Query 006343
Match_columns 649
No_of_seqs 759 out of 4008
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 22:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-43 1.6E-47 383.8 38.9 498 15-546 62-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-40 4.8E-45 364.1 39.6 442 112-562 63-578 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-26 9.1E-31 236.5 38.8 375 139-549 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-25 8.7E-30 229.2 37.6 345 211-562 7-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.6E-26 5.3E-31 242.7 21.2 184 297-481 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.8E-25 6.2E-30 234.7 20.0 200 313-513 7-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 1.6E-23 5.4E-28 220.3 28.5 306 202-543 25-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 8.2E-23 2.8E-27 218.5 32.6 432 103-540 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4.2E-26 210.7 34.3 411 102-555 25-483 (537)
10 2gw1_A Mitochondrial precursor 99.9 3.2E-22 1.1E-26 214.0 28.9 421 134-562 7-477 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.8E-21 9.6E-26 207.9 33.5 430 70-538 24-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 6E-21 2.1E-25 200.5 31.7 361 165-552 23-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-18 4E-23 176.6 30.6 303 236-546 5-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.9E-18 9.9E-23 173.7 32.6 294 264-562 2-334 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 1.1E-15 3.8E-20 169.6 52.1 369 12-417 991-1375(1630)
16 3hym_B Cell division cycle pro 99.8 6.2E-18 2.1E-22 169.2 29.2 282 266-550 23-321 (330)
17 1b89_A Protein (clathrin heavy 99.8 4.2E-19 1.4E-23 177.5 20.1 281 113-419 14-304 (449)
18 1b89_A Protein (clathrin heavy 99.8 5.6E-18 1.9E-22 169.4 27.4 341 18-393 15-370 (449)
19 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.5E-20 167.8 49.4 379 135-555 987-1376(1630)
20 1fch_A Peroxisomal targeting s 99.8 5.9E-18 2E-22 172.4 25.3 257 297-558 65-354 (368)
21 3hym_B Cell division cycle pro 99.8 5.1E-17 1.7E-21 162.5 28.8 262 294-561 20-297 (330)
22 2xm6_A Protein corresponding t 99.8 5.1E-16 1.8E-20 164.7 36.7 350 181-546 56-452 (490)
23 3mkr_A Coatomer subunit epsilo 99.8 1.6E-16 5.4E-21 155.6 29.2 267 245-555 10-286 (291)
24 4eqf_A PEX5-related protein; a 99.8 3.2E-17 1.1E-21 166.8 21.0 260 295-558 64-351 (365)
25 2xm6_A Protein corresponding t 99.8 2.9E-15 9.9E-20 158.9 36.7 348 202-564 38-433 (490)
26 2ooe_A Cleavage stimulation fa 99.8 3.3E-15 1.1E-19 160.1 37.4 403 132-562 12-491 (530)
27 4g1t_A Interferon-induced prot 99.8 3.3E-16 1.1E-20 165.4 29.1 357 203-574 51-470 (472)
28 2ooe_A Cleavage stimulation fa 99.8 3.3E-15 1.1E-19 160.1 36.8 215 313-532 255-495 (530)
29 1fch_A Peroxisomal targeting s 99.7 9.1E-17 3.1E-21 163.6 22.1 289 215-528 37-358 (368)
30 3cv0_A Peroxisome targeting si 99.7 2.1E-16 7E-21 157.9 22.2 257 297-558 22-310 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 4.6E-16 1.6E-20 152.3 22.3 189 365-562 64-263 (291)
32 4eqf_A PEX5-related protein; a 99.7 6.7E-16 2.3E-20 157.1 21.8 229 330-561 64-308 (365)
33 4g1t_A Interferon-induced prot 99.7 4.5E-15 1.5E-19 156.6 26.8 379 133-541 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.8E-20 152.5 18.1 271 234-531 21-317 (327)
35 2pl2_A Hypothetical conserved 99.6 6E-15 2.1E-19 137.8 18.6 193 363-559 2-210 (217)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.6E-21 170.5 6.9 129 102-230 127-263 (1134)
37 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5.1E-19 138.8 18.4 216 298-556 7-229 (258)
38 3uq3_A Heat shock protein STI1 99.6 6.2E-14 2.1E-18 134.5 22.7 185 367-561 6-200 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 5.5E-16 1.9E-20 167.1 8.7 127 364-491 125-259 (1134)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.2E-14 2.8E-18 135.1 21.8 241 307-556 16-268 (275)
41 3u4t_A TPR repeat-containing p 99.6 6.7E-14 2.3E-18 135.6 20.5 242 301-548 8-269 (272)
42 2h6f_A Protein farnesyltransfe 99.6 1.4E-13 4.8E-18 139.3 20.5 245 296-547 97-366 (382)
43 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.9E-17 136.8 24.9 244 77-326 9-281 (452)
44 2q7f_A YRRB protein; TPR, prot 99.5 1.9E-13 6.3E-18 129.9 16.9 175 369-546 60-239 (243)
45 2ho1_A Type 4 fimbrial biogene 99.5 8.6E-13 2.9E-17 126.2 21.3 193 367-561 38-236 (252)
46 3e4b_A ALGK; tetratricopeptide 99.5 6.8E-13 2.3E-17 138.5 22.2 343 175-565 10-389 (452)
47 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.3E-17 122.3 22.0 196 365-562 7-210 (225)
48 1ouv_A Conserved hypothetical 99.5 4E-12 1.4E-16 123.3 26.1 224 295-531 5-253 (273)
49 2pl2_A Hypothetical conserved 99.5 1E-12 3.5E-17 122.6 20.3 192 296-494 5-211 (217)
50 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 6.9E-17 123.6 22.7 205 296-538 37-247 (252)
51 2q7f_A YRRB protein; TPR, prot 99.5 4.8E-13 1.6E-17 127.0 17.2 196 364-562 21-221 (243)
52 3u4t_A TPR repeat-containing p 99.5 4.5E-12 1.5E-16 122.7 24.0 243 267-511 5-266 (272)
53 2vq2_A PILW, putative fimbrial 99.5 3.2E-12 1.1E-16 119.5 22.2 207 295-540 7-222 (225)
54 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.1E-17 131.8 19.8 223 332-560 98-344 (382)
55 1ouv_A Conserved hypothetical 99.5 2.1E-11 7.3E-16 118.0 26.5 223 330-564 5-252 (273)
56 3vtx_A MAMA; tetratricopeptide 99.5 3.9E-12 1.3E-16 115.2 19.2 160 396-558 4-165 (184)
57 3sf4_A G-protein-signaling mod 99.5 9.9E-13 3.4E-17 135.3 16.7 188 368-555 89-328 (406)
58 4a1s_A PINS, partner of inscut 99.4 7.9E-13 2.7E-17 136.6 15.3 258 301-560 53-369 (411)
59 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.4E-12 1.5E-16 122.8 18.9 215 343-562 17-243 (275)
60 4abn_A Tetratricopeptide repea 99.4 1.4E-12 4.9E-17 137.0 16.5 186 365-555 101-313 (474)
61 3ro2_A PINS homolog, G-protein 99.4 2E-12 6.8E-17 129.0 16.9 259 301-561 10-330 (338)
62 3sf4_A G-protein-signaling mod 99.4 9.6E-13 3.3E-17 135.5 14.5 289 233-552 8-365 (406)
63 4e6h_A MRNA 3'-END-processing 99.4 3.9E-10 1.3E-14 121.8 34.0 421 100-544 64-584 (679)
64 3vtx_A MAMA; tetratricopeptide 99.4 5.8E-12 2E-16 114.0 16.9 166 365-534 4-175 (184)
65 2ond_A Cleavage stimulation fa 99.4 3.1E-11 1.1E-15 119.2 23.4 218 313-536 33-277 (308)
66 4gyw_A UDP-N-acetylglucosamine 99.4 7.7E-12 2.6E-16 136.7 18.7 156 396-556 8-167 (723)
67 4a1s_A PINS, partner of inscut 99.4 4.7E-12 1.6E-16 130.7 13.7 265 236-531 50-374 (411)
68 4i17_A Hypothetical protein; T 99.3 5.3E-11 1.8E-15 111.8 19.4 152 396-550 6-169 (228)
69 3ro2_A PINS homolog, G-protein 99.3 1.6E-11 5.6E-16 122.3 15.3 266 236-532 7-335 (338)
70 4e6h_A MRNA 3'-END-processing 99.3 3.5E-09 1.2E-13 114.4 33.8 420 36-480 64-586 (679)
71 3ulq_A Response regulator aspa 99.3 4.1E-11 1.4E-15 122.4 17.6 227 302-528 109-367 (383)
72 3as5_A MAMA; tetratricopeptide 99.3 8.2E-11 2.8E-15 106.0 16.5 152 403-557 14-167 (186)
73 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 104.2 18.0 168 367-537 9-181 (186)
74 3nf1_A KLC 1, kinesin light ch 99.3 8.8E-12 3E-16 123.0 10.5 234 297-556 28-300 (311)
75 2ond_A Cleavage stimulation fa 99.3 3.1E-10 1.1E-14 112.0 21.3 209 348-562 33-269 (308)
76 4abn_A Tetratricopeptide repea 99.3 7.7E-11 2.6E-15 123.7 17.8 176 382-561 84-286 (474)
77 4i17_A Hypothetical protein; T 99.3 1.3E-10 4.6E-15 109.0 17.8 205 329-545 5-225 (228)
78 1hz4_A MALT regulatory protein 99.3 2.7E-09 9.4E-14 108.3 28.7 259 302-560 20-320 (373)
79 3nf1_A KLC 1, kinesin light ch 99.3 9.7E-12 3.3E-16 122.7 9.7 130 399-528 71-223 (311)
80 3q15_A PSP28, response regulat 99.2 2.1E-09 7.1E-14 109.4 23.8 228 301-528 106-364 (378)
81 3ulq_A Response regulator aspa 99.2 1E-09 3.5E-14 111.9 21.1 225 209-460 109-367 (383)
82 4gyw_A UDP-N-acetylglucosamine 99.1 5.8E-10 2E-14 121.9 16.7 162 365-531 8-176 (723)
83 4ga2_A E3 SUMO-protein ligase 99.1 9.7E-11 3.3E-15 101.8 6.7 139 406-549 6-149 (150)
84 3qky_A Outer membrane assembly 99.1 3.7E-09 1.3E-13 101.4 18.2 204 365-609 14-247 (261)
85 1hz4_A MALT regulatory protein 99.1 1.3E-07 4.4E-12 95.8 30.7 163 298-460 137-321 (373)
86 3q15_A PSP28, response regulat 99.1 1.4E-08 4.6E-13 103.4 22.2 128 297-425 223-364 (378)
87 3qou_A Protein YBBN; thioredox 99.1 3.2E-09 1.1E-13 103.3 16.6 176 382-561 102-283 (287)
88 2pzi_A Probable serine/threoni 99.0 2.8E-09 9.4E-14 117.1 17.2 169 377-550 402-584 (681)
89 1qqe_A Vesicular transport pro 99.0 4.8E-09 1.7E-13 102.4 16.9 168 367-534 78-274 (292)
90 3mv2_B Coatomer subunit epsilo 99.0 5.1E-08 1.8E-12 93.5 23.4 173 385-562 85-281 (310)
91 3edt_B KLC 2, kinesin light ch 99.0 8.4E-10 2.9E-14 106.8 11.3 193 367-559 44-277 (283)
92 3qky_A Outer membrane assembly 99.0 6.3E-09 2.2E-13 99.8 16.1 203 329-552 13-250 (261)
93 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.7E-13 86.3 15.7 130 399-531 3-134 (136)
94 4ga2_A E3 SUMO-protein ligase 99.0 1.7E-09 5.7E-14 93.9 10.3 120 439-561 4-128 (150)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.8E-08 9.5E-13 92.8 19.1 179 367-565 5-215 (225)
96 1qqe_A Vesicular transport pro 99.0 7.5E-09 2.6E-13 101.1 15.8 224 314-557 3-263 (292)
97 3edt_B KLC 2, kinesin light ch 99.0 9.7E-09 3.3E-13 99.2 16.3 165 366-530 85-282 (283)
98 3urz_A Uncharacterized protein 99.0 9.3E-09 3.2E-13 94.8 14.6 125 403-532 60-189 (208)
99 2r5s_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 93.5 12.6 74 487-560 93-171 (176)
100 3mv2_B Coatomer subunit epsilo 98.9 5.8E-08 2E-12 93.1 19.0 181 350-538 85-291 (310)
101 2fo7_A Synthetic consensus TPR 98.9 1.6E-08 5.5E-13 85.2 13.5 126 434-561 3-130 (136)
102 2pzi_A Probable serine/threoni 98.9 3.5E-08 1.2E-12 108.4 18.6 191 342-538 402-611 (681)
103 3gyz_A Chaperone protein IPGC; 98.9 8.8E-09 3E-13 89.0 10.6 100 463-562 30-133 (151)
104 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.9E-13 84.9 11.4 87 469-555 14-102 (126)
105 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.7E-11 92.0 28.0 202 314-528 197-412 (493)
106 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.7E-12 86.6 19.1 171 385-564 5-198 (212)
