGFSSKGNLEKSIELFNMMPE--KDD--VTWTAIISGFVNNEQYEEAFRWF 319 (649)
Q Consensus 247 ~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~ 319 (649)
.|+++.|.+.+.+..+ +++ ..+-....++.+.|+.+.|...+.+..+ |+. ...-.....+.+.|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555444332 111 1122223444445555555555554322 111 12222345555566666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccH-------HHHHHHHHHhcCCHHHHHHHHHhc
Q 006343 320 IEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSI-------QNSLVSLYSKCGNVVDAYRIFTNI 392 (649)
Q Consensus 320 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 392 (649)
+.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.... +..++..-......+...+.++..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6665542 11333455555555666666666666665555543322211 111111111222334444555555
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhhccCcHHHHHHHHHHhHHhcCCCC
Q 006343 393 DE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITF---LSVLSACNHVGLVEEGFIYFKSMKTLYNIEP 466 (649)
Q Consensus 393 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 466 (649)
+. .+...+..++..+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+. .|
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p 330 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VD 330 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CC
Confidence 42 46777777888888888888888888888775 3443321 11111223346666676666666652 33
Q ss_pred C-h--hHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 467 G-P--EHYACMVDILGRAGSLAEAIDLINS--M-TFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 467 ~-~--~~~~~l~~~l~~~g~~~~A~~~~~~--~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+ + ....+++.++.+.|++++|.+.|+. . ...|+...+..+...+...|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3 4555667777777777777777762 2 2456666666666667777777777777776554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=6.5e-13 Score=130.25 Aligned_cols=249 Identities=15% Similarity=0.166 Sum_probs=96.1
Q ss_pred HHHHHcCCChHHHHHHHhhC-CC----CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 006343 272 ITGFSSKGNLEKSIELFNMM-PE----KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT 346 (649)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 346 (649)
..++.+.|++++|.+++++. .. .+...|..+.......++.+.|+..++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555556666666655322 11 23444555555555666666666666666654321 33334444444 45666
Q ss_pred hhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006343 347 LNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-----ERNIVSYNSMISGFAQNGLGEEALNLFR 421 (649)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (649)
+++|..+.....+.. +++..+..++..+.+.|+++++..+++.+. +.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655444332 344555667777777788888777777643 3466677788888888888888888888
Q ss_pred HHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC
Q 006343 422 KMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEP 498 (649)
Q Consensus 422 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~ 498 (649)
+.++. .|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...+++.. .+.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 88875 454 556677777888888888888888877763 24556777788888888888888888888765 334
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 499 PPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 499 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
|+.+...+..++...|+.++|..+.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566667777888888888888888887765
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=2.3e-10 Score=118.14 Aligned_cols=278 Identities=11% Similarity=0.018 Sum_probs=202.7
Q ss_pred HHcCCChHHHHHHHhhCCCC--C-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhH
Q 006343 275 FSSKGNLEKSIELFNMMPEK--D-DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL--TLSSVLSASAATATLNQ 349 (649)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~ 349 (649)
....|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.++|.+..+. .|+.. ............|+.+.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 35689999999999887653 2 334555567788899999999999998774 35442 33345677788999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHH----HHHHHHHhcCCHHHHHHHHHH
Q 006343 350 GSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDER---NIVSYN----SMISGFAQNGLGEEALNLFRK 422 (649)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 422 (649)
|...++.+.+..+. ++.+...+..+|...|++++|.+.+....+. +...+. ....++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998765 6678889999999999999999999988742 333332 111222333444444556666
Q ss_pred HHHcCC---CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCC-
Q 006343 423 MKDEGL---VPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEH---YACMVDILGRAGSLAEAIDLINSMT- 495 (649)
Q Consensus 423 m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~l~~~g~~~~A~~~~~~~~- 495 (649)
+.+... +.+...+..+...+...|+.++|.+.++...+. .|+... .....-.....++.+++.+.+++..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 655421 136777888888999999999999999998873 454331 1112222234577888888887754
Q ss_pred CCCC-h--hHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 496 FEPP-P--GVWGALLGAGRTHLNLDLAKLAAQ--HLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 496 ~~~~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
..|+ + ....+++..|.+.|++++|.+.++ .+++..| ++..+..++.++.+.|+.++|.++++.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444 4 566789999999999999999999 5778899 555577999999999999999996654
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.7e-10 Score=105.14 Aligned_cols=303 Identities=12% Similarity=0.145 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHhhCCCCChhH---HHHHHHHHHcCCChHHHHHHHhhCCCC-Ch------hhHHHHHHHHhcCCCHHHHH
Q 006343 247 NGEIEEAYRLFERMPGKDFVS---WTTMITGFSSKGNLEKSIELFNMMPEK-DD------VTWTAIISGFVNNEQYEEAF 316 (649)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~ 316 (649)
+.+.++|.++|-+|.+.|+.+ --+|.+.|.+.|..+.|+++.+.+.+. |. .+...|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 345555555555555444433 244556666666666666666655442 21 23344555666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcc----cHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006343 317 RWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDV----SIQNSLVSLYSKCGNVVDAYRIFTNI 392 (649)
Q Consensus 317 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (649)
.+|..+.+.| .--......++..|-...++++|+.+-..+.+.+..+.. ..|..|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777766643 222334555666666666666666666666655543321 23344444455556666666666655
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChh
Q 006343 393 DE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPE 469 (649)
Q Consensus 393 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 469 (649)
.+ ..+..--.+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+ ..++..
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCcc
Confidence 42 233333444555666666666666666666653222233445555566666666666666666555 234444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-hCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 470 HYACMVDILGRAGSLAEAIDLIN-SMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
.-..+.+......-.++|...+. .+...|+...+..|+..-.. =+..|
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~-------------------------------daeeg 332 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA-------------------------------DAEEG 332 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc-------------------------------ccccc
Confidence 33344443333333333333322 23334444433333332110 01235
Q ss_pred CchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEe
Q 006343 549 KKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFL 584 (649)
Q Consensus 549 ~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~ 584 (649)
++.+...+.+.|-...++..|-+.+-.-+-+.|.|.
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 577777755566666677778777777777777765
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.3e-11 Score=113.41 Aligned_cols=197 Identities=13% Similarity=0.038 Sum_probs=165.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
....+..+...|...|++++|...|++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35567778889999999999999998765 3456788889999999999999999999998864 4455677778888
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLA 519 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a 519 (649)
+...|++++|..+|+..............+..+...+.+.|++++|.+.+++.. ..| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999988732222345677888999999999999999998865 334 466788888899999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 520 KLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898888999999999999999999998776654
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.5e-09 Score=100.17 Aligned_cols=220 Identities=11% Similarity=0.057 Sum_probs=175.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006343 305 GFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVD 384 (649)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (649)
-+.-.|+.-.|...|+..+.....++.. |..+..+|....+.++....|..+.+.++. ++.+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 3455788899999999999865444332 777777889999999999999999998876 78888889999999999999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 006343 385 AYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTL 461 (649)
Q Consensus 385 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 461 (649)
|..-|++... .++..|-.+..+..+.+++++++..|++.++. ++.-...|+.....+...++++.|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999998773 45667777777778889999999999999886 455567888888899999999999999999886
Q ss_pred cCCCCC-------hh--HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 462 YNIEPG-------PE--HYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 462 ~~~~p~-------~~--~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
+.|+ +. +.-.++ .+.-.+++..|.+++++.. ..|. ...+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5554 11 111111 1223489999999999876 5554 5688899999999999999999999988754
Q ss_pred C
Q 006343 531 P 531 (649)
Q Consensus 531 p 531 (649)
-
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 4
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-08 Score=96.45 Aligned_cols=268 Identities=9% Similarity=-0.016 Sum_probs=173.9
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhh---HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006343 264 DFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVT---WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSA 340 (649)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 340 (649)
|+....++.+.+...|+.++|+..|++...-|+.+ .....-.+.+.|+.++...+...+.... +-....|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 44455555555555555555555555544332222 1122223345555555555555444321 1111111111122
Q ss_pred HHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHH
Q 006343 341 SAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEAL 417 (649)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 417 (649)
.-...+.+.|..+-+..++.+.. +...+-.-...+...|+.++|.-.|+... +-+..+|.-|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 22334445555554444444332 23333333456667788999888888755 457889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 418 NLFRKMKDEGLVPNQITFLSVL-SACN-HVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 418 ~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
-+-+..... ++.+..++..+. ..|. ....-++|.+++++..+ +.|+ ...-..+..++.+.|+.+++..+++..
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888876664 345556655552 3332 33445789999888775 7887 667788999999999999999999986
Q ss_pred C-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 006343 495 T-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 495 ~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (649)
. ..||....+.|....+..+.+++|...|..++.++|++..+.
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 6 789999999999999999999999999999999999765543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.9e-09 Score=102.65 Aligned_cols=275 Identities=15% Similarity=0.125 Sum_probs=160.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHH
Q 006343 199 FDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRD---AVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMI 272 (649)
Q Consensus 199 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 272 (649)
...++.+.....+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.++.+ ....+|-++.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455566666677777788888888877776533 33455556667777776555544444443 2446777777
Q ss_pred HHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 006343 273 TGFSSKGNLEKSIELFNMMPEKD---DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLTLSSVLSASAATATLN 348 (649)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 348 (649)
--|.-.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..|...-+. .|. ..-+.-+---|.+.++++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence 77777778888888877766533 346777777777777777777777766552 111 111111222244445555
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 006343 349 QGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE-- 426 (649)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 426 (649)
.|.+++.++....+. |+.+.+- +.-.....+.+.+|..+|+..+..
T Consensus 398 LAe~Ff~~A~ai~P~-Dplv~~E-------------------------------lgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPS-DPLVLHE-------------------------------LGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHHHHhcCCC-cchhhhh-------------------------------hhheeehHhhhHHHHHHHHHHHHHhh
Confidence 555555544443322 4444444 444444445555555555554421
Q ss_pred CC----CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh
Q 006343 427 GL----VPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPG 501 (649)
Q Consensus 427 g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~ 501 (649)
.+ .--..+++.|..+|.+.+.+++|+..|+.... -.+.+..+++.++-.|...|+++.|.+.|.+.. ..|+..
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 00 01234566666677777777777777776665 123356677777777777777777777776654 566665
Q ss_pred HHHHHHHH
Q 006343 502 VWGALLGA 509 (649)
Q Consensus 502 ~~~~ll~~ 509 (649)
+...+++.
T Consensus 524 ~~~~lL~~ 531 (611)
T KOG1173|consen 524 FISELLKL 531 (611)
T ss_pred HHHHHHHH
Confidence 55555553
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.3e-08 Score=99.84 Aligned_cols=437 Identities=11% Similarity=0.148 Sum_probs=230.8
Q ss_pred HHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHHHHhcccCChhHHHH--HHHHH--HhCCChh
Q 006343 45 ITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARIFEAMVEKDVVAWGS--MVDGY--CKKGRVI 119 (649)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~~~--~~~g~~~ 119 (649)
++.+...|++++|.....++... +.+...+..-+-+..+.+.+++|..+.+.-...+ +++. +=.+| .+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHH
Confidence 44455667777777777777665 3445556666666677777777775555432111 1111 23333 3567777
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 006343 120 EAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAF-NSITLTILFEACGRFFRYREGVQVHGLVSRFG 198 (649)
Q Consensus 120 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 198 (649)
+|+..++...+.+..+-..-...+-+.|++++|+.+|+.+.+.+..- +...-..++.+-.
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------------------- 157 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------------------- 157 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------------------
Confidence 77777764444444344445556666777777777777776554321 1111111111100
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH---HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 006343 199 FDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNS---LISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGF 275 (649)
Q Consensus 199 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 275 (649)
.-.+. +.+..+.....+|.. ....++..|++.+|+++++...
T Consensus 158 --------------------~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~-------------- 202 (652)
T KOG2376|consen 158 --------------------ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL-------------- 202 (652)
T ss_pred --------------------hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH--------------
Confidence 00111 222222222222222 2233455666666666665431
Q ss_pred HcCCChHHHHHHHhhC-CC-----CCh-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHH
Q 006343 276 SSKGNLEKSIELFNMM-PE-----KDD-----VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSV---LSAS 341 (649)
Q Consensus 276 ~~~g~~~~A~~~~~~~-~~-----~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~ 341 (649)
++..+- .. .+. ..--.|.-.+...|+..+|..+|...++.. .+|....... |.+.
T Consensus 203 ----------~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 203 ----------RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL 271 (652)
T ss_pred ----------HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh
Confidence 000000 00 000 011223344555677777777777666653 3333221111 1111
Q ss_pred HccCChhH--------------HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHHHH
Q 006343 342 AATATLNQ--------------GSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERN-IVSYNSMISG 406 (649)
Q Consensus 342 ~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~ 406 (649)
....++-. +......+.+. -......-+.++.+|. +..+.+++.-...+... ...+.+++..
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~ 348 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQE 348 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHH
Confidence 11111111 00000011100 0001122244555554 56677888877777433 3344444433
Q ss_pred HH--hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcHHHHHHHHH--------HhHHhcCCCCChhHHHHH
Q 006343 407 FA--QNGLGEEALNLFRKMKDEGLVPNQ--ITFLSVLSACNHVGLVEEGFIYFK--------SMKTLYNIEPGPEHYACM 474 (649)
Q Consensus 407 ~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l 474 (649)
.. +...+..|.+++...-+. .|.. +.....+......|+++.|.+++. .+.+ +.-.+.+-..+
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~ai 423 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAI 423 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHH
Confidence 22 223477888888777665 3443 445555566788999999999998 4443 33445666778
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 475 VDILGRAGSLAEAIDLINSMT--------FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
+.++.+.+..+-|..++.+.. ..+. ..+|.-+...-.++|+.++|...++++++.+|++....+.+.-+|+
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 999999888777766665543 1221 2233334444457899999999999999999999999999999998
Q ss_pred hcCCchHHHHHH
Q 006343 546 VIGKKRDGNRVR 557 (649)
Q Consensus 546 ~~g~~~~a~~~~ 557 (649)
.. +.+.|..+-
T Consensus 504 ~~-d~eka~~l~ 514 (652)
T KOG2376|consen 504 RL-DPEKAESLS 514 (652)
T ss_pred hc-CHHHHHHHh
Confidence 74 445555544
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.3e-09 Score=96.75 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=78.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCCHHHH
Q 006343 146 VDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGF-DYD--IILGNSIITMYGRLGFMDEA 222 (649)
Q Consensus 146 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~--~~~~~~l~~~y~~~g~~~~A 222 (649)
++++++|.++|-+|.+.. +-+..+-.++-+-+.+.|..+.|..+|+.+.++.- ..+ ......|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887731 11223445566667778888888888888876531 111 23445677778888888888
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006343 223 NKVFSMMSKRD---AVSWNSLISGYVHNGEIEEAYRLFERMPG 262 (649)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 262 (649)
+.+|..+.+.. ..+...|+..|-...+|++|++.-+++..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888877632 34566677778888888887777665543
No 58
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.5e-07 Score=99.13 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=125.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMV 475 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (649)
.+..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++...+++ .-+|..+ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999887542 46678999999999999999999999777663 4556554 5789
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 476 DILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
-+|++.+++.|-++++. .|+.......+.-|...|.++.|.-++. +.+.|..|+..+-..|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 4788888889999999999999988887 55678888888888888888877
Q ss_pred HHHHHhhCCCccCCceeEEE
Q 006343 556 VRMKKKLKRIRKSPGCSWII 575 (649)
Q Consensus 556 ~~~~~~~~~~~~~~g~s~i~ 575 (649)
--+........|+.+..+|+
T Consensus 1242 ~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1242 AARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred HhhhccchhHHHHHHHHHhc
Confidence 43333333344554444443
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=3.4e-09 Score=101.12 Aligned_cols=251 Identities=12% Similarity=0.114 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK 378 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (649)
|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+...|..-...+.+.++. .+.+.......|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 33333444444555555555555444211222333333333444445555555554444444433 33444445555555
Q ss_pred cCCHHHHHHHHHhcCCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 379 CGNVVDAYRIFTNIDERNI-----------VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
.|++.....++.++.+... .+|+.++.-....+..+.-...++..-.. .+-+...-.+++.-+...|+
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence 5555555555555543211 24444444433333333333333333222 23344444455555556666
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH----HHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 006343 448 VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAI----DLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAA 523 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~----~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 523 (649)
.++|.++.+...+. +..|+.. .++ ...+-|+...=. ..++..+ .++..+.+|+..|.+++.+.+|..++
T Consensus 279 ~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 279 HDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred hHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666655555442 3334311 111 112223322222 2222222 23356667777777777777777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 524 QHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
+.+++..| +...|..++.++.+.|+..+|..+++.
T Consensus 352 eaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 352 EAALKLRP-SASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 77777777 666677777777777777777775543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=8.6e-07 Score=89.62 Aligned_cols=485 Identities=12% Similarity=0.142 Sum_probs=263.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHhccc-----CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 006343 74 SNALISGYLKVGRCEEAARIFEAMVE-----KDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDC 148 (649)
Q Consensus 74 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 148 (649)
|..-+....++|++...+..|+..+. ....+|...+......|-++-+..++++-.+-++..-+-.|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 33444444555555555555554432 1223455555555555555555555555554444445555555555555
Q ss_pred hhHHHHHHHHHHhC------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CC--hhhHHHHHHHHHhcCC
Q 006343 149 FEDGFDLFLSMRRG------GMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFD--YD--IILGNSIITMYGRLGF 218 (649)
Q Consensus 149 ~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~l~~~y~~~g~ 218 (649)
+++|-+.+...+.. ..+.+...|.-+..-.++..+.-....+ +.+++.|+. +| ...|++|.+.|.+.|.
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 55555555544321 1223333444444444433333222222 122222321 22 3567778888888888
Q ss_pred HHHHHHHHhhCCCC--ChhhHHHHHHHHHhc----------------CC------HHHHHHHHhhCCC------------
Q 006343 219 MDEANKVFSMMSKR--DAVSWNSLISGYVHN----------------GE------IEEAYRLFERMPG------------ 262 (649)
Q Consensus 219 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~------------ 262 (649)
++.|..+|++.... .+.-++.+-++|++- |+ ++-.+..|+.+..
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 88888877665431 222233333333321 11 1112222332221
Q ss_pred ---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC---C------ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 006343 263 ---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE---K------DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN 330 (649)
Q Consensus 263 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (649)
.++..|..-+..+ .|+..+-...|.+..+ | -...|..+.+.|-.+|+.+.|..+|++..+...+--
T Consensus 344 Qn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred cCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 1223333333322 3444555555554432 1 234688999999999999999999999876432211
Q ss_pred ---HHHHHHHHHHHHccCChhHHHHHHHHHHHhCC-----------CC------cccHHHHHHHHHHhcCCHHHHHHHHH
Q 006343 331 ---QLTLSSVLSASAATATLNQGSQIHAHVVKMNM-----------ES------DVSIQNSLVSLYSKCGNVVDAYRIFT 390 (649)
Q Consensus 331 ---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (649)
..+|..-...=.+..+++.|..+.+.+....- ++ +..+|.-+++.--.+|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12233223333345566677766665432211 11 23345555666667788888888888
Q ss_pred hcCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHh---hccCcHHHHHHHHHHhHHhcC
Q 006343 391 NIDERNIVSY---NSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-ITFLSVLSAC---NHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 391 ~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~ 463 (649)
++.+--+.|= -.....+-.+.-++++.+.|++-+..=-.|+. ..|+..|.-+ .....++.|+.+|++..+ +
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--G 579 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--c
Confidence 8774222221 11222334567788999988876664223443 2344444433 334579999999999998 6
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch-
Q 006343 464 IEPG--PEHYACMVDILGRAGSLAEAIDLINSMTF--EPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP- 536 (649)
Q Consensus 464 ~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 536 (649)
.+|. ...|-....+=-+-|....|++++++... ++. -..|+..+.-....=-+..-..+++++++.-|++..-
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 6664 33344444444567999999999998762 222 2367766654443333556678899999988854332
Q ss_pred -HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 537 -YVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 537 -~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
....+.+-.+.|..|.|+.+...-.+.
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 345667777889999988877655543
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=9.3e-12 Score=85.56 Aligned_cols=50 Identities=30% Similarity=0.600 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 131 KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.3e-09 Score=116.95 Aligned_cols=244 Identities=11% Similarity=0.029 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH---------ccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006343 310 EQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASA---------ATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC 379 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (649)
+..++|+.+|++.++. .|+.. .+..+..++. ..++.++|...+..+++.++. +..++..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 3457899999998874 56543 3444333332 234478899999988888765 677888888899999
Q ss_pred CCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCcHHHHHHHH
Q 006343 380 GNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGLVEEGFIYF 455 (649)
Q Consensus 380 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 455 (649)
|++++|...|++.. +.+...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 345668888999999999999999999999986 45432 3334444566789999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 456 KSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP-GVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 456 ~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
+.+... ..|+ +..+..+..+|...|+.++|.+.++++. ..|+. ..++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988762 3454 6667888999999999999999998865 44543 34555656666666 4788888887773333
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 533 SATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.+.....+..+|+-.|+-+.+..+++..++
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 333334488889999999988888444443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=2.1e-07 Score=96.03 Aligned_cols=359 Identities=13% Similarity=0.119 Sum_probs=249.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----hhHHH
Q 006343 198 GFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKD-----FVSWT 269 (649)
Q Consensus 198 g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~ 269 (649)
.+.-|..+|..|.-....+|++..+.+.|++... .....|+.+...|...|....|+.+++.-..+. +..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556888899999999999999999999998765 356689999999999999999999998876432 33333
Q ss_pred HHHHHHHc-CCChHHHHHHHhhCCC--------CChhhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHCC-CC
Q 006343 270 TMITGFSS-KGNLEKSIELFNMMPE--------KDDVTWTAIISGFVNN-----------EQYEEAFRWFIEMLRKD-VR 328 (649)
Q Consensus 270 ~li~~~~~-~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~ 328 (649)
..-..|.+ .+.+++++..-.++.. .....|..+.-+|... -...++++.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33334433 4556665555444332 1344555555555321 23457888899888753 34
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------
Q 006343 329 PNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--RN---------- 396 (649)
Q Consensus 329 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---------- 396 (649)
|+...|.++- ++..++++.|.+...+..+.+...++..|..|.-.+...+++.+|+.+.+.... ++
T Consensus 478 p~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 5555554444 556788999999999999987777899999999999999999999998776541 11
Q ss_pred -----------hHHHHHHHHHHH-----------------------hcCCHHHHHHHHHHHH--------HcC-------
Q 006343 397 -----------IVSYNSMISGFA-----------------------QNGLGEEALNLFRKMK--------DEG------- 427 (649)
Q Consensus 397 -----------~~~~~~li~~~~-----------------------~~g~~~~A~~~~~~m~--------~~g------- 427 (649)
..+...++..+- ..++..+|.+..+++. ..|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 111111211111 0112222222222111 011
Q ss_pred --CC--CCH------HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 006343 428 --LV--PNQ------ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT- 495 (649)
Q Consensus 428 --~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~- 495 (649)
+. |+. ..+......+...+..++|...+.+..+ +.| ....|...+..+...|.+.||.+.|....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 121 1233444566778888888877777665 445 47778888899999999999999988765
Q ss_pred CCCC-hhHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 496 FEPP-PGVWGALLGAGRTHLNLDLAKL--AAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 496 ~~~~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
..|+ +.+..++...+...|+...|.. .+..+++++|.++.+|..|+.+....|+.++|.+.+...-
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 6676 5678889999999999888888 9999999999999999999999999999999999655443
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=8.8e-09 Score=107.20 Aligned_cols=413 Identities=11% Similarity=0.063 Sum_probs=243.3
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 006343 130 EKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSI 209 (649)
Q Consensus 130 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 209 (649)
.||-+||..+|.-|+..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.++ .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 477789999999999999988888 8888887777778888888888877777776665 6778899999
Q ss_pred HHHHHhcCCHHH---HHHHHhhCCC---------C-------------ChhhHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 006343 210 ITMYGRLGFMDE---ANKVFSMMSK---------R-------------DAVSWNSLISGYVHNGEIEEAYRLFERMP--- 261 (649)
Q Consensus 210 ~~~y~~~g~~~~---A~~~~~~~~~---------~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 261 (649)
...|...||+.. .++.+..+.. + ....-.+.+......|.++.+++++..+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998655 2221111110 0 11112345555667788888888886665
Q ss_pred -------------------------------CCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHH
Q 006343 262 -------------------------------GKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK----DDVTWTAIISGF 306 (649)
Q Consensus 262 -------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 306 (649)
.+++.++.++++.-...|+++.|..++.+|.++ ...-|-.|+-+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 245566666666666677777777777776654 22222223322
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH-----------HHHHHHH----------------
Q 006343 307 VNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQ-----------IHAHVVK---------------- 359 (649)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-----------~~~~~~~---------------- 359 (649)
.++..-+..+++-|.+.|+.|+..|+...+..|.+.|....+.. +...+..
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 56666666666677777777777777766666666443221111 0000000
Q ss_pred ---------hCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChHHHHHHHHHHHhcCC-----------
Q 006343 360 ---------MNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-------RNIVSYNSMISGFAQNGL----------- 412 (649)
Q Consensus 360 ---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----------- 412 (649)
.|+.....+|...+. ...+|.-+...++-..+.. .++..+..++.-|.+.-+
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 022212222221111 1123444444444444331 233334443333332111
Q ss_pred -----------HHHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHhhccCcHHHHHH
Q 006343 413 -----------GEEALNLFRKMKDEGLVPNQI----------------------------TFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 413 -----------~~~A~~~~~~m~~~g~~p~~~----------------------------t~~~ll~a~~~~g~~~~a~~ 453 (649)
..+..++... ..||.. .-+.++.+|...-+..++..
T Consensus 406 qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~ 480 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC 480 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 122211 11222233333333333332
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 454 YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-----FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
.-+.... + .- ...|..|++.+.+..+.++|..+.++.. +.-|...+..+.....+++....+..+.++..+
T Consensus 481 ~~ekye~-~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 481 DEEKYED-L-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHH-H-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 2222221 1 11 2668999999999999999999999876 233445667788888899999999888888776
Q ss_pred ---cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 006343 529 ---LEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRK 567 (649)
Q Consensus 529 ---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (649)
..|.......-+.|--+..|+.+...++.+.+...|+..
T Consensus 557 ~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 557 SAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 444445666777788888999999988999998888765
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.5e-08 Score=96.73 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=191.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006343 146 VDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKV 225 (649)
Q Consensus 146 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~ 225 (649)
.|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+.+..+.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766655333 3345555566667777777777777777765566666777777777788888877766
Q ss_pred HhhCC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHcCCChHHHHHHHhhC
Q 006343 226 FSMMS---KRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDF-----------VSWTTMITGFSSKGNLEKSIELFNMM 291 (649)
Q Consensus 226 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (649)
.++.. .+++........+|.+.|++.....++.++.+... .+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 65543 45777778888888888888888888887764321 35667776666666666666677777
Q ss_pred CC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccH
Q 006343 292 PE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSI 368 (649)
Q Consensus 292 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 368 (649)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++...-.+..+.-.+..+. ++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhH
Confidence 64 3566677788888899999999999999888877776 22233455666666666666544443322 4477
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.+.+++....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7778888888888888888887655 467777888888888888888877777776543
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.7e-07 Score=87.77 Aligned_cols=271 Identities=10% Similarity=0.050 Sum_probs=118.8
Q ss_pred HhCCChhHHHHHhccCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 006343 113 CKKGRVIEAREIFDKMPEK------NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYRE 186 (649)
Q Consensus 113 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 186 (649)
....++..|+.+++.-..- ++..| +..++.+.|++++|+..+..+.+.. .|+......+..+.--.|.+.+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3445666776666544321 11122 3345566677777777776665532 3344444444333334455555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-
Q 006343 187 GVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDF- 265 (649)
Q Consensus 187 a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 265 (649)
|+++-....+ ++---..|...-.+.|+-++-..+-+.+.+.. .---++.+..-..-.+.+|++++.++...+.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5555433211 12222334444555565555444444433211 1222333333344456666666666654332
Q ss_pred -hHHHH-HHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006343 266 -VSWTT-MITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSA 340 (649)
Q Consensus 266 -~~~~~-li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 340 (649)
...|. +.-+|.+..-++-+.++++--.+ .+.++-|.......+.=....|.+-..++...+-.. |.-.-..
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f~~~l 259 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPFIEYL 259 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chhHHHH
Confidence 22222 22344555555555544443221 233344444433333222222333333333322110 0000000
Q ss_pred HH----ccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHH
Q 006343 341 SA----ATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSY 400 (649)
Q Consensus 341 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (649)
|. --..-+.|.+++--+.+.- +..--.|+--|.+.|++.+|..+.+.+.+..+.-|
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Ey 319 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEY 319 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCCChHHH
Confidence 10 0112233333333222211 12223355567888888888888888776554433
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.9e-09 Score=110.27 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=139.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCH-
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDE--------R---NIVSYNSMISGFAQNGLGEEALNLFRKMKD-----EGLV-PNQ- 432 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~- 432 (649)
.+..+|...+++++|..+|+++.. . -..+++.|..+|...|++++|...+++..+ .|.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 455667777777777777776541 1 123667777778888888887777776543 1222 222
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC--C----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C--C
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP--G----PEHYACMVDILGRAGSLAEAIDLINSMT-------F--E 497 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-------~--~ 497 (649)
.-++.+...|...+.+++|..+++...+.+.-.| + ..+++.|..+|...|+++||+++++++. . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2355666778999999999999988776544222 2 5679999999999999999999999864 1 2
Q ss_pred CC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCC---CchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 498 PP-PGVWGALLGAGRTHLNLDLAKLAAQHLME----LEPDS---ATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 498 ~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
+. ...++.|..+|...++.+.|.+.|.+... ..|++ ..+|.+|+-+|...|++++|.++....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22 44677889999999999999999888776 34444 566889999999999999999966554
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=4.4e-11 Score=82.19 Aligned_cols=50 Identities=36% Similarity=0.699 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 006343 395 RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNH 444 (649)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 444 (649)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-07 Score=89.54 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006343 309 NEQYEEAFRWFIEMLRKD-VRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYR 387 (649)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (649)
.++...|..++-.+.... ++-|...+..+...+...|+..++...|+...-.++. +........-.+.+.|+.++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 344444444443333322 2333344445555555555555555555544433221 11111111112233444444444
Q ss_pred HHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 388 IFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 388 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
+-..+. +.....|-.-.......++++.|+.+-.+-++. .|+ ...+..-..++...|++++|.-.|+....
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--- 362 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--- 362 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHh---
Confidence 433332 122233433344444455555555555555543 222 22232223344555555555555555543
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHH-HHHH-hcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 464 IEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALL-GAGR-THLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 464 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
+.| +.+.|.-|+..|...|++.||.-+-+..- ++.++.+...++ ..|. ...--|+|...+++.+.++|...++-+
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 444 35555555555555555555554433211 123333333221 1222 222235555555555555555555555
Q ss_pred HHHHHHHhcCCchHHHH-HHHHHhhCCCccCCceeEEEECCEE-----------EEEeeCCCCCCCHHHHHHHHHHHHHh
Q 006343 539 VLSDLYSVIGKKRDGNR-VRMKKKLKRIRKSPGCSWIILKDKV-----------HLFLAGRKSCLDLKEIEVTLQTISKG 606 (649)
Q Consensus 539 ~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~g~s~i~~~~~~-----------~~f~~~d~~hp~~~~i~~~l~~l~~~ 606 (649)
.++.++...|+.++++. +++.++.. |.++.-.+.|.+ ..|...=+..|+.+.-...++.|.++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIF-----PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhc-----cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 55555555555555555 33333321 222111111110 01122223468888888889999998
Q ss_pred hhhcC
Q 006343 607 TKEFD 611 (649)
Q Consensus 607 ~~~~~ 611 (649)
+++..
T Consensus 518 ~~~~D 522 (564)
T KOG1174|consen 518 DDESD 522 (564)
T ss_pred cCCCC
Confidence 88543
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=1.3e-07 Score=96.47 Aligned_cols=464 Identities=15% Similarity=0.151 Sum_probs=274.8
Q ss_pred HhcCChhhHHHHHhhcccCCCChh-hHHHHHH-------------HHHccCChHHHHHHHHhccc------------CCh
Q 006343 49 VRRGMFYEAEELYVNMPARWRDSV-CSNALIS-------------GYLKVGRCEEAARIFEAMVE------------KDV 102 (649)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~-------------~~~~~~~~~~a~~~~~~~~~------------~~~ 102 (649)
...|+++.|...++....- |+.. .|..+.. +++..|++.+++.+++...- .+-
T Consensus 455 id~~df~ra~afles~~~~-~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred cccCchHHHHHHHHhhccC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 3466777777766655432 3333 2333333 33344555555555553310 122
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 006343 103 VAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFF 182 (649)
Q Consensus 103 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 182 (649)
+-..+++.+.. .++.+|..+|-+- | .-..-|..|....++++|+.+-+- .|.+.-...-.+.++++...|
T Consensus 534 ykvra~lail~--kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 534 YKVRAMLAILE--KKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred HHHHHHHHHHH--hhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcC
Confidence 22233333332 3567777776431 1 122345556666677777766432 222222222334455555555
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh--hCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 183 RYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFS--MMSKRDAVSWNSLISGYVHNGEIEEAYRLFERM 260 (649)
Q Consensus 183 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 260 (649)
+-+.|-++ +.+..-.-+-|..|.+.|..-.|.+... +....|......+..++.+..-+++|-.+|+++
T Consensus 604 qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 604 QDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred chhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 55444332 1111122356788999999888776542 223356666777777888888888888888877
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhh-HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006343 261 PGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVT-WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLS 339 (649)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 339 (649)
..++. .+..|-+..-+-+|.++-+-.-...+++ -......+.+.|+++.|+..|-+... ....+.
T Consensus 675 ~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaie 740 (1636)
T KOG3616|consen 675 HDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIE 740 (1636)
T ss_pred hCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHH
Confidence 65443 2233333333445555444332222222 23344566777888888777765432 122344
Q ss_pred HHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006343 340 ASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNL 419 (649)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (649)
+......+.+|..++..+...... ..-|..+.+-|+..|+++.|.++|.+.. .++--|..|.+.|++..|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 555566778888888877665432 3345667788889999999999887543 455667888899999998887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 006343 420 FRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPP 499 (649)
Q Consensus 420 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 499 (649)
-.+.. |.......|..-..-.-..|++.+|.+++-.+. .|+. -+.+|-+.|..++.+.+.++-.-+.-
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 65543 323334455555555677888888888764322 3443 46788899999999988887652222
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeE
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSW 573 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~ 573 (649)
..+...+..-+-..|++..|+..+-++ +-+..-.|+|...+.|++|-++-+.--..+..|...+-|
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 446667777788889999888877644 335567889999999999988765543334444444444
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=1.2e-06 Score=89.65 Aligned_cols=491 Identities=17% Similarity=0.144 Sum_probs=271.7
Q ss_pred HHHHHhCCCChHHHHHHHhhCCCCCcc-hHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHH
Q 006343 13 ITALINNNCSIYEAFEIFATMPMRNAV-SYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAA 91 (649)
Q Consensus 13 i~~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~ 91 (649)
|.+|... .++++|..+-+....|... .-.+-++++...|+-++|-++-. .+.. -.+.|+.|.+.|.+..|.
T Consensus 564 igmy~~l-hkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~------sdgd-~laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 564 IGMYQEL-HKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE------SDGD-GLAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHHH-HhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc------ccCc-cHHHHHHHHHcCCchHHH
Confidence 4444444 4555555554433333211 11233444445555555543321 1222 235678888888877765
Q ss_pred HHHH--hcccCChhHHHHHHHH-------------HHhCCChhHHHHHhccCCC------------C-CcccH-HHHHHH
Q 006343 92 RIFE--AMVEKDVVAWGSMVDG-------------YCKKGRVIEAREIFDKMPE------------K-NVVAW-TAMVDG 142 (649)
Q Consensus 92 ~~~~--~~~~~~~~~~~~li~~-------------~~~~g~~~~A~~~f~~~~~------------~-~~~~~-~~li~~ 142 (649)
.... ..+..|......+..+ |-+..++++|.+.|.+-.. | .++.. ..-..-
T Consensus 636 ~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~h 715 (1636)
T KOG3616|consen 636 RAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDH 715 (1636)
T ss_pred HhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHH
Confidence 5432 1222333333333333 3333344445444443210 1 11110 011223
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 006343 143 YMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEA 222 (649)
Q Consensus 143 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A 222 (649)
+.+.|+++.|+..|-+.. .....+.+......|..|..+.+.+...... ..-|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHH
Confidence 345566666666654432 1233455566777888888888887765432 23456678889999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--hHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHH
Q 006343 223 NKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDF--VSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWT 300 (649)
Q Consensus 223 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 300 (649)
+++|.+.. .++.-|..|.+.|++++|.++-.+...|.. ..|.+-..-.-+.|++.+|.+++-.+..|+.
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~---- 855 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK---- 855 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH----
Confidence 99997654 356678889999999999999888877644 4555556667788999999999888877764
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG 380 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (649)
.|..|-+.|..+..+++..+-.... -..|...+..-+...|++..|..-|-... -|.+-++||..++
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhh
Confidence 4667788888888887776543211 12355566667777888888887665432 2567889999999
Q ss_pred CHHHHHHHHHhcCCCCh-----HHHHHH------HHHHHhcCCH-------------HHHHHHHHHHHHcCCCCCHHHHH
Q 006343 381 NVVDAYRIFTNIDERNI-----VSYNSM------ISGFAQNGLG-------------EEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 381 ~~~~A~~~~~~~~~~~~-----~~~~~l------i~~~~~~g~~-------------~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
-+++|.++-+.--..|. ..|.-- +..+-++|.. +-|.++-+-..+.. .|.. ..
T Consensus 923 lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hl 999 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HL 999 (1636)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hh
Confidence 99999988765432222 233221 2223333333 33333333332221 1211 12
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHh--cCC-----CCChhHH---------HHHHHHHHhcCCHHHHHHHHHhCCCCCC-
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTL--YNI-----EPGPEHY---------ACMVDILGRAGSLAEAIDLINSMTFEPP- 499 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~--~~~-----~p~~~~~---------~~l~~~l~~~g~~~~A~~~~~~~~~~~~- 499 (649)
.+..-+...|++++|-+.+-...+. |++ .|+..-. ..-+.++.+..++..|..+-+.-. ||
T Consensus 1000 k~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~ 1077 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDL 1077 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhh
Confidence 2333355678888887766655542 111 1111000 012334445555555555444322 22
Q ss_pred -hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 500 -PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 500 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
+.++.--..+....|++.+|+-.+-++ ..|+ ...+-|...+.|.+|.++-
T Consensus 1078 l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~ 1128 (1636)
T KOG3616|consen 1078 LADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIA 1128 (1636)
T ss_pred hHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHH
Confidence 223333333444567777766554333 2342 3456678889999998853
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.1e-08 Score=97.43 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+....+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 4467777777888888888888887776642 12233344444444444555555555444444322
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCcHHHHHHH
Q 006343 376 YSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVP-NQITFLSVLSACNHVGLVEEGFIY 454 (649)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 454 (649)
.+...+..+...+...|++++|.+.|++.......| ....+..+..++...|++++|...
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 233445555555556666666666666655432112 223444455556666666666666
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 455 FKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 455 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
|+.... ..| +...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.+.|....+.+.+..
T Consensus 158 ~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666655 223 34556666666667777777776666543 22334455555556666677777777666665543
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=1.1e-07 Score=100.36 Aligned_cols=525 Identities=13% Similarity=0.101 Sum_probs=261.8
Q ss_pred ChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHHHHhc
Q 006343 22 SIYEAFEIFATMPMRNA---VSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARIFEAM 97 (649)
Q Consensus 22 ~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 97 (649)
+...|...|-+..+.|+ ..|..|...|+..-+...|.+.|+...+. ..+......+...|++..+++.|..+.-..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45666666665555443 35888888887777888888888888776 455666777888888888888888874332
Q ss_pred ccCC-----hhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 006343 98 VEKD-----VVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSI 169 (649)
Q Consensus 98 ~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 169 (649)
-+.+ ...|-...-.|.+.++...|+.-|+...+ .|..+|..+..+|.+.|.+..|++.|.+... +.|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s- 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS- 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-
Confidence 2221 12233345566777888888888877664 4666888888888888888888888887765 34543
Q ss_pred hHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCHHHHHHHHhhCCC---------
Q 006343 170 TLTILFEA--CGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYG-------RLGFMDEANKVFSMMSK--------- 231 (649)
Q Consensus 170 t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~-------~~g~~~~A~~~~~~~~~--------- 231 (649)
+|.....+ -+..|.+.++...++.++..- ..-....+.|...+. ..|-...|...|+.-.+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222222 245677777777777665431 001111222222222 22323333333332211
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHhhCC-----------------------------------------CCChhHH
Q 006343 232 --RDAVSWNSLISGYVHNGEIEEAYRLFERMP-----------------------------------------GKDFVSW 268 (649)
Q Consensus 232 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------------~~~~~~~ 268 (649)
.+...|-.+-++ ..+|.+.. ..+..+|
T Consensus 709 ~~~~~~~Wi~asda----------c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDA----------CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred hhhhHHHHHHHhHH----------HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 112222222211 11222211 0112233
Q ss_pred HHHHHHHHc----CC----ChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006343 269 TTMITGFSS----KG----NLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSV 337 (649)
Q Consensus 269 ~~li~~~~~----~g----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 337 (649)
..|+..|.+ +| +...|...+.+..+ .+..+||.|.-. ...|.+.-|...|-+-.... +-+..+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecc
Confidence 333322222 11 12234444443322 344455544433 33344444444444333321 2233344444
Q ss_pred HHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHh
Q 006343 338 LSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID--------ERNIVSYNSMISGFAQ 409 (649)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~ 409 (649)
--.|....+++.|...+.......+. +...|-.........|+.-++..+|..-. -++..-|-....-..+
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 44444555555555555555444332 22222222222233444444444444311 1233333333333444
Q ss_pred cCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHH
Q 006343 410 NGLGEEALNLFRKMKD---------EGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYA----CMVD 476 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~ 476 (649)
+|+.++-+..-++.-. .|.+.+...|........|.+.+..|.+...+...-...+-+...|+ ....