107 2vsy_A XCC0866; transferase, g 98.9 3.2E-08 1.1E-12 106.6 16.3 159 379-541 2-169 (568)
108 2vsy_A XCC0866; transferase, g 98.8 2.5E-08 8.5E-13 107.5 14.8 148 410-561 2-156 (568)
109 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.8E-13 87.7 10.0 98 464-561 16-117 (148)
110 4gco_A Protein STI-1; structur 98.8 3.5E-08 1.2E-12 82.5 11.5 108 433-543 14-124 (126)
111 3dra_A Protein farnesyltransfe 98.8 2.2E-06 7.6E-11 83.0 24.8 225 310-541 47-300 (306)
112 2r5s_A Uncharacterized protein 98.8 7.8E-08 2.7E-12 85.8 13.4 155 368-528 8-172 (176)
113 3dra_A Protein farnesyltransfe 98.8 1.3E-06 4.5E-11 84.6 22.7 212 346-562 48-286 (306)
114 3qou_A Protein YBBN; thioredox 98.8 1.6E-07 5.5E-12 91.2 16.1 131 429-562 114-248 (287)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.9E-07 9.8E-12 90.5 17.9 220 308-555 3-253 (307)
116 3urz_A Uncharacterized protein 98.7 2.5E-07 8.5E-12 85.1 16.1 184 299-508 7-198 (208)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.9E-07 9.9E-12 84.8 15.7 144 370-533 10-154 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.4E-07 8.2E-12 85.4 15.0 123 435-562 9-149 (213)
119 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.7E-07 2.3E-11 83.3 17.7 184 331-535 4-219 (225)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 4.4E-07 1.5E-11 88.5 17.0 163 398-560 76-264 (293)
121 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.1E-12 77.8 12.4 118 432-551 12-131 (131)
122 3u3w_A Transcriptional activat 98.7 1.6E-06 5.5E-11 84.4 20.5 159 402-560 80-264 (293)
123 1na0_A Designed protein CTPR3; 98.7 2.6E-07 9E-12 76.4 12.7 114 433-548 10-125 (125)
124 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.3E-12 80.4 11.5 97 464-560 13-112 (142)
125 2lni_A Stress-induced-phosphop 98.7 2.1E-07 7.3E-12 78.1 12.2 115 432-549 16-133 (133)
126 2c2l_A CHIP, carboxy terminus 98.6 6E-08 2E-12 93.9 9.0 190 366-562 4-198 (281)
127 3rjv_A Putative SEL1 repeat pr 98.6 1.2E-06 4E-11 80.8 17.0 172 350-531 5-199 (212)
128 3upv_A Heat shock protein STI1 98.6 3.9E-07 1.3E-11 76.0 12.5 93 468-560 4-98 (126)
129 1p5q_A FKBP52, FK506-binding p 98.6 1.6E-07 5.4E-12 93.5 11.7 93 468-560 196-291 (336)
130 1a17_A Serine/threonine protei 98.6 3.6E-07 1.2E-11 80.2 12.9 125 434-560 15-143 (166)
131 2uy1_A Cleavage stimulation fa 98.6 2.9E-06 9.8E-11 88.8 21.7 362 23-425 11-412 (493)
132 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.7E-12 82.1 7.9 106 432-540 21-129 (148)
133 2ifu_A Gamma-SNAP; membrane fu 98.6 3.2E-07 1.1E-11 90.1 12.1 195 344-560 4-221 (307)
134 3u3w_A Transcriptional activat 98.6 6.8E-06 2.3E-10 79.9 21.0 158 372-529 81-266 (293)
135 2e2e_A Formate-dependent nitri 98.5 4E-07 1.4E-11 81.2 11.0 116 443-560 21-141 (177)
136 2e2e_A Formate-dependent nitri 98.5 5E-07 1.7E-11 80.5 11.2 129 408-540 21-155 (177)
137 4f3v_A ESX-1 secretion system 98.5 2E-07 6.8E-12 88.2 8.1 136 400-540 105-247 (282)
138 3gyz_A Chaperone protein IPGC; 98.5 4.2E-07 1.4E-11 78.4 9.5 97 434-533 38-137 (151)
139 2kck_A TPR repeat; tetratricop 98.5 8.3E-07 2.9E-11 71.7 10.4 94 468-561 6-104 (112)
140 1hxi_A PEX5, peroxisome target 98.5 3.5E-07 1.2E-11 75.7 8.2 92 469-560 18-111 (121)
141 1elw_A TPR1-domain of HOP; HOP 98.5 1.9E-06 6.4E-11 70.3 12.4 109 434-544 6-116 (118)
142 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.3E-11 76.8 11.8 109 432-543 11-122 (164)
143 2xcb_A PCRH, regulatory protei 98.5 8E-07 2.7E-11 75.9 10.0 107 434-543 20-129 (142)
144 4f3v_A ESX-1 secretion system 98.4 2.4E-06 8.2E-11 80.8 13.9 180 378-562 18-236 (282)
145 2dba_A Smooth muscle cell asso 98.4 2.1E-06 7.3E-11 73.4 12.7 111 433-546 29-145 (148)
146 3dss_A Geranylgeranyl transfer 98.4 2.9E-05 9.9E-10 75.6 21.9 228 308-543 41-318 (331)
147 3upv_A Heat shock protein STI1 98.4 1.2E-06 4E-11 73.0 10.5 109 434-545 6-123 (126)
148 3q49_B STIP1 homology and U bo 98.4 1.5E-06 5E-11 73.5 10.9 93 467-559 8-102 (137)
149 3gw4_A Uncharacterized protein 98.4 4.7E-06 1.6E-10 75.7 14.8 83 378-460 4-94 (203)
150 1wao_1 Serine/threonine protei 98.4 2.9E-06 9.9E-11 88.6 15.0 114 407-524 16-134 (477)
151 3gw4_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 77.0 13.2 116 343-459 4-134 (203)
152 4gcn_A Protein STI-1; structur 98.4 1.2E-06 4.2E-11 73.1 9.5 92 470-561 10-111 (127)
153 3sz7_A HSC70 cochaperone (SGT) 98.4 1.4E-06 4.9E-11 76.4 10.4 94 467-560 10-105 (164)
154 1elw_A TPR1-domain of HOP; HOP 98.4 3E-06 1E-10 69.0 11.5 96 467-562 3-100 (118)
155 2qfc_A PLCR protein; TPR, HTH, 98.4 4.5E-06 1.5E-10 81.2 14.6 161 369-529 78-266 (293)
156 2fbn_A 70 kDa peptidylprolyl i 98.4 2E-06 6.9E-11 78.2 11.3 161 374-555 12-177 (198)
157 3q7a_A Farnesyltransferase alp 98.4 0.00011 3.9E-09 71.7 24.1 222 305-533 63-336 (349)
158 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3E-06 1E-10 88.2 13.5 142 397-560 268-412 (457)
159 3q7a_A Farnesyltransferase alp 98.3 3.8E-05 1.3E-09 75.1 20.2 213 345-562 68-330 (349)
160 3rkv_A Putative peptidylprolyl 98.3 2.3E-06 7.9E-11 74.9 10.3 62 500-561 63-125 (162)
161 1a17_A Serine/threonine protei 98.3 9E-06 3.1E-10 71.0 14.2 128 398-528 14-145 (166)
162 3q49_B STIP1 homology and U bo 98.3 2.5E-06 8.6E-11 72.0 10.2 99 431-532 8-109 (137)
163 2dba_A Smooth muscle cell asso 98.3 5.5E-06 1.9E-10 70.8 12.1 95 467-561 27-126 (148)
164 4gcn_A Protein STI-1; structur 98.3 2E-06 6.8E-11 71.8 8.9 95 438-536 14-118 (127)
165 1na0_A Designed protein CTPR3; 98.3 1.5E-05 5E-10 65.5 14.1 111 398-511 10-122 (125)
166 2vyi_A SGTA protein; chaperone 98.3 1.5E-05 5.1E-10 66.1 13.3 116 397-516 12-130 (131)
167 1hxi_A PEX5, peroxisome target 98.3 3.7E-06 1.3E-10 69.4 9.2 97 435-534 20-119 (121)
168 2hr2_A Hypothetical protein; a 98.2 1.9E-06 6.6E-11 73.5 7.3 71 470-540 59-142 (159)
169 2hr2_A Hypothetical protein; a 98.2 2.6E-06 8.9E-11 72.7 8.1 61 501-561 58-130 (159)
170 1wao_1 Serine/threonine protei 98.2 2E-06 6.7E-11 89.9 9.0 116 440-558 14-134 (477)
171 3dss_A Geranylgeranyl transfer 98.2 0.00013 4.4E-09 71.0 21.2 215 343-562 41-303 (331)
172 2lni_A Stress-induced-phosphop 98.2 1.3E-05 4.6E-10 66.8 12.5 115 396-514 15-132 (133)
173 2c2l_A CHIP, carboxy terminus 98.2 1.1E-05 3.8E-10 77.8 13.4 181 341-531 14-201 (281)
174 3rkv_A Putative peptidylprolyl 98.2 1.8E-06 6.3E-11 75.5 6.8 79 468-546 63-144 (162)
175 2kck_A TPR repeat; tetratricop 98.2 7.5E-06 2.6E-10 65.9 10.0 99 434-534 8-111 (112)
176 1p5q_A FKBP52, FK506-binding p 98.2 1.3E-05 4.5E-10 79.5 13.5 128 396-528 146-293 (336)
177 2xev_A YBGF; tetratricopeptide 98.2 1E-05 3.6E-10 67.3 10.8 83 474-556 8-98 (129)
178 1elr_A TPR2A-domain of HOP; HO 98.2 6.6E-06 2.3E-10 68.4 9.1 108 436-546 8-124 (131)
179 2xev_A YBGF; tetratricopeptide 98.2 2.1E-05 7.2E-10 65.3 11.9 103 439-544 9-120 (129)
180 1elr_A TPR2A-domain of HOP; HO 98.1 1.3E-05 4.3E-10 66.6 10.4 95 468-562 4-107 (131)
181 2fbn_A 70 kDa peptidylprolyl i 98.1 2E-05 6.9E-10 71.4 12.5 92 469-560 39-148 (198)
182 3k9i_A BH0479 protein; putativ 98.1 2.2E-06 7.5E-11 70.3 5.1 94 445-538 3-99 (117)
183 1dce_A Protein (RAB geranylger 98.1 8.6E-05 2.9E-09 79.0 18.7 168 381-552 44-244 (567)
184 2l6j_A TPR repeat-containing p 98.1 6.3E-06 2.2E-10 66.5 7.3 89 467-555 3-99 (111)
185 1ihg_A Cyclophilin 40; ppiase 98.1 5.9E-06 2E-10 83.1 8.5 136 398-555 224-362 (370)
186 3k9i_A BH0479 protein; putativ 98.1 1.5E-06 5.1E-11 71.3 3.4 82 480-561 2-89 (117)
187 4b4t_Q 26S proteasome regulato 98.1 2.9E-05 1E-09 80.0 14.0 162 399-560 57-243 (434)
188 2if4_A ATFKBP42; FKBP-like, al 98.1 8E-06 2.8E-10 81.1 8.7 144 397-560 179-325 (338)
189 3ro3_A PINS homolog, G-protein 98.0 1.1E-05 3.7E-10 69.9 7.8 131 399-557 11-152 (164)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.4E-10 79.0 9.6 152 366-535 179-334 (338)
191 1na3_A Designed protein CTPR2; 98.0 2.8E-05 9.4E-10 59.9 8.7 81 468-548 9-91 (91)
192 3ro3_A PINS homolog, G-protein 98.0 2.2E-05 7.5E-10 67.9 9.0 95 366-460 9-117 (164)
193 4b4t_Q 26S proteasome regulato 97.9 0.00032 1.1E-08 72.1 18.5 24 303-326 11-34 (434)
194 3ma5_A Tetratricopeptide repea 97.9 3.9E-05 1.3E-09 60.6 8.1 64 498-561 5-69 (100)
195 1ihg_A Cyclophilin 40; ppiase 97.9 6.2E-05 2.1E-09 75.6 10.9 62 500-561 273-335 (370)
196 3n71_A Histone lysine methyltr 97.9 4.5E-05 1.5E-09 79.1 10.0 123 442-564 319-465 (490)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 6.9E-05 2.4E-09 77.8 11.3 95 468-562 268-379 (457)
198 1zu2_A Mitochondrial import re 97.8 2.1E-05 7.2E-10 66.9 5.1 88 446-536 16-127 (158)
199 1zu2_A Mitochondrial import re 97.7 1.6E-05 5.5E-10 67.6 3.8 83 479-561 13-119 (158)
200 2kat_A Uncharacterized protein 97.7 8E-05 2.7E-09 60.5 7.0 73 487-559 4-78 (115)
201 3lvg_A Clathrin heavy chain 1; 97.6 6.9E-05 2.4E-09 74.4 5.7 401 6-454 54-534 (624)
202 3bee_A Putative YFRE protein; 97.6 0.00029 9.9E-09 54.5 8.2 68 497-564 3-73 (93)
203 3n71_A Histone lysine methyltr 97.5 8.6E-05 2.9E-09 77.0 6.2 113 477-608 318-449 (490)
204 2l6j_A TPR repeat-containing p 97.5 9.2E-05 3.1E-09 59.4 5.1 94 397-494 4-104 (111)
205 1klx_A Cysteine rich protein B 97.5 0.00041 1.4E-08 58.4 9.2 111 411-530 9-127 (138)
206 3qwp_A SET and MYND domain-con 97.5 0.00014 4.8E-09 74.3 7.4 116 475-609 294-428 (429)
207 2kat_A Uncharacterized protein 97.5 0.00026 8.8E-09 57.4 7.7 81 450-533 3-86 (115)
208 1dce_A Protein (RAB geranylger 97.5 0.0018 6E-08 68.8 15.6 147 410-561 42-220 (567)
209 1klx_A Cysteine rich protein B 97.4 0.0012 4.2E-08 55.4 10.5 113 445-565 8-128 (138)
210 3ly7_A Transcriptional activat 97.4 0.0013 4.4E-08 64.2 11.8 65 497-562 274-339 (372)
211 3qww_A SET and MYND domain-con 97.3 0.00019 6.6E-09 73.1 5.0 102 481-601 311-431 (433)
212 2kc7_A BFR218_protein; tetratr 97.2 0.0015 5.1E-08 50.9 8.7 64 474-537 6-72 (99)
213 3ly7_A Transcriptional activat 97.1 0.017 5.7E-07 56.5 16.4 146 394-542 191-351 (372)
214 1na3_A Designed protein CTPR2; 97.1 0.0039 1.4E-07 47.3 10.0 79 398-480 10-89 (91)
215 3ma5_A Tetratricopeptide repea 97.1 0.0024 8E-08 50.1 8.6 64 396-460 6-69 (100)
216 2kc7_A BFR218_protein; tetratr 97.0 0.0021 7.2E-08 50.0 7.6 56 506-561 6-63 (99)
217 3qww_A SET and MYND domain-con 96.9 0.0025 8.4E-08 64.9 9.4 94 445-538 311-425 (433)
218 3mkq_A Coatomer beta'-subunit; 96.9 0.059 2E-06 60.2 21.3 151 212-389 608-759 (814)
219 3qwp_A SET and MYND domain-con 96.9 0.0044 1.5E-07 63.1 10.6 100 441-540 296-416 (429)
220 3lvg_A Clathrin heavy chain 1; 96.6 0.00045 1.5E-08 68.7 1.0 205 101-317 53-325 (624)
221 3mkq_A Coatomer beta'-subunit; 96.5 0.075 2.5E-06 59.3 18.6 145 75-262 633-777 (814)
222 3bee_A Putative YFRE protein; 96.4 0.023 7.9E-07 43.5 9.3 75 465-540 3-82 (93)
223 2v5f_A Prolyl 4-hydroxylase su 96.4 0.012 4.2E-07 46.3 7.9 74 468-541 5-87 (104)
224 1pc2_A Mitochondria fission pr 96.2 0.017 5.9E-07 48.4 8.1 89 446-536 12-107 (152)
225 1pc2_A Mitochondria fission pr 95.9 0.021 7.2E-07 47.9 7.3 86 413-501 14-105 (152)
226 3u64_A Protein TP_0956; tetrat 95.8 0.023 7.8E-07 53.2 7.9 86 485-570 180-276 (301)
227 3mkq_B Coatomer subunit alpha; 95.2 1.2 4.1E-05 38.3 15.9 130 373-526 12-141 (177)
228 3mkq_B Coatomer subunit alpha; 95.2 0.98 3.4E-05 38.8 15.2 103 274-393 14-116 (177)
229 3u64_A Protein TP_0956; tetrat 94.4 0.097 3.3E-06 49.0 7.5 81 449-532 180-272 (301)
230 1wy6_A Hypothetical protein ST 94.2 1.8 6.2E-05 34.9 14.7 139 409-566 19-157 (172)
231 4gns_B Protein CSD3, chitin bi 94.2 0.12 4E-06 55.9 8.7 53 508-560 345-397 (754)
232 1qsa_A Protein (soluble lytic 94.1 7 0.00024 41.4 30.5 122 411-540 228-355 (618)
233 1nzn_A CGI-135 protein, fissio 93.7 0.31 1.1E-05 39.2 8.3 99 439-539 8-113 (126)
234 1nzn_A CGI-135 protein, fissio 93.6 0.56 1.9E-05 37.7 9.6 89 409-500 13-107 (126)
235 2v5f_A Prolyl 4-hydroxylase su 93.3 0.39 1.3E-05 37.4 8.4 62 399-460 7-74 (104)
236 4ady_A RPN2, 26S proteasome re 93.0 13 0.00044 41.1 29.4 253 242-503 382-664 (963)
237 4b4t_P 26S proteasome regulato 91.6 4.2 0.00014 41.3 15.6 157 238-395 141-324 (445)
238 4h7y_A Dual specificity protei 91.4 0.9 3.1E-05 37.6 8.2 54 482-535 74-129 (161)
239 2wpv_A GET4, UPF0363 protein Y 90.8 11 0.00039 35.7 21.5 181 244-461 23-217 (312)
240 4h7y_A Dual specificity protei 90.4 2.5 8.4E-05 35.0 9.9 100 393-495 9-121 (161)
241 3ltm_A Alpha-REP4; protein eng 90.4 9 0.00031 33.8 16.8 31 394-425 154-184 (211)
242 3ffl_A Anaphase-promoting comp 90.3 1.7 5.7E-05 36.7 9.1 113 370-496 24-150 (167)
243 1wy6_A Hypothetical protein ST 90.1 6.5 0.00022 31.8 12.8 81 378-460 73-153 (172)
244 3ltj_A Alpharep-4; protein eng 90.1 9.1 0.00031 33.5 17.6 52 229-280 85-136 (201)
245 3lpz_A GET4 (YOR164C homolog); 89.9 14 0.00048 35.3 22.8 165 270-460 40-215 (336)
246 1y8m_A FIS1; mitochondria, unk 89.6 5.2 0.00018 32.7 11.2 71 465-535 36-112 (144)
247 1zbp_A Hypothetical protein VP 89.2 3.3 0.00011 38.1 10.9 125 406-536 6-136 (273)
248 3ltm_A Alpha-REP4; protein eng 88.7 12 0.00041 33.0 18.7 109 202-310 63-171 (211)
249 4b4t_P 26S proteasome regulato 88.0 24 0.00082 35.6 21.8 184 310-494 30-244 (445)
250 3o48_A Mitochondria fission 1 88.0 1.9 6.4E-05 34.8 7.5 72 465-536 37-114 (134)
251 2p58_C Putative type III secre 87.4 7.2 0.00025 29.4 9.6 58 274-334 49-106 (116)
252 1y8m_A FIS1; mitochondria, unk 87.2 7.8 0.00027 31.7 10.8 59 498-556 37-99 (144)
253 3txn_A 26S proteasome regulato 86.9 20 0.00069 35.3 15.9 57 403-459 105-166 (394)
254 2uwj_G Type III export protein 86.7 6.9 0.00024 29.5 9.1 58 274-334 48-105 (115)
255 2ff4_A Probable regulatory pro 86.1 5 0.00017 39.9 11.3 70 401-471 175-248 (388)
256 2ff4_A Probable regulatory pro 85.2 7 0.00024 38.8 11.9 67 503-569 174-245 (388)
257 2wpv_A GET4, UPF0363 protein Y 85.2 26 0.00089 33.2 19.0 138 105-253 36-187 (312)
258 1v54_E Cytochrome C oxidase po 84.9 4.6 0.00016 30.6 7.5 64 412-477 25-88 (109)
259 1oyz_A Hypothetical protein YI 83.8 27 0.00093 32.3 20.7 83 200-282 139-223 (280)
260 3lpz_A GET4 (YOR164C homolog); 83.7 31 0.0011 32.9 21.8 133 105-248 38-181 (336)
261 3o48_A Mitochondria fission 1 83.1 7 0.00024 31.5 8.5 84 415-501 21-112 (134)
262 3txn_A 26S proteasome regulato 83.0 38 0.0013 33.4 20.3 59 301-359 104-167 (394)
263 4gns_B Protein CSD3, chitin bi 83.0 11 0.00038 40.7 12.8 51 442-495 347-398 (754)
264 3ltj_A Alpharep-4; protein eng 81.6 26 0.00088 30.4 19.2 142 201-346 26-167 (201)
265 3ffl_A Anaphase-promoting comp 81.4 9.7 0.00033 32.1 9.2 57 404-460 27-91 (167)
266 2uwj_G Type III export protein 81.2 15 0.0005 27.8 8.9 86 347-437 22-107 (115)
267 1v54_E Cytochrome C oxidase po 81.2 7.5 0.00026 29.5 7.4 62 149-211 26-87 (109)
268 2p58_C Putative type III secre 81.2 16 0.00053 27.7 9.4 86 347-437 23-108 (116)
269 4fhn_B Nucleoporin NUP120; pro 80.7 20 0.00069 41.3 14.9 167 267-451 814-990 (1139)
270 2y69_E Cytochrome C oxidase su 77.7 9.9 0.00034 30.6 7.5 63 413-477 69-131 (152)
271 4fhn_B Nucleoporin NUP120; pro 74.1 51 0.0017 38.0 15.7 57 470-526 901-964 (1139)
272 4ady_A RPN2, 26S proteasome re 72.9 1.2E+02 0.0041 33.6 35.6 397 119-528 219-657 (963)
273 2y69_E Cytochrome C oxidase su 65.7 29 0.001 27.9 7.7 59 151-210 71-129 (152)
274 1zbp_A Hypothetical protein VP 64.5 61 0.0021 29.8 10.8 111 440-562 5-128 (273)
275 2qx5_A Nucleoporin NIC96; mRNA 63.6 1.6E+02 0.0053 31.3 16.4 84 302-396 300-386 (661)
276 1qsa_A Protein (soluble lytic 61.1 1.7E+02 0.0057 30.8 39.5 436 49-555 17-471 (618)
277 3mv2_A Coatomer subunit alpha; 60.0 60 0.0021 30.7 10.1 41 492-532 197-239 (325)
278 1oyz_A Hypothetical protein YI 59.9 1E+02 0.0036 28.1 21.8 10 519-528 253-262 (280)
279 4b4t_R RPN7, 26S proteasome re 58.8 37 0.0013 34.0 9.4 96 368-463 133-239 (429)
280 4b4t_R RPN7, 26S proteasome re 57.2 42 0.0014 33.6 9.5 96 399-494 133-234 (429)
281 4b4t_S RPN3, 26S proteasome re 51.9 62 0.0021 33.0 9.5 65 468-532 231-302 (523)
282 3esl_A Checkpoint serine/threo 50.1 1E+02 0.0034 26.9 9.2 46 516-561 95-142 (202)
283 2qx5_A Nucleoporin NIC96; mRNA 50.0 2.6E+02 0.0088 29.7 21.9 81 239-322 299-382 (661)
284 3bqo_A Telomeric repeat-bindin 48.9 1.3E+02 0.0045 26.0 13.7 72 484-555 94-172 (211)
285 3eu9_A Huntingtin-interacting 46.4 1.5E+02 0.0051 25.9 11.1 119 5-127 6-131 (240)
286 3eiq_C Programmed cell death p 43.3 86 0.0029 30.3 8.7 231 105-348 57-305 (358)
287 2d2s_A Exocyst complex compone 43.1 70 0.0024 28.8 7.6 86 404-493 25-116 (235)
288 3kea_A K1L; tropism, ANK repea 43.0 1.9E+02 0.0065 26.5 11.2 45 83-127 40-84 (285)
289 1wdy_A 2-5A-dependent ribonucl 42.5 1.4E+02 0.0049 26.8 10.3 25 106-130 6-30 (285)
290 2nsz_A Programmed cell death p 42.2 82 0.0028 25.2 7.2 61 269-329 11-76 (129)
291 4b4t_S RPN3, 26S proteasome re 41.6 69 0.0024 32.7 7.9 60 39-98 232-297 (523)
292 3ygs_P Procaspase 9; apoptosis 39.8 35 0.0012 25.7 4.3 37 116-152 51-87 (97)
293 2r9g_A AAA ATPase, central reg 39.8 1.5E+02 0.0053 25.6 8.6 64 298-362 13-84 (204)
294 2zu6_B Programmed cell death p 35.3 2.8E+02 0.0097 26.0 10.7 28 105-132 6-33 (307)
295 2d2s_A Exocyst complex compone 35.0 1.3E+02 0.0045 27.0 8.1 22 140-161 25-46 (235)
296 2ion_A PDCD4, programmed cell 33.9 76 0.0026 26.3 5.8 60 270-329 14-78 (152)
297 3esl_A Checkpoint serine/threo 33.8 2.4E+02 0.0081 24.5 11.1 54 412-466 94-148 (202)
298 4a1g_A Mitotic checkpoint seri 32.8 2.1E+02 0.0071 23.6 8.4 45 519-563 84-130 (152)
299 3mkr_B Coatomer subunit alpha; 32.6 1.3E+02 0.0046 28.3 7.8 42 491-532 187-230 (320)
300 1wdy_A 2-5A-dependent ribonucl 32.3 2.7E+02 0.0094 24.8 14.7 209 10-227 6-240 (285)
301 1ya0_A SMG-7 transcript varian 32.0 90 0.0031 31.8 7.2 77 470-546 154-232 (497)
302 4gq2_M Nucleoporin NUP120; bet 30.9 2.4E+02 0.0082 31.6 11.1 33 502-534 899-932 (950)
303 2r9g_A AAA ATPase, central reg 30.5 2.7E+02 0.0091 24.2 9.5 44 403-447 17-63 (204)
304 2dl1_A Spartin; SPG20, MIT, st 30.3 1.9E+02 0.0066 22.5 7.0 16 547-562 67-82 (116)
305 3bge_A Predicted ATPase; struc 29.8 1.7E+02 0.006 25.2 7.3 46 300-345 8-56 (201)
306 3ctd_A Putative ATPase, AAA fa 29.4 2.3E+02 0.0077 24.8 8.1 68 295-362 31-106 (213)
307 2wvi_A Mitotic checkpoint seri 29.1 2.5E+02 0.0087 23.4 8.3 81 484-567 46-129 (164)
308 2p1h_A APAF-1, apoptotic prote 28.8 66 0.0022 23.9 4.2 36 114-149 48-83 (94)
309 2nsz_A Programmed cell death p 28.0 2.3E+02 0.0077 22.5 8.3 65 369-433 10-79 (129)
310 1ug3_A EIF4GI, eukaryotic prot 27.5 2.3E+02 0.0079 27.0 9.0 25 207-231 15-39 (339)
311 4gq2_M Nucleoporin NUP120; bet 26.0 6.9E+02 0.023 27.8 13.7 48 333-380 899-950 (950)
312 2bkf_A Zinc-finger protein NBR 25.9 97 0.0033 22.7 4.3 31 573-603 10-40 (87)
313 2ion_A PDCD4, programmed cell 25.9 1.6E+02 0.0055 24.2 6.5 65 369-433 12-81 (152)
314 1wj6_A KIAA0049 protein, RSGI 25.3 1.4E+02 0.0048 22.5 5.2 31 573-603 18-48 (101)
315 3ygs_P Procaspase 9; apoptosis 25.2 71 0.0024 24.0 3.8 34 22-55 52-85 (97)
316 3qye_A TBC1 domain family memb 25.0 4.3E+02 0.015 24.9 10.4 46 155-200 210-255 (331)
317 1k1a_A B-cell lymphoma 3-encod 24.5 3.2E+02 0.011 23.7 9.1 25 143-167 16-40 (241)
318 3jxi_A Vanilloid receptor-rela 24.2 56 0.0019 29.5 3.8 54 141-194 10-72 (260)
319 3ljn_A Hypothetical protein; a 23.7 4E+02 0.014 25.1 10.2 17 212-228 179-195 (364)
320 2fe3_A Peroxide operon regulat 22.5 1.7E+02 0.0059 23.7 6.1 32 413-444 37-68 (145)
321 1k1a_A B-cell lymphoma 3-encod 22.2 3.8E+02 0.013 23.1 12.0 18 109-126 13-30 (241)
322 1ug3_A EIF4GI, eukaryotic prot 22.1 4E+02 0.014 25.3 9.5 9 400-408 275-283 (339)
323 1ya0_A SMG-7 transcript varian 21.3 2.6E+02 0.0091 28.3 8.3 76 434-512 154-232 (497)
324 2xig_A Ferric uptake regulatio 20.8 2.4E+02 0.0081 23.0 6.6 45 403-447 32-76 (150)
325 3bge_A Predicted ATPase; struc 20.8 3.3E+02 0.011 23.5 7.4 45 403-447 10-57 (201)
326 1bd8_A P19INK4D CDK4/6 inhibit 20.5 3.2E+02 0.011 21.6 8.0 18 211-228 106-123 (156)
327 3twe_A Alpha4H; unknown functi 20.4 97 0.0033 16.0 2.4 17 593-609 3-19 (27)
328 3bu8_A Telomeric repeat-bindin 20.3 1.4E+02 0.0048 26.2 5.0 50 506-555 120-169 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-43 Score=383.76 Aligned_cols=498 Identities=8% Similarity=-0.050 Sum_probs=361.7
Q ss_pred HHHhCCCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHH
Q 006343 15 ALINNNCSIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIF 94 (649)