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gR 1015 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGR 1015 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 5554444333222211 12233445566666666666666666655555433222222333333 3445
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH---HHHHHHhcCCchHH
Q 006343 477 ILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV---LSDLYSVIGKKRDG 553 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~a 553 (649)
++...|.++.|..-+...+.+.+..+.+.-+.. .-.|+++.+...+++++.+--++...-++ ++.....++.-+.|
T Consensus 1016 L~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1016 LELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred hhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHH
Confidence 555667777666666555544444444433333 44677888888888888765544443333 33334445566666
Q ss_pred HH-HHHHHhhCC
Q 006343 554 NR-VRMKKKLKR 564 (649)
Q Consensus 554 ~~-~~~~~~~~~ 564 (649)
.. +.+.....+
T Consensus 1095 ~~lLfe~~~ls~ 1106 (1238)
T KOG1127|consen 1095 QFLLFEVKSLSK 1106 (1238)
T ss_pred HHHHHHHHHhCc
Confidence 66 555554433
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=6.7e-09 Score=102.05 Aligned_cols=208 Identities=13% Similarity=0.031 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHHhCC-C--CcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006343 346 TLNQGSQIHAHVVKMNM-E--SDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNL 419 (649)
Q Consensus 346 ~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (649)
..+.+..-+.+++.... . .....+..+...|.+.|+.++|...|++.. +.+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555553221 1 223456677777888888888888887765 34567888888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 006343 420 FRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEP 498 (649)
Q Consensus 420 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 498 (649)
|++.++. .|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++.....
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888874 454 45666777777888888888888888776 45543222222233456677888888886533111
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 499 PPGVWGALLGAGRTHLNLDLAKLAAQHLM-------ELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 499 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
++..|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|....+..
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2223331 2222234554433 2333333 455666778888888888888888888844433
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.2e-07 Score=86.03 Aligned_cols=433 Identities=13% Similarity=0.129 Sum_probs=268.8
Q ss_pred CChHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHH
Q 006343 21 CSIYEAFEIFATMPM------RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARI 93 (649)
Q Consensus 21 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~ 93 (649)
.++..|+.+++--.. .++..| +.-++...|++++|+..|..+... .++...+..|.-.+.-.|.+.+|.++
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 588999988874432 122334 345778899999999999886554 66677676677666778999999998
Q ss_pred HHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006343 94 FEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTI 173 (649)
Q Consensus 94 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 173 (649)
-.+..+ ++.....|.+.-.+.|+-++-..+-+.+.+.. .---+|.+..-..-.+.+|++++.+....+ |+-...+.
T Consensus 114 ~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNV 189 (557)
T KOG3785|consen 114 AEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNV 189 (557)
T ss_pred HhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHH
Confidence 887643 34445556667777777666665555554321 222334444444456889999998887652 44444444
Q ss_pred HHHHH-hccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCHHHHH--HHHhhCCCCChhhHHHHHHHHHhc-
Q 006343 174 LFEAC-GRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGR--LGFMDEAN--KVFSMMSKRDAVSWNSLISGYVHN- 247 (649)
Q Consensus 174 ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~--~g~~~~A~--~~~~~~~~~~~~~~~~li~~~~~~- 247 (649)
-+..| .+..-++.+.+++..-++. ++.++...|..+....+ .|+..+++ .+-+...+. | ..+.-.+++
T Consensus 190 y~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHN 263 (557)
T KOG3785|consen 190 YMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHN 263 (557)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcC
Confidence 44444 5667777788887777664 23344555555444443 34433222 222222211 1 112222222
Q ss_pred ----CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcC-------CCHHHHH
Q 006343 248 ----GEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNN-------EQYEEAF 316 (649)
Q Consensus 248 ----g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~A~ 316 (649)
.+-+.|++++-.+...=+..-..|+--|.+.+++.+|..+.+.+....+.-|-.-.-.++.. .+..-|.
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 34567777776666555556666777788899999999888887765443332222222222 3345566
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006343 317 RWFIEMLRKDVRPNQL-TLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDER 395 (649)
Q Consensus 317 ~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (649)
+.|+-.-..+..-|.. .-.++.+++.-.-.++.....+..+...-...|...+ .+..+++..|...+|+++|-.+..+
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 6665544444332221 1223334444445667777666666555444455444 4788999999999999999988854
Q ss_pred ---ChHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 006343 396 ---NIVSYNSM-ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVL-SACNHVGLVEEGFIYFKSMKTLYNIEPGPEH 470 (649)
Q Consensus 396 ---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 470 (649)
|..+|.++ ..+|.+.+.++-|.+++-++. -+.+..+...+| +-|.+.+.+=-|-+.|+.+.. ..|+++.
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEn 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPEN 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccc
Confidence 55666554 678999999999988765543 234455554444 578899998888888988776 7888887
Q ss_pred HH
Q 006343 471 YA 472 (649)
Q Consensus 471 ~~ 472 (649)
|.
T Consensus 497 We 498 (557)
T KOG3785|consen 497 WE 498 (557)
T ss_pred cC
Confidence 74
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.7e-09 Score=97.65 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=141.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC 379 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (649)
+.|..+|.+.|.+.+|.+.|+..+.. .|-..||..+-++|.+......|..++..-++.-+ -++.........+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ea- 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEA- 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHH-
Confidence 55777788888888888887777765 44445555555555555555555555554444321 133333333344444
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 380 GNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
.++.++|+++|+...+.. +.+.....++...|...++++-|+.+++++.
T Consensus 303 ------------------------------m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 303 ------------------------------MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ------------------------------HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 444555555555544431 2233333344444444555555555555554
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT---FEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
+- | .-+++.|..+.-.|.-++++|-++.-|+... ..|+ ..+|.+|.......||+..|.+.++-++.-+|++.
T Consensus 352 qm-G-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-G-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-c-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 41 2 1344455555555555555555555554433 1233 55898888888899999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 535 TPYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
.++++|+-+-.+.|+.++|..+....++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999988877753
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=6.3e-09 Score=111.76 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=162.3
Q ss_pred CChhHHHHHHHHHHHhCCCCcccHHHHHHHHHH---------hcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCC
Q 006343 345 ATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYS---------KCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGL 412 (649)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 412 (649)
+++++|...++++++..+. +...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467888899988887654 4455666655544 2345889999998876 4567788889899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 413 GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 413 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
+++|+..|++..+.+ +.+...+..+..++...|++++|...++.+.+ +.|+ ...+..+...+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999863 33455677788889999999999999999987 5675 333344555677789999999999
Q ss_pred HhCC--CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 492 NSMT--FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 492 ~~~~--~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
++.. .+|+ +..+..+..++...|+.++|+..++++....|.+......++..|...| ++|.. +++..+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8864 2354 4456677777889999999999999999999988888888888888888 47777 444333
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=6e-09 Score=92.16 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDI 477 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 477 (649)
+...+.-+|.+.|+...|..-+++.++.. +.+..++..+...|...|..+.|.+.|+...+ +.|+ .++.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34566778999999999999999999863 44466888888889999999999999999887 6675 8889999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 006343 478 LGRAGSLAEAIDLINSMTFEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (649)
+|..|++++|...|+.....|. ..+|.+++.+..+.|+.+.|+..+++.++++|+.+.+...++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998764443 558888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 006343 554 NRVRMKKKLKRI 565 (649)
Q Consensus 554 ~~~~~~~~~~~~ 565 (649)
.-+.+....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 998777766543
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.5e-09 Score=100.16 Aligned_cols=235 Identities=14% Similarity=0.086 Sum_probs=171.9
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCC--CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 006343 269 TTMITGFSSKGNLEKSIELFNMMPE--KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLS-SVLSASAATA 345 (649)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 345 (649)
+-+.++|.+.|.+.+|.+.|+...+ +-+.||..|-..|.+..++..|+.+|.+-++. .|-.+||. .+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 6788999999999999999998764 57889999999999999999999999998874 67777664 4555666677
Q ss_pred ChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 346 TLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
..+.+.++++.+.+.... |+.+..++..+|.-.++++-|+..|+++++
T Consensus 305 ~~~~a~~lYk~vlk~~~~--------------------------------nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPI--------------------------------NVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcCCc--------------------------------cceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 777777777776665322 333334445566667777788888888877
Q ss_pred cCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hh
Q 006343 426 EGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG--PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PG 501 (649)
Q Consensus 426 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~ 501 (649)
.|+. +...|..+.-+|...+.+|-++.-|++.... --.|+ .+.|-.+.......|++.-|...|+-.. ..|+ ..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 7743 4556777777777777888887777777663 22343 5667777777777888888888777655 3333 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
.+++|.-.-.+.|+++.|...+..+....|+-.....+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 77777777778888888888888888887754444333
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=2.2e-07 Score=95.96 Aligned_cols=423 Identities=14% Similarity=0.092 Sum_probs=248.7
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHH
Q 006343 100 KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFN-SITLTILF 175 (649)
Q Consensus 100 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 175 (649)
.|+.+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+ ...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5888899999999999999999999998664 3455799999999999999999999987765433343 44454555
Q ss_pred HHHh-ccCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHhhCCC---CChhh
Q 006343 176 EACG-RFFRYREGVQVHGLVSRF--GF--DYDIILGNSIITMYGRL-----------GFMDEANKVFSMMSK---RDAVS 236 (649)
Q Consensus 176 ~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~y~~~-----------g~~~~A~~~~~~~~~---~~~~~ 236 (649)
+.|. +.+..+++...-..++.. |. ......+..+.-+|... ....++.+.+++..+ .|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 5554 456777777777666662 11 11223333333333321 112333444444432 23333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHhcC
Q 006343 237 WNSLISGYVHNGEIEEAYRLFERMP----GKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTWTAIISGFVNN 309 (649)
Q Consensus 237 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 309 (649)
.-.+.--|+..++.+.|++..++.. ..+...|..|.-.+...+++.+|+.+.+...+. |......-+..-..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 3333344555666666666655543 335566666666666666666666666554432 111111112222234
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHH
Q 006343 310 EQYEEAFRWFIEMLRK--DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG---NVVD 384 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 384 (649)
++.++|+.....++.. ...|-..+.. .|....-..-..... ......+.++..+.......+ ..+.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~-~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLAL-SQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCc-ccccccchhhHHHHHHHHhhhhhccccc
Confidence 5555555555544431 0011000000 000000000000000 011112223332222222111 1111
Q ss_pred HHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 006343 385 AYRIFTNIDERN------IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSM 458 (649)
Q Consensus 385 A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 458 (649)
....+...+.++ ...|......+...++.++|...+.+..... +-....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 111222222233 2356677788888999999988888776642 333444555555677889999999999888
Q ss_pred HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006343 459 KTLYNIEPG-PEHYACMVDILGRAGSLAEAID--LINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 459 ~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~--~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
.. +.|+ +....++..++.+.|+..-|.. ++..+. ..|+ ...|..|+....+.|+.+.|-..|.-++++++.+
T Consensus 711 l~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 LA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred Hh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 76 7886 8888999999999998777777 887765 5554 7799999999999999999999999999999877
Q ss_pred Cc
Q 006343 534 AT 535 (649)
Q Consensus 534 ~~ 535 (649)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 64
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=3.9e-08 Score=96.69 Aligned_cols=231 Identities=12% Similarity=-0.048 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 006343 309 NEQYEEAFRWFIEMLRKD-VRPN--QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDA 385 (649)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 385 (649)
.+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...+..+++..+. ++.+++.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345566777777777532 2222 234555555677778888888888877776654 678888999999999999999
Q ss_pred HHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhc
Q 006343 386 YRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLY 462 (649)
Q Consensus 386 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 462 (649)
...|++.. +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 99999875 345678888889999999999999999999885 45544222222334567889999999977554
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----C-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC-CCCc
Q 006343 463 NIEPGPEHYACMVDILGRAGSLAEAIDLINSM-TF----E-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP-DSAT 535 (649)
Q Consensus 463 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~----~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~ 535 (649)
...|+... ..++..+......+++.+.+.+. .. . .....|..++..+...|+.++|+..++++++.+| +...
T Consensus 194 ~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 194 KLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred hCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 23444322 23444433332333334333321 11 1 2245799999999999999999999999999997 4444
Q ss_pred hHHHHHHHHH
Q 006343 536 PYVVLSDLYS 545 (649)
Q Consensus 536 ~~~~l~~~~~ 545 (649)
+...+..+..
T Consensus 273 ~~~~~~e~~~ 282 (296)
T PRK11189 273 HRYALLELAL 282 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=8.1e-07 Score=94.10 Aligned_cols=548 Identities=13% Similarity=0.053 Sum_probs=324.6
Q ss_pred chHHHHHHHHHhCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCC--hhhHHHHHHH
Q 006343 7 ASYNAMITALINNNCSIYEAFEIFATMP---MRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRD--SVCSNALISG 80 (649)
Q Consensus 7 ~~~~~li~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~--~~~~~~ll~~ 80 (649)
..|..|-..|... -+...|.+.|+..- ..|..+|......|++..+++.|..+.-..-+. +.. ...|..+--.
T Consensus 493 paf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDS-DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3566777777666 56778999998654 456678999999999999999999884433332 111 1223333444
Q ss_pred HHccCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH---HHHHHhcCChhHHHH
Q 006343 81 YLKVGRCEEAARIFEAMVE---KDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAM---VDGYMKVDCFEDGFD 154 (649)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~ 154 (649)
|.+.++...|..-|+.... .|...|..++.+|.++|++..|.++|.+...-++.+|-.- ....+..|.+.+|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 6678899999999998765 3667889999999999999999999988876444433221 122345788899988
Q ss_pred HHHHHHhC------CCCCChhhHHHHHHHHhccCC-------hHHHHHHHHHHHHcCCCCChhhHH--------------
Q 006343 155 LFLSMRRG------GMAFNSITLTILFEACGRFFR-------YREGVQVHGLVSRFGFDYDIILGN-------------- 207 (649)
Q Consensus 155 ~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~-------------- 207 (649)
.+...... +..--..++......+...|- ++.+++.+...+......+...|-
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 88776432 111122333333333332222 233333333333332222222221
Q ss_pred -----HHHHHHHh----cCCH---H---HHHHHHhhCC--CCChhhHHHHHHHHHh----c----CCHHHHHHHHhhCC-
Q 006343 208 -----SIITMYGR----LGFM---D---EANKVFSMMS--KRDAVSWNSLISGYVH----N----GEIEEAYRLFERMP- 261 (649)
Q Consensus 208 -----~l~~~y~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~- 261 (649)
.++..+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+ . .+...|+..+.+..
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 12222221 1111 1 0111110000 0245678777776655 1 22346677776654
Q ss_pred --CCChhHHHHHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006343 262 --GKDFVSWTTMITGFSSKGNLEKSIELFNMMP---EKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSS 336 (649)
Q Consensus 262 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 336 (649)
..+...|++|.-. ...|++.-|...|-+-. +.+..+|..+...+.++.+++.|...|...+... +.|...+..
T Consensus 812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG 889 (1238)
T KOG1127|consen 812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLG 889 (1238)
T ss_pred HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHH
Confidence 3566788887666 66788888888886544 3477899999999999999999999999887742 334455555
Q ss_pred HHHHHHccCChhHHHHHHHH--HHH--hCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC-------------CCChHH
Q 006343 337 VLSASAATATLNQGSQIHAH--VVK--MNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-------------ERNIVS 399 (649)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------~~~~~~ 399 (649)
........|+.-+...++.. ... .|-.++-..+-+........|+.++-...-+.+. +.+...
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 55555566766666666664 222 2323344444444444556676665554444433 234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKD-EGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDIL 478 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l 478 (649)
|.+.....-+.+.+..|.++..+.+. ...+-|..+|+.+. ...|+..-+..-|++.....+..|-..-=..+...+
T Consensus 970 y~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak---~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l 1046 (1238)
T KOG1127|consen 970 YAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK---PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL 1046 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH
Confidence 77777777778888888888777543 11234444555322 122333333333333333334444322222222222
Q ss_pred H--hcCCHHHHHHHHHhCC----CCCChhH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 006343 479 G--RAGSLAEAIDLINSMT----FEPPPGV-WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKR 551 (649)
Q Consensus 479 ~--~~g~~~~A~~~~~~~~----~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (649)
+ -.|+++++.+.|+++. .+.+.++ ...++...-..+..+.|...+-+...+.|.+......|.-++.-..+-.
T Consensus 1047 ~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~ 1126 (1238)
T KOG1127|consen 1047 TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAH 1126 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhh
Confidence 2 3688999999999876 2334333 3344444457788888998888888888888888888887777655554
Q ss_pred HHHHHHHHH
Q 006343 552 DGNRVRMKK 560 (649)
Q Consensus 552 ~a~~~~~~~ 560 (649)
....+.+.+
T Consensus 1127 ~ssaileel 1135 (1238)
T KOG1127|consen 1127 GSSAILEEL 1135 (1238)
T ss_pred hhHHHHHHH
Confidence 444444444
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=2.7e-08 Score=101.89 Aligned_cols=161 Identities=15% Similarity=0.145 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----------CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH-
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNID----------ERNIV-SYNSMISGFAQNGLGEEALNLFRKMKD---EGLVPNQ- 432 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~- 432 (649)
+++.|..+|.+.|++++|...+++.. .+.+. ..+.++..+...+++++|..++++..+ .-+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445556666676666665555433 12222 356667778888888888888887654 1233343
Q ss_pred ---HHHHHHHHHhhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------
Q 006343 433 ---ITFLSVLSACNHVGLVEEGFIYFKSMKTLY-----NIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-------- 495 (649)
Q Consensus 433 ---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-------- 495 (649)
.++..+...+.+.|++++|.++|+++.... +..+. ..+++.|...|.+.++..+|.++|.+..
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 467888888999999999999998887642 11232 5677888999999999999998887653
Q ss_pred CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 496 FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 496 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
..|+ ..++..|...|...|+++.|+++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2344 34788999999999999999999999885
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=102.20 Aligned_cols=247 Identities=13% Similarity=0.095 Sum_probs=177.0
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006343 343 ATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNL 419 (649)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (649)
+.|++.+|.-.++..++..+. +...|.-|....+..++-..|+..+.+.. +.|....-.|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 455566666666666665544 66667777777777777777777777665 34566777777888888888899999
Q ss_pred HHHHHHcCCC-----C---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 420 FRKMKDEGLV-----P---NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 420 ~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
|+.-+....+ + +..+-.. ....+........++|-.+....+..+|++++.+|.-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8888764311 0 0000000 1223333455566777777766666689999999999999999999999999
Q ss_pred HhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhhCCCccC
Q 006343 492 NSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKLKRIRKS 568 (649)
Q Consensus 492 ~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~ 568 (649)
+.+. .+|+ ...||-|+..+....+.++|+.+|.+++++.|+...+...|+-.|...|.++||.+ +..++.-... .
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k--s 531 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK--S 531 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc--c
Confidence 9876 5564 77999999999999999999999999999999999999999999999999999999 5555532111 0
Q ss_pred CceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhh
Q 006343 569 PGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKE 609 (649)
Q Consensus 569 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 609 (649)
. -..+..|+ .+.|+..|+.....|..
T Consensus 532 ~--------------~~~~~~~~-se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 532 R--------------NHNKAPMA-SENIWQTLRLALSAMNR 557 (579)
T ss_pred c--------------ccccCCcc-hHHHHHHHHHHHHHcCC
Confidence 0 00111233 67888888865555543
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2e-06 Score=86.38 Aligned_cols=441 Identities=12% Similarity=0.117 Sum_probs=231.3
Q ss_pred HHHHHHHhCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHH--cc
Q 006343 11 AMITALINNNCSIYEAFEIFATMPM---RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYL--KV 84 (649)
Q Consensus 11 ~li~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~--~~ 84 (649)
+=++.+.+. |.+++|.+.-+.+.. .|...+.+-+-++.+.+.+++|+.+.+.-... ..+.+. +=.+|+ +.
T Consensus 17 t~ln~~~~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~---fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF---FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh---HHHHHHHHHc
Confidence 345667777 899999888887653 45566778888899999999999776654431 111111 345555 88
Q ss_pred CChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006343 85 GRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGM 164 (649)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 164 (649)
+..++|...++.....|..+...-.+.+.+.|++++|..+|+.+.+.+...+..-+.+-+..--. +.. -+.|.....
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~-~~~~q~v~~ 169 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQ-VQLLQSVPE 169 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhh-HHHHHhccC
Confidence 99999999999665666667777788899999999999999999876666665555432221100 011 112333333
Q ss_pred CCChhhHHHHHH-H--HhccCChHHHHHHHHHHHHcCCC----CC---h-------hhHHHHHHHHHhcCCHHHHHHHHh
Q 006343 165 AFNSITLTILFE-A--CGRFFRYREGVQVHGLVSRFGFD----YD---I-------ILGNSIITMYGRLGFMDEANKVFS 227 (649)
Q Consensus 165 ~p~~~t~~~ll~-a--~~~~~~~~~a~~~~~~~~~~g~~----~~---~-------~~~~~l~~~y~~~g~~~~A~~~~~ 227 (649)
.| ..||..+.+ | +...|++..|++++....+.+.+ .| . .+.--|.-++...|+..+|..++.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44 335555543 2 34678999999998888544311 01 0 112234455667788888888777
Q ss_pred hCCCC---Chh----hHHHHHHHHHhcCCHH-HHHHHHhhCCC---------------CChhHHHHHHHHHHcCCChHHH
Q 006343 228 MMSKR---DAV----SWNSLISGYVHNGEIE-EAYRLFERMPG---------------KDFVSWTTMITGFSSKGNLEKS 284 (649)
Q Consensus 228 ~~~~~---~~~----~~~~li~~~~~~g~~~-~A~~~~~~m~~---------------~~~~~~~~li~~~~~~g~~~~A 284 (649)
..... |.. .-|.++..-....-++ .++..++.... ..+..-+.++.+|. +..+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 66542 221 2222222211111111 12222222111 11112233333332 344555
Q ss_pred HHHHhhCCCCC-hhhHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH------
Q 006343 285 IELFNMMPEKD-DVTWTAIISGFV--NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHA------ 355 (649)
Q Consensus 285 ~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~------ 355 (649)
.++...++... ...+.+++.... +...+.+|.+++...-+....-........+......|+++.|..++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 55555555432 223333333221 222355555555555443211112333344444556666666666666
Q ss_pred --HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006343 356 --HVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI 433 (649)
Q Consensus 356 --~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 433 (649)
.+.+.+. .+.+..+++.+|.+.++.+.|..++++.. ..++.- .+...
T Consensus 407 ~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai------------------------~~~~~~-----~t~s~ 455 (652)
T KOG2376|consen 407 KSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAI------------------------KWWRKQ-----QTGSI 455 (652)
T ss_pred hhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHH------------------------HHHHHh-----cccch
Confidence 3333332 23344455556666555555555543322 111111 11111
Q ss_pred HHHHHHH----HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 434 TFLSVLS----ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 434 t~~~ll~----a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
...+++. --.+.|.-++|..+++.+.+. .+++.+...++|.+|++. +.+.|..+-+.++
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1111111 112346666666666666651 334566666666666554 3566666666554
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=4e-06 Score=87.31 Aligned_cols=424 Identities=11% Similarity=0.075 Sum_probs=229.3
Q ss_pred HHHHHhCCChhHHHHHhccCCC--CCccc-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cc---
Q 006343 109 VDGYCKKGRVIEAREIFDKMPE--KNVVA-WTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACG-RF--- 181 (649)
Q Consensus 109 i~~~~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~--- 181 (649)
...+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+++.+ |+...|-..+..|. -.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3556788999999999877554 44444 4456678888999999999999998864 66666655555444 11
Q ss_pred --CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHH
Q 006343 182 --FRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMD-EANKVFSMMSKRDA-VSWNSLISGYVHNGEIEEAYRLF 257 (649)
Q Consensus 182 --~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 257 (649)
.+.+...++++.+...- |.......+.-.+..-..+. .+...+..+..+.+ ..++.+-..|....+..-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 23455555665554432 21111111111111111111 12222222223322 23333333333222222111221
Q ss_pred hhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCC-CCCh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHH
Q 006343 258 ERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMP-EKDD--VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLT 333 (649)
Q Consensus 258 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 333 (649)
.... .....++.+.... ..-. .|.. .++..+...|-..|++++|+++.++.++. .|+ ...
T Consensus 167 ~~~~-----------~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 167 EEYV-----------NSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HHHH-----------HhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 1110 0000011100000 0001 1222 24566778888999999999999999885 565 446
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------HHH--H
Q 006343 334 LSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNI----------VSY--N 401 (649)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~ 401 (649)
|..-...+-..|++.+|....+.+.+.... |..+-+-.+..+.++|++++|.+++.....++. ..| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 777777888999999999999988888765 788888888889999999999999887775441 134 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---C----------HHHHHHHHHHhhccCc-------HHHHHHHHHHhH
Q 006343 402 SMISGFAQNGLGEEALNLFRKMKDE--GLVP---N----------QITFLSVLSACNHVGL-------VEEGFIYFKSMK 459 (649)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~----------~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~ 459 (649)
....+|.+.|++..|++-|....+. .+.- | ..+|..++...-+... ...|++++-.+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 4467888999999888777665542 1222 2 2233333332211111 122333333333
Q ss_pred HhcCCCCChhH-----------HHHHHHHH---HhcCCHHHHHHHHH---------------hCCCCCChhHHHHHHHHH
Q 006343 460 TLYNIEPGPEH-----------YACMVDIL---GRAGSLAEAIDLIN---------------SMTFEPPPGVWGALLGAG 510 (649)
Q Consensus 460 ~~~~~~p~~~~-----------~~~l~~~l---~~~g~~~~A~~~~~---------------~~~~~~~~~~~~~ll~~~ 510 (649)
........... -..+-.-. .+...-+++...-. .-+.+.|....+.-+ .
T Consensus 390 d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~ 467 (517)
T PF12569_consen 390 DKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--L 467 (517)
T ss_pred cCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHH--h
Confidence 21100000000 00000000 01111111111110 001122222222111 1
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
....=+++|.+.++-+.+..|++..+|.+--.+|.+.|++--|.+
T Consensus 468 ~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLq 512 (517)
T PF12569_consen 468 KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQ 512 (517)
T ss_pred cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHH
Confidence 233447899999999999999999999999999999999987776
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=4.7e-05 Score=79.43 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 515 NLDLAKLAAQHLMELEPDS------ATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
|...+++-.+-+++ +|.. ...|..|+..|....+|..|-+..+.|+.
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 66666776766665 2322 34577888999999999999998888874
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=1.8e-05 Score=80.59 Aligned_cols=152 Identities=10% Similarity=0.025 Sum_probs=84.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcccCCh---hHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcC
Q 006343 74 SNALISGYLKVGRCEEAARIFEAMVEKDV---VAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVD 147 (649)
Q Consensus 74 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 147 (649)
|..++..| ..+++..+.+..+.+.+..+ .+.....-.+...|+.++|......-.. ++.++|..+.-.+....
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 33344444 45556666666666554332 2333333345566888888887776655 45678999888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006343 148 CFEDGFDLFLSMRRGGMAFNSI-TLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVF 226 (649)
Q Consensus 148 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 226 (649)
++++|++.|+..... .||.. .+.-+---=++.++++..........+.. +.....|..+.-.+.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 34432 23222212233444444443333333321 112334444555555555555555555
Q ss_pred hhC
Q 006343 227 SMM 229 (649)
Q Consensus 227 ~~~ 229 (649)
+..
T Consensus 167 ~ef 169 (700)
T KOG1156|consen 167 EEF 169 (700)
T ss_pred HHH
Confidence 443
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4.4e-06 Score=76.76 Aligned_cols=311 Identities=12% Similarity=0.102 Sum_probs=208.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHH-HHHHHHHcc
Q 006343 9 YNAMITALINNNCSIYEAFEIFATMPMRNA---VSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSN-ALISGYLKV 84 (649)
Q Consensus 9 ~~~li~~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~ll~~~~~~ 84 (649)
+++.+..+.+. .++.+|.+++..-.++++ ...+.+.-+|....++..|-..|+++....|...-|. .-.+.+-+.
T Consensus 13 ftaviy~lI~d-~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRD-ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHH-hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 45666777787 899999999887665544 4567778899999999999999999987766666553 224556678
Q ss_pred CChHHHHHHHHhcccCChhHHHHHH--H--HHHhCCChhHHHHHhccCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 85 GRCEEAARIFEAMVEKDVVAWGSMV--D--GYCKKGRVIEAREIFDKMP-EKNVVAWTAMVDGYMKVDCFEDGFDLFLSM 159 (649)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~li--~--~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 159 (649)
+.+..|..+...+.+. ....+..+ . .....+++..++.+.++.+ +.+..+.+.......+.|++++|++-|+..
T Consensus 92 ~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 8899999999888754 22222222 2 2235689999999999998 466667777666778999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-------------Ch-hh--------------HHHHHH
Q 006343 160 RRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDY-------------DI-IL--------------GNSIIT 211 (649)
Q Consensus 160 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~~-~~--------------~~~l~~ 211 (649)
.+-|--.....|+..+..+ +.++.+.|.+....+++.|+.. |+ ++ +|.-..
T Consensus 171 lqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 8754444456777766544 5588999999999999887532 11 11 122223
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhc--CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHH
Q 006343 212 MYGRLGFMDEANKVFSMMSKR-----DAVSWNSLISGYVHN--GEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKS 284 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 284 (649)
.+.+.|+.+.|.+.+..|+.+ |++|...+.-.=... +.--+-+..+-+...-...|+..++-.|++..-++.|
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 355678888888888888853 677766554332221 2222223333333233456888888888888888888
Q ss_pred HHHHhhCCCC-----ChhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 006343 285 IELFNMMPEK-----DDVTWTAIISGFVNNEQYEEAFRWFIEM 322 (649)
Q Consensus 285 ~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (649)
-.++.+-... +...|+.+=..-...-.+++|++-+..+
T Consensus 330 ADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 330 ADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8887665442 3334443333333345566665554443
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=1.1e-05 Score=82.24 Aligned_cols=395 Identities=13% Similarity=0.120 Sum_probs=212.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLF 257 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 257 (649)
.+++..+....+.+++ +++....+.....-.+...|+-++|......-.+ ++.+.|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444445555554444 2222222222222234445666666666655443 34566777777777777777777777
Q ss_pred hhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCC
Q 006343 258 ERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKD-VRPN 330 (649)
Q Consensus 258 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 330 (649)
..... .|...+.-+.-.-++.|+++.....-..+.+ .....|..++.++.-.|+...|..+.++..+.. -.|+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 76542 2444555444444555555555444444433 234567777777777777777777777766543 2344
Q ss_pred HHHHHHHHH------HHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHH
Q 006343 331 QLTLSSVLS------ASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--RNIVSYNS 402 (649)
Q Consensus 331 ~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 402 (649)
...+..... .....|.++.+.+........-+ .....--.-.+.+.+.+++++|..++..+.. ||...|.-
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 444433222 23445555555555443322211 1122223345566677777777777776663 33332222
Q ss_pred -HHHHHHhcCC-----------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 006343 403 -MISGFAQNGL-----------------------------------GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG 446 (649)
Q Consensus 403 -li~~~~~~g~-----------------------------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 446 (649)
+..++.+-.+ .+..-+++..+.+.|+++-...+.++..-=-+..
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~ 337 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA 337 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH
Confidence 2222211111 1222344555556665543333333321100000
Q ss_pred cHHH-HHHHHHHhHHhc--------C-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh-hHHHHHHHHHHh
Q 006343 447 LVEE-GFIYFKSMKTLY--------N-IEPG--PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP-GVWGALLGAGRT 512 (649)
Q Consensus 447 ~~~~-a~~~~~~~~~~~--------~-~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~-~~~~~ll~~~~~ 512 (649)
-+++ +..+...+.... . -+|+ ..++-+++..+-+.|+++.|..+++... -.|+. ..|..-...+.+
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh
Confidence 1111 112222221110 0 1344 3445667888889999999999999875 34542 344445566778
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc-----cCCceeEEEEC
Q 006343 513 HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIR-----KSPGCSWIILK 577 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~g~s~i~~~ 577 (649)
.|+++.|...++++.++|-.|...-.--++-..++.+.++|.++.......|.. .+.-|.|..+.
T Consensus 418 ~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 899999999999999998766555546677777888999999976666555532 23466776543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1.7e-06 Score=80.99 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCCCChhHHHHH---HHHHHcCCCh
Q 006343 208 SIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLI---SGYVHNGEIEEAYRLFERMPGKDFVSWTTM---ITGFSSKGNL 281 (649)
Q Consensus 208 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~ 281 (649)
.|-+.+...|++..|..-|....+-|+..|.++. ..|...|+..-|+.-|.++.+.-+..+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3445555556666666666666655555554443 345555555555555544443222111111 2234455555
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhC
Q 006343 282 EKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMN 361 (649)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (649)
+.|..-|+.+.+.++. +|...+|..-+.... ....+...+......|+...++.....+++..
T Consensus 123 e~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 5555555544432110 000000000000000 00111222333344455555555555555543
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006343 362 MESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ 432 (649)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 432 (649)
+- |...+..-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-++ +.||.
T Consensus 186 ~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 186 PW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 32 45555555556666666666555444333 33444444444555555666666655555554 24543
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=6.4e-07 Score=79.55 Aligned_cols=197 Identities=16% Similarity=0.106 Sum_probs=121.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYS 377 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (649)
+...|.-+|.+.|+...|..-+++.++. .|+ +..++..+...|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHH
Confidence 3444555666666666666666666553 232 3344455555566
Q ss_pred hcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCcHHHHHH
Q 006343 378 KCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGL-VPNQITFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~ 453 (649)
+.|+.+.|.+.|++.. +.+-...|....-+|.+|++++|...|++....-. ..-..||..+.-+..+.|+.+.|..
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 6666666666665543 33445566666666777777777777777665321 2224566666666667777777777
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 454 YFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 454 ~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
+|++..+ +.|+ +.....+.......|++..|..+++... ..+...+.-..+..-...||.+.+-+.-.++....
T Consensus 161 ~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 161 YLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777665 3454 5666677777777777777777777654 34555555445555667777777777777777777
Q ss_pred CCC
Q 006343 531 PDS 533 (649)
Q Consensus 531 p~~ 533 (649)
|..
T Consensus 238 P~s 240 (250)
T COG3063 238 PYS 240 (250)
T ss_pred CCc
Confidence 743
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=8.3e-08 Score=92.92 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=68.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChh---HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPE---HYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGA 509 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~ 509 (649)
....+..+.+.++++.|.+.++.|.+ +..|.. ...+.+.+..-...+.+|..+|+++. ..+++.+.+.++.+
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33344444445555555555555443 222211 11222222222335666666666654 34556666666666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch-HHHHHHHHHhh
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKR-DGNRVRMKKKL 562 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~ 562 (649)
....|++++|+..++++++.+|+++.++.+++-+....|+.. .+.+....++.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777777777777777777778877777777777777777773 34456666654
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7e-05 Score=79.86 Aligned_cols=279 Identities=16% Similarity=0.192 Sum_probs=150.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 006343 243 GYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEM 322 (649)
Q Consensus 243 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (649)
....++-+++|..+|++.. .+....+.|+. .-++++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1057 iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 3444555566666665432 11122222222 123334444443333332 23555555555555555555444221
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---------
Q 006343 323 LRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID--------- 393 (649)
Q Consensus 323 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------- 393 (649)
-|+..|..++..+.+.|.+++-...+..+.+..-+|.+. +.|+-+|++.+++.+-++.+..-.
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGD 1202 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhH
Confidence 133445555555555555555555555444444333322 345555555555544443322110
Q ss_pred --------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 394 --------------ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 394 --------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
-.++.-|..+...+...|.+..|.+.-++. .+..||..+-.||...+.+.-|.- .
T Consensus 1203 rcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi-----C 1271 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI-----C 1271 (1666)
T ss_pred HHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh-----c
Confidence 024556777888888888888888766553 356788888889988766554432 1
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC---------------ChhHHHHH
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL---------------NLDLAKLA 522 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g---------------~~~~a~~~ 522 (649)
. .++.-..+-..-++..|...|.++|-..+++... .......+.-|.-.|.+.. |+.+-+++
T Consensus 1272 G-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA 1350 (1666)
T KOG0985|consen 1272 G-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRA 1350 (1666)
T ss_pred C-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHH
Confidence 1 1222345566778889999999999998888754 2333445555555554332 33333333
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 523 AQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
++ ....|.-|..+|.+-..||.|.-
T Consensus 1351 ~e--------qahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1351 AE--------QAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HH--------HHHHHHHHHHHHHhhhhhhHHHH
Confidence 33 33456777788888888887765
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.3e-06 Score=81.00 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc------ccHHHHH
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESD------VSIQNSL 372 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 372 (649)
...+.....+..++..|++.+...++.. -+..-++....++...|........-...++.|...- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4455666666666777777776666642 2223333444455555555555444444433332210 0111223
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCcHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 451 (649)
..+|.+.++.+.|...|.+...+... -....+....++++.......- +.|+.. -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 44677778888888888775421111 0111222334445444444333 234331 122224567788999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 452 FIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+..+.++++ ..| |...|....-+|.+.|.+.+|+.=.+... ..|+ ...|.--+.++..-.+++.|..+|++.++
T Consensus 378 v~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999887 235 58889999999999999998888766544 3444 44555555666677899999999999999
Q ss_pred cCCCCCchHHHHHHHHHhc
Q 006343 529 LEPDSATPYVVLSDLYSVI 547 (649)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~ 547 (649)
.+|++......+...+...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9998888888887777764
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.6e-07 Score=89.49 Aligned_cols=248 Identities=11% Similarity=0.097 Sum_probs=153.5
Q ss_pred HHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 006343 275 FSSKGNLEKSIELFNMMPEK----DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQG 350 (649)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 350 (649)
+.-.|++..++.-.+ .... +......+.+++...|+.+.++. ++... -.|....+..+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334555555554333 1111 22234455566666776655432 22222 255555544444444332333333
Q ss_pred HHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006343 351 SQIHAHVVKMNME-SDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLV 429 (649)
Q Consensus 351 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 429 (649)
..-+......... .++.+......++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3322222212211 23333344446677889999999988775 56667777889999999999999999999874 3
Q ss_pred CCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHH
Q 006343 430 PNQITFLSVLSACNH----VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVW 503 (649)
Q Consensus 430 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~ 503 (649)
+..+...+..++.. ...+.+|..+|+++... ..+++...+.+.-+....|++++|.+++.+.. ..| ++.++
T Consensus 162 -eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 -EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp -CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 34455555555432 23689999999998874 46788889999999999999999999998865 333 46677
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHhccCCCCC
Q 006343 504 GALLGAGRTHLNL-DLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 504 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 534 (649)
.+++..+...|+. +.+.+...++....|+++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7787777888887 778889999999999654
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=5.8e-06 Score=86.16 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=63.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHH-HHHHHHh
Q 006343 436 LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGA-LLGAGRT 512 (649)
Q Consensus 436 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~-ll~~~~~ 512 (649)
..+...|.+.|++++|+++.+..+. ..|+ ++.|..-...|-+.|++.+|.+.++... ..+...-.|+ ....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3344455566666666666666655 3454 5666666666666666666666666554 2232222332 3334446
Q ss_pred cCChhHHHHHHHHHhccC--CCC-------CchHHHHHHHHHhcCCchHHHHH
Q 006343 513 HLNLDLAKLAAQHLMELE--PDS-------ATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
.|++++|+..+.....-+ |.. .-...-.+.+|.+.|++..|.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666665554433 110 01123455666666666666663
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=7.7e-06 Score=83.46 Aligned_cols=290 Identities=8% Similarity=-0.088 Sum_probs=168.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCCC---CChh---hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 006343 267 SWTTMITGFSSKGNLEKSIELFNMMPE---KDDV---TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL-TLSSVLS 339 (649)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 339 (649)
.+..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+. .|+.. .+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence 344444555555655555444443321 1211 2223344566788888998888888775 34433 3321 11
Q ss_pred HHHc----cCChhHHHHHHHHHHHhCCCC-cccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcC
Q 006343 340 ASAA----TATLNQGSQIHAHVVKMNMES-DVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNG 411 (649)
Q Consensus 340 ~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 411 (649)
.+.. .+....+.+.... .....| .......+...+..+|++++|...+++.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 3344444444333 111122 22333455567888999999999998876 345667788888899999
Q ss_pred CHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHH
Q 006343 412 LGEEALNLFRKMKDEGL-VPNQ--ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY-A--CMVDILGRAGSLA 485 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~l~~~g~~~ 485 (649)
++++|+.++++...... .|+. ..+..+...+...|++++|..+++.........+..... . .+...+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998877532 1232 234567777888999999999998875421111221111 1 2333344444333
Q ss_pred HHHHH---HHhC-CCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC---------CCCchHHHHHHHHHhcCC
Q 006343 486 EAIDL---INSM-TFEPP---PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP---------DSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 486 ~A~~~---~~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~ 549 (649)
.+..+ .... +..|. .........++...|+.+.|...++.+....- .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33322 1111 11111 12223455566788999999999988766221 135556788899999999
Q ss_pred chHHHH-HHHHHh
Q 006343 550 KRDGNR-VRMKKK 561 (649)
Q Consensus 550 ~~~a~~-~~~~~~ 561 (649)
+++|.+ +...+.