Q Consensus 15 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 94 (649)
.+.+. |.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|....|+..++..++.+|.+.|++++|..+|
T Consensus 62 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 62 NTSTD-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccc-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 35566 78888999999999899999999999999999999999999999877788899999999999999999999999
Q ss_pred Hhc--ccCChhHHHHHHHHHHhCCChhHHHHHhccCCCC-------------------CcccHHHHHHHHHhcCChhHHH
Q 006343 95 EAM--VEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEK-------------------NVVAWTAMVDGYMKVDCFEDGF 153 (649)
Q Consensus 95 ~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~ 153 (649)
+.+ ..+++.+++.++.+|.++|++++|+++|+++... ++.+|+.++.+|.+.|++++|+
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 998 4688999999999999999999999999965433 3779999999999999999999
Q ss_pred HHHHHHHhCCCCCCh-hhHHHHHHHHhccCChH--HHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 006343 154 DLFLSMRRGGMAFNS-ITLTILFEACGRFFRYR--EGVQV-HGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMM 229 (649)
Q Consensus 154 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 229 (649)
++|++|.+.+ |+. ..+..+...+...+..+ .+..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++
T Consensus 221 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 221 ECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999998753 443 33443433332222111 11111 334444444445556666677777778888888888777
Q ss_pred CC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHh
Q 006343 230 SK--RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFV 307 (649)
Q Consensus 230 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 307 (649)
.+ ++..+|+.++.+|.+.|++++|+.+|+++.+. ...+..+|+.++.+|.
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----------------------------DPYNLDVYPLHLASLH 350 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCCTTHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----------------------------CcccHHHHHHHHHHHH
Confidence 76 56777777777777777777777776655310 0123445555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006343 308 NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYR 387 (649)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (649)
+.|+.++|..+|+++.+.. +.+..++..+..+|.+.|++++|..++..+.+..+. +..+++.++.+|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665431 334455555555666666666666666655554332 55677778888888888888888
Q ss_pred HHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhc--
Q 006343 388 IFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLY-- 462 (649)
Q Consensus 388 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 462 (649)
+|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..++..+...|.+.|++++|.++|+.+.+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 887764 3577888888888888888888888888888763 4567888888888888899999999888887632
Q ss_pred -CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 006343 463 -NIEPG--PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 463 -~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (649)
+..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..+|..++.+|...|++++|...++++++++|+++.++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 55777 6789999999999999999999998875 344688999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006343 538 VVLSDLYSV 546 (649)
Q Consensus 538 ~~l~~~~~~ 546 (649)
..|+++|..
T Consensus 588 ~~l~~~~~~ 596 (597)
T 2xpi_A 588 DLLKRALEE 596 (597)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999988754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-40 Score=364.09 Aligned_cols=442 Identities=11% Similarity=0.015 Sum_probs=368.6
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 006343 112 YCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVH 191 (649)
Q Consensus 112 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 191 (649)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677777888888888888888888888888888999999998888874 4677788888888888888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------------ChhhHHHHHHHHHhcCCHHH
Q 006343 192 GLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKR-------------------DAVSWNSLISGYVHNGEIEE 252 (649)
Q Consensus 192 ~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 252 (649)
..+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 877543 577888888999999999999999999854433 37788999999999999999
Q ss_pred HHHHHhhCCCCC---hhHH--------------------------------------HHHHHHHHcCCChHHHHHHHhhC
Q 006343 253 AYRLFERMPGKD---FVSW--------------------------------------TTMITGFSSKGNLEKSIELFNMM 291 (649)
Q Consensus 253 A~~~~~~m~~~~---~~~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~~ 291 (649)
|+++|++|.+.+ ...+ +.++.+|.++|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 999998886322 2222 22355677889999999999999
Q ss_pred CC--CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHH
Q 006343 292 PE--KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQ 369 (649)
Q Consensus 292 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (649)
.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+..+ .+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHH
Confidence 88 789999999999999999999999999999865 34677899999999999999999999999987654 378899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG 446 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 446 (649)
+.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 999999999999999999999875 4678899999999999999999999999999864 557889999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC--hhHHHHHHHHHHhcCChh
Q 006343 447 LVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-------FEPP--PGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~ll~~~~~~g~~~ 517 (649)
++++|.++|+.+.+. .+.+..+|.+++.+|.+.|++++|.++++++. ..|+ ..+|..++.+|..+|+++
T Consensus 456 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999873 23468999999999999999999999999873 3677 679999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 518 LAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+|+..++++++++|+++.+|..++++|...|+|++|.+..+.+.+
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999996665544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-26 Score=236.51 Aligned_cols=375 Identities=11% Similarity=0.101 Sum_probs=263.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006343 139 MVDGYMKVDCFEDGFDLFLSMRRGGMAFNS-ITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG 217 (649)
Q Consensus 139 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g 217 (649)
+...+.+.|++++|+..+.++.+. .|+. ..+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345566677777777777776653 2332 333333444455555555555555555432 234445555555555555
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCC--C-
Q 006343 218 FMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPE--K- 294 (649)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~- 294 (649)
++++|...|+++... ...+..++..+..++.+.|++++|...|+++.+ |
T Consensus 82 ~~~~A~~~~~~al~~----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL----------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp CHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHc----------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555555555544310 011223444445555555555555555544432 2
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVS 374 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 374 (649)
+...+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|+++.|...+..+.+.++. +...+..+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 211 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 33455666666666677777777777766642 223456666666677777777777777776666543 5567777888
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHH
Q 006343 375 LYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 451 (649)
.+...|++++|...|++.. +.+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..++...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888664 4567889999999999999999999999999863 33467888899999999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006343 452 FIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMEL 529 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 529 (649)
...|+.+.+. .+++...+..++.++.+.|++++|.+.++++. ..| +..+|..++..+...|++++|+..+++++++
T Consensus 291 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999883 34568899999999999999999999999876 334 5778999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCC
Q 006343 530 EPDSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~ 549 (649)
+|+++.+|..++.++...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.5e-25 Score=229.16 Aligned_cols=345 Identities=13% Similarity=0.125 Sum_probs=279.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHcCCChHHH
Q 006343 211 TMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMP---GKDFVSWTTMITGFSSKGNLEKS 284 (649)
Q Consensus 211 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 284 (649)
..+.+.|++++|.+.+..+.+ .+...+..+...+.+.|++++|...++... ..+..++..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 334455555555555554432 233444555555556666666666555443 23445666677777777777777
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHh
Q 006343 285 IELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ-LTLSSVLSASAATATLNQGSQIHAHVVKM 360 (649)
Q Consensus 285 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (649)
...|+++.+ .+..+|..++.++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777776542 35668999999999999999999999999985 4554 45667777888899999999999999987
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006343 361 NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLS 437 (649)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 437 (649)
.+. +..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++..... +.+..++..