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 999999 554444
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=4.5e-05 Score=88.36 Aligned_cols=353 Identities=13% Similarity=0.035 Sum_probs=222.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHcCCChHH
Q 006343 210 ITMYGRLGFMDEANKVFSMMSKRDAVS--WNSLISGYVHNGEIEEAYRLFERMPG----KDFVSWTTMITGFSSKGNLEK 283 (649)
Q Consensus 210 ~~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~ 283 (649)
...|...|++.+|..........+... ...........|+.+.+..++..+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 444666777777777666655432211 11222345567888888888877631 233334445556677889999
Q ss_pred HHHHHhhCCC----C----C----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCh
Q 006343 284 SIELFNMMPE----K----D----DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ----LTLSSVLSASAATATL 347 (649)
Q Consensus 284 A~~~~~~~~~----~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~ 347 (649)
|...+..... . + ......+...+...|++++|...+++....-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 8888875421 1 1 112223344566899999999999998763111221 2334455566778999
Q ss_pred hHHHHHHHHHHHhCCC-----CcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcC
Q 006343 348 NQGSQIHAHVVKMNME-----SDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-------R----NIVSYNSMISGFAQNG 411 (649)
Q Consensus 348 ~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g 411 (649)
+.|...+......... ........+...+...|+++.|...+++... + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999988876643211 1123445567778889999999998776541 1 1223445566677789
Q ss_pred CHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcC
Q 006343 412 LGEEALNLFRKMKDE--GLVPN--QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY-----ACMVDILGRAG 482 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~l~~~g 482 (649)
++++|...+++.... ...+. ..++..+.......|+.++|...+...............+ ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999999887653 11222 2334445556778899999999998876532111111111 11224456689
Q ss_pred CHHHHHHHHHhCCCC--CChh----HHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCCc
Q 006343 483 SLAEAIDLINSMTFE--PPPG----VWGALLGAGRTHLNLDLAKLAAQHLMELEP------DSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 483 ~~~~A~~~~~~~~~~--~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 550 (649)
+.++|.+++...... .... .+..+..++...|+.++|...++++++... ....++..++.+|...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998775421 1111 134566677789999999999999987421 2234678889999999999
Q ss_pred hHHHH-HHHHHhh
Q 006343 551 RDGNR-VRMKKKL 562 (649)
Q Consensus 551 ~~a~~-~~~~~~~ 562 (649)
++|.. +++.+..
T Consensus 748 ~~A~~~L~~Al~l 760 (903)
T PRK04841 748 SEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 99999 5666543
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.2e-05 Score=78.57 Aligned_cols=401 Identities=12% Similarity=0.143 Sum_probs=240.8
Q ss_pred CChhHHHHHHH--HHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCCCh
Q 006343 100 KDVVAWGSMVD--GYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRG-G--------MAFNS 168 (649)
Q Consensus 100 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 168 (649)
.|..+-.++++ .|...|+++.|.+-...+. .-..|..|.+.|++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46667777764 5667788888877665554 3456888888888877777776666655321 1 1122
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhc
Q 006343 169 ITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK-RDAVSWNSLISGYVHN 247 (649)
Q Consensus 169 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 247 (649)
.+=..+.-.....|.+++|+.++.+..+.. .|=..|...|.+++|.++-+.-.+ .-..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222222233456788999999999888754 355678889999999988765433 1234666666777778
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 006343 248 GEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDV 327 (649)
Q Consensus 248 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 327 (649)
++.+.|++.|++...+-..++..|.. ++.......+++.++ ..|.-...-+-..|+.+.|+.+|.....
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 89999999998776544444333321 222333333444433 4555566667778999999999988765
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHH
Q 006343 328 RPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGF 407 (649)
Q Consensus 328 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 407 (649)
|-+++...+-.|+.++|-++-++ .| |....-.|..+|...|++.+|...|.+.. ++..-|+.|
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlc 1003 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLC 1003 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 44566667778888888877553 22 56666778999999999999999987654 222222222
Q ss_pred HhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHH---------HHHhHHhcC
Q 006343 408 AQNG---------------LGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIY---------FKSMKTLYN 463 (649)
Q Consensus 408 ~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~ 463 (649)
-.++ +.-.|-..|++ .|.. +......|-++|.+.+|+++ ++-+.++..
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 2221 12222233332 1211 11222335566766666543 233344322
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC---CC---CCchH
Q 006343 464 IEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELE---PD---SATPY 537 (649)
Q Consensus 464 ~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~---~~~~~ 537 (649)
-..|+...+--.+.+....++++|..++-... -+.-.+..|. ..++.-.++..+.+--.. |+ ....+
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 33357777777777777777777777765432 2233344443 334444455555443211 11 12346
Q ss_pred HHHHHHHHhcCCchHHHH
Q 006343 538 VVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~ 555 (649)
..++..+.++|.+.-|.+
T Consensus 1149 eqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHHHHhccchHHHHH
Confidence 677888888887776655
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=2.2e-05 Score=73.75 Aligned_cols=327 Identities=10% Similarity=0.001 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHhhCCC--CChhh-HHHHH
Q 006343 168 SITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNS---IITMYGRLGFMDEANKVFSMMSK--RDAVS-WNSLI 241 (649)
Q Consensus 168 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l~~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li 241 (649)
..--.-+-+.+...|++..|..-+..+++. |+..|.+ -...|...|+...|..-|.++.+ ||... --.-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 334444556666677777777776666653 3333433 34578888988888888877764 55432 12233
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 006343 242 SGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIE 321 (649)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (649)
..+.+.|.++.|..-|+.+...++.- +....++.+.-..++- ......+..+...|+...|+.....
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 56789999999999999887543310 0001111111111111 1112234445556777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH
Q 006343 322 MLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYN 401 (649)
Q Consensus 322 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (649)
+++. .+-|...+..-..+|...|.+..|+.=...+.+..-. +.....-+...+-+.|+.+.++...++..+-|+..-.
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 7663 1234444555556666677777666666655555433 3444445666677778888877777776643332110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHH
Q 006343 402 SMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-----PEHYACMVD 476 (649)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~ 476 (649)
+|..-....+..+.++.|.+. ...+.+.++.+-.+...+ ..|. ...+..+-.
T Consensus 259 ----Cf~~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 259 ----CFPFYKKLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCT 315 (504)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeee
Confidence 111111122222223222221 122233333333333332 2232 122223334
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 477 ILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.+...|++.+|+....+.. +.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 4555566666666555543 4444 4455555556666666666666666666666655443
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.8e-05 Score=70.82 Aligned_cols=404 Identities=12% Similarity=0.075 Sum_probs=213.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHH
Q 006343 136 WTAMVDGYMKVDCFEDGFDLFLSMRRGGMAF-NSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNS-IITMY 213 (649)
Q Consensus 136 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~y 213 (649)
+++.+..+.+..+++.|++++..-.+. .| +....+.+-.++-...++..|-..++++-..- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 566666777777888888877766654 23 44455555555566667777777777665532 22222211 12233
Q ss_pred HhcCCHHHHHHHHhhCCCC-ChhhHHHHHHH--HHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHcCCChHHHHHHHh
Q 006343 214 GRLGFMDEANKVFSMMSKR-DAVSWNSLISG--YVHNGEIEEAYRLFERMP-GKDFVSWTTMITGFSSKGNLEKSIELFN 289 (649)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (649)
-+.+.+..|.++...|.+. +...-..-+.+ .-..+++-.+..++++.. +.+..+.+...-...+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4556667777777766653 22111111111 234566666666666666 3445555555555666777777777776
Q ss_pred hCCCC----ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCChhHHHHHHHHHHHhC
Q 006343 290 MMPEK----DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLT----LSSVLSASAATATLNQGSQIHAHVVKMN 361 (649)
Q Consensus 290 ~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (649)
...+- ...+||.-+ +..+.|+.+.|+++..+++++|++-.+.. -.-.+. ...+..-..++...
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sa---- 239 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSA---- 239 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHH----
Confidence 66542 334555443 33455666777777777777665422110 000000 00000001111100
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006343 362 MESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
-+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-. -..+++.+..+-+.-+.+.+ +-...||.
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 011233334456788999999999999984 466776655322 22455666666666666654 34567999
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCChhHHHHHHHHH-HhcC
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILG-RAGSLAEAIDLINSMTFEPPPGVWGALLGAG-RTHL 514 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~-~~~g 514 (649)
.++-.|++..-++-|-.++-+-....-.-.+...|+ +++++. -.-..++|++-++.+...-....-..-+..- .++.
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888777643211000001233333 333333 3445666666555432100000000111111 1222
Q ss_pred Ch----hHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 515 NL----DLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 515 ~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
+- ..+++-++..+++- -......+++|....++..+.++++.-.
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 22 23344455555532 2345667888888899998988555443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=3.1e-07 Score=79.44 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 006343 418 NLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT- 495 (649)
Q Consensus 418 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~- 495 (649)
.+|++.++. .|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...++...
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 455555553 4554 44566677888999999999988876 455 57888888999999999999999998865
Q ss_pred C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 496 F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 496 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
. +.++..|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3 44577888888888899999999999999999999999998888877654
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.5e-05 Score=77.02 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=154.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH----------HHHHH
Q 006343 334 LSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIV----------SYNSM 403 (649)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 403 (649)
...+..+..+..++..+.+.+....... .+..-++....+|...|....+....+...+..-. +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666667778888888888877776 46777777888888888888777666554422111 22234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcC
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGP-EHYACMVDILGRAG 482 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g 482 (649)
..+|.+.++++.|+..|.+.......||..+ +....+++....+...- +.|.. .-.-.=+..+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 4466777889999999999776554544332 22334555554443332 45552 11222266788999
Q ss_pred CHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 483 SLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 483 ~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
++.+|...+.++. ..| |...|.+...++...|++..|+.-++..++++|+....|..-+-++....+|++|.+.+..-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 444 57788888888889999999999999999999999999999999999999999999955544
Q ss_pred hh
Q 006343 561 KL 562 (649)
Q Consensus 561 ~~ 562 (649)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 44
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.2e-06 Score=80.56 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--R-NI---VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI----T 434 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 434 (649)
.+..+..+...|.+.|+++.|...|+++.. | +. ..|..+..++...|++++|+..++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 344556666677777777777777776652 2 22 355666777777777888888777777642 3211 3
Q ss_pred HHHHHHHhhcc--------CcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHH
Q 006343 435 FLSVLSACNHV--------GLVEEGFIYFKSMKTLYNIEPGPE-HYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGA 505 (649)
Q Consensus 435 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 505 (649)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+..+ +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33444444433 6677777777777652 34322 22111111 1011100 011124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDSA---TPYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
+...+...|+.+.|+..++++++..|+++ .++..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999877654 68899999999999999999977777653
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=3.1e-06 Score=91.61 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 006343 395 RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYA 472 (649)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 472 (649)
.++..+-.|.....+.|++++|..+++...+. .||. .....+..++.+.+.+++|....++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 34667777777777888888888888888774 5664 4556666777888888888888777776 4554 77777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 473 CMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.+..++...|++++|.++|+++. ..|+ ..+|.++..++...|+.+.|..+|+++++....-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 77888888888888888888765 3333 667777888888888888888888888876553444433
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=4.1e-06 Score=76.59 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAG 482 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g 482 (649)
+.+|...|+++.+....+.+.. |. ..+...+..+++...++...+ ..| +.+.|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4567778887776544433221 11 012235667777777777766 344 5888999999999999
Q ss_pred CHHHHHHHHHhCC-CCC-ChhHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 483 SLAEAIDLINSMT-FEP-PPGVWGALLGAG-RTHLN--LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 483 ~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
++++|...+++.. ..| +..++..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|....
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998865 444 567788887764 66676 599999999999999999999999999999999999999966
Q ss_pred HHHhh
Q 006343 558 MKKKL 562 (649)
Q Consensus 558 ~~~~~ 562 (649)
+.+-+
T Consensus 168 ~~aL~ 172 (198)
T PRK10370 168 QKVLD 172 (198)
T ss_pred HHHHh
Confidence 66544
No 108
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=2.6e-05 Score=76.71 Aligned_cols=170 Identities=10% Similarity=0.071 Sum_probs=107.4
Q ss_pred HHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 374 SLYSKCG-NVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLG--EEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 374 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
.++.+.| ++++++..++++. +++..+|+.....+.+.|+. ++++.+++++++.. +-|..+|.....++.+.|+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh
Confidence 3333444 3556666655544 33444555554444444442 55677777776653 3345666666666667777
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---CC----HHHHHHHHHhCC-CC-CChhHHHHHHHHHHhc----
Q 006343 448 VEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA---GS----LAEAIDLINSMT-FE-PPPGVWGALLGAGRTH---- 513 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~---g~----~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~---- 513 (649)
++++++.++.+++ ..| +...|+....++.+. |. .+++.++..++. .. -|...|+-+.+.+...
T Consensus 158 ~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 7777777777766 233 355555555555443 22 245666664443 34 4577999888888774
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 006343 514 LNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVI 547 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (649)
++..+|...+.+++..+|+++.++..|+.+|...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999864
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=1.7e-06 Score=73.40 Aligned_cols=118 Identities=9% Similarity=0.041 Sum_probs=97.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
+.+..-.+...+...|++++|..+|+-.. ..| +..-|..|...|+..|++++|+.+|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35666677788889999999999999765 445 4678999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHH-HHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhh
Q 006343 545 SVIGKKRDGNR-VRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTK 608 (649)
Q Consensus 545 ~~~g~~~~a~~-~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 608 (649)
...|+.+.|.+ ++..+.-.+ .||+..+|...-+.+...+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~------------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG------------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc------------------------cChhHHHHHHHHHHHHHHhh
Confidence 99999999999 555555322 26777777776666555544
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=9e-07 Score=76.50 Aligned_cols=103 Identities=13% Similarity=0.032 Sum_probs=87.6
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 454 YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
+|+...+ +.|+ ++..+...+...|++++|.+.++... .. .+...|..+..+|...|+++.|+..++++++++|
T Consensus 15 ~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4455444 4555 45678889999999999999999876 44 4678999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHH-HHHHh
Q 006343 532 DSATPYVVLSDLYSVIGKKRDGNRV-RMKKK 561 (649)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~ 561 (649)
+++.++..++.++...|+.++|+.. .+.++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999994 44444
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00014 Score=74.22 Aligned_cols=265 Identities=11% Similarity=0.016 Sum_probs=170.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHHHHH-HHHHHHccCChhHHHHHHHHHHHhCCCCcccHHH---
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKD-VRPNQLTLSS-VLSASAATATLNQGSQIHAHVVKMNMESDVSIQN--- 370 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 370 (649)
...|..+...+...|+.+.+...+.+..+.. ..++...... ....+...|+.+.+..++..+.+..+. +...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 4467777788888888888877777766532 1233322222 223456789999999999998887554 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDERN---IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
.+.......|..+.+.+.+....+.+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222233566677777776533322 2344556678889999999999999999863 3445567777788999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHH------HHHHHHHhcCChhH
Q 006343 448 VEEGFIYFKSMKTLYNIEPGP--EHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWG------ALLGAGRTHLNLDL 518 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~------~ll~~~~~~g~~~~ 518 (649)
+++|..+++.........|+. ..|..+...+...|++++|..++++.. ..|....+. .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999888732222332 345678899999999999999999864 223112221 23333445665554
Q ss_pred HHHH---HHHHhccCCCCC--chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 519 AKLA---AQHLMELEPDSA--TPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 519 a~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+.+. ........|... ..-...+.++...|++++|.++.+.++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4444 222211112211 2223677788889999999997777655
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=8.9e-06 Score=74.38 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGF 452 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 452 (649)
+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655543332221 01223567788888888887763 556777888888899999999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 453 IYFKSMKTLYNIEP-GPEHYACMVDIL-GRAGS--LAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 453 ~~~~~~~~~~~~~p-~~~~~~~l~~~l-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
..|+...+ +.| +...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887 566 588888888864 67787 599999999876 445 5678888888899999999999999999
Q ss_pred hccCCCCCchHHHH
Q 006343 527 MELEPDSATPYVVL 540 (649)
Q Consensus 527 ~~~~p~~~~~~~~l 540 (649)
+++.|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99998766554433
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=6.3e-06 Score=82.91 Aligned_cols=250 Identities=15% Similarity=0.083 Sum_probs=162.0
Q ss_pred HHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhH
Q 006343 274 GFSSKGNLEKSIELFNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLTLSSVLSASAATATLNQ 349 (649)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 349 (649)
-+.+.|++.+|.-.|+...+. +..+|..|......+++-..|+..+++.++. .|+ ...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 356777788888888776654 3457777777788888777788877777774 443 3344455555555555555
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC
Q 006343 350 GSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMK-DEGL 428 (649)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~ 428 (649)
|...+..-++..++- ..+... .++...-+. ..+..........++|-++. +.+.
T Consensus 372 Al~~L~~Wi~~~p~y-----~~l~~a------------------~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-----VHLVSA------------------GENEDFENT--KSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHHhCccc-----hhcccc------------------CccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 555555444433220 000000 000000000 11111112234444555543 4553
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHH
Q 006343 429 VPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGA 505 (649)
Q Consensus 429 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ 505 (649)
++|......|.-.|.-.|.+++|+..|+.+.. ++|+ ...|+-|+-.++...+.+||...|+++. ..|. +.++..
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 45666666666668888999999999999987 6775 8889999999999999999999999876 7888 668999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC-----C-----chHHHHHHHHHhcCCchHH
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDS-----A-----TPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----~-----~~~~~l~~~~~~~g~~~~a 553 (649)
|+-+|...|.+++|...+-.++.+.+.+ . ..+..|=.++...++.|-+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 9999999999999999999999877641 1 2455555666666666533
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00029 Score=81.67 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CCh----hhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 212 MYGRLGFMDEANKVFSMMSK----RDA----VSWNSLISGYVHNGEIEEAYRLFERM 260 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 260 (649)
.+...|+++.|...++.... .+. ..++.+...+...|++++|...+.+.
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~a 517 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQT 517 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555544321 111 12333444445555555555555444
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.001 Score=66.78 Aligned_cols=201 Identities=12% Similarity=0.114 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 006343 312 YEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATA---TLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRI 388 (649)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (649)
.+++..+++..+..-..-+..+|..+..---..- ..+....++..+.+.-...-..+|..+++.-.+..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666555333334444433332211111 2444555555555543333345567777777778888888888
Q ss_pred HHhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhc
Q 006343 389 FTNIDE-----RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFIYFKSMKTLY 462 (649)
Q Consensus 389 ~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 462 (649)
|.+..+ .++...++++.-|+. ++..-|.++|+--++. -+|. .--...+.-+++.++-..++.+|+.....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 887763 356677777776665 4667888888875553 2333 33345566677888888888888888874
Q ss_pred CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--C----CCChhHHHHHHHHHHhcCCh
Q 006343 463 NIEPG--PEHYACMVDILGRAGSLAEAIDLINSMT--F----EPPPGVWGALLGAGRTHLNL 516 (649)
Q Consensus 463 ~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~----~~~~~~~~~ll~~~~~~g~~ 516 (649)
++.|+ .+.|..+++-=..-|++..+.++-+++- + ++....-..++.-|...+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 56665 6788888888888888888887766542 2 22223334455555555543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=6.8e-06 Score=84.80 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=147.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHc
Q 006343 200 DYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP--GKDFVSWTTMITGFSS 277 (649)
Q Consensus 200 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~ 277 (649)
+|--..-..+...+.++|-..+|..+|++. ..|...|.+|+..|+..+|..+..+-. +||+..|..+.+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 333444556777778888888888888774 457777777777777777776665543 3556666666666666
Q ss_pred CCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 006343 278 KGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHV 357 (649)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 357 (649)
..-+++|.++++....+-..+| .....++++++++.+.|+.-.+
T Consensus 470 ~s~yEkawElsn~~sarA~r~~---~~~~~~~~~fs~~~~hle~sl~--------------------------------- 513 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSL---ALLILSNKDFSEADKHLERSLE--------------------------------- 513 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhh---ccccccchhHHHHHHHHHHHhh---------------------------------
Confidence 6666666666655443311111 1112234555555555555443
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006343 358 VKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQIT 434 (649)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 434 (649)
.++ ....+|-.+..++.++++++.|.+.|.... +.+..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...
T Consensus 514 --~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~i 589 (777)
T KOG1128|consen 514 --INP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQI 589 (777)
T ss_pred --cCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCee
Confidence 221 144566667777777888888888777655 3345678888888888888888888888888776 444444
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILG 479 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~ 479 (649)
+...+......|.+++|++.++++.......-+.++..-++....
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 555555567778888888888777654333335555555554443
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.3e-07 Score=56.35 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=25.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 198 GFDYDIILGNSIITMYGRLGFMDEANKVFSMMS 230 (649)
Q Consensus 198 g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 230 (649)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777888888888888888877774
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=2.1e-05 Score=86.57 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=148.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
+...|-..+.-....++++.|++++++..+ .-...|.++++.-...|.-+...++|++..+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666777777778888888888887652 12347888888888888778888888888774 22345677
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP---PGVWGALLGAGRT 512 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~---~~~~~~ll~~~~~ 512 (649)
.|+.-|.+.+.+++|.++|+.|.+.++ .....|...++.+.+...-++|.++++++. .-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 788888888888888888888888655 667788888888888888888888887654 2232 3344555556668
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 006343 513 HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (649)
+|+.+.|+.+++-++.-.|.-...|..++..-.+.|..+.++.+++..-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 88888888888888888888888888888888888888888887776665544
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=2.5e-05 Score=71.21 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=50.8
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCC
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLN 515 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~ 515 (649)
......+.|++.+|...|++... .-+||.+.|+.+.-+|.+.|++++|..-|.+.. ...++.+.++|...+...|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 33334444444444444444443 122234444444444444444444444444332 12223344444444444444
Q ss_pred hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 516 LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
.+.|+..+..+....|.++..-.+|+.+....|++++|..
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 4444444444444444444444444444444444444443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=82.97 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC 379 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (649)
..+...+...|-...|+.+|++... +..++.+|...|+..+|..+..+..+ -+||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 3455666777777777777776532 44556666777777777777666655 345777777777776666
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 380 GNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
.-++.|.++++....+-...|+.+ ..+++++.++.+.|+.-.+.. +.-..||..+-.+..+.++++.|.+.|....
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 667777777766543322222222 233677788888777766542 3345566666666677778888888887776
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006343 460 TLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL 529 (649)
Q Consensus 460 ~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 529 (649)
. +.|+ .+.|+.+..+|.+.|+..+|...+++.. ...+..+|.+..-....-|+.+.|++++.+++.+
T Consensus 547 t---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 T---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred h---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5 5665 7778888888888888888887777655 2334556777777777778888888888877763
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=4.1e-05 Score=69.85 Aligned_cols=176 Identities=15% Similarity=0.069 Sum_probs=129.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG 446 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 446 (649)
..+-..+.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... ++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 445556666677777777766644 3455566668888889999999999999988763 778888888888999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHH
Q 006343 447 LVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAA 523 (649)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~ 523 (649)
+.++|..-|.+..+ +.|+ +..++.|.-.|.-.|+++.|..++.... .++ |..+-.+|.-+....|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999888887 4554 7788889989999999999999988765 233 6777788888888999999998887
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCCc
Q 006343 524 QHLMELEPDSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (649)
.+-+..+- -......|..+....|.|
T Consensus 226 ~~e~~~~~-~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 226 VQELLSEQ-AANNVAALRAAASQSGAW 251 (257)
T ss_pred cccccchh-HhhHHHHHHHhhcccchh
Confidence 66544221 122233344444444444
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=6.6e-07 Score=55.02 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 463 NIEPGPEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 463 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
|+.||..+|+.||+.|++.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00015 Score=72.02 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=75.7
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~ 518 (649)
.....|..++|+..++.+.+. .+.|+......++++.+.|+.++|.+.++++. ..|+ ...+-++..++...|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 344567777777777776652 33345666666777777777777777777655 4455 5566667777777777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
|++.+++...-+|+++..|..|+..|...|+..++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 7777777777777777777777777766665555554
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=2.9e-05 Score=74.00 Aligned_cols=182 Identities=15% Similarity=0.046 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCC--cccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChH---HH
Q 006343 329 PNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMES--DVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--R-NIV---SY 400 (649)
Q Consensus 329 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 400 (649)
.....+......+...|+++.|...+..+.+..+.. ....+..+...|.+.|++++|...++.+.+ | +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777888899999999999999988876532 124667788999999999999999998863 2 222 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 006343 401 NSMISGFAQN--------GLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY 471 (649)
Q Consensus 401 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (649)
..+..++... |+.++|++.|+++... .|+.. ....+..... .. ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH---------HHHH
Confidence 5566666654 7889999999999886 45543 2221111100 00 000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-C---CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMT-F---EP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~-~---~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
..+.+.+.+.|++.+|...++... . .| ....|..++.++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356778899999999999888764 2 22 246888899999999999999998888876655
No 125
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00039 Score=68.49 Aligned_cols=207 Identities=13% Similarity=0.068 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASAATA-TLNQGSQIHAHVVKMNMESDVSIQNSLVSLY 376 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (649)
+..+-..+...+..++|+.++.++++. .|+.. .+..--.++...+ .++++...+..+.+.+++ +..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 334444555566777777777777763 45443 3333333344445 467777777777766655 444566555555
Q ss_pred HhcCCH--HHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---Cc-
Q 006343 377 SKCGNV--VDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV---GL- 447 (649)
Q Consensus 377 ~~~g~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~- 447 (649)
.+.|+. +++...++++. ++|..+|+...-.+...|+++++++.++++++.+. -|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 555652 56677776665 46777888888888888999999999999988753 3444555544444443 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc----CCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHh
Q 006343 448 ---VEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA----GSLAEAIDLINSMT-FEP-PPGVWGALLGAGRT 512 (649)
Q Consensus 448 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~----g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~ 512 (649)
.++...+...++. +.| +...|+-+..+|... ++..+|.+++.+.. ..| +......|+..+..
T Consensus 196 ~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3467777766665 355 477788788777763 34566888877754 334 35566677777653
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00012 Score=72.75 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS-ACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMV 475 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 475 (649)
..+--..-.+...|.+++|+..++.++.. .||...|..+.. .+...++.++|.+.++.+.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 33444444566789999999999998886 677777766554 67899999999999999987 5776 66777889
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 006343 476 DILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (649)
.+|.+.|++++|..+++... .+.|+..|..|..+|...|+..++..+ .+..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 99999999999999999876 455688999999999999998777655 45678888999999
Q ss_pred HHHHHHHhhC
Q 006343 554 NRVRMKKKLK 563 (649)
Q Consensus 554 ~~~~~~~~~~ 563 (649)
.......+++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9976666654
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00018 Score=79.69 Aligned_cols=222 Identities=11% Similarity=0.151 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHh-CCC---CcccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHH
Q 006343 332 LTLSSVLSASAATATLNQGSQIHAHVVKM-NME---SDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--RNIVSYNSMIS 405 (649)
Q Consensus 332 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 405 (649)
..|...+.-..+.++++.|+.+.+++.+. ++. --..+|.+++++-..-|.-+...++|++..+ .....|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34555555555666666666666655442 111 1234566666666666666677777776653 22345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcC
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGP---EHYACMVDILGRAG 482 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~l~~~g 482 (649)
.|.+.+.+++|.++|+.|.+. +......|...+..+.+...-+.|..+++++.+ .-|.. +...-.+.+-.+.|
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhhcC
Confidence 777777777777777777764 344556677777777777777777777777665 23443 33344455566777
Q ss_pred CHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCCchHHHHHHHHHhc-CCchHHHHHH
Q 006343 483 SLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL--EPDSATPYVVLSDLYSVI-GKKRDGNRVR 557 (649)
Q Consensus 483 ~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~-g~~~~a~~~~ 557 (649)
+.+.+..+|+... .+.....|+.++..-.+||+.+.++.+|++++++ .|.....+...---|.+. |+-+.+..+.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 7777777777654 2334567777777777777777777777777763 344444444333334333 4443333343
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00018 Score=78.90 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (649)
++-.+-..|...++++.+..+++.+++.+|+|..+..-++..|. +++.+-..+.+.++-.|+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcc
Confidence 34445555666677777777777777777777777777777766 555554444455544444
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=1e-05 Score=69.53 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=70.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 464 IEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 464 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
..|+ ......++..+...|++++|.+.++.+. . +.+...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4443 4556667777777777777777777654 2 33456777777777777888888888888888888778888888
Q ss_pred HHHHHhcCCchHHHHHHHHHh
Q 006343 541 SDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~ 561 (649)
+.+|...|++++|.+..+...
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888887544443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00019 Score=78.03 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=113.9
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 006343 362 MESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQIT-FLS 437 (649)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 437 (649)
...++..+..|.......|..++|..+++... +.+...+..++..+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 34467788888999999999999999999887 345667888899999999999999999999886 566554 445
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLG 508 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~ 508 (649)
+..++.+.|.+++|..+|+++.. -.|+ ...+..+..++...|+.++|...|++.. ..|....++.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 55577889999999999999987 2344 7888999999999999999999999875 4555555555443
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.5e-05 Score=72.18 Aligned_cols=162 Identities=10% Similarity=0.031 Sum_probs=117.1
Q ss_pred hHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH---H
Q 006343 397 IVSYNSM-ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY---A 472 (649)
Q Consensus 397 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~ 472 (649)
..+|..+ ..++...|++++|.+.--..++.. ..+......--.++...++.+.|...|++..+ +.|+-..- .
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSAS 243 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHh
Confidence 3455544 356677899999988777766542 12222222222245667889999999988765 55542211 1
Q ss_pred HH----------HHHHHhcCCHHHHHHHHHhCC-CCC-----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 473 CM----------VDILGRAGSLAEAIDLINSMT-FEP-----PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 473 ~l----------~~~l~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.+ ..-..+.|++.+|.+.+.+.. +.| ++..|.....+..+.|+.++|+.-.+.+++++|....+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 12 334568999999999999875 444 44556666677779999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 537 YVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
|..-+++|...++|++|.+ +.+.|+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 7777764
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0017 Score=59.46 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=66.2
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-
Q 006343 479 GRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR- 555 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~- 555 (649)
.-.++..+|.-+|++|. .+|+..+.+..+.+|...|++++|+..++.++.-+|+++.++.++.-.-...|+-.++..
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 34456677777777765 467777777788888889999999999999999999999999999888888898888776
Q ss_pred HHHHHhh
Q 006343 556 VRMKKKL 562 (649)
Q Consensus 556 ~~~~~~~ 562 (649)
....++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 5555554
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=2.6e-05 Score=78.17 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=89.5
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHh
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRT 512 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~ 512 (649)
..+++..+...+++++|+.+|+++.+. .|+ ....|+.++...++-.+|.+++++.. . +.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555566667777777777777652 243 34456677777777777777777654 2 3345556666666888
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 513 HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
.++.+.|+.+++++.++.|++..+|..|+.+|...|+|++|.-....+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998865554
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0004 Score=63.02 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=120.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcH
Q 006343 372 LVSLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLV 448 (649)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 448 (649)
++-+...+|+.+.|...++.+.. .+...-..-..-+-..|++++|+++++..++.. +.|.+++..=+...-..|..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33344556677777776666542 111111111223445789999999999999876 66677787777777778888
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC---ChhHHHHHH
Q 006343 449 EEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHL---NLDLAKLAA 523 (649)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g---~~~~a~~~~ 523 (649)
-+|++-+....+. +..|.+.|.-+.++|...|++++|.-.++++. ..|- +..+..+...+...| |.+.|.+.+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8999988888874 67789999999999999999999999999976 5554 455566666655443 788999999
Q ss_pred HHHhccCCCCCchHHHH
Q 006343 524 QHLMELEPDSATPYVVL 540 (649)
Q Consensus 524 ~~~~~~~p~~~~~~~~l 540 (649)
.+++++.|.+...+..+
T Consensus 215 ~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHhChHhHHHHHHH
Confidence 99999999766555443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.4e-06 Score=52.74 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 006343 134 VAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNS 168 (649)
Q Consensus 134 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 168 (649)
++||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=5.1e-05 Score=65.09 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 006343 419 LFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-F 496 (649)
Q Consensus 419 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~ 496 (649)
+|++.+.. .|+. .....+...+...|++++|...|+.+... -+.+...+..+...+.+.|++++|...++... .
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 4443 44556666778889999999999888762 23357888888999999999999999888764 3
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 497 -EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 497 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
+.+...+..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4456778888888889999999999999999999976553
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00011 Score=73.66 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-+...+......|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566677778999999999999998777777788899999999999999999998752 3455555555566889999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 006343 448 VEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTF 496 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 496 (649)
++.|..+.+++.. ..|+ ..+|..|+..|...|++++|+..++.+|.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999987 6775 77999999999999999999999999983
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.5e-06 Score=51.43 Aligned_cols=35 Identities=43% Similarity=0.830 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ 432 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 432 (649)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0015 Score=59.81 Aligned_cols=83 Identities=10% Similarity=0.130 Sum_probs=36.5
Q ss_pred HhcCCHHHHHHHHHhcCCCC-hHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHH
Q 006343 377 SKCGNVVDAYRIFTNIDERN-IVSYNSMISGFAQ----NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 451 (649)
.|..+++-|.+.++.|..-| -.+.+.|..++.+ .+...+|.-+|++|-+. .+|+..+.++...+|...|++++|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHH
Confidence 33444444444444444322 2233333333322 22344455555554442 344455555555555555555555
Q ss_pred HHHHHHhHH
Q 006343 452 FIYFKSMKT 460 (649)
Q Consensus 452 ~~~~~~~~~ 460 (649)
..+++....
T Consensus 227 e~lL~eaL~ 235 (299)
T KOG3081|consen 227 ESLLEEALD 235 (299)
T ss_pred HHHHHHHHh
Confidence 555544443
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.04 E-value=0.02 Score=57.94 Aligned_cols=436 Identities=11% Similarity=0.130 Sum_probs=245.4
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006343 100 KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE--K-NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFE 176 (649)
Q Consensus 100 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 176 (649)
-|+.+|+.||.-+... .++++++.++++.. | ....|..-|.+-.+..+++....+|.+.+..-+. ..-|..-|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHH
Confidence 3788999999887666 89999999999876 4 3457999999999999999999999998875443 333444443
Q ss_pred HHhc-cCChHH----HHHHHHHH-HHcCCCC-ChhhHHHHHHHH---------HhcCCHHHHHHHHhhCCCCCh------
Q 006343 177 ACGR-FFRYRE----GVQVHGLV-SRFGFDY-DIILGNSIITMY---------GRLGFMDEANKVFSMMSKRDA------ 234 (649)
Q Consensus 177 a~~~-~~~~~~----a~~~~~~~-~~~g~~~-~~~~~~~l~~~y---------~~~g~~~~A~~~~~~~~~~~~------ 234 (649)
-..+ .+.... ..+.++.. .+.|+++ +..+|+..+... ....+++..+++++++...-.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3322 222222 22334433 3446544 345666666543 334456667777777654211
Q ss_pred ----hhHHHHHHHHH-------hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcC-------CChHHHHHHHhhCCCCCh
Q 006343 235 ----VSWNSLISGYV-------HNGEIEEAYRLFERMPGKDFVSWTTMITGFSSK-------GNLEKSIELFNMMPEKDD 296 (649)
Q Consensus 235 ----~~~~~li~~~~-------~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~~~~~ 296 (649)
..|..=|.... +...+..|.+++++.. .+..++.+. |-.++.. .+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~---------qv 237 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQ---------QV 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHH---------HH
Confidence 11111111100 1111222333322221 111111110 0000000 01
Q ss_pred hhHHHHHHHHhcCCCH--------HHHHHHHHHHHH-CCCCCCHHH-HHHHHH----HHHccCC-------hhHHHHHHH
Q 006343 297 VTWTAIISGFVNNEQY--------EEAFRWFIEMLR-KDVRPNQLT-LSSVLS----ASAATAT-------LNQGSQIHA 355 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~~p~~~t-~~~ll~----~~~~~~~-------~~~a~~~~~ 355 (649)
..|-.+|.--..++.- ....-.+++.+. .+..|+..- +...+. .+...|+ .+++..+++
T Consensus 238 ~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 238 ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 1233333222111110 111222222221 233333221 111111 1222233 345566666
Q ss_pred HHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006343 356 HVVKMNMESDVSIQNSLVSLYSKCG---NVVDAYRIFTNID----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGL 428 (649)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 428 (649)
..+..-...+..+|.++.+---..- ..+....++++.. ..-..+|...+..-.+..-...|..+|.+..+.+.
T Consensus 318 r~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r 397 (656)
T KOG1914|consen 318 RAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR 397 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC
Confidence 5555433334444544443211111 2444444555444 22334677888887888888999999999999988
Q ss_pred CC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--hhH
Q 006343 429 VP-NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT---FEPP--PGV 502 (649)
Q Consensus 429 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~--~~~ 502 (649)
.+ +.....+++. |.-+++..-|.++|+.-.+.+ ..++.--.+.++-+.+.|+-..|..+|++.. ..|+ ..+
T Consensus 398 ~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I 474 (656)
T KOG1914|consen 398 TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI 474 (656)
T ss_pred CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence 88 3444455554 445689999999999887754 3445566788999999999999999999875 2344 469
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCchHHHHHHH
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDS----ATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
|..++.--..-||+..+.++-++....-|.+ ...-..+...|.-.+.+..-..-.+
T Consensus 475 w~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 475 WDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 9999999999999999999999988766622 1223445566777777666555333
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.035 Score=59.67 Aligned_cols=210 Identities=13% Similarity=0.145 Sum_probs=118.6
Q ss_pred CChHHHHHHHhhCCCCCc-chHHHHHHHH--HhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHHHHh
Q 006343 21 CSIYEAFEIFATMPMRNA-VSYAAMITGF--VRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARIFEA 96 (649)
Q Consensus 21 g~~~~A~~~f~~~~~~~~-~~~~~li~~~--~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 96 (649)
+++..|....+....+-+ ..|...+.++ .+.|+.++|..+++..... ..|..|...+-..|...+..++|..++++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 566777776666553322 2455555554 5678888888777766544 34566677777777788888888888888
Q ss_pred cccCC--hhHHHHHHHHHHhCCChh----HHHHHhccCCCCCcccHHHHHHHHHhc-CChh---------HHHHHHHHHH
Q 006343 97 MVEKD--VVAWGSMVDGYCKKGRVI----EAREIFDKMPEKNVVAWTAMVDGYMKV-DCFE---------DGFDLFLSMR 160 (649)
Q Consensus 97 ~~~~~--~~~~~~li~~~~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~---------~A~~~~~~m~ 160 (649)
+.+.+ ......+..+|.|.+++. .|.+++...+++--..|+ +++.+.+. ..++ -|...++.+.
T Consensus 103 ~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 103 ANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 77543 344445556667766654 356666655544333444 34433332 1122 2333444444
Q ss_pred hCCCC-CChhhHHHHHHHHhccCChHHHHHHHH-HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006343 161 RGGMA-FNSITLTILFEACGRFFRYREGVQVHG-LVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK 231 (649)
Q Consensus 161 ~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 231 (649)
+.+-+ -+..-...-+..+...|.+++|..++. .....-...+...-+--++++..++++.+..++-.++..
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 43311 122222222334456677788877773 333333344555556667778888887777666555543
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.1e-06 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 006343 133 VVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAF 166 (649)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 166 (649)
+.+||.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999988887
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.037 Score=59.50 Aligned_cols=211 Identities=10% Similarity=0.094 Sum_probs=138.6
Q ss_pred HhcCChhhHHHHHhhcccCCCChhhHHHHHHHH--HccCChHHHHHHHHhcc---cCChhHHHHHHHHHHhCCChhHHHH
Q 006343 49 VRRGMFYEAEELYVNMPARWRDSVCSNALISGY--LKVGRCEEAARIFEAMV---EKDVVAWGSMVDGYCKKGRVIEARE 123 (649)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 123 (649)
...+++.+|+....+..+..|+.. |..+++++ .+.|+.++|..+++... ..|..+...+..+|...|..++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 456788999999999888777765 44555655 48899999998888663 3578899999999999999999999
Q ss_pred HhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----------ChHHHHHHH
Q 006343 124 IFDKMPE--KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFF----------RYREGVQVH 191 (649)
Q Consensus 124 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------~~~~a~~~~ 191 (649)
++++..+ |+..-...+..+|+|.+.+.+-.+.--+|.+ ..+-+.+.|=++++.....- -+..|....
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 9999987 5544445566788888777654444444443 23345566666666553221 123456666
Q ss_pred HHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 192 GLVSRFG-FDYDIILGNSIITMYGRLGFMDEANKVFSM-----MSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP 261 (649)
Q Consensus 192 ~~~~~~g-~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 261 (649)
+.+++.+ ..-+..-.-.-.......|+.++|..++.. ....+...-+.-+..+...+++.+..++-.++.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666554 222222222233455677889999988832 223344444556667777777777666655554
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0018 Score=71.41 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 006343 332 LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNG 411 (649)
Q Consensus 332 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 411 (649)
..+..+..+|.+.|..+++..+++++++..+. ++.+.|.+...|+.. ++++|.+++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 35555666666666666666666666666633 666777777777777 7777777665432 2355555
Q ss_pred CHHHHHHHHHHHHHc
Q 006343 412 LGEEALNLFRKMKDE 426 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~ 426 (649)
++..+.+++.++...