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 242 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHH
Confidence 654 67789999999999999999999999886 4566789999999999999999999999998863 335778888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g 514 (649)
+..++...|++++|...|+.+.+ +.|+ +..|..++.+|.+.|++++|.+.++++. .+++..+|..+...+...|
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999999987 4564 8899999999999999999999999876 4567889999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 515 NLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
++++|+..+++++++.|+++.++..++.+|...|++++|.+..+.+.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999996665544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.6e-26 Score=242.74 Aligned_cols=184 Identities=13% Similarity=0.198 Sum_probs=174.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hhHHHHHHHHHHHhCCCCccc
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT---------LNQGSQIHAHVVKMNMESDVS 367 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 367 (649)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNID----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN 443 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 443 (649)
+|++||.+|+++|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 58999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRA 481 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~ 481 (649)
+.|++++|.++|++|.+ .++.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999998 59999999999999998764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.8e-25 Score=234.66 Aligned_cols=200 Identities=10% Similarity=0.106 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC---------H
Q 006343 313 EEAFRWFIEMLRKDVRPNQ-LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGN---------V 382 (649)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 382 (649)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.+++..|.+.|+.||..+||+|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455667778777776554 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 006343 383 VDAYRIFTNID----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSM 458 (649)
Q Consensus 383 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 458 (649)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhc
Q 006343 459 KTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT---FEPPPGVWGALLGAGRTH 513 (649)
Q Consensus 459 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~~ll~~~~~~ 513 (649)
.+ .|+.||..+|++|+++|++.|+.++|.+++++|. ..|+..+|+.+...+...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 6999999999999999999999999999999996 789999999999988753
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.6e-23 Score=220.26 Aligned_cols=306 Identities=11% Similarity=0.052 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcC
Q 006343 202 DIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSK 278 (649)
Q Consensus 202 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 278 (649)
+...+..+...|.+.|++++|...|+.+.+ .+..+|..+..+|...|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 345555666666666666666666655432 244555555555555555555555555443110
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHH
Q 006343 279 GNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ----LTLSSV------------LSASA 342 (649)
Q Consensus 279 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~ 342 (649)
..+..+|..++..|.+.|++++|+..|+++.+. .|+. ..+..+ ...+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445555555556666666666666665553 2332 222222 33466
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006343 343 ATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNL 419 (649)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (649)
..|+++.|...+..+.+..+. +..++..+..+|.++|++++|...|+++. +.+..+|..++..|...|++++|+..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778888888888877776543 66778888999999999999999998876 46788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHH-HHHH------------HHHhhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhc
Q 006343 420 FRKMKDEGLVPNQIT-FLSV------------LSACNHVGLVEEGFIYFKSMKTLYNIEPG-----PEHYACMVDILGRA 481 (649)
Q Consensus 420 ~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~l~~~ 481 (649)
|+++... .|+... +..+ ..+|.+.|++++|..+|+.+.+ +.|+ ..+|.+++.++.+.
T Consensus 234 ~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 234 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHC
Confidence 9999875 455443 3333 6789999999999999999987 3565 45889999999999
Q ss_pred CCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 006343 482 GSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDL 543 (649)
Q Consensus 482 g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (649)
|++++|.+.++++. .+.+..+|..++.+|...|++++|+..++++++++|+++..+..++.+
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999875 344688999999999999999999999999999999999999999933
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.2e-23 Score=218.54 Aligned_cols=432 Identities=10% Similarity=-0.009 Sum_probs=220.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 103 VAWGSMVDGYCKKGRVIEAREIFDKMPE--KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 103 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
..+..+...|.+.|++++|+..|+++.. |+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3455566666777777777777776653 666667777777777777777777777766542 2234566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHH---HHHHHhcCCHHHH
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK----RDAVSWNSL---ISGYVHNGEIEEA 253 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~A 253 (649)
.|++++|...+..+.+.+. ++......++..+.+......+.+.+..+.. ++...+..- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777776666552 2333333444444433333333332221111 000000000 0000000111111
Q ss_pred HHHHhhCCC---------C-ChhHHHHHHHHHHc---CCChHHHHHHHhhCCC----------------C-ChhhHHHHH
Q 006343 254 YRLFERMPG---------K-DFVSWTTMITGFSS---KGNLEKSIELFNMMPE----------------K-DDVTWTAII 303 (649)
Q Consensus 254 ~~~~~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 303 (649)
...+..... + +...+..+...+.. .|++++|...|+++.+ + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111110 1 12233333333332 5566666665554433 1 233555566
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006343 304 SGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVV 383 (649)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (649)
..+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...+..+.+..+. +..++..+...|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 66666666666666666665532 33445555555666666666666666655554432 3445555666666666666
Q ss_pred HHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 384 DAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 384 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+|...|++.. +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+..
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666665543 2344555556666666666666666666655542 22344555555556666666666666665554
Q ss_pred hcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 461 LYNIEPG----PEHYACMVDILGR---AGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 461 ~~~~~p~----~~~~~~l~~~l~~---~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
...-.|. ...+..++.++.+ .|++++|.+.++++. .+.+..+|..+...+...|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 2111111 2255556666666 666666666665543 222344555555566666666666666666666666
Q ss_pred CCCchHHHH
Q 006343 532 DSATPYVVL 540 (649)
Q Consensus 532 ~~~~~~~~l 540 (649)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 555544444
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=210.71 Aligned_cols=411 Identities=13% Similarity=0.063 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEAC 178 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 178 (649)
...+..+...+.+.|++++|+..|+++.. .+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34556666677777777777777776653 345567777777777777777777777776542 22345555566666
Q ss_pred hccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCHHH
Q 006343 179 GRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKR------DAVSWNSLISGYVHNGEIEE 252 (649)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 252 (649)
...|++++|...+. ..... |+. .+..+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 66666666666664 22211 111 112233344444455566665555431 11122334444555555555
Q ss_pred HHHHHhhCCCCChh---HHHHHHHHHHcC--------CChHHHHHHHhhCCCCC----------hhhHHHHHHHHhcCCC
Q 006343 253 AYRLFERMPGKDFV---SWTTMITGFSSK--------GNLEKSIELFNMMPEKD----------DVTWTAIISGFVNNEQ 311 (649)
Q Consensus 253 A~~~~~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~ 311 (649)
+...+......+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 55555555444332 333333333222 24445555555443311 1123444444445555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 312 YEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTN 391 (649)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 391 (649)
+++|+..|+++.+. .|+...+..+...+...|+++.|...+..+.+..+
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------- 307 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP----------------------------- 307 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-----------------------------
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-----------------------------
Confidence 55555555555442 33334444444444444445555444444444332
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 006343 392 IDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY 471 (649)
Q Consensus 392 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (649)
.+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|..+|+.+.+. .+.+...+
T Consensus 308 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 381 (537)
T 3fp2_A 308 ---EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVP 381 (537)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHH
T ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 234445555555555555555555555554432 222344444444555555555555555555442 11224445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-C---CC----ChhHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCC
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMT-F---EP----PPGVWGALLGAGRTH----------LNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 533 (649)
..++.++.+.|++++|.+.++++. . .+ ....+..+...+... |++++|+..++++++.+|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 555555555555555555554432 0 00 011122223334444 55555555555555555555
Q ss_pred CchHHHHHHHHHhcCCchHHHH
Q 006343 534 ATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
+.++..++.+|...|++++|.+
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHH
Confidence 5555555555555555555555
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-22 Score=213.96 Aligned_cols=421 Identities=10% Similarity=0.004 Sum_probs=322.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006343 134 VAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMY 213 (649)
Q Consensus 134 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y 213 (649)
..|..+...+.+.|++++|+..|+++.... |+..++..+..++...|+++.|.+.+..+++.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456778889999999999999999999865 789999999999999999999999999999876 44567888999999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHH---HHHHHHcCCChHH
Q 006343 214 GRLGFMDEANKVFSMMSK---RDAVSWNSLISGYVHNGEIEEAYRLFERMPGK----DFVSWTT---MITGFSSKGNLEK 283 (649)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~---li~~~~~~g~~~~ 283 (649)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+... +...... .............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999987753 34445555555555544444444444222110 0000000 0001111111122
Q ss_pred HHHHHhhCCC---------C-ChhhHHHHHHHHhc---CCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHHH
Q 006343 284 SIELFNMMPE---------K-DDVTWTAIISGFVN---NEQYEEAFRWFIEMLR-----KDVRP--------NQLTLSSV 337 (649)
Q Consensus 284 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 337 (649)
+...+..... + +...+......+.. .|++++|+.+|+++.+ ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2222222211 1 24455555555554 8999999999999988 32122 24567778
Q ss_pred HHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHH
Q 006343 338 LSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGE 414 (649)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 414 (649)
...+...|+++.|...+..+.+..+. ..++..+...|...|++++|...|+.+. +.+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999998766 8888999999999999999999999876 356788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 415 EALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
+|+..|++..+.. +.+..++..+...+...|++++|..+|+.+.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999864 345678888899999999999999999999873 2335788999999999999999999999876
Q ss_pred C----CCCC----hhHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 495 T----FEPP----PGVWGALLGAGRT---HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 495 ~----~~~~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
. ..++ ...|..++..+.. .|+++.|+..++++++.+|+++.++..++.+|...|++++|.+..+...+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4 2222 3388999999999 99999999999999999999999999999999999999999995554443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.8e-21 Score=207.94 Aligned_cols=430 Identities=12% Similarity=0.034 Sum_probs=287.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHH
Q 006343 70 DSVCSNALISGYLKVGRCEEAARIFEAMVE---KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE---KNVVAWTAMVDGY 143 (649)
Q Consensus 70 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 143 (649)
....+..+...+.+.|++++|...|++++. .++.++..+..+|.+.|++++|++.|+++.+ .+..+|..+...+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 345677888899999999999999999874 4678899999999999999999999999764 4567899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHH
Q 006343 144 MKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFG--FDYDIILGNSIITMYGRLGFMDE 221 (649)
Q Consensus 144 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~y~~~g~~~~ 221 (649)
.+.|++++|+..|+.+ .. .|+.. ...+..+...+....+...+..++... ..+........+..|....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999643 22 23221 112333444455567888888876542 11112223445566777888888
Q ss_pred HHHHHhhCCCCChh---hHHHHHHHHHhc--------CCHHHHHHHHhhCCCCCh----------hHHHHHHHHHHcCCC
Q 006343 222 ANKVFSMMSKRDAV---SWNSLISGYVHN--------GEIEEAYRLFERMPGKDF----------VSWTTMITGFSSKGN 280 (649)
Q Consensus 222 A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~----------~~~~~li~~~~~~g~ 280 (649)
+...+......+.. .+..+...+... |++++|+.+|+++.+.++ .++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 88888777765443 344444333322 488999999998875332 246677788999999
Q ss_pred hHHHHHHHhhCCC--CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 006343 281 LEKSIELFNMMPE--KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVV 358 (649)
Q Consensus 281 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (649)
+++|...|+++.+ |+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998764 557789999999999999999999999998853 3345566666666666666666666666666
Q ss_pred HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006343 359 KMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSV 438 (649)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 438 (649)
+..+. +...|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 338 ~~~~~--------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 384 (537)
T 3fp2_A 338 SLNPE--------------------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF 384 (537)
T ss_dssp HHCTT--------------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 54432 23344445555555555555555555555542 2234455555
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCChhH
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEP----GPEHYACMVDILGRA----------GSLAEAIDLINSMT--FEPPPGV 502 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~l~~~----------g~~~~A~~~~~~~~--~~~~~~~ 502 (649)
...+...|++++|...|+.+.+...-.+ ....+..+..++.+. |++++|...++++. .+.+..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 5555566666666666655544211111 122233445566666 88888888887764 3344677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
|..+...+...|++++|...+++++++.|+++....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 888888888888999999999999998886665543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=6e-21 Score=200.48 Aligned_cols=361 Identities=9% Similarity=0.000 Sum_probs=265.2
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHH
Q 006343 165 AFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK---RDAVSWNSLI 241 (649)
Q Consensus 165 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 241 (649)
+.+...+..+...+...|+++.|..++..+++.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456788888899999999999999999999864 44688899999999999999999999998764 4677889999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh------hHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHH
Q 006343 242 SGYVHNGEIEEAYRLFERMPGKDF------VSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEA 315 (649)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (649)
..|...|++++|...|+++...++ ..+..++..+... .+..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 999999999999999998865333 4555554442211 223344556667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 006343 316 FRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-- 393 (649)
Q Consensus 316 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 393 (649)
+..|+++.+.. +.+..++..+..++...|++++|...+..+.+..+. ++.++..+..+|.+.|++++|...|+++.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777642 335556667777777777777777777777665433 56677777778888888888888877765
Q ss_pred -CCChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhhccCcHHHHHHHH
Q 006343 394 -ERNIVSYNSM------------ISGFAQNGLGEEALNLFRKMKDEGLVPN-----QITFLSVLSACNHVGLVEEGFIYF 455 (649)
Q Consensus 394 -~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~ 455 (649)
+.+...+..+ +..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|..++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2344444444 78888899999999999999885 455 346777788888999999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHH------------HHhcC-----C
Q 006343 456 KSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGA------------GRTHL-----N 515 (649)
Q Consensus 456 ~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~------------~~~~g-----~ 515 (649)
+.+... .| +...|..++.+|...|++++|.+.++++. ..|+ ..++..+..+ |...| +
T Consensus 319 ~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 319 SEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 988773 45 58888999999999999999999998764 4454 5566666633 33334 6
Q ss_pred hhHHHHHHHH-HhccCCCCCc----------hHHHHHHHHHhcCCchH
Q 006343 516 LDLAKLAAQH-LMELEPDSAT----------PYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 516 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 552 (649)
.+++.+.+++ +++..|++.. .+..+..+|...|+.+.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6788888886 7888886533 34455566666555444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.2e-18 Score=176.63 Aligned_cols=303 Identities=12% Similarity=0.075 Sum_probs=207.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcC
Q 006343 236 SWNSLISGYVHNGEIEEAYRLFERMP---GKDFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNN 309 (649)
Q Consensus 236 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 309 (649)
.|..+...+...|++++|+..|+++. ..+..++..+...|...|++++|...|+++.+ .+...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 34444444445555555555544443 12334455555555555555555555554432 2445667777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCC---C-HHHHHHH------------HHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHH
Q 006343 310 EQYEEAFRWFIEMLRKDVRP---N-QLTLSSV------------LSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLV 373 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 373 (649)
|++++|+..|+++.+. .| + ...+..+ ...+...|+++.|...+..+.+..+. ++.++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 7777777777777664 34 2 2222222 35667778888888888877776553 566777888
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH------------H
Q 006343 374 SLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-ITFL------------S 437 (649)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~------------~ 437 (649)
..|.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++..+. .|+. ..+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 356678888888888888888888888888875 3332 2222 2
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPG-P----EHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAG 510 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~ 510 (649)
+...+...|++++|...++.+.+. .|+ . ..+..++.++...|++++|.+.+++.. .+.+..+|..++..+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 255677888999999988888873 344 2 335567788888999999998888765 334577888888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
...|++++|...++++++++|+++..+..+..++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 889999999999999999999888888877777654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.9e-18 Score=173.72 Aligned_cols=294 Identities=12% Similarity=0.076 Sum_probs=246.9
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006343 264 DFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSA 340 (649)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 340 (649)
|+..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677888999999999999999998764 467799999999999999999999999999853 3356788888999
Q ss_pred HHccCChhHHHHHHHHHHHhCCC--CcccHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChHHHHHH
Q 006343 341 SAATATLNQGSQIHAHVVKMNME--SDVSIQNSL------------VSLYSKCGNVVDAYRIFTNID---ERNIVSYNSM 403 (649)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 403 (649)
+...|++++|...+..+.+..+. .+...+..+ ...+...|++++|...|+++. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999887651 244445444 578899999999999999876 4577889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH----------
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYA---------- 472 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~---------- 472 (649)
...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+...+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHH
Confidence 999999999999999999999863 556778888999999999999999999999873 454 33332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhCC-CCCC-hh----HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 473 --CMVDILGRAGSLAEAIDLINSMT-FEPP-PG----VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 473 --~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
.++..+.+.|++++|.+.++++. ..|+ .. .+..+...+...|+++.|+..++++++.+|+++..+..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33777999999999999999865 3344 32 3455778889999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 006343 545 SVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~ 562 (649)
...|++++|.+..+...+
T Consensus 317 ~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999996665544
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.1e-15 Score=169.63 Aligned_cols=369 Identities=10% Similarity=0.132 Sum_probs=206.0
Q ss_pred HHHHHHhCCCChHHHHHHHhhCCC-CC-----cchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccC
Q 006343 12 MITALINNNCSIYEAFEIFATMPM-RN-----AVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVG 85 (649)
Q Consensus 12 li~~~~~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 85 (649)
.+..|... |.+.+|..+++++.- ++ ....+.++.+..+. +..+..+...+... .....+...|...|
T Consensus 991 ~vKaf~~a-glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 991 TVKAFMTA-DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----ccHHHHHHHHHhCC
Confidence 45566666 777777777776542 11 13344454444433 22333333333221 11233455566677
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 006343 86 RCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMA 165 (649)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 165 (649)
.+++|..+|++.. ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|+..|.+.