T Consensus 184 q~~~~~e~W~k~~~~ 198 (906)
T PRK14720 184 QYVGIEEIWSKLVHY 198 (906)
T ss_pred cchHHHHHHHHHHhc
Confidence 666666666666664
No 145
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.96 E-value=4.5e-06 Score=68.19 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=42.0
Q ss_pred CceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhhcCC-CCCCcccccCCcccccc
Q 006343 569 PGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKEFDW-PKHDWSLLGLERDWSYT 629 (649)
Q Consensus 569 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 629 (649)
.||||+++ |.|++||++||+. .+..++...|| |+++.+.|++++++...
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 50 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHD 50 (116)
T ss_pred CCCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhh
Confidence 38999987 9999999999998 55667777899 99999999999987643
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2.1e-05 Score=48.71 Aligned_cols=33 Identities=36% Similarity=0.705 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVP 430 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 430 (649)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0016 Score=59.22 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS-ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDIL 478 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l 478 (649)
|..++-+....|+.+.|...++++... + |...-...+=. -+-..|.+++|+++++++..+ -+.|..+|--=+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555667789999999999998886 3 55443333222 245679999999999999984 233577777777778
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 479 GRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
-..|+.-+|++-+.+.. |..|...|.-|...|...|+++.|.-++++++=+.|-++..+..++.++...|..+.-.-
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888877765 788999999999999999999999999999999999999999999999998886554433
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=9.4e-05 Score=68.91 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=66.1
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~ 518 (649)
..+.+++.+|+..|..++. +.|+ +..|..-.-+|.+.|.++.|.+-.+... +.|. ...|..|..++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3455666777776666665 5554 4455555666777777777776666544 4454 4577777777777788888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
|++.|+++++++|++......|..+--
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 888888888888877655555544433
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00067 Score=58.84 Aligned_cols=115 Identities=16% Similarity=0.065 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPN---QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG--PEHYACMVDILGRAGSL 484 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~ 484 (649)
.++...+...++.+.... +.+ ......+...+...|++++|...|+..... ...|. ......|..++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555666666666666542 111 122222334455566666666666666552 11111 12233355556666666
Q ss_pred HHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 485 AEAIDLINSMTF-EPPPGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 485 ~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
++|+..++..+. ...+..+..++..+...|+.++|+..|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666655431 122334444555555666666666666554
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00012 Score=73.73 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=51.4
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChh
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~ 517 (649)
.+...|++++|+.+|+.+.+ +.| +...|..+..+|.+.|++++|+..++++. ..| +...|..++.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666655554 233 24455555555555555555555555543 223 2445555555555555555
Q ss_pred HHHHHHHHHhccCCCCCchHHHH
Q 006343 518 LAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
.|+..++++++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555544443
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=3e-05 Score=57.40 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=54.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-CchHHHH-HHHHH
Q 006343 499 PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG-KKRDGNR-VRMKK 560 (649)
Q Consensus 499 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~-~~~~~ 560 (649)
++.+|..++..+...|++++|+..++++++++|+++.++..++.+|...| ++++|.+ +.+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 7999998 44444
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00046 Score=59.85 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=90.9
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh----hHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP----GVWGALLG 508 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~----~~~~~ll~ 508 (649)
|..++.+. ..++...+...++.+.+.++-.| .....-.+...+...|++++|.+.++... ..||. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 37888999999999988643332 13445557788999999999999999876 33443 24555677
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
.+...|+++.|+..++.. .-.|-.+..+..++.+|...|++++|...++
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788999999999999774 3344466788899999999999999999543
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00014 Score=57.47 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 471 YACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
+..++..+.+.|++++|...++... ..| +...|..+...+...|+++.|...+++++...|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456666777788888887777654 333 34566667777777788888888888888888877778888888888888
Q ss_pred CchHHHHHHHHH
Q 006343 549 KKRDGNRVRMKK 560 (649)
Q Consensus 549 ~~~~a~~~~~~~ 560 (649)
++++|.......
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 888888754443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00029 Score=58.69 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLG 508 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~ 508 (649)
+..+...+...|++++|...|+.+...+.-.| ....+..++.++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555666666666665554221111 12344456666666666666666666543 2222 335566666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6667777777777777777777765443
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00029 Score=71.13 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA 481 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~ 481 (649)
....+...|++++|+.+|++.++.. +-+...+..+..+|.+.|++++|+..++.+.. +.| +...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999863 44566777888899999999999999999987 566 478899999999999
Q ss_pred CCHHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 006343 482 GSLAEAIDLINSMT-FEPPPGVWGALLGAG 510 (649)
Q Consensus 482 g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~ 510 (649)
|++++|...+++.. ..|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999875 566655555455444
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.038 Score=54.38 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHH
Q 006343 206 GNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSI 285 (649)
Q Consensus 206 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 285 (649)
.+..+.-+...|+...|.++-.+..-||..-|-..+.+++..++|++-..+-.. +..+.-|-..+..|.+.|+..+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 344455566677777777777777777777777778888888887776665443 345677777777777777777777
Q ss_pred HHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 006343 286 ELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRW 318 (649)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (649)
....++ .+..-+..|.+.|++.+|.+.
T Consensus 258 ~yI~k~------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 258 KYIPKI------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHhC------ChHHHHHHHHHCCCHHHHHHH
Confidence 777663 335556667777777777554
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.6e-05 Score=46.39 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006343 134 VAWTAMVDGYMKVDCFEDGFDLFLSMRRGGM 164 (649)
Q Consensus 134 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 164 (649)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.72 E-value=0.054 Score=52.68 Aligned_cols=279 Identities=15% Similarity=0.185 Sum_probs=179.8
Q ss_pred CCChHHHHHHHhhCC---CCChhhHHHHHH--HHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhHH
Q 006343 278 KGNLEKSIELFNMMP---EKDDVTWTAIIS--GFVNNEQYEEAFRWFIEMLRKDVRPNQ--LTLSSVLSASAATATLNQG 350 (649)
Q Consensus 278 ~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a 350 (649)
.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. .|.. .-+..+.-...+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544433 223333333332 23346888999999998876 2322 2344444455678888888
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChH--HHHHHHHHHHh---cCCHHHHHHHH
Q 006343 351 SQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-----ERNIV--SYNSMISGFAQ---NGLGEEALNLF 420 (649)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 420 (649)
+++-+..-..-+. -+..+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+. ..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8888777665443 45677889999999999999999998755 34443 22233332221 23456666665
Q ss_pred HHHHHcCCCCCHHH-HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---C-
Q 006343 421 RKMKDEGLVPNQIT-FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSM---T- 495 (649)
Q Consensus 421 ~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~---~- 495 (649)
.+..+ +.||.+. -..-..++.+.|++.++-.+++.+-+ ..|.+......+ +.|.|+.. ..-++.. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTA--LDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHHh
Confidence 55554 5777554 33445578899999999999999987 577777654433 34555433 2222221 1
Q ss_pred CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHH-HHHHHhhCCCccCCcee
Q 006343 496 FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVI-GKKRDGNR-VRMKKKLKRIRKSPGCS 572 (649)
Q Consensus 496 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~-~~~~~~~~~~~~~~g~s 572 (649)
.+|+ ......+..+....|++..|....+.+....| ..+.|.+|+.+-... |+-.++.. +-+.++ -..+|.++
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~---APrdPaW~ 399 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK---APRDPAWT 399 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc---CCCCCccc
Confidence 3454 55666777788899999999999999999999 788899999997776 88777776 333333 24556544
Q ss_pred E
Q 006343 573 W 573 (649)
Q Consensus 573 ~ 573 (649)
-
T Consensus 400 a 400 (531)
T COG3898 400 A 400 (531)
T ss_pred c
Confidence 3
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0018 Score=68.38 Aligned_cols=139 Identities=14% Similarity=-0.001 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcc--------CcHHHHHHHHHHhH
Q 006343 394 ERNIVSYNSMISGFAQ--N---GLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHV--------GLVEEGFIYFKSMK 459 (649)
Q Consensus 394 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 459 (649)
..|...|...+.+... . +....|..+|++.++. .|+.. .+..+..++... +.+..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566677777666443 2 2256777888887774 56542 232222221110 01112222222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
.......++..|..+.-.....|++++|...++++. ..|+...|..++..+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 100111123334444333344445555554444433 334444444444444445555555555555555555433
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00026 Score=66.04 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 006343 475 VDILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (649)
..-+.+.+++.+|...|.++. +. .|++.|..-..+|.+.|.++.|++.++.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445678899999999999876 55 4577778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006343 553 GNRVRM 558 (649)
Q Consensus 553 a~~~~~ 558 (649)
|++-++
T Consensus 168 A~~ayk 173 (304)
T KOG0553|consen 168 AIEAYK 173 (304)
T ss_pred HHHHHH
Confidence 999544
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.00047 Score=57.42 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHH
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS---ATPYVVL 540 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 540 (649)
..+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456678888999999999999998875 2343 3466778888999999999999999999999875 4578999
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 006343 541 SDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+.++...|++++|.+..+.+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 9999999999999996665554
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=6.7e-05 Score=45.18 Aligned_cols=31 Identities=48% Similarity=0.889 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGL 428 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 428 (649)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0013 Score=59.04 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN--QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYA 472 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 472 (649)
....+..+...+...|++++|+..|++.......++ ...+..+..++.+.|++++|..+++...+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 444677777778888888888888888876543332 35667777778888888888888888776 345 356666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 006343 473 CMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (649)
.++.++...|+...+..-++.. ...++.|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766555333221 123677889999999999866 5566666665554
No 164
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.61 E-value=0.09 Score=52.29 Aligned_cols=304 Identities=12% Similarity=0.058 Sum_probs=171.2
Q ss_pred HHhCCCChHHHHHHHhhCCCC---C------cchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHH--Hcc
Q 006343 16 LINNNCSIYEAFEIFATMPMR---N------AVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGY--LKV 84 (649)
Q Consensus 16 ~~~~~g~~~~A~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~--~~~ 84 (649)
+.+. +++.+|.++|-++-.. + .+..+.++++|... +.+..........+..| ...|-.+..+. -+.
T Consensus 16 Lqkq-~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQ-KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHH-hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 3466 8999999999887532 2 23356788888754 34444344444433334 34455555443 377
Q ss_pred CChHHHHHHHHhccc------------------CChhHHHHHHHHHHhCCChhHHHHHhccCCC--------CCcccHHH
Q 006343 85 GRCEEAARIFEAMVE------------------KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE--------KNVVAWTA 138 (649)
Q Consensus 85 ~~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~~~~~~~~ 138 (649)
+.+..|.+.+..-.. +|.+.-+..+..+.+.|++.+++.++++|.+ .++.+||.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 888999888764421 2344456677888899999999999988763 57778887
Q ss_pred HHHHHHhc--------CC-------hhHHHHHHHHHHhC------CCCCChhhHHHHHHHHhc--cCChHHHHHHHHHHH
Q 006343 139 MVDGYMKV--------DC-------FEDGFDLFLSMRRG------GMAFNSITLTILFEACGR--FFRYREGVQVHGLVS 195 (649)
Q Consensus 139 li~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~ 195 (649)
++-.+.++ .. ++.++-..++|... .+.|-...+..++....- ...+.--.+++..-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 54433331 11 23333333444322 245555556666555432 234445556666666
Q ss_pred HcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHhhCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCC
Q 006343 196 RFGFDYDII-LGNSIITMYGRLGFMDEANKVFSMMS--------KRDAVSWNSLISGYVHNGEIEEAYRLFERMP--GKD 264 (649)
Q Consensus 196 ~~g~~~~~~-~~~~l~~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~ 264 (649)
+.-+.|+-. +...|+.-+.+ +.+++..+-+.+. ++=+.++..++....+.++..+|.+.+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 666667643 34455555554 4455544443332 2345678889999999999999988777554 333
Q ss_pred hhHH-------HHHHHHHHc----CCChHHHHHHHhhCCCCChh-----hHH-HHHHHHhcCCC-HHHHHHHHHHHHH
Q 006343 265 FVSW-------TTMITGFSS----KGNLEKSIELFNMMPEKDDV-----TWT-AIISGFVNNEQ-YEEAFRWFIEMLR 324 (649)
Q Consensus 265 ~~~~-------~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-----~~~-~li~~~~~~g~-~~~A~~~~~~m~~ 324 (649)
.... ..+.++.+. ..+..+-+.+++.+...|+. .|- .-..-+-+.|. -++|+++++.+++
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2211 222222221 11222333444444433321 221 11233444555 6778888888776
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=3.6e-05 Score=59.60 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhCC-CCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 482 GSLAEAIDLINSMT-FEP---PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 482 g~~~~A~~~~~~~~-~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
|++++|+.+++++. ..| +...|..+..++...|++++|..++++ .+.+|.++.....++.+|...|++++|+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555443 122 334455556666666666666666666 5566655555666666666666666666643
No 166
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.59 E-value=0.12 Score=53.43 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=132.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNIDER---NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
+...|...++--.+.|+.+.+.-.|++..-| -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888899999999999988743 2345666666666668888888888777765444444443333344
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhCC-CCCChhHHHHHHH-----HHH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAI---DLINSMT-FEPPPGVWGALLG-----AGR 511 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~---~~~~~~~-~~~~~~~~~~ll~-----~~~ 511 (649)
+-..|+.+.|..+++.+... . |+ .+.-.--+....|.|..+.+. +++.... ..-+..+.+.+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 67889999999999999985 4 76 444455567788999999988 6665543 3333333333322 234
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (649)
..++.+.|..++.++.+..|.+...|..+.++....+..
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999998877643
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0013 Score=56.27 Aligned_cols=100 Identities=11% Similarity=-0.038 Sum_probs=81.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 463 NIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 463 ~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
|+.++ .+..-....-+-..|++++|..+|+-+. ..-+..-|..|...|...++++.|+..|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 45554 3333344455568899999999998754 34456788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 006343 540 LSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.+..|...|+.+.|..-+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999996655543
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.00069 Score=53.30 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=42.9
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
+...|++++|..+|+.+.+ ..| +...+..+...+...|++++|.+.++... . +.+..+|..+...+...|+.+.
T Consensus 10 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 10 YYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 3334444444444444433 122 12334444455555555555555554432 1 2223455555556666666666
Q ss_pred HHHHHHHHhccCC
Q 006343 519 AKLAAQHLMELEP 531 (649)
Q Consensus 519 a~~~~~~~~~~~p 531 (649)
|...++++++..|
T Consensus 87 a~~~~~~~~~~~~ 99 (100)
T cd00189 87 ALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHccCC
Confidence 6666666666555
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=3.5e-05 Score=47.30 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=31.0
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 522 AAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
+++++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0037 Score=55.76 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN--QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACM 474 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 474 (649)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++.... +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4566667777777888888888888776432221 23566677777777888888887777765 3443 4455555
Q ss_pred HHHHH
Q 006343 475 VDILG 479 (649)
Q Consensus 475 ~~~l~ 479 (649)
..++.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00019 Score=52.25 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|....+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777777777744444
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.54 E-value=0.11 Score=51.60 Aligned_cols=435 Identities=13% Similarity=0.117 Sum_probs=214.2
Q ss_pred HHhcCChhhHHHHHhhcccC-CCChhh------HHHHHHHHHccCChHHHHHHHHhcccC-ChhHHHHHHH--HHHhCCC
Q 006343 48 FVRRGMFYEAEELYVNMPAR-WRDSVC------SNALISGYLKVGRCEEAARIFEAMVEK-DVVAWGSMVD--GYCKKGR 117 (649)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~-~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~g~ 117 (649)
+.+++++.+|.++|.++-.. ..+++. -+.++++|.. ++++.-........+. ....|-.|.. ..-+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 45678899999999888654 222222 3456677753 3455544444443321 1222333332 3356788
Q ss_pred hhHHHHHhccCCCC------------------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCChhhHHHHH
Q 006343 118 VIEAREIFDKMPEK------------------NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGM----AFNSITLTILF 175 (649)
Q Consensus 118 ~~~A~~~f~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 175 (649)
+.+|.+.|..-.+. |..-=+..+.++...|.+.++..++++|...=. ..+..+|+.+.
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888887554321 111223445566677788887777777755322 25666666543
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH------hcC
Q 006343 176 EACGRFFRYREGVQVHGLVSRFGFDYD-IILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYV------HNG 248 (649)
Q Consensus 176 ~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~------~~g 248 (649)
-.+++ ..+-.+++.. ..| ..-|-.++-.|.+.=..-++... .+.. |.. ..+.+|.-.. +.-
T Consensus 175 lmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~~~Y-~k~~-pee-eL~s~imqhlfi~p~e~l~ 242 (549)
T PF07079_consen 175 LMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQRPY-EKFI-PEE-ELFSTIMQHLFIVPKERLP 242 (549)
T ss_pred HHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhhchH-HhhC-cHH-HHHHHHHHHHHhCCHhhcc
Confidence 33322 2222222211 111 01122233333332111111000 0000 000 0111111000 001
Q ss_pred CHHHHHHHHhhC-CCCCh-hHHHHHHHHHHcCCChHHHHHHHhhCC--------CCChhhHHHHHHHHhcCCCHHHHHHH
Q 006343 249 EIEEAYRLFERM-PGKDF-VSWTTMITGFSSKGNLEKSIELFNMMP--------EKDDVTWTAIISGFVNNEQYEEAFRW 318 (649)
Q Consensus 249 ~~~~A~~~~~~m-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (649)
-+-.+++.++.- ..|+. .+...|+.-..+ +.+++..+.+.+. +.=+.++..++...++.++..+|-+.
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 111222222211 12222 233334444433 4444444433332 22345788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHH-------HHHHH-c---cCChhHHHHHHHHHHHhCCCCcccHHHHHH---HHHHhcCC-HH
Q 006343 319 FIEMLRKDVRPNQLTLSSV-------LSASA-A---TATLNQGSQIHAHVVKMNMESDVSIQNSLV---SLYSKCGN-VV 383 (649)
Q Consensus 319 ~~~m~~~g~~p~~~t~~~l-------l~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~ 383 (649)
+.-+.- +.|+...-..+ -+..+ . ..++..-..+|..+...++.. .....-|+ .-+-+.|. -+
T Consensus 321 l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 321 LALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccH
Confidence 776654 24443211111 11111 1 112233334444444444431 12222222 23445555 77
Q ss_pred HHHHHHHhcC---CCChHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH--hhccCc
Q 006343 384 DAYRIFTNID---ERNIVSYNSMI----SGFAQ---NGLGEEALNLFRKMKDEGLVPNQIT----FLSVLSA--CNHVGL 447 (649)
Q Consensus 384 ~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a--~~~~g~ 447 (649)
.|..+++.+. ..|...-|... ..|.+ .....+-+.+-+-..+.|++|-.+. -+.|..| +...|+
T Consensus 398 kalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqge 477 (549)
T PF07079_consen 398 KALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGE 477 (549)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhccc
Confidence 7888887765 34444333322 22322 2234455555555667788775443 3333332 345788
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHH
Q 006343 448 VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGA 505 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 505 (649)
+.++.-+-.-+.+ +.|++.+|..++-.+....+++||.+++..+| |+..+|++
T Consensus 478 y~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 478 YHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 8888776554544 88999999999999999999999999999987 67666664
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00015 Score=52.78 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 474 MVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
+...+.+.|++++|.+.+++.. ..|+ ...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567888899999999998865 4454 66888888999999999999999999999999764
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.00064 Score=60.71 Aligned_cols=88 Identities=11% Similarity=-0.077 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
...|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|++++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5556677777888889999988888763 2222 3478889999999999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHH
Q 006343 543 LYS-------VIGKKRDGNR 555 (649)
Q Consensus 543 ~~~-------~~g~~~~a~~ 555 (649)
+|. ..|++++|..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHhhHHHHHcccHHHHHH
Confidence 999 7888886666
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.0022 Score=67.59 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHH
Q 006343 426 EGLVPNQITFLSVLSACNHV-----GLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRA--------GSLAEAIDLI 491 (649)
Q Consensus 426 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~--------g~~~~A~~~~ 491 (649)
.+.+.|...|...+.+..+. +..++|+.+|+++.+ +.|+ ...|..+..++... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567778888888875442 337789999999987 6887 55566554444322 2344555555
Q ss_pred HhCC----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 492 NSMT----FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 492 ~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
++.. ...++.++.++.......|++++|...++++++++| +..+|..++.+|...|+.++|.+ +.++++-
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5422 234556788777777788999999999999999999 68899999999999999999999 5555553
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00065 Score=63.89 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=86.7
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCCchHH
Q 006343 465 EP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTH---LNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 465 ~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.| |.+-|..|...|.+.|+.+.|..-|.... ..+++..+..+..++... ....++..++++++.++|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 69999999999999999999999998865 355677888888776533 3467999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCC
Q 006343 539 VLSDLYSVIGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (649)
.|+..+...|++.+|....+.|-+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999998888876443
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.12 Score=50.87 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHH
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVE 449 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 449 (649)
+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..+++++-.++... +-.++-|...+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33355556677778888887777777777888888888888888766654321 223466777777787778888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 450 EGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINS 493 (649)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 493 (649)
+|..+...+ .+..-+.+|.++|.+.+|.+.--+
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 877776541 114456777788888777766444
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0024 Score=62.07 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA-CNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888899999999988542 3344455544444 33357777799999999985 4556888999999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 477 ILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
.+.+.|+.+.|..+|++.. .-|. ..+|...+.--..+|+++....+.+++.+.-|++ .....+++-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry~ 151 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRYS 151 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHhh
Confidence 9999999999999999865 2232 3589999999999999999999999999998853 33344444443
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.00093 Score=59.92 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
...+..++..+.+.|++++|...+++.. ..|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456667777777888888888777654 2222 3577888888889999999999999999999999999999999
Q ss_pred HHHhcCC
Q 006343 543 LYSVIGK 549 (649)
Q Consensus 543 ~~~~~g~ 549 (649)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988877
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.0002 Score=52.76 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=9.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
+..+|...|++++|...+++++..+|
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33333333333333333333333333
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.065 Score=52.36 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=56.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChhHHHHHHHHHHHhC--CCCc--cc
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVR-----PNQL-TLSSVLSASAATATLNQGSQIHAHVVKMN--MESD--VS 367 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~ 367 (649)
.+..++..+.+.|++++|+++|++....-.. .+.. .+...+-++...|+...|...++...... +..+ -.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4566777888888999999988888764322 1221 22223334455677777777777665442 2222 23
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhcCCCChHH
Q 006343 368 IQNSLVSLYSK--CGNVVDAYRIFTNIDERNIVS 399 (649)
Q Consensus 368 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~ 399 (649)
+...|+.+|-. ...++.|..-|+.+.+.|..-
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 44555666544 245667777777777665543
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.26 Score=51.67 Aligned_cols=369 Identities=17% Similarity=0.148 Sum_probs=165.3
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHH----------HhcCChhHHHHHHHHHHhCCCCCCh
Q 006343 100 KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE-KNVVAWTAMVDGY----------MKVDCFEDGFDLFLSMRRGGMAFNS 168 (649)
Q Consensus 100 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~p~~ 168 (649)
|.+..|..|...-.+.-.++.|...|-+..+ +.+.....|-..+ .--|.+++|.++|-+|-+..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh----
Confidence 5677788777766666667777777666543 2221111111111 113667777777766654321
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 006343 169 ITLTILFEACGRFFRYREGVQVHGLVSRFGFDYD----IILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGY 244 (649)
Q Consensus 169 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 244 (649)
.+....+.|++-...+++.. -|-..| ...++.+.+.++....+++|.+.+..-.. ....+.++
T Consensus 766 -----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecl 832 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECL 832 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHH
Confidence 22333344554444333221 111111 23445555555555555555555543321 11233444
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006343 245 VHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (649)
.+...+++-..+-+.+. .+....-.+.+++...|.-++|.+.|-+-..|. +.+..|...+++.+|.++-+...
T Consensus 833 y~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~- 905 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ- 905 (1189)
T ss_pred HHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc-
Confidence 44444444333333332 233344455566666666666655554443331 12233444445555554433321
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH---HHH
Q 006343 325 KDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIV---SYN 401 (649)
Q Consensus 325 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~ 401 (649)
-|...|+.+ ++.-..+.+. .+ .--|.++.+.|..-+|.+++.+|.++... .+-
T Consensus 906 ---l~qv~tlia--------------k~aaqll~~~------~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 906 ---LPQVQTLIA--------------KQAAQLLADA------NH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred ---chhHHHHHH--------------HHHHHHHhhc------ch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 122222110 0000011111 11 12356677777777777777777632111 111
Q ss_pred HH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 402 SM----ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 402 ~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
.+ +-+-.-..+..++++-.++....|...|... +...|...++-++.+..-+ -....|+..|..-
T Consensus 962 r~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQr 1030 (1189)
T KOG2041|consen 962 RLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHH
Confidence 11 1111112234555555555555554433322 2233344444444433222 1234455556666
Q ss_pred HHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006343 478 LGRAGSLAEAIDLINSMT----FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLM 527 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 527 (649)
-.+.|..+.|+..--.+. +-|...+|..|.-+....+.+...-+++-++-
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 677888888886533332 33555566544433333344444444444443
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00041 Score=51.26 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHL-NLDLAKLAAQHLMELEP 531 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 531 (649)
++..|..++..+.+.|++++|+..|++.. ..| ++.+|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35567778888888888888888888765 444 4668888888899998 79999999999999988
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.017 Score=52.88 Aligned_cols=174 Identities=11% Similarity=-0.026 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDE--RNI--------VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSV 438 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 438 (649)
+++|...+.-..-+++-...|+.-.. ..+ ..-++++..+.-+|.+.-.+.++++.++...+.+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45666666555555555555544332 222 23466777777888999999999999997656677777888
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHh
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLY----NIEPGPEHYACMVDILGRAGSLAEAIDLINSMTF-EPP-PGVWGALLGAGRT 512 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~ 512 (649)
.+.-.+.|+++.|..+|+...+.. ++.-+.-....+...+.-++++.+|...+.+++. .|. +...|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888899999999999999766542 2333344444555667788899999999999883 333 3444444333445
Q ss_pred cCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 513 HLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
.|+...|++..+.+++..|.....-..+.|
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 789999999999999999966555433333
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.00051 Score=50.55 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=46.2
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
...|+++.|+..++++++.+|+++..+..++.+|...|++++|.++.+.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999997665543
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.095 Score=51.19 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHhhccCcHHHHHHHHHHhHHh-cCCCCC--hh
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-----Q-ITFLSVLSACNHVGLVEEGFIYFKSMKTL-YNIEPG--PE 469 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 469 (649)
.+..+...+.+.|++++|+++|++........+ . ..|...+-++...|++..|.+.|+..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 345566677777888888888877766432211 1 12233333455667777777777766542 122222 22
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 006343 470 HYACMVDILGR--AGSLAEAIDLINSMT 495 (649)
Q Consensus 470 ~~~~l~~~l~~--~g~~~~A~~~~~~~~ 495 (649)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 23334444432 334555555555554
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.027 Score=48.89 Aligned_cols=125 Identities=12% Similarity=0.136 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---ChhH
Q 006343 428 LVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIE-PGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP---PPGV 502 (649)
Q Consensus 428 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~---~~~~ 502 (649)
+-|+...-..|..+....|+..||...|++... |+- .|....-.+..+....+++.+|...++++- ..| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 467777777888888899999999999988876 444 357777778888888899999988887643 222 1223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
...+...+...|..+.|+..++.++..-| ++..-...+..++++|+.+++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 44567788999999999999999999999 78888889999999999998887
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.00088 Score=50.09 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=43.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888888888844433
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.22 E-value=0.0086 Score=51.19 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=6.8
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006343 408 AQNGLGEEALNLFRKMK 424 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~ 424 (649)
...|++++|..+|+-..
T Consensus 46 y~~G~l~~A~~~f~~L~ 62 (157)
T PRK15363 46 MEVKEFAGAARLFQLLT 62 (157)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 33344444444444333
No 190
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00087 Score=51.75 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 006343 410 NGLGEEALNLFRKMKDEGLV-PNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEA 487 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A 487 (649)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..|+ ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46666777777776664321 2333444455666666666666666655 21 2222 23333445666666666666
Q ss_pred HHHHHh
Q 006343 488 IDLINS 493 (649)
Q Consensus 488 ~~~~~~ 493 (649)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
No 191
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.43 Score=50.70 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=59.0
Q ss_pred hCCCCCChhhHH-----HHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHhhCCC-
Q 006343 161 RGGMAFNSITLT-----ILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG---FMDEANKVFSMMSK- 231 (649)
Q Consensus 161 ~~g~~p~~~t~~-----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~~~~- 231 (649)
.-|++.+..-|. .+|.-+...+.+..|.++-..+...-..- ..++.....-+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 346665554443 34555566677777777766654322122 566666777676653 23334444444444
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 232 -RDAVSWNSLISGYVHNGEIEEAYRLFERM 260 (649)
Q Consensus 232 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m 260 (649)
..-++|..+..-..+.|+.+-|..+++.=
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E 533 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELE 533 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 45667777777777888888888777643
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.15 E-value=0.0014 Score=65.63 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP---YVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
...|+.+..+|...|++++|+..++++++++|++..+ |.+++.+|...|+.++|.. +++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666655533 6666666666666666666 444444
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.00076 Score=44.42 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
.+|..+..++...|++++|++.++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999998888764
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.08 E-value=0.0065 Score=48.11 Aligned_cols=80 Identities=8% Similarity=0.004 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCChhhH
Q 006343 136 WTAMVDGYMKVDCFEDGFDLFLSMRRGGM-AFNSITLTILFEACGRFF--------RYREGVQVHGLVSRFGFDYDIILG 206 (649)
Q Consensus 136 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 206 (649)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999987653 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 006343 207 NSIITMYGR 215 (649)
Q Consensus 207 ~~l~~~y~~ 215 (649)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.069 Score=55.23 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=107.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHH---------HHHHhCCCCCChhhHHHHHHHHhccCChHHHHH--HHHHHHHcCCCC
Q 006343 133 VVAWTAMVDGYMKVDCFEDGFDLF---------LSMRRGGMAFNSITLTILFEACGRFFRYREGVQ--VHGLVSRFGFDY 201 (649)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~--~~~~~~~~g~~~ 201 (649)
.+.+.+-+..|...|.+++|..+- +.+... ..+...++..=+||.+..+..--+- -++.+.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 345556666677777777776541 111000 0122234444455555555443332 234556666666
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHH-----HHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHH
Q 006343 202 DIILGNSIITMYGRLGFMDEANKVFSMMSKRD--AVSWNS-----LISGYVHNGEIEEAYRLFERMPG--KDFVSWTTMI 272 (649)
Q Consensus 202 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li 272 (649)
+... +.+.++-.|++.+|-++|.+-...+ ...|+- ...-|...|..++-..+.++-.+ .++.--.+..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA 710 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA 710 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 6543 4455667788888888776543221 111111 11122222222222222221110 0111111222
Q ss_pred HHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 006343 273 TGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQ 352 (649)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 352 (649)
.++...|+.++|..+ +..+|-.+-++++-+++- +.+..++..+..-+-+...+..|-+
T Consensus 711 EmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHH
Confidence 333333333333332 122222222322222221 2234455555555566667777777
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006343 353 IHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE 394 (649)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (649)
||..+-.. .+++++....+++++|..+-++.++
T Consensus 769 IF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 769 IFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 77765432 3578888888999999998888875
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.04 E-value=0.013 Score=59.36 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHh--CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHH
Q 006343 326 DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKM--NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID----ERNIVS 399 (649)
Q Consensus 326 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~ 399 (649)
+.+.+...+..++..+....+++.+..++...... ....-+.+..++++.|.+.|..+.+..+++.=. =||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33445556666666666666666666666555443 222334444566777777777776666665433 266667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
+|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777666666666666666555555543
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.016 Score=50.25 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=90.7
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC-
Q 006343 457 SMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT---FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD- 532 (649)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 532 (649)
+..++..+.|+..+-..|...+.+.|+..||...|++.. +..|......+.++....++...|...++++.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 334445578999998999999999999999999999865 6778888888999999999999999999999998884
Q ss_pred -CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 533 -SATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 533 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.+....+++..|...|+..+|..-++....
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 577789999999999999999985555443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.0064 Score=50.03 Aligned_cols=82 Identities=20% Similarity=0.089 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCchHHHHHHHHH
Q 006343 474 MVDILGRAGSLAEAIDLINSMT-F---EPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD---SATPYVVLSDLYS 545 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~-~---~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 545 (649)
+..++-..|+.++|..++++.. . .++ ...+-.+.+.++..|++++|..++++.++-.|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445556666677776666543 1 111 224555667777777777777777777777676 5555666777777
Q ss_pred hcCCchHHHH
Q 006343 546 VIGKKRDGNR 555 (649)
Q Consensus 546 ~~g~~~~a~~ 555 (649)
..|++++|.+
T Consensus 87 ~~gr~~eAl~ 96 (120)
T PF12688_consen 87 NLGRPKEALE 96 (120)
T ss_pred HCCCHHHHHH
Confidence 7788877777
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.017 Score=47.57 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPN--QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILG 479 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~ 479 (649)
+..++-..|+.++|+.+|++....|...+ ...+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886655 34667777888999999999999998887432111 2233333456778
Q ss_pred hcCCHHHHHHHHHh
Q 006343 480 RAGSLAEAIDLINS 493 (649)
Q Consensus 480 ~~g~~~~A~~~~~~ 493 (649)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88898888887654
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0022 Score=47.84 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=52.0
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 476 DILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
.+|.+.+++++|.+.++.+. ..| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56788899999999988876 434 466778888888899999999999999999999776655443
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.32 Score=46.15 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=38.5
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCChhHHHHHHHHHHHhCCC
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLT----LSSVLSASAATATLNQGSQIHAHVVKMNME 363 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (649)
+...+-.....+.+.|++++|++.|+++... .|+... ...+..++.+.++.+.|...++..++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3333444555566677788888888777764 333221 123344556666666666666666665443
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.92 E-value=0.13 Score=48.76 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=28.6
Q ss_pred HcCCChHHHHHHHhhCCCC--C-hh---hHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 006343 276 SSKGNLEKSIELFNMMPEK--D-DV---TWTAIISGFVNNEQYEEAFRWFIEMLRK 325 (649)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~--~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (649)
.+.|++++|.+.|+.+... + .. ..-.++.++.+.+++++|...|++.++.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444555555555544431 1 11 1234556777788888888888887775
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.0059 Score=59.38 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHh---HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCChh
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSM---KTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--------FEPPPG 501 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--------~~~~~~ 501 (649)
.|..|-+.|.-.|+++.|+...+.- .+.+|-... ...++.+...+.-.|+++.|.+.++... ....+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566677888887765542 233444332 4566777777777888888887776532 122344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMEL----E--PDSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
...+|.+.|....+++.|+.+..+=+.+ + -....++..|+++|...|..+.|..+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5566777777777778887777665442 1 2245567788888888888888877443
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.14 Score=50.85 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDER-------NIVSYNSMISGFAQ---NGLGEEALNLFRKMKDEGLVPNQITFLS 437 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 437 (649)
+...++-.|....+++.-.++.+.+... ....--...-++.+ .|+.++|++++..+....-.++..|+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555677888888888888887743 11222233445556 7888999999988666666777777777
Q ss_pred HHHHhhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH----HHH---HhC-----CC
Q 006343 438 VLSACNH---------VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAI----DLI---NSM-----TF 496 (649)
Q Consensus 438 ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~----~~~---~~~-----~~ 496 (649)
+...|-. ....++|+..+.+.- .+.|+..+--.++.++..+|...+.. ++. ..+ ..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 6665421 234677777776554 46777655555666666666533322 222 111 12
Q ss_pred CCChhHH--HHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 497 EPPPGVW--GALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 497 ~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
++...-| .+++.++.-.||.+.|.+++++++.+.|
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 3444445 6899999999999999999999999987
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.037 Score=49.72 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHc-----cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHH
Q 006343 328 RPNQLTLSSVLSASAA-----TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNS 402 (649)
Q Consensus 328 ~p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (649)
..+..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+| -+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f-----------Q~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF-----------QA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH-----------HH
Confidence 4455666666666543 45666666777788888888888889888887654 2221 11111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
+..-| ..+.+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23457789999999999999999999999998877654
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.0083 Score=57.29 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHH
Q 006343 471 YACMVDILGRAGSLAEAIDLINSMT-FEPPP----GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS---ATPYVVLSD 542 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 542 (649)
|..-+.++.+.|++++|...|+.+. ..|+. ..+.-++.++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444444555555555555443 22322 244445555556666666666666666555543 333444555
Q ss_pred HHHhcCCchHHHHHHH
Q 006343 543 LYSVIGKKRDGNRVRM 558 (649)
Q Consensus 543 ~~~~~g~~~~a~~~~~ 558 (649)
+|...|++++|.++.+
T Consensus 226 ~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 5666666666666433
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.79 E-value=0.016 Score=52.01 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=78.0
Q ss_pred HHHHHhc--CCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-------------
Q 006343 386 YRIFTNI--DERNIVSYNSMISGFAQ-----NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV------------- 445 (649)
Q Consensus 386 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 445 (649)
...|+.. ..++..+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 35677788888887765 477777778889999999999999999999877542
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 006343 446 ---GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSL 484 (649)
Q Consensus 446 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~ 484 (649)
.+.+-|+.++++|.. +|+-||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 234668999999998 79999999999999999887754
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.26 Score=45.44 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHH-----HH
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNS-----LV 373 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 373 (649)
-+.++..+...|.+.-.+.++++.++...+-+....+.+.+.-.+.|+.+.+...++...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3555666666777777777777777765555666666777777777777777777776665433333333322 33
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 374 SLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
..|.-++++..|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556677777777766653 34455555545555567777777777777764
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.77 E-value=0.021 Score=45.28 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHhCCCCcccH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDV-RPNQLTLSSVLSASAATA--------TLNQGSQIHAHVVKMNMESDVSI 368 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 368 (649)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+-....+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566667777999999999999999999 899999999999877643 24456678888888888888888
Q ss_pred HHHHHHHHHh
Q 006343 369 QNSLVSLYSK 378 (649)
Q Consensus 369 ~~~l~~~~~~ 378 (649)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.74 E-value=0.01 Score=60.07 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCC-C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMPE-K-----NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILF 175 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 175 (649)
......+++......+++.+..++-+... | -..+..++|+.|...|..++++.+++.=...|+-||.+|++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33445556666666667777776665543 1 12355688888888888888888888888888888888888888
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006343 176 EACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRL 216 (649)
Q Consensus 176 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~ 216 (649)
..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888887777655655554444444444
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.012 Score=47.70 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCC
Q 006343 476 DILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA----TPYVVLSDLYSVIGK 549 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 549 (649)
-+++..|+++.|++.|.+.. .+..+..||+-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45778889999998888754 345688899999999999999999999999999654332 347888899999999
Q ss_pred chHHHHHHHHHhhCC
Q 006343 550 KRDGNRVRMKKKLKR 564 (649)
Q Consensus 550 ~~~a~~~~~~~~~~~ 564 (649)
-|.|..-++...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999988666665544
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.29 Score=48.21 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCch--------HHHHHHHHHhcCCchHHHH
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATP--------YVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~--------~~~l~~~~~~~g~~~~a~~ 555 (649)
+...+.+......+.++...|+-... +...++.|...++.++..+
T Consensus 383 ~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 383 RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 33334444444444455555532211 2345555666665555554
No 213
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.019 Score=55.81 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR-AGSLAEAIDLINSMT--FEPPPGVWGALLGA 509 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~-~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~ 509 (649)
.+|..++..+.+.+..+.|+.+|..+.+. -.-+...|.....+-.+ .++.+.|..+|+... +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35777888888888899999999999852 22346667777766445 566666999999875 67788999999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSA---TPYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
+...|+.+.|+.++++++..-|.+. ..|...+..=...|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999776444 46788888888899999999988777653
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.65 E-value=1.1 Score=46.79 Aligned_cols=136 Identities=12% Similarity=0.156 Sum_probs=96.6
Q ss_pred HHHHhhCCC--CCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhh-HHHHHHHHHccCChHHHHHHHHhccc---C
Q 006343 27 FEIFATMPM--RNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVC-SNALISGYLKVGRCEEAARIFEAMVE---K 100 (649)
Q Consensus 27 ~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~---~ 100 (649)
.+.++..+. -+-..|+.+|..-......+.+...+..++...|..+- |.....--.+.|..+.+.++|++.+. .
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~ 111 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL 111 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Confidence 344444332 34557888887665555667777888888876666654 34445555688999999999998764 3
Q ss_pred ChhHHHHHHHHHH-hCCChhHHHHHhccCCC------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006343 101 DVVAWGSMVDGYC-KKGRVIEAREIFDKMPE------KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRG 162 (649)
Q Consensus 101 ~~~~~~~li~~~~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 162 (649)
++..|......+. ..|+.+.-++.|++... .....|...|.--..++++.....+|++.++.
T Consensus 112 SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 112 SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5556666655443 45778888888887664 45557888888888889999999999998764
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.042 Score=52.51 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=58.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhc
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTH 513 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~ 513 (649)
...|++++|...|+.+.+.+ |+ +..+..++.+|...|++++|...|+.+. ..|+ ...+..++..+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 44566666666666666633 33 2455566777777777777777776653 1122 33555566667788
Q ss_pred CChhHHHHHHHHHhccCCCCCc
Q 006343 514 LNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
|+.+.|...++++++..|++..
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCHH
Confidence 8889999999999888886543
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.014 Score=57.21 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEE
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKV 580 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~ 580 (649)
.++.+|...|.+.+++..|++...++++++|+|..++..-+.+|...|.++.|+..++.+.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 356677777888999999999999999999999999999999999999999999955444431
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHhhhh
Q 006343 581 HLFLAGRKSCLDLKEIEVTLQTISKGTKE 609 (649)
Q Consensus 581 ~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 609 (649)
.|..++|...|..+..++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 36667777777777666553
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.5 Score=46.87 Aligned_cols=318 Identities=13% Similarity=0.112 Sum_probs=183.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHhhCCC--CChhHHHHHHHHHHcCC
Q 006343 208 SIITMYGRLGFMDEANKVFSMMSKRD---AVSWNSLISGYVHNGE---IEEAYRLFERMPG--KDFVSWTTMITGFSSKG 279 (649)
Q Consensus 208 ~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 279 (649)
.+++-+...+.+..|+++-.-+..|. ...+.....-+.+..+ -+-+..+-+++.. .+..+|..+..-...+|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 46777778888999999888887664 4455555666665532 2223333344444 35567788888888899
Q ss_pred ChHHHHHHHhhCCCC--------ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 006343 280 NLEKSIELFNMMPEK--------DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGS 351 (649)
Q Consensus 280 ~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 351 (649)
+.+.|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.+.+. .+...|... ..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhh
Confidence 999999888754432 2223344444555556665555555554432 111111111 11223344
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHh-c------CCCChHHHHHHHHHHHhcCC----------HH
Q 006343 352 QIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTN-I------DERNIVSYNSMISGFAQNGL----------GE 414 (649)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~li~~~~~~g~----------~~ 414 (649)
.+|.+..+..-. ..|-+.|-...+.. +...|.. - .+.-..........+.+... ..
T Consensus 593 ~lY~~~~r~~~~------~~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDR------ATLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhch------hhhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 455543332110 11222222222222 2111110 0 01111112222333333222 11
Q ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 415 EALNLFRKMKD-EGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINS 493 (649)
Q Consensus 415 ~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 493 (649)
+-+++.+.+.. .|..-...|.+-.+.-|...|...+|.++-...+ .|+...|-.-+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 22233333332 3334455567777778889999999988765443 38888888888999999999999998887
Q ss_pred CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 494 MTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 494 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
+. .+.-|.-+..+|.+.|+.++|.+++-+.-.+ .-...+|.+.|++.+|.++-
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 65 2556777889999999999999887665432 25778899999999998854
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=1.4 Score=46.53 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=148.4
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCCh------------hhHHHHHHHHHccCChHH
Q 006343 22 SIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDS------------VCSNALISGYLKVGRCEE 89 (649)
Q Consensus 22 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------------~~~~~ll~~~~~~~~~~~ 89 (649)
.+++|.+..+.-|. +..|..+...-...-.++-|...|-+.... +.. ..-.+-++++ -|.+++
T Consensus 678 gledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~--~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAF--YGEFEE 752 (1189)
T ss_pred chHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhh--hcchhH
Confidence 45777777665544 445665555444444445555555444221 111 1111222333 588999
Q ss_pred HHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCC-----CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006343 90 AARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPE-----KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGM 164 (649)
Q Consensus 90 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 164 (649)
|.+++-.+-.+|. -|.++.+.|++-...++++.-.. .-..+|+.+...+.....+++|.+.|..-...
T Consensus 753 aek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-- 825 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-- 825 (1189)
T ss_pred hhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence 9998887766553 45677788888888888765332 11247888888888888888888887654321
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 006343 165 AFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGY 244 (649)
Q Consensus 165 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 244 (649)
...+.++.+...+++-+.+-. .++.+....-.+.+++.+.|.-++|.+.|-+-..|- ..+..|
T Consensus 826 -------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tC 888 (1189)
T KOG2041|consen 826 -------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTC 888 (1189)
T ss_pred -------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHH
Confidence 112333333333333222221 234556666778888999999998888887665543 234567
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHH-HHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006343 245 VHNGEIEEAYRLFERMPGKDFVSWTTMI-TGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEML 323 (649)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (649)
...+++.+|.++-+...-|.+.+.-+-- .-+...++.-+|++ .+.+.|.+-+|-+++.+|.
T Consensus 889 v~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe------------------~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIE------------------KDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHH------------------HhhhcccchhHHHHHHHHh
Confidence 7777888888887766655544332211 11222333333333 3455666667777777775
Q ss_pred H
Q 006343 324 R 324 (649)
Q Consensus 324 ~ 324 (649)
+
T Consensus 951 e 951 (1189)
T KOG2041|consen 951 E 951 (1189)
T ss_pred H
Confidence 4
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.11 Score=53.71 Aligned_cols=184 Identities=11% Similarity=0.097 Sum_probs=96.8
Q ss_pred HHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCC--------------CCcccHHHHHHHH
Q 006343 78 ISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPE--------------KNVVAWTAMVDGY 143 (649)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~ 143 (649)
...|+-.|.+.+|.++|.+--.. |.-+.+|.....++.|.++...-.. +|+.--.+....+
T Consensus 639 A~~~Ay~gKF~EAAklFk~~G~e-----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmL 713 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRSGHE-----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEML 713 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHcCch-----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHh
Confidence 35577778888888888765331 2334444444445555444432211 1222222333445
Q ss_pred HhcCChhHHHHHHHH------HHhCCCC---CChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006343 144 MKVDCFEDGFDLFLS------MRRGGMA---FNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYG 214 (649)
Q Consensus 144 ~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~ 214 (649)
...|+.++|+.+.-+ +.+-+-+ .+..+...+..-+.+...+..|-++|..+-.. .+++.+..
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv 784 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV 784 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence 556666666655321 1111111 22334444444444555566666666555322 34666677
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCC
Q 006343 215 RLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPE 293 (649)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (649)
..+++++|..+-++.++--...|-.....++.+.++++|.+.| .+.|+..+|.++++++..
T Consensus 785 e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf------------------hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF------------------HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH------------------HHhcchHHHHHHHHHhhh
Confidence 7777777777777766633333444455556666666665554 355666666666666543
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=96.38 E-value=0.044 Score=55.29 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhc----------cCcHHHHHHHHHHhH
Q 006343 398 VSY--NSMISGFAQN-----GLGEEALNLFRKMKD-EGLVPNQITFLSVLSACNH----------VGLVEEGFIYFKSMK 459 (649)
Q Consensus 398 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~----------~g~~~~a~~~~~~~~ 459 (649)
..| ..++.|.... ...+.|+.+|.+... ..+.|+...-.+.+.-|.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 134677778888772 2356665443333333321 122344555555554
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 460 TLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 460 ~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
+ +.| |+.....+..++.-.|+++.|..+|++.. ..|| +.+|......+...|+.++|.+..+++++++|.-..+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4 444 46666666666666777777777777655 4555 5566666666667777777777777777777765554
Q ss_pred HHHHHHH-HHhcCCchHHHHH
Q 006343 537 YVVLSDL-YSVIGKKRDGNRV 556 (649)
Q Consensus 537 ~~~l~~~-~~~~g~~~~a~~~ 556 (649)
-+.-.++ ..-....|+|+++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHH
Confidence 4433333 2223445566663
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.049 Score=47.18 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=67.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLA 522 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 522 (649)
...|+.+.+...++.+...+.-++=..... ........+.++.+- ..+...++..+...|+++.|...
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHHH
Confidence 455677777777777666443222111000 122222333333322 23455677778899999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 523 AQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
+++++..+|-+-..|..+..+|...|+..+|.++.+.+
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999955444
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.22 E-value=0.37 Score=48.87 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC
Q 006343 447 LVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGR---------AGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~---------~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g 514 (649)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.+... .+.|+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356678888888744457776 5555555444321 234556666666554 3445667777777777778
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhhC
Q 006343 515 NLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKLK 563 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 563 (649)
+++.|...+++++.++|+.+.++...+.+..-.|+.++|.+ +.+.++-.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999988 66656543
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.18 E-value=0.98 Score=41.55 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHhC
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVR-P-NQLTLSSVLSASAATATLNQGSQIHAHVVKMN 361 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (649)
....+.+.|++.+|+..|+++...... | -......+..++.+.|+.+.|...++..++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455666666666666666653111 0 11223344445555555555555555555443
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.13 E-value=1.7 Score=43.53 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhH-HHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEG-LVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEH-YAC 473 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~ 473 (649)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+.+.+.-+ ..|+..-|..+|+.-... -||... -..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34566667776666666777778888887777 456666666666533 347777777777765552 244333 344
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006343 474 MVDILGRAGSLAEAIDLINSMT--FEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
..+.+.+-++-..|..+|+... +..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5666777788888888887543 2333 4577777777778888888888888888888854
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=0.4 Score=44.11 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=83.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh---
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDE--RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN--- 443 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--- 443 (649)
...+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|+++.|...++++++.-..-....+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3344555666666666666552 11 12344556666677777777777777666421111122222221111
Q ss_pred ----------ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 006343 444 ----------HVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTH 513 (649)
Q Consensus 444 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~ 513 (649)
..+...+|...|+.+++.+ |+ .....+|...+..+...- ...--.++.-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~-------------S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRY---PN-------------SEYAEEAKKRLAELRNRL-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHC---cC-------------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 1122334455555544432 22 223333333333221000 00111244567789
Q ss_pred CChhHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCchHHHH
Q 006343 514 LNLDLAKLAAQHLMELEPDSAT---PYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 555 (649)
|.+..|..-++.+++--|+.+. +...++..|.+.|..+.+..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999998886543 35778888999998874443
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.01 E-value=1.3 Score=41.13 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNID-----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS- 440 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 440 (649)
.........+...+++..+...+.... ......+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455555666666666666555543 23334455555556666666677777766665432221 11111222
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHhc
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEP----GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP--PGVWGALLGAGRTH 513 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~--~~~~~~ll~~~~~~ 513 (649)
++...|.++.+...+..... ..| ....+......+...++.++|...+.... ..++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56667777777777776643 222 23333334444556677777777776654 2222 45666666677777
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 006343 514 LNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
++.+.|...+..+++..|.....+..++..+...|.++++...
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHH
Confidence 7777777777777777776555666666666666667777763
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.16 Score=48.25 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHhHHhcCCCC-ChhH
Q 006343 395 RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV---GLVEEGFIYFKSMKTLYNIEP-GPEH 470 (649)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~p-~~~~ 470 (649)
.|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++..+ .+..++..+|+++.+ ..| ++..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 455666666666666666666666666666531 33344444444443222 233455555555554 233 2444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 471 YACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
..-|...+...|++.+|...++.|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.058 Score=53.10 Aligned_cols=135 Identities=15% Similarity=-0.035 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGS 483 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~ 483 (649)
...|.+.|++..|..-|++.... |. +...-+.++..... ..-...+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876552 00 01111112222211 1223456677888899999
Q ss_pred HHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHH
Q 006343 484 LAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKK 560 (649)
Q Consensus 484 ~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 560 (649)
+.+|++..++.. .++|.....--..+|...|+++.|+..++++++++|+|..+-..|+.+-.+..+..+..+ ++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988765 355677777778899999999999999999999999999999999888888777777655 66655
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.0089 Score=45.26 Aligned_cols=27 Identities=11% Similarity=-0.130 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
++..+...+...|++++|++.++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444555555555555555555443
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.0098 Score=45.01 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc----CC---CCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMEL----EP---DSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
.+++.+...+...|++++|+..+++++++ .| .-..++..++.+|...|++++|.+..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46677778888888888888888888763 22 225678899999999999999999443
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.82 Score=46.57 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCh--hHHHHHHHHHHh
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPP--GVWGALLGAGRT 512 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~--~~~~~ll~~~~~ 512 (649)
.+..++-+.|+.++|++.|+.|.+++...........|+..|...+.++++..++.+.. .-|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34445556666666666666666543221224455566777777777777777776654 12332 244444433333
Q ss_pred cCC---------------hhHHHHHHHHHhccCCCCCch
Q 006343 513 HLN---------------LDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 513 ~g~---------------~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.++ -..|.++..++++.+|.-+..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 332 134668899999999955443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.80 E-value=2.2 Score=42.04 Aligned_cols=282 Identities=17% Similarity=0.141 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHhhCC---CCChhhHHHHHHH--HHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHcCCChHHHHHH
Q 006343 216 LGFMDEANKVFSMMS---KRDAVSWNSLISG--YVHNGEIEEAYRLFERMPGKDFV---SWTTMITGFSSKGNLEKSIEL 287 (649)
Q Consensus 216 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~ 287 (649)
.|+-..|++.-.+.. ..|-...-.++.+ -.-.|++++|.+-|+.|...... -...|.-..-+.|..+.|...
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 455555555443332 2333333333332 23457777777777777642211 122222333456777777777
Q ss_pred HhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---ccCChhHHHHHHHHHH
Q 006343 288 FNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKD-VRPNQL--TLSSVLSASA---ATATLNQGSQIHAHVV 358 (649)
Q Consensus 288 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~---~~~~~~~a~~~~~~~~ 358 (649)
-+..-.. -...+.+.+...+..|+++.|+++.+.-.... +.++.. .-..++.+-+ -..+...++..-.+..
T Consensus 177 Ae~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 177 AERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred HHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 6665542 34578888999999999999999998776543 344443 2222333221 1234555565555555
Q ss_pred HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC-HHH
Q 006343 359 KMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKD-EGLVPN-QIT 434 (649)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~t 434 (649)
|.....-+. --.-...+.+.|++.++-++++.+- +|.+..|. .|....-.+.++.-+++... ..++|| ...
T Consensus 257 KL~pdlvPa-av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes 331 (531)
T COG3898 257 KLAPDLVPA-AVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAES 331 (531)
T ss_pred hcCCccchH-HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHH
Confidence 543321111 1223467888899999988888876 34444443 33433334455555555443 235565 456
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCChhHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR-AGSLAEAIDLINSMTFEPPPGVWGA 505 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 505 (649)
...+..+-...|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+....|....|..
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 66677777888888888876665554 68888888888887654 4888888888877654444444543
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.58 E-value=1.6 Score=40.72 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSAT---PYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
.+..-|.+.|....|..-++.+++--|+.+. ++..+.++|...|..++|.+..+.+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3455678999999999999999997765544 4567778899999999999999888753
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.57 E-value=0.02 Score=35.03 Aligned_cols=32 Identities=25% Similarity=0.114 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 47888999999999999999999999999995
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.57 E-value=2.5 Score=41.09 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHccCChhH---HHHHHHHHHHhCCCCcccHHHHHHH
Q 006343 311 QYEEAFRWFIEMLRK--------DVRPNQ-----LTLSSVLSASAATATLNQ---GSQIHAHVVKMNMESDVSIQNSLVS 374 (649)
Q Consensus 311 ~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~ 374 (649)
+++.|...+++..+. ...|+. .++..++.++...+..+. +..+.+.+.... ...+.++-.-+.
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~ 129 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLE 129 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 666666665554332 122332 345555666666555443 333444443322 223444445566
Q ss_pred HHHhcCCHHHHHHHHHhcCC-C--ChHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 006343 375 LYSKCGNVVDAYRIFTNIDE-R--NIVSYNSMISGF---AQNGLGEEALNLFRKMKDEGLVPNQ 432 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 432 (649)
.+.+.++.+.+.+++.+|.. . ....+..++..+ ..+ ....|...+..++...+.|..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 66667777777777777662 1 223444444443 332 335566666666655455544
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.14 Score=44.28 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH----HhcCCCCChhH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMK----TLYNIEPGPEH 470 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 470 (649)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+. ++.|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666777777766666653 4455666666667777777777766666543 34567776554
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.52 E-value=0.082 Score=51.75 Aligned_cols=272 Identities=14% Similarity=0.092 Sum_probs=149.3
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhh-------CCC--CChhhHHHHHHHH
Q 006343 177 ACGRFFRYREGVQVHGLVSRFGFDY---DIILGNSIITMYGRLGFMDEANKVFSM-------MSK--RDAVSWNSLISGY 244 (649)
Q Consensus 177 a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~y~~~g~~~~A~~~~~~-------~~~--~~~~~~~~li~~~ 244 (649)
-+++.|+...+..+|+.+++.|.+. =..+|..|-++|.-.+++++|.+.-.. |.. ....+-..|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 3578899999999999999988532 244666777777778888888765321 111 1222333444455
Q ss_pred HhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHcCCChHHHHHHHhhCCCC-ChhhHHHHHHHHhcCCCHHH
Q 006343 245 VHNGEIEEAYRLFERMPG---------KDFVSWTTMITGFSSKGNLEKSIELFNMMPEK-DDVTWTAIISGFVNNEQYEE 314 (649)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 314 (649)
-..|.+++|+-.-.+-.. .....+..|...|...|+.-. .+.| +.-.++.=+ ...++.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-------~~~pee~g~f~~ev-----~~al~~ 173 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-------LEAPEEKGAFNAEV-----TSALEN 173 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-------CCChhhcccccHHH-----HHHHHH
Confidence 556666666544322110 111233334444433332100 0000 000000000 001223
Q ss_pred HHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHH----hCCC-CcccHHHHHHHHHHhcCCHHH
Q 006343 315 AFRWFIEMLR----KDVR-PNQLTLSSVLSASAATATLNQGSQIHAHVVK----MNME-SDVSIQNSLVSLYSKCGNVVD 384 (649)
Q Consensus 315 A~~~~~~m~~----~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~ 384 (649)
|.++|.+=++ .|-+ .--..|..+-..|.-+|+++.++..|+.-.. .|-. .....+..|.+++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 4444433221 1100 0112344445555567788888888874322 2321 223456677888888899999
Q ss_pred HHHHHHhcC-------CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHhhccCcHHH
Q 006343 385 AYRIFTNID-------ERN--IVSYNSMISGFAQNGLGEEALNLFRKMKD----E-GLVPNQITFLSVLSACNHVGLVEE 450 (649)
Q Consensus 385 A~~~~~~~~-------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~t~~~ll~a~~~~g~~~~ 450 (649)
|.+.|+... .+. ..+.-+|...|.-...+++|+.++.+=+. . ...-....+.+|..++...|.-++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 988887643 222 23566677788878888888888776432 1 122345678888889998999898
Q ss_pred HHHHHHHhHH
Q 006343 451 GFIYFKSMKT 460 (649)
Q Consensus 451 a~~~~~~~~~ 460 (649)
|+.+.+...+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 8877665443
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.49 E-value=0.03 Score=34.12 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888999999999999999999999964
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.48 E-value=0.074 Score=53.65 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP----GVWGALLGAGRTHLNLDLAKLAAQHLMEL 529 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 529 (649)
+...+..+..+|...|++++|+..+++.. ..|+. ..|.++..+|...|++++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36677778888888888888888887744 56663 34888888888888888888888888886
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.39 Score=45.50 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=83.9
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH---HHHHHhcCChh
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGAL---LGAGRTHLNLD 517 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~ 517 (649)
.....|+..++...|+..... .+-+.+.-..|+..|...|+.++|..++..+|.+....-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888888762 2334677778889999999999999999999854443333331 22222333333
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 518 LAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
.. ..+++-+..+|+|...-..|+..|-..|+.++|.+ +...++.
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 23455566799999999999999999999999999 6666653
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.41 E-value=2.2 Score=39.50 Aligned_cols=219 Identities=17% Similarity=0.122 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006343 310 EQYEEAFRWFIEMLRKDVR-PNQLTLSSVLSASAATATLNQGSQIHAHVVKM-NMESDVSIQNSLVSLYSKCGNVVDAYR 387 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (649)
+....+...+......... ............+...+.+..+...+...... ........+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443211 12344555555555666666666555554442 222344455556666667777777777
Q ss_pred HHHhcCC--CC-hHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 388 IFTNIDE--RN-IVSYNSMIS-GFAQNGLGEEALNLFRKMKDEGLVP----NQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 388 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
.+..... ++ ......... .+...|+++.|...+.+... ..| ....+......+...+..+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776653 22 122333333 68889999999999999865 233 23344444444677889999999999888
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 460 TLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 460 ~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.. ... ....+..+...+...|..++|...+.... ..|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 72 333 36778888889999999999999988765 3444 455666666666777899999999999999995
No 242
>PRK09687 putative lyase; Provisional
Probab=95.32 E-value=3 Score=40.46 Aligned_cols=237 Identities=9% Similarity=0.020 Sum_probs=110.3
Q ss_pred ccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCChhhHHH
Q 006343 98 VEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCF----EDGFDLFLSMRRGGMAFNSITLTI 173 (649)
Q Consensus 98 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ 173 (649)
..+|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|.. .+++..+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3445555555555555555433222222222234444444445555555543 3455555555332 234444444
Q ss_pred HHHHHhccCChHH--HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-CH
Q 006343 174 LFEACGRFFRYRE--GVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNG-EI 250 (649)
Q Consensus 174 ll~a~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 250 (649)
.+.+++..+.... .......+...-..++..+-...+..+++.|+.+....+...+..+|...-...+.++.+.+ ..
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 4444444322110 11122222222233455666666666677776444444444444455544444444444432 12
Q ss_pred HHHHHHH-hhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 006343 251 EEAYRLF-ERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRP 329 (649)
Q Consensus 251 ~~A~~~~-~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 329 (649)
..+...+ ..+..++..+-...+.++.+.|+......+.+.+..++ .....+.++.+.|+. +|+..+.++.+. .|
T Consensus 191 ~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~ 265 (280)
T PRK09687 191 PDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FD 265 (280)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CC
Confidence 2333333 33344566666666666666666443333444443333 233455666666664 566666666653 33
Q ss_pred CHHHHHHHHHHH
Q 006343 330 NQLTLSSVLSAS 341 (649)
Q Consensus 330 ~~~t~~~ll~~~ 341 (649)
|...-...+.+|
T Consensus 266 d~~v~~~a~~a~ 277 (280)
T PRK09687 266 DNEIITKAIDKL 277 (280)
T ss_pred ChhHHHHHHHHH
Confidence 555444444444
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.22 E-value=0.15 Score=42.41 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHh
Q 006343 463 NIEPGPEHYACMVDILGRAGSLAEAIDLINSMT----FEPPPGVWGALLGAGRT 512 (649)
Q Consensus 463 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~~~~~~~ll~~~~~ 512 (649)
.+.|+.....+++.+|+..|++..|+++++... ++-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455677777777777777777777777766542 44456777777765543
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.19 E-value=0.27 Score=40.93 Aligned_cols=97 Identities=9% Similarity=0.143 Sum_probs=64.4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
..++.+++-++++.|+++....+.+..=..++ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556667777777777776666654321111 11111111 111234668899999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006343 446 GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDIL 478 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l 478 (649)
|++..|+++.+...+.|+++-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999877888888777643
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.08 E-value=0.85 Score=39.29 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=68.7
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
.-...++.+++..++..+.- +.|. +++-..-+.++.+.|++.+|..+++++. ..|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33566788899998888876 6786 5566666778889999999999999987 34555556778887876555444
Q ss_pred HHHHHHHHhccCCCCCchHHHHHH
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
=...++.+++-.| ++.+..++..
T Consensus 96 Wr~~A~evle~~~-d~~a~~Lv~~ 118 (160)
T PF09613_consen 96 WRRYADEVLESGA-DPDARALVRA 118 (160)
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHH
Confidence 5556777777666 4444444433
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.08 E-value=0.2 Score=51.80 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=70.8
Q ss_pred HHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 006343 407 FAQNGLGEEALNLFRK-MKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLA 485 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~ 485 (649)
....|+++++.++... -.-..++ ..-...++.-+.+.|..+.|+++-+. +. .-.++..+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D----------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD----------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC----------hH---HHhHHHHhcCCHH
Confidence 3445666666555541 1111111 23345555556667777777765322 21 1345566777777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 006343 486 EAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKR 564 (649)
Q Consensus 486 ~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (649)
.|.++.++.. +...|..|...+..+|+++.|+++++++- -+..|+.+|...|+-+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777766643 56677777777777788777777777554 34456677777777655555555444433
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.03 E-value=0.23 Score=46.24 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=85.9
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc---------
Q 006343 384 DAYRIFTNID--ERNIVSYNSMISGFAQN-----GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL--------- 447 (649)
Q Consensus 384 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 447 (649)
..++.|.... ++|-.+|-+++..+..+ +.++--...++.|.+.|+.-|..+|..||..+-+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888898888888754 5667777788999999999999999999988765322
Q ss_pred -------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHhCC
Q 006343 448 -------VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLA-EAIDLINSMT 495 (649)
Q Consensus 448 -------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~-~A~~~~~~~~ 495 (649)
-+-++.++++|.. +|+.||.++-..++.+++|.|..- +...+.--||
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2347899999987 899999999999999999998654 3334433343
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.01 E-value=4.5 Score=40.74 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHhhCCC--CCcchHHHHHHHHHhcCChhhHHHHHhhcccCCC-ChhhHHHHHHHHHccCChHHHHHHHHhcc
Q 006343 26 AFEIFATMPM--RNAVSYAAMITGFVRRGMFYEAEELYVNMPARWR-DSVCSNALISGYLKVGRCEEAARIFEAMV 98 (649)
Q Consensus 26 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 98 (649)
-.++=+++.. .|..+|-.||.-|..+|..++..+++++|..-.| -+.+|..-+++-....++.....+|.+.+
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3344444442 2445566666666666666666666666655311 12234444444444455555555555443
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=7.2 Score=42.57 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=104.8
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH----HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAM----VDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
...-+++..+...++-|+.+-..-.. +..+-..+ ..-+.+.|++++|...|-+-... +.|. .+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 44556666777777777777654332 22222222 23445678888888887666532 3332 23444444
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHHHHHHHHhcCCHHHHHHHHhh
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAV-SWNSLISGYVHNGEIEEAYRLFER 259 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 259 (649)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+...+.... -....+..+.+.+-.++|.-+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 44555555667777777754 3334467888999999988888887776632111 234555666666666666655544
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 006343 260 MPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK 294 (649)
Q Consensus 260 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (649)
... +..+... .+-..+++++|.+.+..++-+
T Consensus 489 ~~~-he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 489 FKK-HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred hcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 433 2322222 234567888888888888754
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=2.6 Score=40.13 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=112.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 384 DAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
...+.+++...+....--.-.......|++.+|..+|+...... +-+...-..+..++...|+++.|..++..+-..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--
Confidence 34444555444322222223345667888899999888888763 333556667778888899999999888766442
Q ss_pred CCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCCchHHH
Q 006343 464 IEPGPE-HYACMVDILGRAGSLAEAIDLINSMTFEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMEL--EPDSATPYVV 539 (649)
Q Consensus 464 ~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~ 539 (649)
..-+.. ....-+..+.++....+..++.......| |...-..|...+...|+.+.|...+-.++.. .-++...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111211 12344667777777776666666665555 4555666777788888988888777777663 3446677777
Q ss_pred HHHHHHhcCCchHHHH-HHHHHh
Q 006343 540 LSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 540 l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
|..++...|.-|.+.. .|+.|.
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL~ 300 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKLY 300 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 8888877776655444 666553
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=2.7 Score=38.67 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCCch
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-------FEPPP-GVWGALLGAGRTHLNLDLAKLAAQHLME----LEPDSATP 536 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 536 (649)
+.|.....+|.|..+++||-..+.+-. .-|+. ..+.+.+-.+....|+..|++.++.--+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555666777777777666655432 11222 1233444445555677777777776544 45666666
Q ss_pred HHHHHHHHHhcCCchHHHHH
Q 006343 537 YVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~ 556 (649)
...|...|- .|+.|++.++
T Consensus 231 lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHH
Confidence 666666654 3666665553
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.52 E-value=10 Score=43.26 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcC--ChhhHHHHHhhcccC----------------CCChhhHHHHHHHHHccCChHHHHHHHHhcccCCh
Q 006343 41 YAAMITGFVRRG--MFYEAEELYVNMPAR----------------WRDSVCSNALISGYLKVGRCEEAARIFEAMVEKDV 102 (649)
Q Consensus 41 ~~~li~~~~~~g--~~~~A~~~~~~m~~~----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 102 (649)
.-.+|..|.+.+ ..++|+....+.... .+-...|++.+.. =|++.|..+-+.- +.|+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgt----YDl~Lal~VAq~S-qkDP 867 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGT----YDLDLALLVAQKS-QKDP 867 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcc----cchHHHHHHHHHh-ccCh
Confidence 346777887776 556666655555421 1111122222222 2455555444432 3455
Q ss_pred hHHHHHHHHHHh-------------CCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 006343 103 VAWGSMVDGYCK-------------KGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSI 169 (649)
Q Consensus 103 ~~~~~li~~~~~-------------~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 169 (649)
.-|-.+++-+-+ .+++++|+.-+.++. ...|.-.+.---+.|.+.+|+.++ +|+..
T Consensus 868 kEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e 936 (1265)
T KOG1920|consen 868 KEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSE 936 (1265)
T ss_pred HHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHH
Confidence 555444443332 245666665555443 334444555555667777777663 67777
Q ss_pred hHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006343 170 TLTILFEACGR----FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYV 245 (649)
Q Consensus 170 t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 245 (649)
++..+..+|+. ...++.| .-+|.++|+.++|... |.
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~A----------------------al~Ye~~GklekAl~a------------------~~ 976 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEA----------------------ALMYERCGKLEKALKA------------------YK 976 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHH----------------------HHHHHHhccHHHHHHH------------------HH
Confidence 77666655543 2233332 3356666666666543 44
Q ss_pred hcCCHHHHHHHHhhCCCCChhHH---HHHHHHHHcCCChHHHHHHHhhCCC
Q 006343 246 HNGEIEEAYRLFERMPGKDFVSW---TTMITGFSSKGNLEKSIELFNMMPE 293 (649)
Q Consensus 246 ~~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~ 293 (649)
.+|++.+|+.+-.++...-.... ..|+.-+...++.-+|-++..+...
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 45666666666666554322222 4555555666666665555554443
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.4 Score=44.98 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLV--PNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMV 475 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 475 (649)
.|+.-+. +.+.|++.+|...|...++.... -....+--|..++...|++++|..+|..+.+.+.-.|. ++.+--|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554444 34556678888888877775211 01123444666777777888888777777776666665 56677777
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 006343 476 DILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~ 495 (649)
....+.|+.++|...+++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 77777777777777666654
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.42 E-value=0.48 Score=45.87 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=21.9
Q ss_pred HhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhHH
Q 006343 306 FVNNEQYEEAFRWFIEMLRK--DVRPNQLTLSSVLSASAATATLNQG 350 (649)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a 350 (649)
+.+..+.++|+..+.+-+.. ...-...++..+..+.+..|..+++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 34556677777776665542 1111123444444454554444443
No 255
>PRK09687 putative lyase; Provisional
Probab=94.39 E-value=5.3 Score=38.77 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006343 263 KDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQY----EEAFRWFIEMLRKDVRPNQLTLSSVL 338 (649)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 338 (649)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444333222222222334444444445555555542 3455555555332 34444444444
Q ss_pred HHHHcc
Q 006343 339 SASAAT 344 (649)
Q Consensus 339 ~~~~~~ 344 (649)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 444443
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.9 Score=35.62 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=14.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006343 135 AWTAMVDGYMKVDCFEDGFDLFLSMRRGG 163 (649)
Q Consensus 135 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 163 (649)
....++..+.+.+.+.....+++.+...+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 34445555555555555555555555443
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.30 E-value=0.21 Score=44.08 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 476 DILGRAGSLAEAIDLINSMT-FEPP------PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~-~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
.-+...|.+++|..-|..+. .-|. ...|..-..+..+.+..+.|+..+.+++++.|....++..-+.+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44567788888887776543 2222 2344444556668899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhC
Q 006343 549 KKRDGNRVRMKKKLK 563 (649)
Q Consensus 549 ~~~~a~~~~~~~~~~ 563 (649)
++++|.+-++.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999966666553
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.20 E-value=4.2 Score=40.79 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006343 309 NEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSA 340 (649)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 340 (649)
.|+.++|++++..+....-.++..|+..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 55666666666554444444555555444443
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=94.01 E-value=1.5 Score=38.04 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=38.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAE 486 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~ 486 (649)
+.+.|++++|..+|+-+...+ .-|..-+.+|..+|-..+.+++|+..|....... .-|+..+-.+...|...|+.++
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555554432 1122223333334444555555555554443311 1122333334455555555555
Q ss_pred HHHHHHhCC
Q 006343 487 AIDLINSMT 495 (649)
Q Consensus 487 A~~~~~~~~ 495 (649)
|+..|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555554443
No 260
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.94 E-value=12 Score=41.16 Aligned_cols=156 Identities=12% Similarity=0.002 Sum_probs=74.4
Q ss_pred hHHHHHHHHH-ccCChHHHHHHHHhccc----CCh-----hHHHHHHHHHHhCCChhHHHHHhccCCC----CCcccHHH
Q 006343 73 CSNALISGYL-KVGRCEEAARIFEAMVE----KDV-----VAWGSMVDGYCKKGRVIEAREIFDKMPE----KNVVAWTA 138 (649)
Q Consensus 73 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~ 138 (649)
+...+.+.+. ...+++.|+..+.+... ++. .....++..|.+.+... |....++..+ .....|.-
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444455544 45667777777776531 111 12234455565555544 6666655432 11122222
Q ss_pred HH-----HHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhc--cCChHHHHHHHHHHHHcCC---------
Q 006343 139 MV-----DGYMKVDCFEDGFDLFLSMRRGG---MAFNSITLTILFEACGR--FFRYREGVQVHGLVSRFGF--------- 199 (649)
Q Consensus 139 li-----~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~--------- 199 (649)
.. ..+...+++..|++.++...... ..|-...+..++.+... .+..+.+.+....+.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22 12222367777777777665432 23334445555555542 3334445555444433211
Q ss_pred CCChhhHHHHHHHHH--hcCCHHHHHHHHhhC
Q 006343 200 DYDIILGNSIITMYG--RLGFMDEANKVFSMM 229 (649)
Q Consensus 200 ~~~~~~~~~l~~~y~--~~g~~~~A~~~~~~~ 229 (649)
.|...++..+++.++ ..|+++.+...++++
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223455555555443 456655665554444
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.92 E-value=1.1 Score=37.79 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCC----CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch---HHHHHHHHHh
Q 006343 475 VDILGRAGSLAEAIDLINSMT----FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP---YVVLSDLYSV 546 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 546 (649)
.....+.|++++|.+.|+.+. ..| ...+-..|+.++...+++++|...+++.+++.|.++.. +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334456778888887777664 222 23345567778888999999999999999988877643 3334444444
Q ss_pred c
Q 006343 547 I 547 (649)
Q Consensus 547 ~ 547 (649)
+
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.87 E-value=2.3 Score=44.22 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=62.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHH
Q 006343 74 SNALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGF 153 (649)
Q Consensus 74 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 153 (649)
.+.+++-+-+.|..+.|+++-.. + ..-.....++|+++.|.++.++.. +...|..|.....++|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555566666666554322 1 233344456666666666655544 3446666666666666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 006343 154 DLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFS 227 (649)
Q Consensus 154 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 227 (649)
+.|++... |..++-.+...|+.+.-.++.......|- +|.-...+.-.|+.++..+++.
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 66655542 33333334444555444444444444431 2333333444455555554443
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=0.55 Score=44.09 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=69.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-hhHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT----FEPP-PGVWGALL 507 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~-~~~~~~ll 507 (649)
.|..-+. +...|++..|..-|...++.|--.+ ....+--|...+...|++++|...|..+. ..|- +...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544444 4456779999999988888542222 24556668888888888888888776553 2222 34555566
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
......|+.+.|...++++++--|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66678888888888888888888865544
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.53 E-value=6.5 Score=36.78 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQ---ITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|.+.|..++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345567777777777777777775 22222 233444456666666666666544443
No 265
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=14 Score=40.15 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHH
Q 006343 480 RAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAK 520 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 520 (649)
+-+++++|.++.++ ..|...|..|++-+..+-.+-.+.
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 33444444444443 578899999999887766555554
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=14 Score=40.14 Aligned_cols=171 Identities=12% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHHHHhcCChhhHHHHHhhcccCCC---ChhhHHHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHH
Q 006343 45 ITGFVRRGMFYEAEELYVNMPARWR---DSVCSNALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEA 121 (649)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 121 (649)
|.-+.+.+.+++|+..-+......| -.......|..+.-.|++++|-...-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4557788899999998888776644 2334667777888889999998888888888888888888888887776554
Q ss_pred HHHhccCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 006343 122 REIFDKMPE-KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFD 200 (649)
Q Consensus 122 ~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 200 (649)
..+.=.-+. -+...|..++-.++. .+. .-|.+.+.. -+++...-..++++- ..+..+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISAT------------EPQIKQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhhc------------chHHHhh--c
Confidence 333222221 234457777766665 222 222222221 112222222222211 1111111 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 006343 201 YDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAV 235 (649)
Q Consensus 201 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 235 (649)
-+..+.-.|+..|...+++..|.+.+-...++++.
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 12233344888899999999999988887766543
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=15 Score=40.26 Aligned_cols=52 Identities=8% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006343 372 LVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKM 423 (649)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 423 (649)
++..+.+..+.+.+..+.+...+.++..|-.++..+++.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 4555666667777777777776667777877777777777555544444433
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.26 E-value=0.46 Score=38.84 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=42.1
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCh-h---HHHHHHHHHHhcC
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPP-G---VWGALLGAGRTHL 514 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~-~---~~~~ll~~~~~~g 514 (649)
.+..|+.+.|++.|.+... +-| +...|+.-..++.-+|+.++|++=+++.. ..|.. . .+..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455555555555555544 223 35555555555555555555555555433 11111 1 2222233455666
Q ss_pred ChhHHHHHHHHHhccC
Q 006343 515 NLDLAKLAAQHLMELE 530 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~ 530 (649)
+.+.|..-|+.+-++.
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666555554433
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=4.4 Score=37.38 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhcccCC--hhHHHHHHHHHHhCCCh
Q 006343 41 YAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAMVEKD--VVAWGSMVDGYCKKGRV 118 (649)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 118 (649)
|..-..+|....++++|...+.+..+...+..++-...+++ +.|..+..++..-+ +..++.-..+|..+|.+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKay------EqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAY------EQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 44445566667777777666655543212222222222222 33333333333211 23456666778888887
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006343 119 IEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMR 160 (649)
Q Consensus 119 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 160 (649)
+-|-..+++.- -...+-++++|+.+|++..
T Consensus 108 dtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 108 DTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred chHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 77766555421 1234556677777766653
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.19 E-value=6.8 Score=41.30 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=66.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCChh
Q 006343 445 VGLVEEGFIYFKSMKTLYNIEPGPEHY-ACMVDILGRAGSLAEAIDLINSMTF------EPPPGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~l~~~g~~~~A~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~ 517 (649)
....+.+.++++.+.+. -|+...| -.-..++...|++++|.+.++++.. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566677777777663 3553333 3344566667777777777775431 111223334555566777888
Q ss_pred HHHHHHHHHhccCCCCCchH-HHHHHHHHhcCCc-------hHHHHHHHHH
Q 006343 518 LAKLAAQHLMELEPDSATPY-VVLSDLYSVIGKK-------RDGNRVRMKK 560 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~~ 560 (649)
+|...+.++.+...-+...| ...+-+|...|+. ++|.++.+..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 88888888887655433333 4555666667777 5555544433
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.18 E-value=11 Score=38.16 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHh-cCCCCChhH
Q 006343 395 RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVP---NQITFLSVLSACNHVGLVEEGFIYFKSMKTL-YNIEPGPEH 470 (649)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 470 (649)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|+..++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777788888888888888888777643211 2223333344455567777777777766651 111101111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--C-C--CCChhHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCCchHHH
Q 006343 471 YACMVDILGRAGSLAEAIDLINSM--T-F--EPPPGVWGALLGAGRTH------LNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~--~-~--~~~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
...+...+.. ..+....- . . ..-..++..+..-+... ++.+.+...++.+.++.|+...++..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111110000 00000000 0 0 00012233333333333 78899999999999999988888888
Q ss_pred HHHHHHh
Q 006343 540 LSDLYSV 546 (649)
Q Consensus 540 l~~~~~~ 546 (649)
++..+..
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 8777654
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=2 Score=41.41 Aligned_cols=151 Identities=12% Similarity=0.031 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHhhccCcHHHH
Q 006343 379 CGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVL----SACNHVGLVEEG 451 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a 451 (649)
.|+.-+|-..++++. +.|..+|+---.+|...|+...-...+++..-. ..||...|..+- -++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455666666666555 356667776667777777777777777766653 244443332221 233456777777
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------hhHHHHHHHHHHhcCChhHHHHHH
Q 006343 452 FIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMTFEPP-------PGVWGALLGAGRTHLNLDLAKLAA 523 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 523 (649)
.+.-++..+ +.| |.-.-.+....+--.|++.|+.++..+-...-+ -.-|. ..-.+...+.++.|+.+|
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHHH
Confidence 766555543 444 233444556666667777777777765441110 00111 111122346677777776
Q ss_pred HHHh--ccCCCCC
Q 006343 524 QHLM--ELEPDSA 534 (649)
Q Consensus 524 ~~~~--~~~p~~~ 534 (649)
++-+ +++.+|+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6533 2444444
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.97 E-value=3.5 Score=34.06 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=22.2
Q ss_pred HHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 006343 273 TGFSSKGNLEKSIELFNMMP---EKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKD 326 (649)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 326 (649)
+...+.|+-+.-.++...+. ++++...-.+..+|.+.|+..++-+++++..+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444432 2333344444444444444444444444444444
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.96 E-value=0.16 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.+|..+...+...|+.++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677778888888888888888888888884
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.94 E-value=7.3 Score=41.09 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCcccH
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKD-VRPNQL-----TLSSVLSASAA----TATLNQGSQIHAHVVKMNMESDVSI 368 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-----t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 368 (649)
...+++...=.|+-+.+++++.+..+.+ ++-... +|..++..+.. ....+.+.+++..+.+.-+. ....