T Consensus 1064 lyEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 7777777777653 1111122222 25666777777776653 3445777777777777777777777543
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006343 166 FNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYV 245 (649)
Q Consensus 166 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 245 (649)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++..|++.+++++..... ..++...|..+...|.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 355666677777777777777777777666654 33333345777777777776544332 3445556666777777
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 006343 246 HNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRK 325 (649)
Q Consensus 246 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (649)
..|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1207 ~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~---- 1275 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH---- 1275 (1630)
T ss_pred hcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh----
Confidence 777777777777764 46777777777777777777777666 3345566666666666655555544332
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc--CCHHHHHHHHHhcCC--------C
Q 006343 326 DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC--GNVVDAYRIFTNIDE--------R 395 (649)
Q Consensus 326 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~ 395 (649)
+..+...+..++..|.+.|.++++..+++...... +.....|+-|...|++. +++.++.+.|..-.. .
T Consensus 1276 -Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e 1353 (1630)
T 1xi4_A 1276 -IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 1353 (1630)
T ss_pred -hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH
Confidence 22233344455555556666666666655554433 22334444444444442 334444444443221 2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEAL 417 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~ 417 (649)
+...|.-++-.|.+.|+++.|+
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHH
Confidence 3345555555555555555555
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.2e-18 Score=169.21 Aligned_cols=282 Identities=9% Similarity=0.005 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006343 266 VSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASA 342 (649)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 342 (649)
..+..++..+...|++++|..+|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 3444444445555555555555554432 234455556666667777777777777776642 224455666666666
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHH
Q 006343 343 ATA-TLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALN 418 (649)
Q Consensus 343 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 418 (649)
..| +.+.|...+..+.+..+. +...+..+..+|...|++++|...|++.. +.+...+..+...|...|++++|+.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH
Confidence 777 677777777776665533 56667778888888888888888888765 3456677778888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 419 LFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYN-------IEPGPEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 419 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
.|++..+.. +.+...+..+...+...|++++|..+|+.+.+... .+.....+..++.+|.+.|++++|.+.+
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 988888753 44567777888888888999999998888876421 1334678889999999999999999999
Q ss_pred HhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCc
Q 006343 492 NSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY-SVIGKK 550 (649)
Q Consensus 492 ~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 550 (649)
+++. .+.+..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8765 3445778889999999999999999999999999999999999999988 455554
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=4.2e-19 Score=177.51 Aligned_cols=281 Identities=10% Similarity=0.167 Sum_probs=131.4
Q ss_pred HhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 006343 113 CKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHG 192 (649)
Q Consensus 113 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 192 (649)
-+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36677888888888886554 7888888888888888888888652 577788888888888888888888777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH
Q 006343 193 LVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMI 272 (649)
Q Consensus 193 ~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 272 (649)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77664 44577788888999999999888877753 67778999999999999999999999877 4788889
Q ss_pred HHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 006343 273 TGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQ 352 (649)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 352 (649)
.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|+. ...++..|.+.|.++++..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999888 378889999999999999988855544321 33433 4567788888999999988
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhc--CCHHHHHHHHHhcC---C-----CChHHHHHHHHHHHhcCCHHHHHHH
Q 006343 353 IHAHVVKMNMESDVSIQNSLVSLYSKC--GNVVDAYRIFTNID---E-----RNIVSYNSMISGFAQNGLGEEALNL 419 (649)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~~ 419 (649)
+++...... +....+|+-|.-+|+|- +++.+..+.|..-. + .+...|.-+.-.|...++++.|...
T Consensus 229 lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 229 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 888877665 44567778887777764 56777777776443 1 3566899999999999999988873
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5.6e-18 Score=169.42 Aligned_cols=341 Identities=14% Similarity=0.148 Sum_probs=177.6
Q ss_pred hCCCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCChHHHHHHHHhc
Q 006343 18 NNNCSIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGRCEEAARIFEAM 97 (649)
Q Consensus 18 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 97 (649)
+. |++++|...+++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..
T Consensus 15 ~~-~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HI-GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc-cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55 89999999999997664 9999999999999999999999764 67779999999999999999999988877
Q ss_pred cc--CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006343 98 VE--KDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILF 175 (649)
Q Consensus 98 ~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 175 (649)
.+ +++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..+.
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 54 4567899999999999999999988864 78889999999999999999999999987 4799999
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006343 176 EACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYR 255 (649)
Q Consensus 176 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 255 (649)
.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999988 378999999999999999999988877765 455555679999999999999999
Q ss_pred HHhhCCCC---ChhHHHHHHHHHHc--CCChHHHHHHHhhCCC--------CChhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 006343 256 LFERMPGK---DFVSWTTMITGFSS--KGNLEKSIELFNMMPE--------KDDVTWTAIISGFVNNEQYEEAFRWFIEM 322 (649)
Q Consensus 256 ~~~~m~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (649)
+++..... ....|+.|.-+|++ -+++.+..+.|..-.. .+...|..+...|.+.++++.|.. .|
T Consensus 229 lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm 305 (449)
T 1b89_A 229 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TM 305 (449)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HH
Confidence 99988754 34577777777776 4577788888875543 256789999999999999999976 45
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006343 323 LRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID 393 (649)
Q Consensus 323 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (649)
.+. +|+...-..+.....+..+.+.--+.....+.. .|...+-|+.++...=+...+.++|+...
T Consensus 306 ~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 306 MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 553 344333444444555566655544444433332 34456677777766667777777776654
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.9e-15 Score=167.82 Aligned_cols=379 Identities=13% Similarity=0.139 Sum_probs=295.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 006343 135 AWTAMVDGYMKVDCFEDGFDLFLSMRRGGM--AFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITM 212 (649)
Q Consensus 135 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 212 (649)
--...+.+|...|.+.+|++++++....+- .-+...-+.++.+..+. +...+.++....-+ .....+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHH
Confidence 345677889999999999999999984421 11223334455544444 55555555544431 124457788
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCC
Q 006343 213 YGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMP 292 (649)
Q Consensus 213 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (649)
+...|.+++|..+|++... .....+.++ -..|++++|.++.++. .++.+|..+..++.+.|++++|...|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8899999999999999752 222223332 2788999999999977 45778999999999999999999999775
Q ss_pred CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHH
Q 006343 293 EKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSL 372 (649)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 372 (649)
.|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence 677889999999999999999999999888754 44333445888899998888644442 2 2344566679
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGF 452 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 452 (649)
.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|.+..|.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999985 58999999999999999999999986 45689999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHh--cCChhHHHHHHHHHhc
Q 006343 453 IYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRT--HLNLDLAKLAAQHLME 528 (649)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~ 528 (649)
..... +.-+++.+..++..|.+.|.+++|..+++... .+| ....|.-|..++.+ -++..++.+.|..-+.
T Consensus 1271 ~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1271 MCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87542 44567788899999999999999999998765 333 34577667776664 4678888888888888
Q ss_pred cCC-----CCCchHHHHHHHHHhcCCchHHHH
Q 006343 529 LEP-----DSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 529 ~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
+.| .++..|.-+..+|.+.|+|+.|..
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 877 788889999999999999999985
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.9e-18 Score=172.42 Aligned_cols=257 Identities=9% Similarity=-0.028 Sum_probs=191.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLY 376 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (649)
..|..+...+.+.|++++|+..|+++++.. +.+..++..+..++...|+++.|...+..+.+..+. +..++..+...|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 445566666666666666666666666542 234445555666666666666666666666665433 455666666667
Q ss_pred HhcCCHHHHHHHHHhcCC---CChHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 006343 377 SKCGNVVDAYRIFTNIDE---RNIVSYNS---------------MISGFAQNGLGEEALNLFRKMKDEGLVP-NQITFLS 437 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 437 (649)
...|++++|...|+++.. .+...+.. .+..+...|++++|+..|+++.+..... +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 777777777776666542 12222211 2333448899999999999999864221 4788888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g 514 (649)
+...+...|++++|..+|+.+... .| +...+..++.++.+.|++++|.+.++++. .+.+..+|..+...+...|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999873 45 47899999999999999999999999875 3445778999999999999
Q ss_pred ChhHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCCchHHHHHHH
Q 006343 515 NLDLAKLAAQHLMELEPDS-----------ATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
++++|...+++++++.|++ +..|..++.+|...|++++|..+.+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999999987 7889999999999999999998654
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.1e-17 Score=162.52 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=227.5
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHH
Q 006343 294 KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLV 373 (649)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 373 (649)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..+..++...|+.++|...+..+.+..+. ++.++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888999999999999999999998853 334456666778889999999999999999987654 678889999
Q ss_pred HHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHH
Q 006343 374 SLYSKCG-NVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVE 449 (649)
Q Consensus 374 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 449 (649)
..|...| ++++|...|++.. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 4567789999999999999999999999999864 334667777888999999999
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCChhHHHHHHHHHHhcCChh
Q 006343 450 EGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F----------EPPPGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 450 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~----------~~~~~~~~~ll~~~~~~g~~~ 517 (649)
+|..+|+.+.+ ..| +...+..++.++.+.|++++|.+.++++. . +....+|..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999987 345 58889999999999999999999998764 1 334678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 518 LAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
+|+..+++++++.|+++..+..++.+|...|++++|.+..+...