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHH
Confidence 3444455555677777777777665532 221111 22222222222 34556667777666665433 1211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDE-------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
.---..++...|++++|.+.|+.... -....+--+.-.+...+++++|.+.|.++.+.. .-...+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 22234556667777777777775442 111223333444566677777777777777653 3334444444444
Q ss_pred h-hccCcH-------HHHHHHHHHhH
Q 006343 442 C-NHVGLV-------EEGFIYFKSMK 459 (649)
Q Consensus 442 ~-~~~g~~-------~~a~~~~~~~~ 459 (649)
| ...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 345555 66666666543
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.86 E-value=5.4 Score=33.96 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=72.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 006343 172 TILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIE 251 (649)
Q Consensus 172 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 251 (649)
..++..+...+........++.+++.+ ..+....|.++..|++.+ .......+.. ..+......++..|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 345555555566667777777776665 356667777777777653 2333444442 233444455666666666666
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcC-CChHHHHHHHhhCCCCChhhHHHHHHHHhc
Q 006343 252 EAYRLFERMPGKDFVSWTTMITGFSSK-GNLEKSIELFNMMPEKDDVTWTAIISGFVN 308 (649)
Q Consensus 252 ~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 308 (649)
++.-++.++.. +...+..+... ++++.|.+.+.+. .+...|..++..+..
T Consensus 87 ~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 87 EAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 66666666533 22223333333 6777777777663 245567777666553
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=1.1 Score=42.95 Aligned_cols=159 Identities=11% Similarity=-0.070 Sum_probs=113.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCH
Q 006343 409 QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYAC----MVDILGRAGSL 484 (649)
Q Consensus 409 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~l~~~g~~ 484 (649)
.+|+..+|...++++++. .+.|...+...-.+|...|+.+.-...++.+.. ...|+...|.- +...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998886 577888888888899999999998888888775 34666555443 44556689999
Q ss_pred HHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 485 AEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD----SATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 485 ~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
++|++.-++.. + +.|.-.-.++.......|++.++.+...+--..-.. -...|-..+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998876 3 334445566777778899999999887765442211 23446667777888899999999654
Q ss_pred HHhhCCCccCCc
Q 006343 559 KKKLKRIRKSPG 570 (649)
Q Consensus 559 ~~~~~~~~~~~g 570 (649)
.---..+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 332223455554
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.73 E-value=0.79 Score=42.91 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-----------
Q 006343 121 AREIFDKMP--EKNVVAWTAMVDGYMK-----VDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFF----------- 182 (649)
Q Consensus 121 A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 182 (649)
.++.|...+ ++|-.+|-+++..+.. .+..+=....++.|.+.|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 5677777777776643 3556666777888999999999999999998765432
Q ss_pred -----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006343 183 -----RYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGF 218 (649)
Q Consensus 183 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~ 218 (649)
.-+-+..++++|...|+-||-.+--.|++++.+.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223467788888888888888888888888877665
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.29 E-value=2.6 Score=43.13 Aligned_cols=68 Identities=16% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 006343 504 GALLGAGRTHLNLDLAKLAAQHLMELEPD--SATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGC 571 (649)
Q Consensus 504 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~ 571 (649)
..|...+++.|+.++|++.++.+++..|. +-....+|+..+...+++.++..+...-.+....|....
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 44556666777777777777777765553 344566677777777777777775555554444444433
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.11 E-value=7.4 Score=38.12 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHHHhC-----CCCccc
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLR-KDVRPNQ---LTLSSVLSASAATATLNQGSQIHAHVVKMN-----MESDVS 367 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ 367 (649)
.+|..+..++-+.-++.+++.+-..-.. .|..|.. ....++-.+....+.++++.+.|+.+.+.. ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3556666666666666666665544433 1223311 122234444555555666655555443321 112334
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 006343 368 IQNSLVSLYSKCGNVVDAYRI 388 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~ 388 (649)
++-+|...|.+..|+++|.-+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhh
Confidence 555666666666666555433
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.10 E-value=9 Score=34.75 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMV 475 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (649)
-+..||-+.--+...|+++.|.+.|+...+.... ...++..-.-++...|++.-|.+-|...-+ -.|+-..-+..+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 3456777777777888888888888887775322 223333333345567888887765554433 334322111122
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHH-hcCChhHHHHHHHHHhccCCCC-------CchHHHHHHHHHhc
Q 006343 476 DILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGR-THLNLDLAKLAAQHLMELEPDS-------ATPYVVLSDLYSVI 547 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 547 (649)
-+--+.-++.+|..-+.+--...|..-|+.-+-.+. .+=..+ .+++++.+-..++ +.+|.-|+.-|...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 222234456666654433222455666766554433 221111 2233333322222 45788899999999
Q ss_pred CCchHHHHHHHHHhh
Q 006343 548 GKKRDGNRVRMKKKL 562 (649)
Q Consensus 548 g~~~~a~~~~~~~~~ 562 (649)
|..++|..++|..-.
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998876543
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.05 E-value=3.7 Score=34.73 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPN---QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR 480 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~ 480 (649)
.....+.|++++|.+.|+.+... .+.. ...-..++.++...|++++|...+++.++.+--.|+ ..|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445666777777777766654 1211 234455666666777777777777766663222222 233333333332
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 481 AGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
-...+. .+..+. ..=+..+....|...+++++..-|++.
T Consensus 95 ~~~~~~---~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 222111 111111 111122336688888999999999654
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.94 E-value=0.36 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
.+..+...|.+.|++++|.++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455556666666666666665544
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.76 E-value=6.6 Score=32.50 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=71.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEA 487 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A 487 (649)
.-.|..++..++..+..... +..-++-++--...+-+-+-..+.++++-+.+.+.| +|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHH
Confidence 34566677777777666532 223333333222222233334444444444333322 2333333
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 006343 488 IDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIR 566 (649)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (649)
...+-.+- .+.......+.+...+|.-++-.+++..+.+.+..+|..++.++++|.+.|...++-++++..=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33222221 233344455667778888888888888888544447888899999999999999998877777677764
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.63 E-value=0.28 Score=30.39 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
|..|...|...|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.52 E-value=0.48 Score=45.47 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=55.3
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
|.++|.+++|+..+..... +.| ++..+..-..+|.+..++..|+.=.+... . ..-...|.--+.+-...|+.++
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556666666666655543 345 56666666666666666666665444432 1 0012233333444446788899
Q ss_pred HHHHHHHHhccCCCCCc
Q 006343 519 AKLAAQHLMELEPDSAT 535 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~ 535 (649)
|.+-++.+++++|++..
T Consensus 184 AKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhHHHHHhhCcccHH
Confidence 99999999999997544
No 287
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.42 E-value=12 Score=35.03 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHh-----CCCCcccHH
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRK---DV--RPNQLTLSSVLSASAATATLNQGSQIHAHVVKM-----NMESDVSIQ 369 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 369 (649)
-.+|..+.+.|++++.+..|.+++.- .+ .-+..+.++++.-.+...+.+....+++...+. +-..--.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34555666666666666666665421 11 123445666666666566666655655532221 111112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------C-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNIDE--------R-------NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQIT 434 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 434 (649)
+-|...|...|++..-.++++++.. . -...|..-|..|..+.+-..--.++++.+...-......
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4567777777888777777776641 1 123677778888888887777778887665322223344
Q ss_pred HHHHHHHhh-----ccCcHHHHHHHHHHhHHhcCCCCChhH-----HHHHHHHHHhcCC----HHHHHHHHHhCC--CCC
Q 006343 435 FLSVLSACN-----HVGLVEEGFIYFKSMKTLYNIEPGPEH-----YACMVDILGRAGS----LAEAIDLINSMT--FEP 498 (649)
Q Consensus 435 ~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~l~~~l~~~g~----~~~A~~~~~~~~--~~~ 498 (649)
...+++-|. +.|.+++|..-|-.+.+.|.-.-++.- |..|..++.+.|- -.|| -| ..|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCCH
Confidence 556677774 468888887655444443433333322 4445666666551 1121 12 345
Q ss_pred ChhHHHHHHHHHHhc
Q 006343 499 PPGVWGALLGAGRTH 513 (649)
Q Consensus 499 ~~~~~~~ll~~~~~~ 513 (649)
.......|+.+|...
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566778888888643
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.32 E-value=7.2 Score=33.16 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=54.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHh-cCChhHH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFEP-PPGVWGALLGAGRT-HLNLDLA 519 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~ll~~~~~-~g~~~~a 519 (649)
...++.+++..+++.|.- +.|+ .+.-.+-+-++.+.|++++|..++++....+ ....-..|+..|.. .||. .=
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh-HH
Confidence 347888888888888875 6675 5555566777889999999999999987433 33444556666654 3442 22
Q ss_pred HHHHHHHhccCC
Q 006343 520 KLAAQHLMELEP 531 (649)
Q Consensus 520 ~~~~~~~~~~~p 531 (649)
...+..+++-.+
T Consensus 97 r~~A~~~le~~~ 108 (153)
T TIGR02561 97 HVHADEVLARDA 108 (153)
T ss_pred HHHHHHHHHhCC
Confidence 334444444433
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.94 E-value=1.2 Score=38.30 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHhCC-CCCChhHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 480 RAGSLAEAIDLINSMT-FEPPPGVWGAL-LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
+.++.+++..++..+. ..|.......+ ...+...|++..|+++++.+.+-.|..+..--+++.++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 4455555555555544 34443322222 222334555555555555555555544444444444444443
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.93 E-value=9.1 Score=33.55 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 006343 154 DLFLSMRRGGMAFNSITLTILFEACGRFFRYRE 186 (649)
Q Consensus 154 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 186 (649)
+.++.+.+.+++|+...+..++..+.+.|....
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344455556666666666666666666665443
No 291
>PRK10941 hypothetical protein; Provisional
Probab=90.49 E-value=2.1 Score=41.06 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhhCCCccCCceeEEEECCEE
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKLKRIRKSPGCSWIILKDKV 580 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~g~s~i~~~~~~ 580 (649)
..++|-.++...++++.|.++.+.++.+.|+++.-+--.+-+|++.|.+..|.. +..-+... |
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P----------- 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P----------- 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C-----------
Confidence 346677788899999999999999999999999999999999999999999999 55544432 2
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHhh
Q 006343 581 HLFLAGRKSCLDLKEIEVTLQTISKGT 607 (649)
Q Consensus 581 ~~f~~~d~~hp~~~~i~~~l~~l~~~~ 607 (649)
..|.++.|...++.|..+.
T Consensus 247 --------~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 247 --------EDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred --------CchhHHHHHHHHHHHhhcC
Confidence 1477888888888777654
No 292
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.38 E-value=0.47 Score=40.79 Aligned_cols=128 Identities=12% Similarity=0.144 Sum_probs=71.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 006343 174 LFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEA 253 (649)
Q Consensus 174 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 253 (649)
++..+.+.+.+.....+++.+.+.+...+..+.+.|+..|++.+..+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666676666556677888888888888777777777764332 3345566677777777777
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCC
Q 006343 254 YRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQ 311 (649)
Q Consensus 254 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (649)
.-++.++...+... ..+.+.++++.|.+.+.+. .+...|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 66655442111000 0011222222332222222 246678888888776654
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.01 E-value=14 Score=33.10 Aligned_cols=113 Identities=9% Similarity=0.013 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHHhcCCHHHH
Q 006343 415 EALNLFRKMKDEGLVPNQITFLS--VLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYAC-----MVDILGRAGSLAEA 487 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~l~~~g~~~~A 487 (649)
+......++....-+....++.. +..++...|++++|...++.... .|.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566665432222222222 33456788999999988887664 243333333 45667889999999
Q ss_pred HHHHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 488 IDLINSMTFEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 488 ~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
+..++... .++ +..-..-+..+...|+-++|+..|+++++.+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998765 222 222233345678999999999999999998763
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.95 E-value=1.6 Score=36.91 Aligned_cols=52 Identities=13% Similarity=-0.004 Sum_probs=32.8
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
..++++.++.++..+.-+.|+.+..-..-++++...|+|+||.++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666666666666666666666666666666666655554443
No 295
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.67 E-value=46 Score=38.64 Aligned_cols=255 Identities=13% Similarity=0.067 Sum_probs=103.1
Q ss_pred HHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006343 255 RLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTL 334 (649)
Q Consensus 255 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (649)
.+...+..+|+.+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..++. .+|...-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHH
Confidence 3334444566666666666666655544333344444444443333333333333221111122222332 1344444
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 006343 335 SSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGE 414 (649)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (649)
...+.++...+..+ ...+.. .. -.+|+.+-...+.++.+.+..+. +......++...-...+.++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 44444444332111 111111 11 12344444444444444433221 222233444444444455555544332
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 415 E-ALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINS 493 (649)
Q Consensus 415 ~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 493 (649)
. +...+..+.. .+|...-...+.++...|..+.....+..+.+ .++...-...+.++++.+. .++...+..
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 1 2333333332 23444445555555555554433333333332 2344444445555555543 234444444
Q ss_pred CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 494 MTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 494 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+...|+..+-...+.++...+....+...+.++++
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 33345544444444444433222334444444443
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.42 E-value=0.61 Score=44.81 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHh-CCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 006343 475 VDILGRAGSLAEAIDLINS-MTFEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~-~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (649)
+.-|.++|+++||.+.+.. |...| +++.+..-..+|.+...+..|+.-++.++.++-....+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999986 44666 888898999999999999999999999999998788888887777777888877
Q ss_pred HHH
Q 006343 553 GNR 555 (649)
Q Consensus 553 a~~ 555 (649)
|.+
T Consensus 184 AKk 186 (536)
T KOG4648|consen 184 AKK 186 (536)
T ss_pred HHH
Confidence 766
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.18 E-value=0.82 Score=28.22 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=20.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEML 323 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (649)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.79 E-value=14 Score=36.13 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 006343 414 EEALNLFRKMKDEGLVPNQI--TFLSVLSACNHVGL--VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR 480 (649)
Q Consensus 414 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~ 480 (649)
+.+...|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+ .++++...+|..++-+-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHHhc
Confidence 56677888888878776543 34444444433222 4577888888887 4899988888777654433
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.73 E-value=5.1 Score=35.75 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
..-.-++.+.+.++.|.+-..+.. +.|. .....--.-+|.....++.|+.-|+++++.+|....+--...
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 333444555666666665554433 2232 112222233556667788899999999999996554444333
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.72 E-value=3.2 Score=39.71 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKD-----EGLVPNQITFLS 437 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 437 (649)
..++..++..+..+|+.+.+...++++. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456678888888888888888888776 34667888888888888888888888888765 466666555444
Q ss_pred HHH
Q 006343 438 VLS 440 (649)
Q Consensus 438 ll~ 440 (649)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.71 E-value=42 Score=36.98 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 006343 410 NGLGEEALNLFRKMKDE-GLVPNQI--TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAE 486 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~ 486 (649)
..+.+.|..++...... ++.+... ....+.......+..+++...++.... -..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 44568888888876443 2333322 222232222232225566666665433 11244444445555558888888
Q ss_pred HHHHHHhCCC-CCChhHH-HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 487 AIDLINSMTF-EPPPGVW-GALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 487 A~~~~~~~~~-~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
+...|..|+. ..+..-| -=+..+....|+.+.|...++++.. + .+.|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 8888888872 1122222 3355565668899999888888743 2 23555554
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.15 E-value=11 Score=33.58 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDERN------IVSYNSMISGFAQNGLGEEALNLFRKM 423 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 423 (649)
+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......|++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555555444211 123334444444444444444444443
No 303
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.70 E-value=11 Score=29.43 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=36.6
Q ss_pred HHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006343 274 GFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTL 334 (649)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (649)
.+...|++++|..+.+.+.-||...|.+|-.. +.|..+++..-+.+|..+| .|...+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45566777777777777777777777665443 4566666666666676665 4444444
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.43 E-value=5.9 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH----hcCCCCChhHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT----LYNIEPGPEHYAC 473 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 473 (649)
.++..++..+...|+++.+...++++.... +-|...|..++.+|...|....|+..|+.+.+ +.|+.|.++....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 466778888889999999999999998874 66788899999999999999999998888765 4677777666554
Q ss_pred HHHH
Q 006343 474 MVDI 477 (649)
Q Consensus 474 l~~~ 477 (649)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.41 E-value=1.1 Score=30.68 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.+.-++.+.|+++.|.+..+.+++++|++..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566788999999999999999999997655433
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.90 E-value=21 Score=31.37 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh
Q 006343 189 QVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVS 236 (649)
Q Consensus 189 ~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~ 236 (649)
+....+.+.++.++..++..+++.+.+.|.+..-..++.--.-+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~ 62 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKP 62 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHH
Confidence 455566678899999999999999999999888877776554444433
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.83 E-value=0.67 Score=28.22 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=15.2
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHH
Q 006343 465 EPG-PEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 465 ~p~-~~~~~~l~~~l~~~g~~~~A~ 488 (649)
.|+ ...|..+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 453 666666666666666666664
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.71 E-value=10 Score=33.85 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=40.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL--TLSSVLSASAATATLNQGSQIHAHVVK 359 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (649)
.+..+...|.+.|+.+.|++.|.++.+....|... .+..++..+...+++..+......+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56677777778888888888888777754444332 445566666666666666666554443
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.53 E-value=6.5 Score=34.64 Aligned_cols=87 Identities=14% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 448 VEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
+++|+.-|+.... +.|+ ...+.|+..+|...+.+. ||.. .....+++|...|+++
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~------------~d~~---------~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLT------------PDTA---------EAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhc------------CChH---------HHHHHHHHHHHHHHHH
Confidence 4445555555554 6777 577778887776554221 2211 0112256788889999
Q ss_pred hccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 006343 527 MELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (649)
...+|++..+...| .+. +.|-++-..+...+.
T Consensus 107 v~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 107 VDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 99999655444443 332 235555555544443
No 310
>PRK12798 chemotaxis protein; Reviewed
Probab=86.07 E-value=42 Score=34.07 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhccCcHHHH
Q 006343 379 CGNVVDAYRIFTNIDE----RNIVSYNSMISGF-AQNGLGEEALNLFRKMKDE--GLVPNQITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a 451 (649)
.|+-++|.+.+..+.. +....+-.|+.+- ....++.+|+++|+...-. |--........-+..+...|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5899999999988873 3445666666554 4567899999999987653 2112234455556667889999999
Q ss_pred HHHHHHhHHhcCCCCChhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006343 452 FIYFKSMKTLYNIEPGPEHY-ACMVDILGRAG---SLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLM 527 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~-~~l~~~l~~~g---~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 527 (649)
..+-....+.|...|=...| ..++..+.+.+ ..+.-..++..|.-+--..+|..+...-...|+.+.|..+.++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 88877777766666643333 22333444333 344444555566522224578888888889999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhc
Q 006343 528 ELEPDSATPYVVLSDLYSVI 547 (649)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~ 547 (649)
.+.+ ....-...+++|...
T Consensus 285 ~L~~-~~~~~~~ra~LY~aa 303 (421)
T PRK12798 285 KLAD-PDSADAARARLYRGA 303 (421)
T ss_pred Hhcc-CCCcchHHHHHHHHH
Confidence 9875 455555566666543
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.03 E-value=1.4 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666677777777777777776663
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.78 E-value=1.7 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (649)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3677888888888888888888888877
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.77 E-value=24 Score=30.96 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH-----HHHHHh
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACM-----VDILGR 480 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~l~~ 480 (649)
+++.+..++|+.-|..+.+.|...=.+ ............|+...|...|+.+-.+ .|.+....-+ .-++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 466788899999999998877543222 1222333457889999999999998874 3333332222 335678
Q ss_pred cCCHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 481 AGSLAEAIDLINSMTFEPP---PGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
.|.+++.....+.+..+.+ ...-.+|.-+-.+.|++..|...|+.+.+
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999998888887763333 33456777788899999999999999887
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.11 E-value=1.7 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+++.|...+...|++++|+..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555554444
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=33 Score=31.75 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHH---HHHHHhcCCHHHHHHHHHhCC---CCCChhHHHH---HH--HHHHhc
Q 006343 446 GLVEEGFIYFKSMKTLYNIEPG-PEHYACM---VDILGRAGSLAEAIDLINSMT---FEPPPGVWGA---LL--GAGRTH 513 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l---~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~~---ll--~~~~~~ 513 (649)
.++++|+.+++..-.-|..+-. ...--|+ .+.-+..|++.+|.++|++.. ...+..-|.. ++ +.|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 3455555555555443332222 2222333 344456788899999988754 2233333322 22 345544
Q ss_pred -CChhHHHHHHHHHhccCCCCCch
Q 006343 514 -LNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 514 -g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.|.-.+.+++++-.+++|.-+.+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 78888899999999999965444
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.50 E-value=10 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 412 LGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
+.-++.+-++.+....+-|+.....+.|.||.+.+++.-|+++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777778899999999999999999999999999998886433 34556666554
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.34 E-value=1.7 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.064 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666777777777777766664
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.24 E-value=13 Score=39.20 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=45.9
Q ss_pred hCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 006343 114 KKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGL 193 (649)
Q Consensus 114 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 193 (649)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+.+. |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555554443322 2333455555555555555555555544433 23333344444444444444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 194 VSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMM 229 (649)
Q Consensus 194 ~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 229 (649)
..+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 4444421 12223355566666666666554
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.84 E-value=34 Score=31.28 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMV 475 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 475 (649)
.+..++.+.+.+...+++...+.-++.. +.|..+-..++..++-.|++++|..-++-... +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 4455677888889999999888877762 44455566677788889999999887776654 4554 45555555
Q ss_pred HHHHhcCCHHHHH-HHHHh--CC-C-CCChhHHHH-HHHHHH--hcCChhHHHHHHHHHhccCCCCCc
Q 006343 476 DILGRAGSLAEAI-DLINS--MT-F-EPPPGVWGA-LLGAGR--THLNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 476 ~~l~~~g~~~~A~-~~~~~--~~-~-~~~~~~~~~-ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
+.- .+. ++|.. -| + -.+...|.. |+.+.. ..|.-+.....-+.+++-.|...+
T Consensus 80 r~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 432 122 23432 22 1 113445644 444433 334556666777788887775443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.74 E-value=65 Score=33.55 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
....-+++..+.++-...-...+..+|+.-| -+...|..++.+|... ..+.-..+|+++++..+. |+.....|++.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3345566777777777777777788887743 4566777778777776 556677788888887766 66666777777
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhcc
Q 006343 376 YSKCGNVVDAYRIFTNIDE------RNI---VSYNSMISGFAQNGLGEEALNLFRKMKD-EGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~ 445 (649)
|.+ ++.+.+...|.+... .+. ..|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 777 777778777776541 111 1455554321 2345555555555544 33333344555555566667
Q ss_pred CcHHHHHHHHHHhHH
Q 006343 446 GLVEEGFIYFKSMKT 460 (649)
Q Consensus 446 g~~~~a~~~~~~~~~ 460 (649)
.++++|++++..+.+
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 777777777766665
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.37 E-value=13 Score=35.81 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006343 361 NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-R--------NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN 431 (649)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 431 (649)
|......+...++..-....+++++...+-++.. + ...+|-.++ ..-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 3444455555666666667788888888777663 2 222333332 23367899999999999999999
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
..|+..++..+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999998887766654
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.33 E-value=11 Score=29.70 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 415 EALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
+..+-++.+....+-|+.....+.|.||.+.+++.-|+++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4555566666677889999999999999999999999999999988644 444477776643
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=32 Score=31.83 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=15.0
Q ss_pred hcCChhHHHHHHHHHhccCCCC
Q 006343 512 THLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
..+++.+|+.+++++....-++
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 5677778888888777644433
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.56 E-value=18 Score=38.07 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCC
Q 006343 216 LGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKD 295 (649)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 295 (649)
.|+++.|..++..++++ .-+.++.-+-..|..++|+++-- |+.. -.....+.|+++.|.++..+. .+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~--~s 665 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEA--NS 665 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhh--cc
Confidence 46677776666666532 33455566667777777766522 2211 122345667777777765433 35
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-.-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 56788888888888888888888877654 334555555566555444444444444432 222334
Q ss_pred HHhcCCHHHHHHHHHh
Q 006343 376 YSKCGNVVDAYRIFTN 391 (649)
Q Consensus 376 ~~~~g~~~~A~~~~~~ 391 (649)
|...|+++++.+++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 5556666666666544
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.51 E-value=45 Score=32.69 Aligned_cols=125 Identities=10% Similarity=0.171 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c----CChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHHhcCCH-
Q 006343 313 EEAFRWFIEMLRKDVRPNQLTLSSVLSASAA--T----ATLNQGSQIHAHVVKMNME---SDVSIQNSLVSLYSKCGNV- 382 (649)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~- 382 (649)
++.+.+++.|.+.|++-+..++.+.+..... . .....+..+|+.|.+..+- ++-..+.+++.+ ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677888888888877777664444333 1 1345678888888886542 233344444332 33333
Q ss_pred ---HHHHHHHHhcC-----CCChHHHHHHHHHHHhc-CC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006343 383 ---VDAYRIFTNID-----ERNIVSYNSMISGFAQN-GL--GEEALNLFRKMKDEGLVPNQITFLSVL 439 (649)
Q Consensus 383 ---~~A~~~~~~~~-----~~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll 439 (649)
+.+..+|+.+. +.|..-+.+-|-++... .. ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34445555544 23443333333333321 11 458899999999999998877655443
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.41 E-value=9.7 Score=29.58 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCChhhHHHHH
Q 006343 149 FEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVS-RFGFDYDIILGNSII 210 (649)
Q Consensus 149 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~ 210 (649)
.-++.+-++.+....+.|+.....+.|+||.+.+++..|.++++-++ +.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33566667777777888999999999999999999999999998776 3332 333454443
No 327
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.36 E-value=1.1 Score=43.27 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 481 AGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 481 ~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
.|.+++|.+.+.... .. |....+..-.+++...+....|++-+..+++++|+.+.-|-.-..+....|.|++|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 456777777666543 33 3344555556667777788888888888888888888888888888888888888888555
Q ss_pred HHhhCCCc
Q 006343 559 KKKLKRIR 566 (649)
Q Consensus 559 ~~~~~~~~ 566 (649)
..-+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 55445554
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.36 E-value=40 Score=29.61 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=48.7
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC--hHHH---HHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 375 LYSKCGNVVDAYRIFTNIDERN--IVSY---NSM--ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
.....|+-..|...|+++...+ +... -.| .-.+..+|-++......+.+-..+-+--...-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 3455677777777777665211 1111 111 12344577777777666665544422233333445556667788
Q ss_pred HHHHHHHHHHhHHh
Q 006343 448 VEEGFIYFKSMKTL 461 (649)
Q Consensus 448 ~~~a~~~~~~~~~~ 461 (649)
+..|.+.|..+..+
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 88888888777764
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.35 E-value=2.7 Score=35.99 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006343 138 AMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG 217 (649)
Q Consensus 138 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g 217 (649)
.+|..+.+.+.++....+++.+...+...+....+.++..+++.++.+....++. . .+..-...+++.+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcc
Confidence 3455566666677777777777665555556666667777776665555555444 1 11122233455555555
Q ss_pred CHHHHHHHHhhC
Q 006343 218 FMDEANKVFSMM 229 (649)
Q Consensus 218 ~~~~A~~~~~~~ 229 (649)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555554443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.14 E-value=1.2e+02 Score=35.12 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 006343 135 AWTAMVDGYMKVD--CFEDGFDLFLSMRR 161 (649)
Q Consensus 135 ~~~~li~~~~~~g--~~~~A~~~~~~m~~ 161 (649)
-.-.+|.+|++.+ ..++|+....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3446778888877 66777777766664
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.02 E-value=12 Score=38.08 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=60.7
Q ss_pred cCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 006343 410 NGLGEEAL-NLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 410 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~ 488 (649)
.|+...|- +++.-+....-.|+.+.+.+.+ ..+.|.++.+.+.+....+ -+.....+..|++.-+...|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34444333 3333333332334444443333 4566666666666555444 23344555666666666666666666
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 489 DLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 489 ~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.+-..|. .-.++.+...........|-++++.-.+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666554 1112222233333344556666666666666666553
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.94 E-value=4 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (649)
.|..+...+.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777788888888888888888776
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.73 E-value=82 Score=32.78 Aligned_cols=455 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCC-hHHHHHHHHhcc---cCC
Q 006343 27 FEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGR-CEEAARIFEAMV---EKD 101 (649)
Q Consensus 27 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~---~~~ 101 (649)
+..+.+.+. |+..|..-+.-+.+.+.+.+.-.+|.+|... +.++..|-....-....+. ++.|+.+|-..+ ..+
T Consensus 95 r~at~rf~~-D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 95 RRATNRFNG-DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRF 181 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 181 (649)
+..|-...++=..--.--.+++..-.....+. .-=...|........-..=...|..+... ....-..
T Consensus 174 p~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~eie~ge~~~~~~~~s~~~~~~~~k~~e-----~~~~~~~ 241 (568)
T KOG2396|consen 174 PKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEEIERGELAWINYANSVDIIKGAVKSVE-----LSVAEKF 241 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHHHHHHhhccchhhhhcchhhcc-----hHHHHHH
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 182 FRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMP 261 (649)
Q Consensus 182 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 261 (649)
....+..+-.-.....+.+.++.++- +.|.+.++-...-+......+-.++----+.+....+|++..
T Consensus 242 d~~kel~k~i~d~~~~~~~~np~~~~------------~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v 309 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSKAPDNPLLWD------------DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAV 309 (568)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccHH------------HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHH
Q ss_pred C--CChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006343 262 G--KDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLS 339 (649)
Q Consensus 262 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 339 (649)
. +....|+..|..|...-.......+ ..-+.+|+.....+ .....-+.....
T Consensus 310 ~~l~t~sm~e~YI~~~lE~~~~~r~~~I-------------------------~h~~~~~~~~~~~~-~l~~~~~~~ys~ 363 (568)
T KOG2396|consen 310 KTLPTESMWECYITFCLERFTFLRGKRI-------------------------LHTMCVFRKAHELK-LLSECLYKQYSV 363 (568)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhHH-------------------------HHHHHHHHHHHHhc-ccccchHHHHHH
Q ss_pred HHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCCHH
Q 006343 340 ASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-----ERNIVSYNSMISGFAQNGLGE 414 (649)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~ 414 (649)
..........+...-..+...++..+...|..-+........ ++.-+|.... .+-...+.....+.-+..-..
T Consensus 364 ~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~ 441 (568)
T KOG2396|consen 364 LLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQE 441 (568)
T ss_pred HHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhH
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH---HHhcCCHHHHHHH
Q 006343 415 EALNLFRKMKDEGLVPNQITFLS-VLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI---LGRAGSLAEAIDL 490 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---l~~~g~~~~A~~~ 490 (649)
..+.++-.....-..|+..|+.+ ++.-+...|-+.+|+..+..+.. --+|+...|..||.. ...+| +.-+.++
T Consensus 442 ~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~ 518 (568)
T KOG2396|consen 442 DTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREY 518 (568)
T ss_pred HHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHH
Q ss_pred HHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCchH
Q 006343 491 INSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME-LEPDSATPY 537 (649)
Q Consensus 491 ~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~ 537 (649)
++.|. +..|+..|...+.--..+|..+.+-.++.++++ ++|....++
T Consensus 519 yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 519 YDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESAEAF 568 (568)
T ss_pred HHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhhhcC
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.66 E-value=2.7 Score=23.60 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHH
Q 006343 535 TPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
.+...|+.++...|++++|..+.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677888888888888888754
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.32 E-value=11 Score=34.01 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=45.6
Q ss_pred hcCCHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchHH
Q 006343 480 RAGSLAEAIDLINSMTFEP--PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD----SATPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a 553 (649)
|.|+ ++|...|-.+...| +....-..+..+....|.++++.++-+++++.+. |+..+..|+.+|...|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4443 34555554444222 2223333444555677888888888888884332 477788888888888888776
Q ss_pred H
Q 006343 554 N 554 (649)
Q Consensus 554 ~ 554 (649)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.10 E-value=5.5 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666777777777777777766554
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.82 E-value=38 Score=34.67 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=95.1
Q ss_pred ccCcHHHHHH-HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHH
Q 006343 444 HVGLVEEGFI-YFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAK 520 (649)
Q Consensus 444 ~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~ 520 (649)
..|+.-.|-+ +|..+.. + +.++.+...........|.++.+...+.... +.....+...++......|+.+.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-Q--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHh-C--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3466655544 4544443 3 3344454445556678899999999998765 4455667788888888999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCC
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAGR 587 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d 587 (649)
..++-++.-+-.++......+-.-...|-+|++...++.+-....+...| |+........|-.|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 99999998776666666555555566788999999777665544333333 666666666665554
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.47 E-value=54 Score=29.49 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDERNIVS--YNSMISGFAQNGLGEEALNLFRKMKDEG 427 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 427 (649)
.|.......|..++|...++....++-.+ ...-...+...|+-++|..-|.+.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 35666777888888888888777664333 3334567888889999999888888765
No 339
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.08 E-value=50 Score=30.86 Aligned_cols=107 Identities=23% Similarity=0.235 Sum_probs=61.1
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 399 SYNSMISGFA--QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 399 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
.|...+.|+. .++++++|++++-.- .+.|+... -++.++...|+.+.|..+++...- .-.+.+....+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 3445555554 366777777776321 22233221 356666667888888888765432 1112333333333
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 006343 477 ILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g 514 (649)
+ ..+|.+.||..+.+..+.+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 566888888888888763223457777777776444
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.06 E-value=8.5 Score=40.21 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=74.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPG--PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
...|+...|...+..+.. ..|- -.....|..++.+.|...+|-.++.+.. ....+.++..+++++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 346888888888776654 4553 3345567777888888888888887644 34446677888889999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
|++.++.+++++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999988887766655433
No 341
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.89 E-value=75 Score=30.83 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=11.3
Q ss_pred cCCCHHHHHHHHHHHHH
Q 006343 308 NNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 308 ~~g~~~~A~~~~~~m~~ 324 (649)
+.|+.+.|..++.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45677777777776654
No 342
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.55 E-value=1.4e+02 Score=33.63 Aligned_cols=182 Identities=17% Similarity=0.161 Sum_probs=89.0
Q ss_pred HhcCCHHHHHHHHHhcC----CCCh-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006343 377 SKCGNVVDAYRIFTNID----ERNI-------VSYNSMIS-GFAQNGLGEEALNLFRKMKDE----GLVPNQITFLSVLS 440 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 440 (649)
....++++|..+..+.. .++. ..|+.+-. .....|++++|+++.+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777666543 2221 24555533 233467778888877776653 11233344445555
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH-----HHHHHhcCCHHHHHHH--HHhC---C--CCCC----hhHHH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACM-----VDILGRAGSLAEAIDL--INSM---T--FEPP----PGVWG 504 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~l~~~g~~~~A~~~--~~~~---~--~~~~----~~~~~ 504 (649)
+..-.|++++|..+.+...+. .-.-+..++... ...+..+|....|... +... . ..|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666678888887776665542 112233333222 2335566633332222 2111 1 1111 12233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLME----LEPDSATP---YVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.++.++.+ ++.+...+...++ ..|..-.. +..|+.++...|+.++|......+..
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33333322 4555544444444 22322111 23677788888888888874444443
No 343
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.51 E-value=12 Score=36.31 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT----FEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
..+|--=+.-|.+.+++..|.+.|.+-. -.|| ++.|++-..+-...||+..++.-..+++.++|.+..+|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4455556677889999999999998754 2343 456666666666789999999999999999999999999988
Q ss_pred HHHHhcCCchHHHH
Q 006343 542 DLYSVIGKKRDGNR 555 (649)
Q Consensus 542 ~~~~~~g~~~~a~~ 555 (649)
.++....++++|..
T Consensus 161 kc~~eLe~~~~a~n 174 (390)
T KOG0551|consen 161 KCLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888665554
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.15 E-value=15 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=31.8
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 493 SMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 493 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.+..-|++.+..+.+.+|++.+|+..|.+.++-+..--.+....|-
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~ 83 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYP 83 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHH
Confidence 3446799999999999999999999999999988764332333443
No 345
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.08 E-value=1.3e+02 Score=33.24 Aligned_cols=430 Identities=7% Similarity=-0.047 Sum_probs=210.9
Q ss_pred CChHHHHHHHhhCCCCCcc---hHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhc
Q 006343 21 CSIYEAFEIFATMPMRNAV---SYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAM 97 (649)
Q Consensus 21 g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 97 (649)
|++..+..+-..+...... .|-.+..... ...+++....+.+-+..+.....=...+..+++.+++..... |..-
T Consensus 47 g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~ 124 (644)
T PRK11619 47 RQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSPE 124 (644)
T ss_pred CCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcCC
Confidence 5666666655555432222 2333322221 223444444444443322222222334455566777777666 3322
Q ss_pred ccCChhHHHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHH--HHHHHHHhCCCCCChhhHH
Q 006343 98 VEKDVVAWGSMVDGYCKKGRVIEAREIFDKMP---EKNVVAWTAMVDGYMKVDCFEDGF--DLFLSMRRGGMAFNSITLT 172 (649)
Q Consensus 98 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~g~~p~~~t~~ 172 (649)
...+.........+....|+.+.|......+- ......++.++..+.+.|...... +-+..+...|- ...-.
T Consensus 125 ~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~~lA~ 201 (644)
T PRK11619 125 KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---TGLVT 201 (644)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---HHHHH
Confidence 23455566667777778888776766555543 234567788888877666544322 22222222221 11111
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH--------cCCCCChhhHHHHHHHHH--hcCCHHHHHHHHhhCCCCC-------hh
Q 006343 173 ILFEACGRFFRYREGVQVHGLVSR--------FGFDYDIILGNSIITMYG--RLGFMDEANKVFSMMSKRD-------AV 235 (649)
Q Consensus 173 ~ll~a~~~~~~~~~a~~~~~~~~~--------~g~~~~~~~~~~l~~~y~--~~g~~~~A~~~~~~~~~~~-------~~ 235 (649)
.+..-.. .+.-..+......... ..+.++...-..++-.+. ...+.+.|...+....... ..
T Consensus 202 ~l~~~l~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 202 YLAKQLP-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred HHHHhcC-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1111110 0000011111110000 011122211121111221 2445688888888764321 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHhcCC
Q 006343 236 SWNSLISGYVHNGEIEEAYRLFERMPGK--DFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTWTAIISGFVNNE 310 (649)
Q Consensus 236 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 310 (649)
.+..+....+..+...+|...+...... +......-+....+.++++.+...+..|... ...-..-+..++...|
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g 360 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQG 360 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcC
Confidence 4555555555554356777777765432 4455555566666889999999999998752 2233445667777789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH-HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 006343 311 QYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQG-SQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIF 389 (649)
Q Consensus 311 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (649)
+.++|...|+++... . +|-.++.+- ++|..-.. ...... ....+...+ ...-+..+...|....|...+
T Consensus 361 ~~~~A~~~~~~~a~~---~---~fYG~LAa~-~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew 430 (644)
T PRK11619 361 RKAEAEEILRQLMQQ---R---GFYPMVAAQ-RLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEW 430 (644)
T ss_pred CHHHHHHHHHHHhcC---C---CcHHHHHHH-HcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHH
Confidence 999999999997431 2 233333221 12211000 000000 000001011 122345566778888888887
Q ss_pred HhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 390 TNID-ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE-----GLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 390 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
..+. ..+....-.+...-...|.++.++......... ++ |- .|...+..++..-.++.++- +--+..+.+
T Consensus 431 ~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~~v~~~lv-~ai~rqES~ 506 (644)
T PRK11619 431 ANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGKGIPQSYA-MAIARQESA 506 (644)
T ss_pred HHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHcCCCHHHH-HHHHHHhcC
Confidence 7655 334444555555555678877777666543221 11 21 35556666655555555543 334444567
Q ss_pred CCCChhH
Q 006343 464 IEPGPEH 470 (649)
Q Consensus 464 ~~p~~~~ 470 (649)
+.|+..+
T Consensus 507 f~p~a~S 513 (644)
T PRK11619 507 WNPKARS 513 (644)
T ss_pred CCCCCcc
Confidence 7777443
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.90 E-value=19 Score=32.49 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHH
Q 006343 414 EEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNI--EPGPEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 414 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~l~~~g~~~~A~ 488 (649)
+.|...|-++...+.--+ ......+..|....+.++++.++....+.+.- .+|++.+..|+.++.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666666666553333 33333334444456667777666665543222 345666666666666666666653
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.89 E-value=1.3e+02 Score=33.13 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=105.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHH-hCCChhHHHHHhccCCC---C-Ccc-----cHH
Q 006343 68 WRDSVCSNALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYC-KKGRVIEAREIFDKMPE---K-NVV-----AWT 137 (649)
Q Consensus 68 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~~~~---~-~~~-----~~~ 137 (649)
+.+...|..||+.-.++ ++.+.+-+.--+..+..+.-.+...+. ...+++.|+..+++... + +.. +-.