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999665443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=5.1e-16 Score=164.66 Aligned_cols=350 Identities=9% Similarity=-0.003 Sum_probs=250.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHH
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGR----LGFMDEANKVFSMMSK-RDAVSWNSLISGYVH----NGEIE 251 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~ 251 (649)
.++.+.|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344555555555544433 33444445555555 5556666655555433 244555555555555 55666
Q ss_pred HHHHHHhhCCCC-ChhHHHHHHHHHHc----CCChHHHHHHHhhCCC-CChhhHHHHHHHHhc----CCCHHHHHHHHHH
Q 006343 252 EAYRLFERMPGK-DFVSWTTMITGFSS----KGNLEKSIELFNMMPE-KDDVTWTAIISGFVN----NEQYEEAFRWFIE 321 (649)
Q Consensus 252 ~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 321 (649)
+|+..|++..+. +...+..|..+|.. .++.++|...|++..+ .+..++..+...|.. .++.++|++.|++
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 666666655432 44556666666665 6677777777766543 356677777777777 7888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHHhcC
Q 006343 322 MLRKDVRPNQLTLSSVLSASAA----TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK----CGNVVDAYRIFTNID 393 (649)
Q Consensus 322 m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 393 (649)
..+.| +...+..+...+.. .++.++|...+....+.+ ++..+..+..+|.. .++.++|...|++..
T Consensus 213 a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 213 SATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 88754 44555566666654 678888888888877765 45566778888887 899999999998876
Q ss_pred C-CChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHhHHhcCC
Q 006343 394 E-RNIVSYNSMISGFAQN-----GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG---LVEEGFIYFKSMKTLYNI 464 (649)
Q Consensus 394 ~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~ 464 (649)
+ .+...+..+...|... +++++|+.+|++..+.| +...+..+...+...| +.++|+++|+...+.
T Consensus 287 ~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--- 360 (490)
T 2xm6_A 287 EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--- 360 (490)
T ss_dssp TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---
T ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---
Confidence 4 4667788888888887 89999999999998875 3455666666666656 889999999998872
Q ss_pred CCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---C
Q 006343 465 EPGPEHYACMVDILGR----AGSLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELEPD---S 533 (649)
Q Consensus 465 ~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~ 533 (649)
.++..+..|..+|.. .+++++|.+.+++.....++..+..|...+.. .+|.++|...++++.+.+|+ +
T Consensus 361 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 361 -GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 568888899999988 89999999999987644567888889999887 89999999999999999954 6
Q ss_pred CchHHHHHHHHHh
Q 006343 534 ATPYVVLSDLYSV 546 (649)
Q Consensus 534 ~~~~~~l~~~~~~ 546 (649)
+.+...|+.++..
T Consensus 440 ~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 440 ENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTTSCHH
T ss_pred HHHHHHHHhcCHh
Confidence 7777777766554
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.6e-16 Score=155.59 Aligned_cols=267 Identities=8% Similarity=-0.013 Sum_probs=185.3
Q ss_pred HhcCCHHHHHHHHhhCCCCChh----HHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHH
Q 006343 245 VHNGEIEEAYRLFERMPGKDFV----SWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFI 320 (649)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (649)
...|++..|+..+++....++. ....+..+|...|+++.|...++....++..++..+...+...|+.++|++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3445555555555544433221 223344455555555555554444333334445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHH
Q 006343 321 EMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSY 400 (649)
Q Consensus 321 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (649)
++...+..|+ ++.++..+..+|...|++++|.+.|++ +.+...+
T Consensus 90 ~ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~ 133 (291)
T 3mkr_A 90 REMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECM 133 (291)
T ss_dssp HHHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHH
T ss_pred HHHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHH
Confidence 5554433333 344556677888999999999999998 6678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 401 NSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITF---LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
..++..|.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++|..+|+.+.+. .++++..++.++.+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 99999999999999999999999986 4664321 12333444569999999999999984 34568899999999
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 478 LGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDL-AKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
+.+.|++++|.+.++++. ..| ++.+|..++..+...|+.++ +.+.++++++++|+++... .+..+.+.+|++.
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHH
Confidence 999999999999999865 344 57789999999999999865 6789999999999887654 4556666666655
Q ss_pred H
Q 006343 555 R 555 (649)
Q Consensus 555 ~ 555 (649)
.
T Consensus 286 ~ 286 (291)
T 3mkr_A 286 L 286 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3.2e-17 Score=166.84 Aligned_cols=260 Identities=10% Similarity=-0.027 Sum_probs=199.4
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVS 374 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 374 (649)
+...|..+...+.+.|++++|+.+|+++++.. +.+..++..+..++...|++++|...+..+.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34457777777777777777777777777643 335566777777777777777777777777776543 5667777888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 006343 375 LYSKCGNVVDAYRIFTNIDERN-------------IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PNQITFLSVLS 440 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 440 (649)
.|.+.|++++|...|+++...+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888765311 223345578889999999999999999986422 15788889999
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~ 518 (649)
.+...|++++|..+|+.+.+. .+.+...|..++.+|.+.|++++|.+.++++. ..| +..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 23358899999999999999999999999875 344 47889999999999999999
Q ss_pred HHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 519 AKLAAQHLMELEPD------------SATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 519 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999886 36778999999999999999887543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=2.9e-15 Score=158.86 Aligned_cols=348 Identities=12% Similarity=0.051 Sum_probs=292.5
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhHHHHH
Q 006343 202 DIILGNSIITMYGR----LGFMDEANKVFSMMSK-RDAVSWNSLISGYVH----NGEIEEAYRLFERMPGK-DFVSWTTM 271 (649)
Q Consensus 202 ~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~l 271 (649)
+......|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|..+|++..+. +...+..|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677777888887 8999999999987654 577889999999999 99999999999987654 66788888
Q ss_pred HHHHHc----CCChHHHHHHHhhCCCC-ChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006343 272 ITGFSS----KGNLEKSIELFNMMPEK-DDVTWTAIISGFVN----NEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASA 342 (649)
Q Consensus 272 i~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 342 (649)
..+|.. .+++++|...|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+..+...+.
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 899988 88999999999987654 67788889999987 889999999999999875 5667777777777
Q ss_pred c----cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChHHHHHHHHHHHh----
Q 006343 343 A----TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK----CGNVVDAYRIFTNID-ERNIVSYNSMISGFAQ---- 409 (649)
Q Consensus 343 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 409 (649)
. .++.++|...+....+.+ ++..+..+..+|.. .++.++|...|++.. ..+...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 7 899999999999998876 56678888889987 899999999999876 4566788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV-----GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAG-- 482 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g-- 482 (649)
.++.++|+.+|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..+..+|.+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCc
Confidence 899999999999998765 445666666677666 8999999999998872 35677888899988867
Q ss_pred -CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHH
Q 006343 483 -SLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV----IGKKRDG 553 (649)
Q Consensus 483 -~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 553 (649)
+.++|.+++++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|.. .++.++|
T Consensus 345 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 889999999987645678899999999988 899999999999999864 68899999999999 8999999
Q ss_pred HHHHHHHhhCC
Q 006343 554 NRVRMKKKLKR 564 (649)
Q Consensus 554 ~~~~~~~~~~~ 564 (649)
.+..+...+.+
T Consensus 423 ~~~~~~A~~~~ 433 (490)
T 2xm6_A 423 WAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHCC
Confidence 99655555444
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.3e-15 Score=160.06 Aligned_cols=403 Identities=10% Similarity=0.061 Sum_probs=258.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006343 132 NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIIT 211 (649)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 211 (649)
|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|+.+++.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5567888887 47788888888888888864 23345567777777888888888888888887754 56667776665
Q ss_pred HH-HhcCCHHHHHH----HHhhCC------CCChhhHHHHHHHHHh---------cCCHHHHHHHHhhCCC-CCh---hH
Q 006343 212 MY-GRLGFMDEANK----VFSMMS------KRDAVSWNSLISGYVH---------NGEIEEAYRLFERMPG-KDF---VS 267 (649)
Q Consensus 212 ~y-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~ 267 (649)
.. ...|+.+.|.+ +|+... ..+...|...+..... .|++++|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566666554 555431 1345567666665544 5677777777776654 211 12
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHH------HHCC---CCCCH-------
Q 006343 268 WTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEM------LRKD---VRPNQ------- 331 (649)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~------- 331 (649)
|..........|. ..+..++. ...+++..|..++.+. .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2211111000000 00111110 1234455666555542 2211 23331
Q ss_pred -HHHHHHHHHHHcc----CCh----hHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHH
Q 006343 332 -LTLSSVLSASAAT----ATL----NQGSQIHAHVVKMNMESDVSIQNSLVSLYSK-------CGNVV-------DAYRI 388 (649)
Q Consensus 332 -~t~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 388 (649)
..|...+...... ++. ..+..+++++++..+. ++.+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 2333333222211 122 3566677777776433 66777777777775 68876 88888
Q ss_pred HHhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHhHHhc
Q 006343 389 FTNIDE----RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ--ITFLSVLSACNHVGLVEEGFIYFKSMKTLY 462 (649)
Q Consensus 389 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 462 (649)
|++... .+...|..++..+.+.|++++|..+|+++++. .|+. ..|......+.+.|++++|+.+|+...+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-- 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 887652 35678888888888899999999999998884 5553 4677777777888899999999988876
Q ss_pred CCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---
Q 006343 463 NIEPG-PEHYACMVDI-LGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT--- 535 (649)
Q Consensus 463 ~~~p~-~~~~~~l~~~-l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 535 (649)
..|. ...|...+.+ +...|+.++|..+|+... .+.++..|..++......|+.+.|..+++++++..|.++.
T Consensus 385 -~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 385 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 3343 3334333322 336889999999988764 3345778888888888889999999999999988776654
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 536 -PYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 536 -~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.+...+......|+.+.+.++.+.+.+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677777888999888886665554
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.3e-16 Score=165.42 Aligned_cols=357 Identities=12% Similarity=0.028 Sum_probs=202.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC------------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 006343 203 IILGNSIITMYGRLGFMDEANKVFSMMS------------KRDAVSWNSLISGYVHNGEIEEAYRLFERMPG-------- 262 (649)
Q Consensus 203 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 262 (649)
...||.|...|...|+.++|.+.|++.. ....++|+.+...|...|++++|...+++...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4455555566666666666655554431 12344566666666666666666666554421
Q ss_pred ---CChhHHHHHHHHHHc--CCChHHHHHHHhhCCC--C-ChhhHHHHHHH---HhcCCCHHHHHHHHHHHHHCCCCCCH
Q 006343 263 ---KDFVSWTTMITGFSS--KGNLEKSIELFNMMPE--K-DDVTWTAIISG---FVNNEQYEEAFRWFIEMLRKDVRPNQ 331 (649)
Q Consensus 263 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 331 (649)
....++..+..++.+ .+++++|+..|++..+ | +...+..+... +...++.++|++.|++.++.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 112344444444433 3456677777766543 2 34444444433 334566677777777776632 2233
Q ss_pred HHHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHH
Q 006343 332 LTLSSVLSASAA----TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMI 404 (649)
Q Consensus 332 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 404 (649)
..+..+...+.. .++.++|...+..+.+..+. +..++..+...|.+.|++++|...|++.. +.+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 344444333333 34566777777776666544 55566777777777777777777777655 33445565555
Q ss_pred HHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCC
Q 006343 405 SGFAQ-------------------NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIE 465 (649)
Q Consensus 405 ~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 465 (649)
..|.. .+..++|+..|++..+.. +.+..++..+...+...|++++|..+|+...+ +.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KE 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cC
Confidence 54432 233567788888877753 34455677778888889999999999988876 34
Q ss_pred CChh----HHHHHHHH-HHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 466 PGPE----HYACMVDI-LGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 466 p~~~----~~~~l~~~-l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
|+.. .+..+... +...|+.++|++.+++.. +.|+...+... .+.+.+++++.++.+|+++.+|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4422 23333332 346788999998888754 56665443322 344566778888899999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 006343 540 LSDLYSVIGKKRDGNRVRMKKKLKRIRKSPGCSWI 574 (649)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~g~s~i 574 (649)
|+.+|...|++++|.+..+..-+.+-.-....+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999995544434443333334443
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=3.3e-15 Score=160.08 Aligned_cols=215 Identities=9% Similarity=0.043 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChh-------HHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006343 313 EEAFRWFIEMLRKDVRPNQLTLSSVLSASAA-------TATLN-------QGSQIHAHVVKMNMESDVSIQNSLVSLYSK 378 (649)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (649)
.+|+.+|++++... +-+...|......+.. .|+++ .|..+++.+++.-.+.+..++..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 47788888888742 3345566666666654 68876 889999988863223367889999999999
Q ss_pred cCCHHHHHHHHHhcC--CC-Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCcHHHHHH
Q 006343 379 CGNVVDAYRIFTNID--ER-NI-VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA-CNHVGLVEEGFI 453 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~ 453 (649)
.|++++|..+|+++. .| +. ..|...+..+.+.|+.++|..+|++..+.. +.+...+...... +...|++++|..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 999999999999876 23 33 589999999999999999999999998852 2233334333322 335899999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC--hhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 454 YFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F---EPP--PGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 454 ~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
+|+...+. .| ++..|..+++.+.+.|+.++|..++++.. . .|+ ..+|...+.....+|+.+.+..+.+++
T Consensus 413 ~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 413 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999874 35 58899999999999999999999999864 2 232 348988899899999999999999999
Q ss_pred hccCCC
Q 006343 527 MELEPD 532 (649)
Q Consensus 527 ~~~~p~ 532 (649)
.+..|+
T Consensus 490 ~~~~p~ 495 (530)
T 2ooe_A 490 FTAFRE 495 (530)
T ss_dssp HHHTHH
T ss_pred HHHCch
Confidence 999884
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=9.1e-17 Score=163.56 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=173.1
Q ss_pred hcCCHHHHHH-HHhhCCC---C----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHH
Q 006343 215 RLGFMDEANK-VFSMMSK---R----DAVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEK 283 (649)
Q Consensus 215 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 283 (649)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+ .+..++..+...|.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455555555 5553332 1 233455555555555555555555555432 233444455555555555555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHh
Q 006343 284 SIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKM 360 (649)
Q Consensus 284 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (649)
|...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+.......+. ....