T Consensus 27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ 104 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF 104 (608)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34556677777665433 222222111111224456666677665 67889999988887532 2 111 223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCCChhhHHHH-HHHHhccCChHHHHHHHHHHHHcC---CCCChhhHHHH
Q 006343 138 AMVDGYMKVDCFEDGFDLFLSMRRG----GMAFNSITLTIL-FEACGRFFRYREGVQVHGLVSRFG---FDYDIILGNSI 209 (649)
Q Consensus 138 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l 209 (649)
.++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..+...+.-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 4556666666555 98888887653 222333344444 222323378998998888877653 24445555444
Q ss_pred HHHHH--hcCCHHHHHHHHhhCC-------------CCChhhHHHHHHH--HHhcCCHHHHHHHHhhCC
Q 006343 210 ITMYG--RLGFMDEANKVFSMMS-------------KRDAVSWNSLISG--YVHNGEIEEAYRLFERMP 261 (649)
Q Consensus 210 ~~~y~--~~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 261 (649)
+.+.. +.+..+++.+..+.+. .|-..+|..++.. +...|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44433 3454555555554431 1234566666654 456788777777766553
No 348
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.32 E-value=1.7e+02 Score=34.10 Aligned_cols=261 Identities=10% Similarity=0.033 Sum_probs=152.9
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCCh-HHHHHHHhhCCCCChhhHHH
Q 006343 223 NKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNL-EKSIELFNMMPEKDDVTWTA 301 (649)
Q Consensus 223 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 301 (649)
..+...+..+|...-...+..+.+.+..+-...+...+..+|..+-...+.++.+.+.. .....+...+..+|...-..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 35555566788887777788888877655444455555566666666666665544321 11222323334455555555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGN 381 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (649)
.+..+...+..+ . ..+-+++. .+|...-...+.++...+..+. +...--.++..+-...+.++...+.
T Consensus 704 A~~aL~~~~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~-------l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 704 ALDVLRALRAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES-------VAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHhhccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH-------HHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 555555433211 1 12333332 4566555666666666554322 1222234566677777777777765
Q ss_pred HHH-HHH-HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 382 VVD-AYR-IFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 382 ~~~-A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
.+. +.. +...+..+|...-.+.+.++...|....+...+..+.+ .+|...-...+.++...+. +++...+-.+.
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 443 223 33444568888888889999999887666555555554 3566666667778877775 44556555555
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHH
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVW 503 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 503 (649)
+ .|+...-...+.+|++.+....+...+..+..++|..+-
T Consensus 848 ~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 848 T----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVR 887 (897)
T ss_pred c----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHH
Confidence 4 577777777888888753344566666555545565543
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.97 E-value=1.3e+02 Score=32.65 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=71.0
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 409 QNGLGEEALNLFRKMKD-------EGLVPNQITFLSVLSACNHVG-----LVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 409 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
...+.+.|+.+|+.+.. .| +......+..+|.+.. +.+.|..++...... -.|+.........
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 34455555555555544 33 2223334444444432 445566666655541 1233222222221
Q ss_pred HHHh-cCCHHHHHHHHHhCCCCCChhHHHHHHHHHH----hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCc
Q 006343 477 ILGR-AGSLAEAIDLINSMTFEPPPGVWGALLGAGR----THLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVI-GKK 550 (649)
Q Consensus 477 ~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 550 (649)
..+. ..+...|.++|......-.....-.+...+. ...+.+.|...++++-+.+ ++.+...++..+... +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccc
Confidence 1222 1345567777666542222222222222221 3346777777777777766 234344444443333 777
Q ss_pred hHHHHHHHHHhhCCCc
Q 006343 551 RDGNRVRMKKKLKRIR 566 (649)
Q Consensus 551 ~~a~~~~~~~~~~~~~ 566 (649)
+.+.-....+++.|.+
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 7776666666655544
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.59 E-value=70 Score=29.33 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=96.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH-HHHHHHH--HHHhcCCHHHHHHHH
Q 006343 344 TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIV-SYNSMIS--GFAQNGLGEEALNLF 420 (649)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~ 420 (649)
.|-...|+-=+.+.....+. -+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++---|++.-|.+-|
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444444333 4567888888888899999999999988765543 2333322 233468888888877
Q ss_pred HHHHHcCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC--
Q 006343 421 RKMKDEGLV-PNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYA-CMVDILGRAGSLAEAIDLINSMTF-- 496 (649)
Q Consensus 421 ~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~l~~~g~~~~A~~~~~~~~~-- 496 (649)
.+.-+.... |=...|.-+. ...-++.+|..-+.+--+ ..+.+-|. .+|..|.-.=..+.+.+-+..-..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 776665321 1112222222 233456666654332221 23333333 234444322222333332222211
Q ss_pred ----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 497 ----EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 497 ----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
+.-..++--|..-+...|+.++|...++-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0112345556677778899999999988887643
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.48 E-value=6.2 Score=22.11 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 006343 473 CMVDILGRAGSLAEAIDLIN 492 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~ 492 (649)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555566666555543
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.17 E-value=2.5e+02 Score=35.56 Aligned_cols=305 Identities=14% Similarity=0.076 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC----CCCCh--hHHHHHHHHHHcCCChHHHHHHHhh-CCCCChhhHHHHHHHHhcCCC
Q 006343 239 SLISGYVHNGEIEEAYRLFERM----PGKDF--VSWTTMITGFSSKGNLEKSIELFNM-MPEKDDVTWTAIISGFVNNEQ 311 (649)
Q Consensus 239 ~li~~~~~~g~~~~A~~~~~~m----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 311 (649)
++..+-.+.+.+.+|+..+++- .+.+. .-+..+...|+.-++++....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667788899999999883 22222 2344455588888888887777663 33333 2334455667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHH-HHHHHHHhcCCHHHHHHHHH
Q 006343 312 YEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQN-SLVSLYSKCGNVVDAYRIFT 390 (649)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 390 (649)
+..|...|+.+.+.+ ++...+++.++......+.++......+...... .+...-++ .=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998863 3346678878877777777776666444333222 12222222 22444466777777666655
Q ss_pred hcCCCChHHHHHH-H-HHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHH----------
Q 006343 391 NIDERNIVSYNSM-I-SGFAQN--GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFK---------- 456 (649)
Q Consensus 391 ~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~---------- 456 (649)
..+..+|.+. + ..+.+. .+.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.-
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666655 2 222222 22222223333333321111 223333332222222111
Q ss_pred HhHHhcCCCCChhHHH---HHHHHHHhcCCHHHHHHHHHhCC-------CCC-----ChhHHHHHHHHHHhcCChhHHHH
Q 006343 457 SMKTLYNIEPGPEHYA---CMVDILGRAGSLAEAIDLINSMT-------FEP-----PPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 457 ~~~~~~~~~p~~~~~~---~l~~~l~~~g~~~~A~~~~~~~~-------~~~-----~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
......+..|+....+ ....-+.+.+..-.+.+-+-.+. ..| -..+|-.....+|..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1112223444322111 11112222222222333222111 122 25589999999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 522 AAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
+.-++.+.. -+..+.-.+...-..|+-..|..+.+..-
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 988888877 47888999999999999999999554443
No 353
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.09 E-value=1e+02 Score=30.94 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDER-------NIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
..++..+...+.+.|.++.|...+..+... .+...-.-+..+-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655531 223333344555566777777777766665
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.06 E-value=12 Score=35.74 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
++.....|...|.+.+|.++.++++.++|-+...+..|.++|+..|+--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445678899999999999999999999999999999999999999888877555443
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.96 E-value=19 Score=24.58 Aligned_cols=50 Identities=10% Similarity=-0.104 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhhcC
Q 006343 536 PYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKEFD 611 (649)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~ 611 (649)
.+..++..+.+.|++++|.+.-+.+-+. +|...+.....+.+..+|++.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 3567888899999999999955444331 4666676666667777777765
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.96 E-value=4.6 Score=31.30 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCCc
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS--ATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 550 (649)
......+...+...|+++.|...+-.++..+|+. ..+-..|..++...|.-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3444455555555666666666555555554432 44445555555555553
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.59 E-value=95 Score=34.17 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHcC
Q 006343 238 NSLISGYVHNGEIEEAYRLFERMP---GKDFVSWTTMITGFSSK 278 (649)
Q Consensus 238 ~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 278 (649)
-.+|--|.+.|++++|.++..+.. ......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 356777788888888888883332 23334555566666553
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.55 E-value=42 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLS 437 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 437 (649)
+..+...|++++|..+.+.+.-||...|-++.. .+.|..+++..-+-+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 344566788888888888888888888877754 45667777777777777776 566555544
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.99 E-value=11 Score=34.20 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 006343 471 YACMVDILGRAGSLAEAIDLINS-MTFEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~-~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
....+..+.+.+.+++|+...+. ...+| |...-..|+..+...|++++|..-++-+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456677888999999887765 33444 4556677888899999999999999999999996544
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.42 E-value=60 Score=31.27 Aligned_cols=72 Identities=6% Similarity=0.089 Sum_probs=47.1
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 006343 453 IYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT----FEPPPGVWGALLGAGRTHLNLDLAKLAAQ 524 (649)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 524 (649)
++.+-+...++-.++..+..++++.+++.+++.+-.++++... ...|...|..++..-..+||......+..
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3334444555666777777777778888888887777776543 23456677777777777777665544433
No 361
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.87 E-value=9.2 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (649)
+|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777888888888888888888776
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.05 E-value=14 Score=34.15 Aligned_cols=63 Identities=19% Similarity=0.019 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhcCChh-------HHHHHHHHHhccCC--C----CCchHHHHHHHHHhcCCchHHHHHHH-HHhhC
Q 006343 501 GVWGALLGAGRTHLNLD-------LAKLAAQHLMELEP--D----SATPYVVLSDLYSVIGKKRDGNRVRM-KKKLK 563 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~ 563 (649)
.++.-+...|+..|+.+ .|...++++.+.+. . ......+++.++.+.|+.++|.+... .+...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 35556667777777744 45555555554332 1 23567789999999999999999544 44433
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.58 E-value=1.3e+02 Score=30.58 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=51.6
Q ss_pred HHhhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------hhHHHHHHH
Q 006343 440 SACNHVGLVEEGFIYFKSMKTLYNIEPG--PEHYACMVDILG-RAGSLAEAIDLINSMTF--EPP------PGVWGALLG 508 (649)
Q Consensus 440 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~l~-~~g~~~~A~~~~~~~~~--~~~------~~~~~~ll~ 508 (649)
..+.+.|-+.-|.++.+-+.. +.|+ +-.-..+||.|+ |+++++--.++++.... ..+ ...+..-+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 356677777777777776665 5554 444444566654 67777766777665432 111 123333333
Q ss_pred HHHhcCCh---------------hHHHHHHHHHhccCC
Q 006343 509 AGRTHLNL---------------DLAKLAAQHLMELEP 531 (649)
Q Consensus 509 ~~~~~g~~---------------~~a~~~~~~~~~~~p 531 (649)
-+ ..++. +.|...+++++..-|
T Consensus 188 ~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HH-HhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33 33333 788888888887777
No 364
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.15 E-value=12 Score=36.07 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMPE-KNV-----VAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILF 175 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 175 (649)
..+...++..-....++++++..+-++.. |+. .+-.+.++.+. .-++++++.++..=++.|+-||.+|++.+|
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 33445555555556777888777666653 211 11122333333 346778888888888888888888888888
Q ss_pred HHHhccCChHHHHHHHHHHHHcC
Q 006343 176 EACGRFFRYREGVQVHGLVSRFG 198 (649)
Q Consensus 176 ~a~~~~~~~~~a~~~~~~~~~~g 198 (649)
..+.+.++...|.++-..++...
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888877777666554
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.49 E-value=10 Score=28.21 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=29.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDL 490 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~ 490 (649)
++...++|+..|....+...-.|+ -.++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777766664333333 44566677777777777776665
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.55 E-value=67 Score=31.30 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccCCCCCchHH
Q 006343 518 LAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.|.++..++++.+|.-|..+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 577888899999996555543
No 367
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.97 E-value=5.8 Score=43.41 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAID 489 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 489 (649)
+.++++.+.+.+...--| .++|.-+-+.|-++-|+.+.+.-.. -.++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHH
Confidence 456666665544322211 2334445667777777765543222 1235567899999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 490 LINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 490 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
.-+++ .|..+|..|+.....+||.+.|+..|++....+- |+.+|.-.|+.++-.++.+
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfek--------LsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEK--------LSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhh--------eeEEEEEeCCHHHHHHHHH
Confidence 98886 4678999999999999999999999998776544 6677777777665544433
No 368
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.92 E-value=6.2 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 536 PYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
++..++.+|...|++++|.+..+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 46789999999999999999655553
No 369
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=67.87 E-value=1.6e+02 Score=30.55 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=69.5
Q ss_pred HHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHH
Q 006343 44 MITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEARE 123 (649)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 123 (649)
-|.++...| ..+...+.......++...+.....++....+......+.+.+..++..+.......+.+.+.......
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~ 121 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW 121 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH
Confidence 366777777 456776666654334444444444444433333334455555556666677777777777777666655
Q ss_pred HhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 006343 124 IFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFR 183 (649)
Q Consensus 124 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 183 (649)
+..-+..++...-...+.++...+. .+...+....+ .+|...-...+.++...+.
T Consensus 122 L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPR 176 (410)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhcc
Confidence 5555555555444444455544331 12333333332 3344444444555544444
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=13 Score=34.29 Aligned_cols=117 Identities=11% Similarity=-0.020 Sum_probs=73.8
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHH-HHHhcCChh
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGP-EHYACMVDILGRAGSLAEAIDLINSM-TFEPPPGVWGALLG-AGRTHLNLD 517 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~~~~~~~~~ll~-~~~~~g~~~ 517 (649)
-|.....++.|+..+.+.+. +.|+. .-|+.-+..+.+..+++.+.+=-... .+.|+.+--..+++ +......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 46667788888887776665 78876 55566677777888888877655543 36777665444444 445677889
Q ss_pred HHHHHHHHHhcc---CCCCCchHHHHHHHHHhcCCchHHHH--HHHHH
Q 006343 518 LAKLAAQHLMEL---EPDSATPYVVLSDLYSVIGKKRDGNR--VRMKK 560 (649)
Q Consensus 518 ~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~ 560 (649)
.|+..+.++..+ .|-+++.=+-..-.-++..+|+.... ++...
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999988652 22222222223333455567766555 44444
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.41 E-value=50 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
-|.-+|.+.++++.+++..+.+++.+|++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 45567888999999999999999999954
No 372
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.40 E-value=64 Score=35.20 Aligned_cols=180 Identities=17% Similarity=0.320 Sum_probs=98.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHccCChhHHHHHHHHHHHh-C-CCCc
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQL----------TLSSVLSASAATATLNQGSQIHAHVVKM-N-MESD 365 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~ 365 (649)
+-..++-.|....+++..+++.+.+.. -||.. .|...+.--.+.|+-++|..+.--+++. | +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 344455556666666666666666654 23221 1222222223445555555555444432 2 2232
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHh
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQIT---FLSVLSAC 442 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 442 (649)
+||-||++ ++.|- +-+.|...+..+.|+++|++.-+ +.|+..+ +..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 45555653 22221 11234455666788888888776 4676543 33333332
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLA 522 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 522 (649)
.+ .++...++ . ..-..|-.+++|.|.+++-.++++-. ..+.+-.-.+|+.+|.++
T Consensus 334 G~--~Fens~El----q---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL----Q---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH----H---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 21 11111111 0 11123556788999999888777653 345555677899999999
Q ss_pred HHHHhccCC
Q 006343 523 AQHLMELEP 531 (649)
Q Consensus 523 ~~~~~~~~p 531 (649)
++.+++++|
T Consensus 389 ae~mfKLk~ 397 (1226)
T KOG4279|consen 389 AEMMFKLKP 397 (1226)
T ss_pred HHHHhccCC
Confidence 999999998
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.17 E-value=80 Score=32.27 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=64.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhh--ccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHh
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPNQI--TFLSVLSACN--HVGLVEEGFIYFKSMKTLYNI-EPGPEHYACMVDILGR 480 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~l~~ 480 (649)
.+..++++..|.++|+.+... ++++.. .+..+..+|. ..-+.++|.+.|+........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344678888888888888876 555554 3334444443 356778888888876652111 0112333333333332
Q ss_pred cCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHH--hcCChhHHHHHHHHHhc
Q 006343 481 AGSLAEAIDLINSMTFEPP-PGVWGALLGAGR--THLNLDLAKLAAQHLME 528 (649)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 528 (649)
...+.........-...+. ..+...+.++-+ ..|+++.|...+-+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222222222222111111 223344445555 47888888877777776
No 374
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.36 E-value=5.2 Score=40.80 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHhhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCh
Q 006343 440 SACNHVGLVEEGFIYFKSMKTLYNIEPGP-EHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNL 516 (649)
Q Consensus 440 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~ 516 (649)
......+.++.|+.++..+++ +.||- ..|..-..++.+.+.+..|+.=..++. ..|. ...|.-=+.+|...+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 334455677777777777775 56753 333334466667777766665444333 3443 33444444566677777
Q ss_pred hHHHHHHHHHhccCCCCCchH
Q 006343 517 DLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~ 537 (649)
.+|...++....+.|+++.+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHH
Confidence 777777777777777665543
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.85 E-value=1.3e+02 Score=28.75 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=49.4
Q ss_pred HHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHhccCC-----hHHHHHHHHHHHHcCC--CCChhhHHHHHH
Q 006343 143 YMKVDCFEDGFDLFLSM----RRGGMAFNSITLTILFEACGRFFR-----YREGVQVHGLVSRFGF--DYDIILGNSIIT 211 (649)
Q Consensus 143 ~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~l~~ 211 (649)
+.+.|+...|.++-.-| .+.++++|......++..+...+. ..-..+...+. +.|- .-++.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 44555554444443333 234555555554444444433321 11122223333 2222 235667777888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 006343 212 MYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEE 252 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 252 (649)
.|.+.|++.+|+.-|-.-..++...+..++..+...|...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc
Confidence 88888888888877766555544444334444444444433
No 376
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.55 E-value=1.9e+02 Score=30.36 Aligned_cols=89 Identities=9% Similarity=0.083 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
..-++++.+...-...-...+..+|. ..+-..+-.++..|..+ ..+.-..+++++.+. .-|.+.+...+..+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 33444555554444444444444444 23444555555555555 334455555555553 22333333333333334
Q ss_pred CcHHHHHHHHHHhH
Q 006343 446 GLVEEGFIYFKSMK 459 (649)
Q Consensus 446 g~~~~a~~~~~~~~ 459 (649)
++...+..+|..+.
T Consensus 145 ik~sk~a~~f~Ka~ 158 (711)
T COG1747 145 IKKSKAAEFFGKAL 158 (711)
T ss_pred hchhhHHHHHHHHH
Confidence 55555555555544
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.52 E-value=25 Score=31.12 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 006343 516 LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (649)
++.|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567788888899999999999999999988764
No 378
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.42 E-value=81 Score=26.53 Aligned_cols=90 Identities=9% Similarity=-0.106 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHhc---CChhHHHHHHHHHhc-cCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 006343 497 EPPPGVWGALLGAGRTH---LNLDLAKLAAQHLME-LEPDS-ATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGC 571 (649)
Q Consensus 497 ~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~ 571 (649)
.+...+--++..+.... .++.+++.+++.+++ -.|.. -.....|+-.+++.|+++.+.++-+.+-+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-------- 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-------- 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--------
Confidence 34444445566666543 467899999999997 55543 344567788899999999999966555442
Q ss_pred eEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhhcCC
Q 006343 572 SWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKEFDW 612 (649)
Q Consensus 572 s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~ 612 (649)
.|...+....=+.+..+|++.|+
T Consensus 101 ------------------e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 101 ------------------EPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhhcce
Confidence 23444444444566778888877
No 379
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=70 Score=29.91 Aligned_cols=50 Identities=4% Similarity=0.037 Sum_probs=32.2
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHH
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKK 560 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 560 (649)
...|++-++++....++..+|.+..+|..-+.+.+..=+-++|.. +.+.+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 356666677777777777777777777777666666555555555 44443
No 380
>PF15469 Sec5: Exocyst complex component Sec5
Probab=63.06 E-value=1.1e+02 Score=27.42 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDIL 478 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l 478 (649)
+..++..-.+......++.++++..- ....-.-|.-|...|+++.++..|..+...++-.. ....+..
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~----- 128 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK----- 128 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence 33334333444444555555555432 11222445567777888888877777666432221 1122211
Q ss_pred HhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 479 GRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
-+.++...++... ...|..|... ....+....+...+++++|..-.++..
T Consensus 129 ----v~~eve~ii~~~r----~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 129 ----VWSEVEKIIEEFR----EKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred ----HHHHHHHHHHHHH----HHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 1333333333322 1122222221 156677777888888888865554443
No 381
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.14 E-value=2.9e+02 Score=31.63 Aligned_cols=131 Identities=9% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHH
Q 006343 206 GNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSI 285 (649)
Q Consensus 206 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 285 (649)
|..|+..|...|+.++|.+++.+....+..+=... ....+..++.+.....++....-... .+.-..+.+.+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~------~~~~e~ii~YL~~l~~~~~~Li~~y~-~wvl~~~p~~gi 579 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ------LDGLEKIIEYLKKLGAENLDLILEYA-DWVLNKNPEAGI 579 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccch------hhhHHHHHHHHHHhcccchhHHHHHh-hhhhccCchhhe
Confidence 55677777777777777777766654321000000 01122233444443333221111110 111234455555
Q ss_pred HHHhhCCCCChhhH-HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006343 286 ELFNMMPEKDDVTW-TAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAA 343 (649)
Q Consensus 286 ~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 343 (649)
++|..-.+....+. ..-+-.|......+-++.+++.+....-.++..-.+.++.-|..
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 55554111000110 11223455666777788888888776555666666666665543
No 382
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.97 E-value=1.7e+02 Score=28.90 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 006343 412 LGEEALNLFRKMKDEGLVPNQITFLSVLSACNH------VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLA 485 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~ 485 (649)
-+++++.++++....+ .|........|.+|-. .-++..-..+|+.+.. +.|++.+--.-.-+++..--.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 4578888999988887 4888888888877632 3457777778877765 6777443322233344444466
Q ss_pred HHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 486 EAIDLINSMTFEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 486 ~A~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.++..++.+...|. -..|..-...+.+.|..++|...|++++++.++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 77777776653322 2244555667889999999999999999998855443
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.60 E-value=94 Score=29.04 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred hcCCHHHHHHHHHhcCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 006343 378 KCGNVVDAYRIFTNIDERNIVS--YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYF 455 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 455 (649)
..+++++|.+.+-.- .... ..-++.++..+|+.+.|+.+++.+.-..-.+ .....++.+ ...|.+.||..+-
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHH
Confidence 346666776666432 2211 1236777777888888888877653321111 222222333 4447888888776
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhH
Q 006343 456 KSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGV 502 (649)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 502 (649)
+..... -....+..++..+.....-....+.+-.+|+.+....
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 544331 1144666666666644433344445556666555443
No 384
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.45 E-value=26 Score=33.68 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 479 GRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
.+.|+.++|..+|+... ..|+ +.+..-+....-.++++-+|-++|-+++.+.|.+..++++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 46778888888877543 4444 4444444445556777888888888888888887777654
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.30 E-value=13 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHhccCCCCCchHHHHHH
Q 006343 514 LNLDLAKLAAQHLMELEPDSATPYVVLSD 542 (649)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (649)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888888888888877777766554
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.15 E-value=29 Score=26.45 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHHhcccCChhHHHHHHHHHH---hCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 006343 92 RIFEAMVEKDVVAWGSMVDGYC---KKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDG 152 (649)
Q Consensus 92 ~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 152 (649)
++++...+.+..+.+-.-..-+ ..|+.+.|+++++.++ +..-.|...++++-..|+-+-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4444444555554443333333 4466666666666666 6666666666666666554433
No 387
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.98 E-value=51 Score=28.12 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 006343 131 KNVVAWTAMVDGYMKVDC-FEDGFDLFLSMRRGGMAFNSITLTILFEACGRF 181 (649)
Q Consensus 131 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 181 (649)
.+-.+|++++.+..+..- ---+..+|.-|.+.+.+++..-|..++++|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455678888888866665 456788888898888899999999999988764
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.66 E-value=2.9e+02 Score=31.22 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHcCCChHHHHHHHhhCC----CCCh-------hhHHHHHH-HHhcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 006343 275 FSSKGNLEKSIELFNMMP----EKDD-------VTWTAIIS-GFVNNEQYEEAFRWFIEMLRKD----VRPNQLTLSSVL 338 (649)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll 338 (649)
.....++.+|..+..++. .++. ..|+.+-. .....|++++|+++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677788887776543 2221 14555433 3445788888888888776531 123334455555
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCcccHH---HHH--HHHHHhcCCHHHH--HHHHHhcC-----CC-----ChHHHH
Q 006343 339 SASAATATLNQGSQIHAHVVKMNMESDVSIQ---NSL--VSLYSKCGNVVDA--YRIFTNID-----ER-----NIVSYN 401 (649)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~~A--~~~~~~~~-----~~-----~~~~~~ 401 (649)
.+..-.|++++|..+.....+..-..+...+ ..+ ...+...|+...| ...|.... .. -.....
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 5666678888888887766655322233222 222 2234556633322 23333322 11 122344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH---H
Q 006343 402 SMISGFAQN-GLGEEALNLFRKMKDEGLVPNQITFL--SVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYAC---M 474 (649)
Q Consensus 402 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~---l 474 (649)
.+..++.+. +...++..-+.--......|-..... .+.......|+.++|...++.+..-. ..+. ..-|.+ .
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~-~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL-LNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCCCchHHHHHHH
Confidence 444444441 11222222222222222222222222 45556677899999998888887632 2222 112222 2
Q ss_pred HHH--HHhcCCHHHHHHHHHh
Q 006343 475 VDI--LGRAGSLAEAIDLINS 493 (649)
Q Consensus 475 ~~~--l~~~g~~~~A~~~~~~ 493 (649)
+.. -...|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3467888887777665
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.09 E-value=25 Score=21.74 Aligned_cols=31 Identities=16% Similarity=-0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChhHHHHH--HHHHhccCCC
Q 006343 502 VWGALLGAGRTHLNLDLAKLA--AQHLMELEPD 532 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 532 (649)
.|-.+...+...|+.++|+.. ++-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345566667778888888888 4466666664
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.76 E-value=21 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCC
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKD 326 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g 326 (649)
.+..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777543
No 391
>PRK10941 hypothetical protein; Provisional
Probab=59.20 E-value=63 Score=31.08 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
+.+-.+|.+.++++.|+...+.+. +.|+ +.-|.--+-.+.+.|....|..-++.-++.-|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 345556778888888888887765 4444 556666777778888888888888888888887766543
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.01 E-value=3.2e+02 Score=31.23 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLR 324 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (649)
-|..|+..|...|.+++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 367777788888888888888877765
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.95 E-value=14 Score=33.99 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006343 477 ILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
++...|+.+.|.+++.+.. . +.....|--+...--+.|+++.|.+.+++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456677778888887765 3 3346678777777778888888888888888888865
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.35 E-value=35 Score=26.07 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=20.2
Q ss_pred CCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHH
Q 006343 278 KGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEA 315 (649)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (649)
.|+.+.|.++++.++ +.+..|..+++++...|+.+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355555555555555 5555555555555555554433
No 395
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.23 E-value=1.2e+02 Score=32.00 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNIDE--RNIV---SYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
..|+.-|.+++++++|..++..|.= .... +.+.+.+.+.+..-..+....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4577789999999999999998871 1222 233334444444434444555555544
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.03 E-value=27 Score=27.22 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=35.4
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC---------CchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDS---------ATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
+...||+..|.+.+.+.+...... ..+...++.++...|.+++|.. +++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888877777776632211 2345678888899999999998 555554
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.60 E-value=70 Score=26.43 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 415 EALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
+..+-+.......+-|+.......|.||.+.+++..|.++|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34445556666778999999999999999999999999999998874 3444445665553
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.02 E-value=89 Score=24.15 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
..+++.++.+|+|......++..+...|++++|.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~ 43 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALD 43 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555666666666666666666666666666
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.83 E-value=1.3e+02 Score=28.86 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--
Q 006343 404 ISGFAQNGLGEEALNLFRKMKD--EGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILG-- 479 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~-- 479 (649)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.|.+..+.++-..-.+..+ .-+..-|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6777777888877766544433 2234433333333 37777887777777666655211 112334777766654
Q ss_pred ---hcCCHHHHHHHHHhCC
Q 006343 480 ---RAGSLAEAIDLINSMT 495 (649)
Q Consensus 480 ---~~g~~~~A~~~~~~~~ 495 (649)
=.|.++||++++..-.
T Consensus 167 VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHhccccHHHHHHHHhcCC
Confidence 4688999998885544
No 400
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.66 E-value=62 Score=33.26 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
++.+-++.+.+++|+..|-..+++++++.|.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4556666677999999999999999999983
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.62 E-value=27 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555666666666666665543
No 402
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.56 E-value=2.9e+02 Score=29.98 Aligned_cols=76 Identities=12% Similarity=-0.092 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC---CchHHHH
Q 006343 483 SLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG---KKRDGNR 555 (649)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~ 555 (649)
+...+..++......-+......|...+.. ..+.+.|...+.++-+.. +.....|+.++..-- ++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 334444444444333333333333333321 234566666666555544 555566666655421 1445555
Q ss_pred HHHHHh
Q 006343 556 VRMKKK 561 (649)
Q Consensus 556 ~~~~~~ 561 (649)
+.....
T Consensus 531 ~~~~~~ 536 (552)
T KOG1550|consen 531 YYDQAS 536 (552)
T ss_pred HHHHHH
Confidence 444333
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.72 E-value=42 Score=30.42 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 498 PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 498 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333333344444444444444444444433
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.22 E-value=1.1e+02 Score=24.56 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 347 LNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
.++|..|.+.+...+-. ...+.-.-+..+...|++++|...=.....||...|-++.. .+.|-.+++...+.++-..
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544431 22222233444566777777744444444677777766533 4567777777777766655
Q ss_pred CCCCCHHHHH
Q 006343 427 GLVPNQITFL 436 (649)
Q Consensus 427 g~~p~~~t~~ 436 (649)
| .|....|.
T Consensus 99 g-~~~~q~Fa 107 (116)
T PF09477_consen 99 G-SPELQAFA 107 (116)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 4 44444443
No 405
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.38 E-value=1.4e+02 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=16.2
Q ss_pred hcCChhHHHHHHHHHhccCCC-CCchHHHHHHHHH
Q 006343 512 THLNLDLAKLAAQHLMELEPD-SATPYVVLSDLYS 545 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 545 (649)
+.|-...|.+.++-++.++|. ||-....++.+|+
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 444455555555555555554 4444444444443
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.08 E-value=2.6e+02 Score=28.52 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 006343 205 LGNSIITMYGRLGFMDEANKVFSMMSK------RDAVSWNSLISGYVHNGEIEEAYRLFER 259 (649)
Q Consensus 205 ~~~~l~~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 259 (649)
...-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 445677889999999999999988543 2334555666666666666655544443
No 407
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.98 E-value=2.6e+02 Score=28.50 Aligned_cols=123 Identities=10% Similarity=0.039 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--------HHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQITFLSVL--------SACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDI 477 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 477 (649)
+.++.+|.++-+.....-..-|..|+..+. .++-..|+...-...+....+...+..+ ....+||++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 355666666555544332223333333222 2334456655555555555544344433 3345667777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC--hhHHHH----HHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 478 LGRAGSLAEAIDLINSMTFEPP--PGVWGA----LLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~~~~~--~~~~~~----ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
|...+.++.|..++.+.+.+.. ..-|.- +...-..++++..|.+.+-.++...|+
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 7778888888888887763221 112211 122234567777777777777776664
No 408
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.64 E-value=1e+02 Score=32.68 Aligned_cols=131 Identities=15% Similarity=0.049 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHhhcc--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCC-CCCC--hhH
Q 006343 429 VPNQITFLSVLSACNHV--GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILG-RAGSLAEAIDLINSMT-FEPP--PGV 502 (649)
Q Consensus 429 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~-~~g~~~~A~~~~~~~~-~~~~--~~~ 502 (649)
.|+..|...++.-...- ..-+-|-.+|..|.+ .+.|--...+ +..+|- -.|+...|...+.... ..|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 47777776666544332 223445566666654 3444433332 233443 4688999988877654 3332 234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
...|.+...+.|-.-.|-..+.+.+.+..+.|-++..++++|....+.+.|++ ++.+|+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 45677777777777788899999999888889999999999999999999999 8888864
No 409
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=2.6e+02 Score=28.30 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCC------ChhH--HHHHHHHHHhcCChhHHHHHHHHHhc---cCCCC----Cch
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMTFEP------PPGV--WGALLGAGRTHLNLDLAKLAAQHLME---LEPDS----ATP 536 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~~~~------~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~----~~~ 536 (649)
..|+..+-.+|+.++|.+++.+.+++. ...+ .---+..|...+|+-.|--..+++.. -+|+- -..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 446777889999999999999987321 1111 12234678889999999888888765 23321 235
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeC
Q 006343 537 YVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAG 586 (649)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~ 586 (649)
|.++..+..+.+.+=++.+..+.+-+-|-.+...--|+++.-.+-.|..-
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 78888888899999999998888877766655444577766666566643
No 410
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=51.78 E-value=4.5 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=17.4
Q ss_pred ccccccchhhhhhhcCCCcccc
Q 006343 624 RDWSYTADNIKRIKKFDWPKQY 645 (649)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~ 645 (649)
+.+...|.-.-+.|+||||...
T Consensus 3 ~~Q~e~L~~A~~~GYfd~PR~~ 24 (53)
T PF04967_consen 3 DRQREILKAAYELGYFDVPRRI 24 (53)
T ss_pred HHHHHHHHHHHHcCCCCCCCcC
Confidence 4456678888899999999763
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.64 E-value=2.6e+02 Score=27.84 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh---cCCHHHHH
Q 006343 413 GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGR---AGSLAEAI 488 (649)
Q Consensus 413 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~---~g~~~~A~ 488 (649)
.+.-+.++++.++.+ +-+.......+..+.+....++..+-++.+... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 355667788877763 344556667777888888888888888888773 34 46677666665543 22455555
Q ss_pred HHHHhCC-------CC--------C--ChhHHHHHHHHH---HhcCChhHHHHHHHHHhccC
Q 006343 489 DLINSMT-------FE--------P--PPGVWGALLGAG---RTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 489 ~~~~~~~-------~~--------~--~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~ 530 (649)
.+|.+.. .. + +......++..| +..|-.+.|..+++-++|++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5544321 11 1 122333344443 58999999999999999954
No 412
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=51.59 E-value=4.4e+02 Score=30.49 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDIL 478 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l 478 (649)
-|..+..++..+..+......++..+.. +..--.+.+.++.+.+. .+....++.....+.-.|- ..-|-.+.-.-
T Consensus 675 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~ 750 (863)
T TIGR02414 675 RNACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATS 750 (863)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCC
Confidence 3555555555555433333334444332 22222334444443333 2333344444443333443 33333333322
Q ss_pred HhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcC------ChhHH-HHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 006343 479 GRAGSLAEAIDLINSMTFEP-PPGVWGALLGAGRTHL------NLDLA-KLAAQHLMELEPDSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~ll~~~~~~g------~~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (649)
.+.+-++...++.+.-.+.+ ++.-..+|++++...+ .-..+ .-+.+.+++++|-||..-..|+..+.+=.++
T Consensus 751 ~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~ 830 (863)
T TIGR02414 751 PRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKL 830 (863)
T ss_pred CcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcC
Confidence 23333444444433333332 3445678888875332 22333 4467788899999999999999999999999
Q ss_pred hHHHH--HHHHHhh
Q 006343 551 RDGNR--VRMKKKL 562 (649)
Q Consensus 551 ~~a~~--~~~~~~~ 562 (649)
++..+ ++..++.
T Consensus 831 ~~~r~~~m~~~l~~ 844 (863)
T TIGR02414 831 DPKRQELMKAALER 844 (863)
T ss_pred CHHHHHHHHHHHHH
Confidence 99888 5666654
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.40 E-value=3e+02 Score=28.55 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChHHHHHHH
Q 006343 328 RPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNI---DERNIVSYNSMI 404 (649)
Q Consensus 328 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 404 (649)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444555554443 6777777777776554321111 11222222211 112223344455
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 006343 405 SGFAQ---NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG 446 (649)
Q Consensus 405 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 446 (649)
+++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999998887666555555554444
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.31 E-value=2.3e+02 Score=27.17 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=65.2
Q ss_pred HhcCCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHccCChh-HHHHHHHHHH---HhC--CCCcccHHHHHHHH
Q 006343 306 FVNNEQYEEAFRWFIE----MLRKDVRPNQLTLSSVLSASAATATLN-QGSQIHAHVV---KMN--MESDVSIQNSLVSL 375 (649)
Q Consensus 306 ~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~l~~~ 375 (649)
+.++|+...|-++-.- ..+.+.++|......++..+...+.-+ .-..+...++ +.+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4445554444333222 223455566655555555554443221 1222222222 222 23477888889999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 006343 376 YSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYF 455 (649)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 455 (649)
|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++. |...|++..|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHH
Confidence 99999999999887654444333332233333333332222 1222222332 44557788888777
Q ss_pred HHhHH
Q 006343 456 KSMKT 460 (649)
Q Consensus 456 ~~~~~ 460 (649)
+...+
T Consensus 165 ~~f~~ 169 (260)
T PF04190_consen 165 DTFTS 169 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.91 E-value=2.2e+02 Score=26.83 Aligned_cols=157 Identities=12% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC-NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR- 480 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~- 480 (649)
++...-+.|++++++..++++...+...+..--+.+-.|| ...|....+++++..+...-.-..+ .....++.-|..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 4566677888888888888888876666655444444444 2234555566666665543222222 222222222211
Q ss_pred -----cCCHHHHHHHHHhCCC----CCChhHH-HH-HHHHHH-----hcC-----ChhHHHHHHHHHhc-----cCCCCC
Q 006343 481 -----AGSLAEAIDLINSMTF----EPPPGVW-GA-LLGAGR-----THL-----NLDLAKLAAQHLME-----LEPDSA 534 (649)
Q Consensus 481 -----~g~~~~A~~~~~~~~~----~~~~~~~-~~-ll~~~~-----~~g-----~~~~a~~~~~~~~~-----~~p~~~ 534 (649)
..--.+...+++.... .+...++ .- -+.-|+ ..| -.+.|..+|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1112345556655431 1222222 11 122222 122 24677888888776 677666
Q ss_pred chHHHHH---H-HHHhcCCchHHHHHHHHH
Q 006343 535 TPYVVLS---D-LYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 535 ~~~~~l~---~-~~~~~g~~~~a~~~~~~~ 560 (649)
..+-+.. . .|...|+.++|.++-+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5443322 2 345689999999965544
No 416
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.77 E-value=27 Score=33.50 Aligned_cols=91 Identities=16% Similarity=0.274 Sum_probs=61.7
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCC
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKS 589 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~ 589 (649)
.++.|+.++|..+++.++.+.|.++..+.-++.......+.-+|....- +.+.-.||.|--- +..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~----~ALtisP~nseAL--------vnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV----KALTISPGNSEAL--------VNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh----eeeeeCCCchHHH--------hhhhcc
Confidence 4578999999999999999999999999998888777777666666332 1233456654332 233555
Q ss_pred CCCHHHHHH-HHHHHHHhhhhcCC
Q 006343 590 CLDLKEIEV-TLQTISKGTKEFDW 612 (649)
Q Consensus 590 hp~~~~i~~-~l~~l~~~~~~~~~ 612 (649)
-|..++|.. .++.+..+-++...
T Consensus 194 ~plV~~iD~r~l~svdskrd~~~~ 217 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDSKRDEFNH 217 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777764 45555555444443
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.44 E-value=49 Score=30.00 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=36.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
..++.+......+.+.+.....|++..|..++.++...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555544567888888888888888888888888777765
No 418
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.41 E-value=3.2e+02 Score=28.59 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=67.6
Q ss_pred HHHhcCCHHHHHHHHHhcC---C------C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH---
Q 006343 375 LYSKCGNVVDAYRIFTNID---E------R---NIVSYNSMISGFAQNGLGEEALNLFRKMKD-------EGLVPNQ--- 432 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~---~------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~--- 432 (649)
.+--.|+...|.+++.... + | .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4455688889988887654 1 1 223578887777888888888888877664 4555542
Q ss_pred --------HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006343 433 --------ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDIL 478 (649)
Q Consensus 433 --------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l 478 (649)
.+|+.- -.+.+.|++-.|.+.|....+.+. .++..|-.|...|
T Consensus 329 ls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~vfh--~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 329 LSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHVFH--RNPRLWLRLAECC 379 (696)
T ss_pred hhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 234332 247788999999999988888654 4455566665555
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.16 E-value=3.1e+02 Score=28.31 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCC----
Q 006343 42 AAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKG---- 116 (649)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g---- 116 (649)
|-++..|...|+..+|.+..+++... ..+...-.+++.+....-.-.....++.+....+....+.+..++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sld 297 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLD 297 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccc
Q ss_pred ----ChhHHHHHhccCCCCCc---------------------------ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 006343 117 ----RVIEAREIFDKMPEKNV---------------------------VAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMA 165 (649)
Q Consensus 117 ----~~~~A~~~f~~~~~~~~---------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 165 (649)
++..|...|+.+..+.+ ..-..+|+-|...|+..+.++.++++-.....
T Consensus 298 dl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~ 377 (645)
T KOG0403|consen 298 DLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYN 377 (645)
T ss_pred cccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCcccc
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhH---------------------------------------
Q 006343 166 FNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILG--------------------------------------- 206 (649)
Q Consensus 166 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------------------------------------- 206 (649)
|--.-+..-+..=.+...-+.|-.++..+--.-+.+..+.-
T Consensus 378 ~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~ 457 (645)
T KOG0403|consen 378 PGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPT 457 (645)
T ss_pred chHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccC
Q ss_pred -------------------------------------------------------HHHHHHHHhcCCHHHHHHHHhhCCC
Q 006343 207 -------------------------------------------------------NSIITMYGRLGFMDEANKVFSMMSK 231 (649)
Q Consensus 207 -------------------------------------------------------~~l~~~y~~~g~~~~A~~~~~~~~~ 231 (649)
..|+.-|...|++.+|.+..+++.-
T Consensus 458 ~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgm 537 (645)
T KOG0403|consen 458 NLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGM 537 (645)
T ss_pred cHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCC
Q ss_pred C---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHc
Q 006343 232 R---DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSS 277 (649)
Q Consensus 232 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 277 (649)
| ..+.+-+++.+.-+.|+-...+.+++..-.....|.+.|-.+|.+
T Consensus 538 PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 538 PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.59 E-value=2.3e+02 Score=26.69 Aligned_cols=57 Identities=7% Similarity=0.099 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHH
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAA-TATLNQGSQIHAHV 357 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~ 357 (649)
.++..+-+.|+++++...++++...+...+..-.+.+-.+|-. .|....+..++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3566677788888888888888887666665555555545422 23344444444433
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.15 E-value=2.9e+02 Score=28.12 Aligned_cols=52 Identities=15% Similarity=-0.079 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----Hhh--ccCcHHHHHHHHH
Q 006343 405 SGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS----ACN--HVGLVEEGFIYFK 456 (649)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~--~~g~~~~a~~~~~ 456 (649)
..+.+.+++..|.++|+++.+...+|+...+...+. +|. ..-+.++|.+.++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345667889999999999988765555544332222 221 2344555555554
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.64 E-value=2e+02 Score=25.72 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
..+..|...|.+++|.+++++.++ +|++...-..|..+-.....+.....
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 345679999999999999999999 88776665556555554444444433
No 423
>PRK14015 pepN aminopeptidase N; Provisional
Probab=48.46 E-value=4.9e+02 Score=30.17 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 006343 401 NSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILG 479 (649)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~ 479 (649)
|..+..++..+..+......++..... +..--.+.+.++.+.+.. +....++...+.+.-.|- ..-|-.+.-.-.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQAD---NMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCC---CHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 444444444444333333444444432 222233344444443332 333344444443333443 333444433333
Q ss_pred hcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCC------hhHHH-HHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 006343 480 RAGSLAEAIDLINSMTFEP-PPGVWGALLGAGRTHLN------LDLAK-LAAQHLMELEPDSATPYVVLSDLYSVIGKKR 551 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~-~~~~~~~ll~~~~~~g~------~~~a~-~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (649)
+.+-++...++.+.-.+.+ ++.-..+|++++...+- -..+. -+.+.+++++|-||..-..|+..+.+-.+++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~ 841 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYD 841 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccC
Confidence 3333444444444333433 34456788888753332 23344 4677888999999999999999999999999
Q ss_pred HHHH--HHHHHhh
Q 006343 552 DGNR--VRMKKKL 562 (649)
Q Consensus 552 ~a~~--~~~~~~~ 562 (649)
+..+ ++..++.
T Consensus 842 ~~r~~~~~~~l~~ 854 (875)
T PRK14015 842 PKRQALMRAALER 854 (875)
T ss_pred HHHHHHHHHHHHH
Confidence 9888 5666554
No 424
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.57 E-value=4.1e+02 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=13.2
Q ss_pred chHHHHHHHHHhcCChhhHHHHHhhc
Q 006343 39 VSYAAMITGFVRRGMFYEAEELYVNM 64 (649)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m 64 (649)
.=|+ .+..+.-.|.++.|.+++...
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 3455 455555666666666666444
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.89 E-value=1.2e+02 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006343 135 AWTAMVDGYMKVDCFEDGFDLFLSMRR 161 (649)
Q Consensus 135 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 161 (649)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999998876
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.78 E-value=3.3e+02 Score=27.74 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCH
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDE------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDE---------GLVPNQ 432 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 432 (649)
.+.-+.+-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++......-.+..+. .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 345577888899999999999888552 23345666666666667776666666555542 123334
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHh
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSM 458 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~ 458 (649)
..+.++..-+.+ ++..|.++|-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 444444443333 566666555443
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.78 E-value=1.5e+02 Score=23.83 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
-|..++..|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888999999998888776
No 428
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.12 E-value=7.9e+02 Score=31.62 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=146.0
Q ss_pred HHHHHHccCChHHHHHHHHhc----ccC--ChhHHHHHHHHHHhCCChhHHHHHhc-cCCCCCcccHHHHHHHHHhcCCh
Q 006343 77 LISGYLKVGRCEEAARIFEAM----VEK--DVVAWGSMVDGYCKKGRVIEAREIFD-KMPEKNVVAWTAMVDGYMKVDCF 149 (649)
Q Consensus 77 ll~~~~~~~~~~~a~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~ 149 (649)
+..+-.+++.+.+|...++.- .+. ....+..+...|+..++++....+.. +..+++. ..-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 334555677777777777762 111 12234444457777777777666655 2333332 2334445566778
Q ss_pred hHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHh
Q 006343 150 EDGFDLFLSMRRGGMAFN-SITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGN-SIITMYGRLGFMDEANKVFS 227 (649)
Q Consensus 150 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~y~~~g~~~~A~~~~~ 227 (649)
..|...|+.+.+. .|+ ..+++-+++.....+.+....-..+-.... ..+...-++ .=+.+--+.+++|.......
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888777764 333 456666666555555555444322222111 112222222 22223345556655555444
Q ss_pred hCCCCChhhHHHH--HHHHHhcCCHH--HHHHHHhhCC-------------CCChhHHHHHHHHHHcCCChHHHHHHHhh
Q 006343 228 MMSKRDAVSWNSL--ISGYVHNGEIE--EAYRLFERMP-------------GKDFVSWTTMITGFSSKGNLEKSIELFNM 290 (649)
Q Consensus 228 ~~~~~~~~~~~~l--i~~~~~~g~~~--~A~~~~~~m~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (649)
.++..+|.+. +....+..+-+ .-.+..+.++ ..=...|..++..+.-+.--.....++..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKV 1619 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555443 22222211111 0001111111 00012344444433332222222222111
Q ss_pred CCCC----ChhhHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHh
Q 006343 291 MPEK----DDVTWTAIISGFVNNEQYEEAFRWFIEML-RKDVRPN-----QLTLSSVLSASAATATLNQGSQIHAHVVKM 360 (649)
Q Consensus 291 ~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (649)
-... +..-|-.-+.--....+..+-+--+++.. ....+|+ ..+|....+.+...|.++.|....-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 1111 22234444333222222333333333322 2212222 246777777888899999888877766666
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006343 361 NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID 393 (649)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (649)
+ -+.++--.....-..|+...|..++++..
T Consensus 1700 r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1700 R---LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred c---cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 5 33455566777888899999999888754
No 429
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.97 E-value=3.6e+02 Score=27.60 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 006343 294 KDDVTWTAIISGFVN---NEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATA 345 (649)
Q Consensus 294 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 345 (649)
++-..+..+|+++.+ -.+++.|+-++-+|++.|-.|-...-..+.-+....|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 455566677777754 5889999999999999997787666666666655544
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.69 E-value=49 Score=25.21 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChh
Q 006343 93 IFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFE 150 (649)
Q Consensus 93 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 150 (649)
+++.+++.++.+....-..-+...+.+.|.++++-++.++..+|.....++-..|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4444455555555544444455555666666666666666666666666665555443
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.44 E-value=1.9e+02 Score=26.77 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLVP---NQITF--LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYAC 473 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 473 (649)
-.|.||--|..+..+.+|.+.|.+ +.|+.| |..++ ..-+......|++++|++...++... -+.-|.+.+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 455565555555555555555543 334444 22222 23344556777777777776655432 22333322222
Q ss_pred HHH----HHHhcCCHHHHHHHHHh
Q 006343 474 MVD----ILGRAGSLAEAIDLINS 493 (649)
Q Consensus 474 l~~----~l~~~g~~~~A~~~~~~ 493 (649)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 24688888888888875
No 432
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.42 E-value=2.5e+02 Score=25.61 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
..+.++..+...|+++.|-+.|.-++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3445555555556666666665555543
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.41 E-value=2.9e+02 Score=26.34 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=130.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---------CCChhHHHHHHHHHHcCCChHHHHHHHhhCCC-----CChh----hH
Q 006343 238 NSLISGYVHNGEIEEAYRLFERMP---------GKDFVSWTTMITGFSSKGNLEKSIELFNMMPE-----KDDV----TW 299 (649)
Q Consensus 238 ~~li~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~ 299 (649)
-.+|..+.+.|++++..+.|.++. .-+....|++++..+...+.+.-...++.-.+ +|.. |-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 345555555566555555555553 11334555555555555555444444432211 1222 22
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHHHccCChhHHHHHHHHHHHhC-CCCccc
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRKDV----RPN-------QLTLSSVLSASAATATLNQGSQIHAHVVKMN-MESDVS 367 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 367 (649)
+-|...|...|++.+..++++++.+.-- .-| ...|..-+..|....+-...+.++.+..... --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4455666666666666666666543210 011 1245555666666666667777777544322 123333
Q ss_pred HHHHH----HHHHHhcCCHHHHHHHH-HhcC------CCCh---HHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCC
Q 006343 368 IQNSL----VSLYSKCGNVVDAYRIF-TNID------ERNI---VSYNSMISGFAQNG----LGEEALNLFRKMKDEGLV 429 (649)
Q Consensus 368 ~~~~l----~~~~~~~g~~~~A~~~~-~~~~------~~~~---~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~ 429 (649)
+...+ ..|..+.|++++|..-| +... .|-. .-|-.+...+.+.| +..+| .-..-.
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNd 301 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKND 301 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCC
Confidence 32222 23455667777765433 2222 1111 12333334444333 11111 001113
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----C-----CCCC
Q 006343 430 PNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSM-----T-----FEPP 499 (649)
Q Consensus 430 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-----~-----~~~~ 499 (649)
|.....+.++.+|-. ++..+-.+++..-.. .+-.|+..-..+-+++ +.=+..--+++++-. | ...+
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~--~IM~DpFIReh~EdLl-~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~ 377 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKSNRS--NIMDDPFIREHIEDLL-RNIRTQVLLKLIKPYTNIGIPFISKELNVP 377 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc--cccccHHHHHHHHHHH-HHHHHHHHHHHhccccccCchhhHhhcCCC
Confidence 455677778877755 455555555554443 4555555444443333 222222233333311 1 1122
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
..-..+|+-.|.....++.-+.-..++++++.
T Consensus 378 ~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~ 409 (440)
T KOG1464|consen 378 EADVESLLVSCILDDTIDGRIDEVNQYLELDK 409 (440)
T ss_pred HHHHHHHHHHHHhccccccchHHhhhHhccCc
Confidence 33345666667644434434444555666554
No 434
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=44.25 E-value=66 Score=32.58 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
|...|...++.+.|+....+.+-++|..+..+..-+-++....+|.+|.+
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777777777777776666666666667766665
No 435
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.62 E-value=86 Score=30.18 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMK 424 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 424 (649)
.....|..+|.+.+|.++.+.... -+...|-.++..++..|+--.|.+.++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556666666666666665552 344456666666666666666666555553
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.54 E-value=2.7e+02 Score=26.84 Aligned_cols=86 Identities=10% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRK--DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK- 378 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 378 (649)
=|.+++..+++.+++...-+--+. .++|...- .-|-.|++.+......++-+.-.+..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356677777777776655444331 23332222 2222344555555555444433332222233334444444433
Q ss_pred ----cCCHHHHHHHH
Q 006343 379 ----CGNVVDAYRIF 389 (649)
Q Consensus 379 ----~g~~~~A~~~~ 389 (649)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 34445544443
No 437
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.46 E-value=1.1e+02 Score=25.35 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=33.0
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 493 SMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 493 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
.+..-|++.+..+-+.+|++-+|+..|.+.++-+...-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 344679999999999999999999999999998775433
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.10 E-value=2.2e+02 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 396 NIVSYNSMISGFAQNGL-GEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44567777777755444 234566777777767777777777777777663
No 439
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.94 E-value=83 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcHHHHHHH
Q 006343 409 QNGLGEEALNLFRKMKDEGLVPN--QITFLSVLSACNHVGLVEEGFIY 454 (649)
Q Consensus 409 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 454 (649)
...+.++|+..+...++.-..|. -.++..++.|++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776433322 24666777788888888777665
No 440
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.20 E-value=5.3e+02 Score=28.48 Aligned_cols=210 Identities=10% Similarity=0.111 Sum_probs=84.8
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCCChh--hHH
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMP---EKNVVAWTAMVDGYMKVDC-------FEDGFDLFLSMRRGGMAFNSI--TLT 172 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~--t~~ 172 (649)
.-++|-.+.|||++++|.++..+.. .+....+-..+..|..+.+ -++...-|++..+.....|++ ..-
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 193 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 3456777889999999999983332 2444566677777766532 235556666666554433543 222
Q ss_pred HHHHHHhccC-Ch-HHHHHHHH------HHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH
Q 006343 173 ILFEACGRFF-RY-REGVQVHG------LVSRFGFDY-----DIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNS 239 (649)
Q Consensus 173 ~ll~a~~~~~-~~-~~a~~~~~------~~~~~g~~~-----~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 239 (649)
.+|..|--.. .. +-+..+-+ .+++..... +..++..|=+...+-| ...|.. ..++. .
T Consensus 194 ~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~---~ 263 (613)
T PF04097_consen 194 KILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPL---L 263 (613)
T ss_dssp HHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------
T ss_pred HHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHH---H
Confidence 2333332211 11 11111111 111111111 1122222211111111 112222 11222 2
Q ss_pred HHHHHHhcCCHHHHHHHHhh--CCCCChhHHHHHHHHHH--cCCChHHHHHHHhhCC-CCChhhHHHHHHHHhc---CCC
Q 006343 240 LISGYVHNGEIEEAYRLFER--MPGKDFVSWTTMITGFS--SKGNLEKSIELFNMMP-EKDDVTWTAIISGFVN---NEQ 311 (649)
Q Consensus 240 li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---~g~ 311 (649)
....+.-.|++|.|++.+-+ ....|.+.+...+.-|. +..+... ..++..-. .+...-+..||..|.+ ..+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 34556678999999998887 22223333332222221 1111111 11111111 1122457778887765 568
Q ss_pred HHHHHHHHHHHHHC
Q 006343 312 YEEAFRWFIEMLRK 325 (649)
Q Consensus 312 ~~~A~~~~~~m~~~ 325 (649)
+.+|+++|--+...
T Consensus 343 ~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 343 PREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHc
Confidence 88899988877654
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.95 E-value=93 Score=20.63 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=17.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006343 144 MKVDCFEDGFDLFLSMRRGGMAFNSITLTILF 175 (649)
Q Consensus 144 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 175 (649)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666555555554444
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.87 E-value=69 Score=24.42 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=25.2
Q ss_pred HHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHH
Q 006343 273 TGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEE 314 (649)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (649)
..-+...+.+.+.++++.++.+...+|..+..++...|...-
T Consensus 38 ~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 38 EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 333444556666666666666666666666666666555443
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=40.34 E-value=1e+02 Score=26.33 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 484 LAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
-+.|.++++-|- .....-.........|++.-|..+.+.++..+|++..+-.+.+.+|...|.-.+..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 344555555553 12222334455667999999999999999999999999999999988877554433
No 444
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.16 E-value=1.6e+02 Score=32.40 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=12.4
Q ss_pred hcCChhHHHHHHHHHhccCCC
Q 006343 512 THLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~ 532 (649)
..+..+.|...|+++++.+|.
T Consensus 299 Da~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred chhhHHHHHHHHHHHhccCch
Confidence 344455666666666666663
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.14 E-value=57 Score=31.58 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVL 439 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 439 (649)
.-|+..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 357899999999999999999999999999877777776544
No 446
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.01 E-value=4.5e+02 Score=27.26 Aligned_cols=120 Identities=9% Similarity=-0.024 Sum_probs=61.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCC
Q 006343 200 DYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKG 279 (649)
Q Consensus 200 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 279 (649)
.++..+....++.+.+.+..+....+...+..++...-...+.++...+. +-...+..-+..+|..+-..-+.++...+
T Consensus 97 d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 34555666677777777766666655555555555555455555544332 11112222233455555555555555555
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 006343 280 NLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIE 321 (649)
Q Consensus 280 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (649)
..+..-.+-.-....|...-..-+.+....|. .+|...+..
T Consensus 176 ~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 176 RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 54333333333344455555555555566665 455444444
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.98 E-value=69 Score=22.66 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
..--..++.++...|++++|.++.+.+..
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334455555555555555555554443
No 448
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.86 E-value=1.8e+02 Score=22.58 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=11.0
Q ss_pred HhhccCcHHHHHHHHHHhHH
Q 006343 441 ACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~ 460 (649)
.....|..++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445666666665555544
No 449
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.72 E-value=15 Score=27.59 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc------CCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 482 GSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL------EPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 482 g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
+.++.|.+.+++.. .+-..|+.+.|+..|++.++. -|. + .......|++|.+
T Consensus 3 ~~~~~A~~~I~kaL-------------~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~ 60 (79)
T cd02679 3 GYYKQAFEEISKAL-------------RADEWGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARR 60 (79)
T ss_pred hHHHHHHHHHHHHh-------------hhhhcCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHH
Confidence 34566777776644 112347777787777777661 121 1 2345568999999
Q ss_pred HHHHHhh
Q 006343 556 VRMKKKL 562 (649)
Q Consensus 556 ~~~~~~~ 562 (649)
++..|+.
T Consensus 61 ~~~Km~~ 67 (79)
T cd02679 61 LQQKMKT 67 (79)
T ss_pred HHHHHHH
Confidence 9888875
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.67 E-value=48 Score=32.06 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006343 136 WTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTIL 174 (649)
Q Consensus 136 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 174 (649)
||..|...++.|+.++|+.++++..+.|+.--..||...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 678888888888888888888888888876555555443
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.89 E-value=40 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006343 143 YMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEAC 178 (649)
Q Consensus 143 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 178 (649)
.-..|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33456778899999999999998885 55565544
No 452
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.41 E-value=61 Score=19.45 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 515 NLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
.++.|..++++.+...| ++..++..+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888888 677666554
No 453
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.83 E-value=3.1e+02 Score=24.78 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=48.3
Q ss_pred hCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCC-------
Q 006343 290 MMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNM------- 362 (649)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------- 362 (649)
.-.++..+.|-.+..+-++.-+.+++-+.|-- .+=.+++-.|-+.-++.+++.++..+.+..+
T Consensus 101 d~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKG 170 (233)
T PF14669_consen 101 DSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKG 170 (233)
T ss_pred cccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 33334445565555555555444443332210 1112344455566666677766665554322
Q ss_pred -------CCcccHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 363 -------ESDVSIQNSLVSLYSKCGNVVDAYRIFTN 391 (649)
Q Consensus 363 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 391 (649)
.+.-.+.|.-...+.++|.+|.|..++++
T Consensus 171 L~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 171 LTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22234456666677777777777777764
No 454
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.74 E-value=46 Score=30.71 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=45.6
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
...+|.+.+.+++.+++++-|+....|..++....++|+.+.|.+ +++.++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999 555443
No 455
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.44 E-value=3.8e+02 Score=25.68 Aligned_cols=151 Identities=10% Similarity=0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCCh-----HHHHHHHHhc---ccCChhHHHHHHHHH
Q 006343 41 YAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRC-----EEAARIFEAM---VEKDVVAWGSMVDGY 112 (649)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~---~~~~~~~~~~li~~~ 112 (649)
...+++.+.+.|...+|..+.+.+...+.-..+.-.++......... ......+... ++.-+ .|-.++.-|
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~-~~l~Ivv~C 163 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFP-EYLEIVVNC 163 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCc-chHHHHHHH
Confidence 56778888888888888888777765433334444444433222111 1111112111 11111 133333334
Q ss_pred HhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC-----ChhhHHHHHHHHhccCChHH
Q 006343 113 CKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGG-MAF-----NSITLTILFEACGRFFRYRE 186 (649)
Q Consensus 113 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-----~~~t~~~ll~a~~~~~~~~~ 186 (649)
.|.=+...=..+|+.... =..|..-|.+.|+.+.|-.++--+...+ ... +...-.-++......++++.
T Consensus 164 ~RKtE~~~W~~LF~~lg~-----P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~L 238 (258)
T PF07064_consen 164 ARKTEVRYWPYLFDYLGS-----PRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDL 238 (258)
T ss_pred HHhhHHHHHHHHHHhcCC-----HHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHH
Confidence 443344444455554432 2255666666777776666665554322 111 22333445555555666666
Q ss_pred HHHHHHHHHHc
Q 006343 187 GVQVHGLVSRF 197 (649)
Q Consensus 187 a~~~~~~~~~~ 197 (649)
+.++...+...
T Consensus 239 c~eL~RFL~~l 249 (258)
T PF07064_consen 239 CFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHHHh
Confidence 66666655544
No 456
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.30 E-value=4.9e+02 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 006343 297 VTWTAIISGFVN---NEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATA 345 (649)
Q Consensus 297 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 345 (649)
..+..+++++.+ .++++.|+.++..|++.|..|....-..+..++...|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 345555666555 5889999999999999998887666555555554443
No 457
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.24 E-value=82 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcC
Q 006343 93 IFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVD 147 (649)
Q Consensus 93 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 147 (649)
+++.+.+.++.+-...-...+...+.+.+.++++.++.++..+|.....++-..+
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 4444444445554444444455556667777777777777767777666665444
No 458
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.63 E-value=61 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
|-.---.+|.||.+.|++++|.+..+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344568888999999999888888765
No 459
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.55 E-value=3.6e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=19.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLV 429 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~ 429 (649)
....|+++.|+++.+..++.|.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45678999999999999998854
No 460
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.79 E-value=69 Score=20.09 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 535 TPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
.+|..|+.+....+++++|.+ +.+.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 467888999999999999888 655553
No 461
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=4.1e+02 Score=25.65 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCChhHHH
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVRPNQLT-------LSSVLSASAATATLNQGS 351 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~ 351 (649)
+..-.++.++.++|+..|.+.+..|+..|..+ ...+...|...|+.....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 44556778899999999999999887766544 344555555555544433
No 462
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.57 E-value=4.3e+02 Score=27.75 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=46.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIRKSPG 570 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g 570 (649)
+.++....++..+.+-.+.++...-+.+.+..+-++.+...|++..|.++.- ..++.++||
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 4455667778888888888888777788888899999999999999988432 245555555
No 463
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=4.2e+02 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhhccCcHHH
Q 006343 405 SGFAQNGLGEEALNLFRKMKDEGLVPNQIT-------FLSVLSACNHVGLVEE 450 (649)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~ 450 (649)
+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 334556778888888888888877766544 3344445555555443
No 464
>PRK14700 recombination factor protein RarA; Provisional
Probab=35.31 E-value=4.4e+02 Score=25.81 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHhCC
Q 006343 295 DDVTWTAIISGFVN---NEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT-----LNQGSQIHAHVVKMNM 362 (649)
Q Consensus 295 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 362 (649)
+...+..+|+++.+ -.|++.|+-++-+|++.|-.|....-..++.++...|. +..+...++.....|+
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444556777754 58999999999999999999988888788877776663 3333444444444443
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.65 E-value=2e+02 Score=26.19 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH-HHHHHhcCCchHHHHHHHHHhh-CCCccCCceeEEEECCE
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL-SDLYSVIGKKRDGNRVRMKKKL-KRIRKSPGCSWIILKDK 579 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~g~s~i~~~~~ 579 (649)
....++..|...||.+.|.+++--++...+-|....-.+ +.++...+.-....+..+.|.. ...++.- ...+.....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~-~~~~~~~~~ 121 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAF-NQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhc-cchhhhhcc
Confidence 345566666677777777777777766555444333222 2344444444333343333322 1111111 111222223
Q ss_pred EEEEeeCCCCC
Q 006343 580 VHLFLAGRKSC 590 (649)
Q Consensus 580 ~~~f~~~d~~h 590 (649)
.+.|..|.+.|
T Consensus 122 ~pvfrsGs~t~ 132 (199)
T PF04090_consen 122 APVFRSGSRTH 132 (199)
T ss_pred cccccCCCccc
Confidence 46788888888
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.62 E-value=82 Score=30.54 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHH-HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 466 PGPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGA-LLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 466 p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
.|+..|...+.--.+.|.+.+...++.++. . +.|+..|-. ..--+..++|++.++..+.+.+.++|++|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 345555555444445555555555555543 2 334556643 22235588999999999999999999999876543
No 467
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=34.04 E-value=1.7e+02 Score=30.30 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=43.8
Q ss_pred cCCceeE-EEECCEEEEEeeCCCCCCCHHHHHHHHH---HHHHhhhhcCCCCCCcccccCCccccccchhhhhhh
Q 006343 567 KSPGCSW-IILKDKVHLFLAGRKSCLDLKEIEVTLQ---TISKGTKEFDWPKHDWSLLGLERDWSYTADNIKRIK 637 (649)
Q Consensus 567 ~~~g~s~-i~~~~~~~~f~~~d~~hp~~~~i~~~l~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (649)
..|+.|+ |...|.++ .| .|+.+.-+..|. .|.++--+.++|.|.-.+....|-=|++++|+.-.|
T Consensus 332 sh~d~sYyir~rgavy----ad--~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d~~~~g 400 (615)
T KOG0508|consen 332 SHPDVSYYIRYRGAVY----AD--SGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQDFAAKG 400 (615)
T ss_pred CCCCceeEEEeeeeee----cC--CccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhhhhhcC
Confidence 3466665 55555443 12 356666666665 344455566889999999999999999999985444
No 468
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.84 E-value=88 Score=29.86 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
++=+++...++.+.|.++.++++.++|.++....--+-+|+..|-..-|.+-...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 3445677889999999999999999999998888899999999999888884443
No 469
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.62 E-value=1.4e+02 Score=19.73 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS 440 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 440 (649)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777766666665553
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.18 E-value=2.8e+02 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 006343 471 YACMVDILGRAGSLAEAID 489 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~ 489 (649)
+..|..++.+.|++++++.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhhccHHHHHH
Confidence 3445555555566555443
No 471
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.52 E-value=4.7e+02 Score=25.30 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=27.0
Q ss_pred ChHHHHHHHhhCCCC-ChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCCC
Q 006343 280 NLEKSIELFNMMPEK-DDVTWTAIISGFVN----NEQYEEAFRWFIEMLRKDVRP 329 (649)
Q Consensus 280 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p 329 (649)
+...|...|....+. .......|...|.. ..+..+|..+|++..+.|..+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 345555555544433 22333334444433 336677777777777776444
No 472
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.01 E-value=1.2e+02 Score=28.70 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 006343 471 YACMVDILGRAGSLAEAIDLINSMTF--------EPPPGVWGALLGAGRTHLNLDLAKLAAQH 525 (649)
Q Consensus 471 ~~~l~~~l~~~g~~~~A~~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 525 (649)
...|...|.+.|++++|.++++.+.. .+...+...++.++...|+.+....+.-+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567778888888888888877530 11122233333444455665555544433
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.86 E-value=2.6e+02 Score=25.03 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHH
Q 006343 474 MVDILGRAGSLAEAIDLINSMTFEPPPGVWGALL 507 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 507 (649)
.|-.|.+.|.+++|.++++..-..|+.......+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 3455677777777777777765455544433333
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.56 E-value=2.6e+02 Score=30.41 Aligned_cols=24 Identities=25% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHH
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+|+.||...|++-++.+++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 444555555555555555554443
No 475
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.42 E-value=3.1e+02 Score=28.17 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCC-----------CCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006343 267 SWTTMITGFSSKGNLEKSIELFNMMP-----------EKDDVTWTAIISGFVNNEQYEEAFRWFIEML 323 (649)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (649)
+...|++.++-.|++..|+++++.+. .-.+.++..+.-+|.-.+++.+|++.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777766666553 2245567777778888888888888887765
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.20 E-value=4.5e+02 Score=24.33 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 006343 473 CMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
.++++..|.|+.++|...|.++.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455556666666666665544
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.76 E-value=3.3e+02 Score=22.63 Aligned_cols=60 Identities=7% Similarity=0.174 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHhh
Q 006343 167 NSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYD-IILGNSIITMYGRLGFMDEANKVFSM 228 (649)
Q Consensus 167 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~ 228 (649)
|...|..+--.+++.-+ .+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 64 nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 478
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=4.8e+02 Score=24.60 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=73.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCH
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLVPNQITF-LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSL 484 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~ 484 (649)
|....++..|+..|.+.+. +.|+..+| ..=+-++.+..+++.+..--....+ +.|+ +.....+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 4455678889997777766 57777554 4444455666677766655444444 6777 33344566666677777
Q ss_pred HHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 006343 485 AEAIDLINSM-------TFEPPPGVWGALLGAGRTHLNLDLAKLAAQH 525 (649)
Q Consensus 485 ~~A~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 525 (649)
++|...+.+. ++.+...+|..|..+-...=++....+.-++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7776665544 4666777888888876666666666665553
No 479
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.72 E-value=6.7e+02 Score=26.62 Aligned_cols=125 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 006343 251 EEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN 330 (649)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (649)
++|+..+-+....|......++..+.....-.--....+.+........-.-+.-....++++.|+.++.+|...|..|.
T Consensus 198 ~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 198 REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHHHccCChh------HHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 331 QLTLSSVLSASAATATLN------QGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 331 ~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
...-..+..++...|.-+ .+..++....+.|.+-......-++-+
T Consensus 278 ~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~ 328 (472)
T PRK14962 278 VLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLGSA 328 (472)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.61 E-value=2.1e+02 Score=31.08 Aligned_cols=69 Identities=9% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHHHHHHccCChHHHHHHHHhcccC---C---hhHHHHHHHHHHhCCChh------HHHHHhccCC-CCCcccHHHHHHH
Q 006343 76 ALISGYLKVGRCEEAARIFEAMVEK---D---VVAWGSMVDGYCKKGRVI------EAREIFDKMP-EKNVVAWTAMVDG 142 (649)
Q Consensus 76 ~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~------~A~~~f~~~~-~~~~~~~~~li~~ 142 (649)
+|+.+|...|++-.+.++++..+.. | ..-+|..++-..+.|.++ .|.+++++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888888888888888877532 1 234666667777777653 3444444332 2455566655554
Q ss_pred HH
Q 006343 143 YM 144 (649)
Q Consensus 143 ~~ 144 (649)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.44 E-value=2.1e+02 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
.+..-.|.++++++.+.+..++..|....|..+...|.
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33344555555555555544455554444444444443
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.77 E-value=2.7e+02 Score=23.79 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcH
Q 006343 401 NSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLV 448 (649)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 448 (649)
..++..+...+..-.|.++++++.+.+...+..|....|..+...|.+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345555666666677777777777776666666666666666666544
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.56 E-value=5.2e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 006343 386 YRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC 442 (649)
Q Consensus 386 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 442 (649)
..+|+-...|.+.....|+..+. .+++++|.+++.++-+.|+.|.... +.+..+|
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 44555556677777777777654 4578999999999999998886543 3344444
No 484
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.46 E-value=1.6e+02 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.423 Sum_probs=20.5
Q ss_pred cCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCC
Q 006343 277 SKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQ 311 (649)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (649)
...+.+.+.++++.++.+...+|..+..++...+.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34455666666666666666666666666654443
No 485
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.47 E-value=1.8e+02 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 518 LAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
.+.+.+.+...+.|..+..+..|++-+...--++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46677888888888776666666655444444444444
No 486
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=5e+02 Score=25.42 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=35.3
Q ss_pred ChhHHHHHHH-HHHHhCCCCcc----cHHHHHHHHHHhcCCHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 006343 346 TLNQGSQIHA-HVVKMNMESDV----SIQNSLVSLYSKCGNVV-DAYRIFTNIDERNIVSYNSMISGFAQNGLGEEAL 417 (649)
Q Consensus 346 ~~~~a~~~~~-~~~~~~~~~~~----~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (649)
.+++...... .+.+.+++ ++ .+|..++++---..+-+ -|.+.+ +....|.-|+.+++.+|+.+-.+
T Consensus 270 p~~evi~~VKee~k~~nlP-e~eVi~ivWs~iMsaveWnKkeelva~qal-----rhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNLP-ETEVIGIVWSGIMSAVEWNKKEELVAEQAL-----RHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CHHHHHHHHHHHHHhcCCC-CceEEeeeHhhhhHHHhhchHHHHHHHHHH-----HHHHhhhHHHHHHhcCChHHHHH
Confidence 3444444444 45555543 43 35666666533221111 122222 24457888999999999877554
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=1.1e+03 Score=27.17 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGF 452 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 452 (649)
......||+++.|.+.-.++. +..+|..|+..-..+|+.+-|...|++.+. |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 345678899999999877766 556899999999999999999999988764 223333456678888877
Q ss_pred HHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 453 IYFKSMKTLYNIEPGPE-HYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 453 ~~~~~~~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
++.+.+.. ..|.. +|.. -.-.|+.++=..+++....-| ..|. ....||.-++|+++.+++-.
T Consensus 719 Km~~iae~----r~D~~~~~qn----alYl~dv~ervkIl~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEI----RNDATGQFQN----ALYLGDVKERVKILENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHh----hhhhHHHHHH----HHHhccHHHHHHHHHhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 66544432 33322 2211 123578888888877654222 1221 23468888999998888776
No 488
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.48 E-value=1.4e+02 Score=31.00 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDE--RNI-VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLV 448 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 448 (649)
.+-+.+.++++.|...+.+..+ ||. +.|..-..++.+.+++..|+.=+.+.++.. |+ ...|..=..+|...+..
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3445566778888888777663 333 334444467777888888887777777653 43 23444445567777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006343 449 EEGFIYFKSMKTLYNIEPGPEHYACMVDILG 479 (649)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~ 479 (649)
.+|...|+.... +.|+..-...+++-+-
T Consensus 89 ~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK---LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh---cCcCcHHHHHHHHHHH
Confidence 777777777665 6777655555554443
No 489
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.00 E-value=4.1e+02 Score=22.16 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=65.1
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHhccC-------ChHHH
Q 006343 118 VIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITL---TILFEACGRFF-------RYREG 187 (649)
Q Consensus 118 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~~-------~~~~a 187 (649)
+.-|.+++.+....+ .....++.+.+..-.-.++++..++....-.|..+.- +.-++.|.... .....
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlv 82 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLV 82 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhH
Confidence 334444444443322 2555666666666666777777777766544443321 22333443222 23334
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 188 VQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMS 230 (649)
Q Consensus 188 ~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 230 (649)
-.....+++.++.....++..+-..+.+..+..+|..+|+.+.
T Consensus 83 cvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 83 CVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 4566677777776667777777788888888888888887653
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.85 E-value=3.7e+02 Score=26.29 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRR 161 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 161 (649)
.-.++..+-+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344555556566555555555542 333445567777888999999998877765
No 491
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.84 E-value=2.1e+02 Score=20.61 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 006343 395 RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNH 444 (649)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 444 (649)
+....++.++..++...-.++++..+.++.+.|. .+..+|.--.+.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777763 455555555554443
No 492
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.15 E-value=7.3e+02 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=26.9
Q ss_pred hhccCcHHHHHHHHHHhHHhcCC--CCChhHH--HHHHHHHHhcCCHHHHHHHHHh
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNI--EPGPEHY--ACMVDILGRAGSLAEAIDLINS 493 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~--~~l~~~l~~~g~~~~A~~~~~~ 493 (649)
..+.++.++|.++++++...... .|+...| ..+..++...|+++++.+.+.+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33445667777777666653221 2333322 3344555566666666655543
No 493
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.80 E-value=2.3e+02 Score=26.86 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006343 404 ISGFAQNGLGEEALNLFRKM 423 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m 423 (649)
..-|...|++++|+++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444555555555555544
No 494
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.68 E-value=6.2e+02 Score=29.65 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 006343 411 GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG--LVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 411 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~ 488 (649)
++.+...+.+.+..+. ..-...-+..+|.+|.+.+ ++++|+.....+.+. +...|.
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae 849 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAE 849 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHH
Q ss_pred HHHHhCC-CCCChhHHHHHHHHH----------HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 489 DLINSMT-FEPPPGVWGALLGAG----------RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 489 ~~~~~~~-~~~~~~~~~~ll~~~----------~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
+.++-+. ..+-...|+.-|+.| ..+.|..+=+-.++++.++.| ...--.+=.+.|+|+.|.+-.
T Consensus 850 ~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~-----~~rry~ID~hLkRy~kAL~~L 924 (928)
T PF04762_consen 850 EALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPP-----LYRRYKIDDHLKRYEKALRHL 924 (928)
T ss_pred HHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCCh-----hheeeeHhhhhCCHHHHHHHH
Q ss_pred HHH
Q 006343 558 MKK 560 (649)
Q Consensus 558 ~~~ 560 (649)
..+
T Consensus 925 ~~~ 927 (928)
T PF04762_consen 925 SAC 927 (928)
T ss_pred Hhh
No 495
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.54 E-value=5.3e+02 Score=28.11 Aligned_cols=56 Identities=18% Similarity=0.020 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
.|.-.|....+++.|.++++++-+.+|.++-.-.....+....|+-++|......+
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33334445555666666666666666655555555555555566666665543333
No 496
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.39 E-value=1.1e+03 Score=26.82 Aligned_cols=300 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006343 79 SGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLS 158 (649)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 158 (649)
..|...|+++.|.++-+.-++.=..+...-...|.+.+++..|-+++.++ ..++..+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHH-------------------HHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006343 159 MRRGGMAFNSITLTILFEACGRFFRYREGVQVH-------------------GLVSRFGFDYDIILGNSIITMYGRLGFM 219 (649)
Q Consensus 159 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~-------------------~~~~~~g~~~~~~~~~~l~~~y~~~g~~ 219 (649)
=+-..++|...+=..+|....-.-.+++--.+- ..+.......+....-+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhH
Q 006343 220 DEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTW 299 (649)
Q Consensus 220 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 299 (649)
+.+..+-.-|.. |..++.-+++.+.+++|++++..- .+........-.+...--.+-.......=......--
T Consensus 521 e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~--~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li 593 (911)
T KOG2034|consen 521 EELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQ--RNPELFYKYAPELITHSPKETVSAWMAQKDLDPNRLI 593 (911)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhh
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006343 300 TAIISGFVNN---EQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLY 376 (649)
Q Consensus 300 ~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (649)
..++..+.+. .....++..++-....--.-+...++.++..++...+-+.-...-......+- ...-...-+.+|
T Consensus 594 ~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc 671 (911)
T KOG2034|consen 594 PPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLC 671 (911)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHhc
Q 006343 377 SKCGNVVDAYRIFTNI 392 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~ 392 (649)
.+.+.-..+..++..|
T Consensus 672 ~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 672 LKFKKTRACVFLLCML 687 (911)
T ss_pred HHhCccceeeeHHHHH
No 497
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.30 E-value=1.3e+02 Score=22.15 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
...|+.+.+.+++++....|+.|.......+.-+....
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44688899999999999888888777666665555443
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.28 E-value=3.9e+02 Score=27.54 Aligned_cols=86 Identities=8% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHHccCChHHHHHHHHhcccC----------------ChhHHHHHHHHHHhCCChhHHHHHhccCCC--------
Q 006343 75 NALISGYLKVGRCEEAARIFEAMVEK----------------DVVAWGSMVDGYCKKGRVIEAREIFDKMPE-------- 130 (649)
Q Consensus 75 ~~ll~~~~~~~~~~~a~~~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------- 130 (649)
..++.++....++.+-.+.......+ .-++.-.|++.++-.||+..|+++++.+.-
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 34455555556666555554443221 224455677888889999999999887642
Q ss_pred ---CCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006343 131 ---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMR 160 (649)
Q Consensus 131 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 160 (649)
-.+.++--+.-+|.-.+++.+|++.|....
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234466677778888899999999887764
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.05 E-value=4.4e+02 Score=21.90 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcHHHHHHHHH
Q 006343 416 ALNLFRKMKDEGLVPNQIT-FLSVLSACNHVGLVEEGFIYFK 456 (649)
Q Consensus 416 A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 456 (649)
..++|..|...|+-..... |.....-+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666665544332 2333334445555555555553
No 500
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=9.8e+02 Score=25.86 Aligned_cols=91 Identities=10% Similarity=0.047 Sum_probs=52.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCcHHHHHHHHHHhHHh--cCCCCChhHHHHHHHHHHh
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC-NHVGLVEEGFIYFKSMKTL--YNIEPGPEHYACMVDILGR 480 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~l~~ 480 (649)
+..+.+.|.+..|+++-+-+.+....-|......+|.-| .++..++=-+++++..... +..-|+..--.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 455667788888888777777755444566666666655 3556666666666655332 2234555444555555555
Q ss_pred cCC---HHHHHHHHHhC
Q 006343 481 AGS---LAEAIDLINSM 494 (649)
Q Consensus 481 ~g~---~~~A~~~~~~~ 494 (649)
... -..|...+.++
T Consensus 429 ~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQA 445 (665)
T ss_pred cCChhhHHHHHHHHHHH
Confidence 544 33444444443
Done!