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~------~~~~----------- 177 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAE------EGAG----------- 177 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHH------HHhh-----------
Confidence 5555544332 234445555555555555555555555554432 21110000000 0000
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC--CC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006343 361 NMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID--ER---NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITF 435 (649)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 435 (649)
... ....+..+...+ ..|++++|...|+++. .| +..+|..+...|...|++++|+..|+++.... +.+..++
T Consensus 178 ~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 178 GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 000 000011233333 7888899998888775 22 46788888999999999999999999988863 4456788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C-----------hh
Q 006343 436 LSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-P-----------PG 501 (649)
Q Consensus 436 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~-----------~~ 501 (649)
..+...+...|++++|..+|+.+.+. .| +...+..++.+|.+.|++++|.+.++++. ..| + ..
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 88888899999999999999988873 45 47888899999999999999999988764 112 1 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+|..+..++...|+.++|..++++.++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 899999999999999999988886655
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=2.1e-16 Score=157.87 Aligned_cols=257 Identities=11% Similarity=-0.032 Sum_probs=190.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLY 376 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (649)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+..+. +..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345555666666666666666666666532 224445555566666666666666666666665433 455666666777
Q ss_pred HhcCCHHHHHHHHHhcCC---CChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006343 377 SKCGNVVDAYRIFTNIDE---RNIVSYNSM--------------IS-GFAQNGLGEEALNLFRKMKDEGLVPNQITFLSV 438 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 438 (649)
...|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766542 222223222 22 3677889999999999998864 4467788888
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCh
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNL 516 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~ 516 (649)
...+...|++++|..+++.+.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 89999999999999999999873 23358889999999999999999999999865 344577899999999999999
Q ss_pred hHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 517 DLAKLAAQHLMELEPD------------SATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
++|...+++++++.|+ ++..+..++.+|...|++++|..+.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999998 68899999999999999999998543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4.6e-16 Score=152.30 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=158.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNID-----ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVL 439 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 439 (649)
+...+..+...|...|+.++|.+.++++. +.+...+..+...+...|++++|++.+++ +.+...+..+.
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 45566777888888899999999998763 23566788888999999999999999987 46777888889
Q ss_pred HHhhccCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC
Q 006343 440 SACNHVGLVEEGFIYFKSMKTLYNIEPGPEH---YACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL 514 (649)
Q Consensus 440 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g 514 (649)
..+.+.|++++|.+.|+.+.+. .|+... ..+++.++...|++++|..+++++. .+.++..|+.++.++...|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999884 466321 2334566666799999999999876 4567889999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHhh
Q 006343 515 NLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDG-NRVRMKKKL 562 (649)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 562 (649)
++++|+..++++++++|+++.++..++.++...|+++++ .++++.+.+
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 566555543
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.7e-16 Score=157.06 Aligned_cols=229 Identities=10% Similarity=0.001 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHH
Q 006343 330 NQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISG 406 (649)
Q Consensus 330 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 406 (649)
+...+..+...+...|++++|...+..+.+..+. +..++..+..+|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445778888999999999999999999998755 67889999999999999999999999876 4567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLVPNQ-----------ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMV 475 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (649)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+.+.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 3432 2223446788999999999999999998532222588999999
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 006343 476 DILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (649)
.+|.+.|++++|.+.++++. .+.+..+|..++.++...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999875 3456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 006343 554 NRVRMKKK 561 (649)
Q Consensus 554 ~~~~~~~~ 561 (649)
.+..+...
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99554443
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.5e-15 Score=156.61 Aligned_cols=379 Identities=9% Similarity=-0.052 Sum_probs=217.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 006343 133 VVAWTAMVDGYMKVDCFEDGFDLFLSMRRG-----G--MAF-NSITLTILFEACGRFFRYREGVQVHGLVSRFG------ 198 (649)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------ 198 (649)
+..||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...+..+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456899999999999999999999887541 1 123 34578888888888888888888888776531
Q ss_pred CCC-ChhhHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-ChhhHHHHHHH---HHhcCCHHHHHHHHhhCC---CCChh
Q 006343 199 FDY-DIILGNSIITMYGRL--GFMDEANKVFSMMSK--R-DAVSWNSLISG---YVHNGEIEEAYRLFERMP---GKDFV 266 (649)
Q Consensus 199 ~~~-~~~~~~~l~~~y~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~---~~~~~ 266 (649)
..+ ...+++.+..++.+. +++++|...|++..+ | ++..+..+... +...++.++|++.|++.. ..+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 111 234444444444443 467888888877653 3 44455554444 334566666777666543 23444
Q ss_pred HHHHHHHHHHc----CCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006343 267 SWTTMITGFSS----KGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ-LTLSSVL 338 (649)
Q Consensus 267 ~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 338 (649)
++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|+..|++..+. .|+. .++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 55555444433 4566777777776542 35566777777788888888888888777763 4443 3333333
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHH
Q 006343 339 SASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEE 415 (649)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 415 (649)
.++...+.. ..... ...........+..+.|...|+... +.+..+|..+...|...|++++
T Consensus 289 ~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 332211000 00000 0001111112234567777777654 4566788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 006343 416 ALNLFRKMKDEGLVPNQI--TFLSVLS-ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLIN 492 (649)
Q Consensus 416 A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 492 (649)
|+..|++.++....|... .+..+.. ...+.|+.++|+..|+...+ +.|+....... ...+..+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence 999999999865433322 2222222 34578999999999999887 67764332222 233344444
Q ss_pred hCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 493 SMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 493 ~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
... .+.++.+|..|+..+...|++++|+..+++++++.|.+|.+..-++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 3456789999999999999999999999999999998888766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.1e-15 Score=152.50 Aligned_cols=271 Identities=11% Similarity=0.002 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHh
Q 006343 234 AVSWNSLISGYVHNGEIEEAYRLFERMPG---KDFVSWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFV 307 (649)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 307 (649)
...|..+...+...|++++|..+|+++.+ .+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 34566666777777777777777766542 2444555566666666666666666655432 24445555666666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHH-HH-HHHhcCCHHH
Q 006343 308 NNEQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSL-VS-LYSKCGNVVD 384 (649)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~ 384 (649)
..|++++|++.|+++.+. .|+.. .+..+...+ ++......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 666666666666666553 22211 111110000 000000011 22 2556677777
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 006343 385 AYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTL 461 (649)
Q Consensus 385 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 461 (649)
|...++++. +.+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|..+|+.+.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777654 3456677777778888888888888888877753 344667777777778888888888888877762
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------------ChhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006343 462 YNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-------------PPGVWGALLGAGRTHLNLDLAKLAAQHLM 527 (649)
Q Consensus 462 ~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 527 (649)
.+.+...+..++.+|.+.|++++|.+.++++. ..| +..+|..+..++...|+.+.|...+++++
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22346777788888888888888888887654 223 35677788888888888888888887776
Q ss_pred ccCC
Q 006343 528 ELEP 531 (649)
Q Consensus 528 ~~~p 531 (649)
+..|
T Consensus 314 ~~~~ 317 (327)
T 3cv0_A 314 EPFA 317 (327)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=6e-15 Score=137.79 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=158.0
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006343 363 ESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVL 439 (649)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 439 (649)
++++..+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3466778888889999999999999999765 4567789999999999999999999999999863 33466778888
Q ss_pred HHhhcc-----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHH
Q 006343 440 SACNHV-----------GLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGAL 506 (649)
Q Consensus 440 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 506 (649)
.++... |++++|+..|+...+ +.|+ ...+..+..+|...|++++|.+.+++.. ...++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 999999999999987 4675 8889999999999999999999999865 22778899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
..++...|++++|+..++++++++|+++..+..++.++...|++++|.+..+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=170.52 Aligned_cols=129 Identities=10% Similarity=0.123 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006343 102 VVAWGSMVDGYCKKGRVIEAREIFDKMP-------EKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTIL 174 (649)
Q Consensus 102 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 174 (649)
..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006343 175 FEACGRFFRY-REGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMS 230 (649)
Q Consensus 175 l~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 230 (649)
|.++++.|+. +.|.++++.|.+.|+.||..+|++++..+.+.+-++...+++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999985 7899999999999999999999999988887766666666655544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-14 Score=138.82 Aligned_cols=216 Identities=11% Similarity=0.074 Sum_probs=128.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYS 377 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (649)
.|..+...+...|++++|+..|+++++.. ++...+..+..++...|++++|...+..+.+......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 45566666666666677766666666544 4444444444444455555555444444433221100
Q ss_pred hcCCHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 006343 378 KCGNVVDAYRIFTNIDERN----IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 453 (649)
++ ...|..+...|...|++++|+..|++..+. .|+. ..+...|++++|..
T Consensus 73 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 73 -----------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 01 345556666666666666666666666653 3332 23444566666766
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 454 YFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 454 ~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
.++.+.. ..|+ ...+..++..+.+.|++++|.+.++++. .+.+..+|..+...+...|++++|+..++++++.+
T Consensus 127 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 6666665 3343 5566666666777777777777666654 23345566666666777777777777777777777
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHH
Q 006343 531 PDSATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
|+++..+..++.+|...|++++|.+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 76677777777777777777777763
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.2e-14 Score=134.46 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=152.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNID--ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEG--LVPN----QITFLSV 438 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l 438 (649)
..+..+...+...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 455667777888888888888877654 2567788888888999999999999999887742 1122 4778888
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCh
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNL 516 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~ 516 (649)
..++...|++++|..+|+.+.+ +.|+. +.+.+.|++++|.+.++++. ..|+ ...|..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~---~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT---EHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHh---cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8899999999999999999988 45663 45677788999999999875 4444 66888899999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 517 DLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
++|+..++++++..|+++..+..++.+|...|++++|.+..+...
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999554443
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.5e-16 Score=167.05 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=109.2
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006343 364 SDVSIQNSLVSLYSKCGNVVDAYRIFTNID-------ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL 436 (649)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 436 (649)
.-..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345679999999999999999999997753 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 006343 437 SVLSACNHVGL-VEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLI 491 (649)
Q Consensus 437 ~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 491 (649)
++|.++++.|. .++|.++|+.|.+ .|+.||..+|+|++....|.+-++...++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 99999999887 4788999999998 499999999999988777776555555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=8.2e-14 Score=135.15 Aligned_cols=241 Identities=10% Similarity=-0.083 Sum_probs=188.6
Q ss_pred hcCCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006343 307 VNNEQYEEAFRWFIEMLRKDV--RP-NQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVV 383 (649)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (649)
...|++++|+..|+++.+... .| +..++..+..++...|++++|...+..+.+..+. +..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345777888888888877532 11 3456677777788888888888888888777654 6678888899999999999
Q ss_pred HHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 384 DAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 384 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+|...|++.. +.+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|..+++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999998876 456789999999999999999999999999985 56665555666667788999999999988877
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 006343 461 LYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 461 ~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
. .+++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..++..+...|++++|...++++++++|++.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 33444444 47788888999999999998865 2232 56888899999999999999999999999999775
Q ss_pred chHHHHHHHHHhcCCchHHHHH
Q 006343 535 TPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
..+ +.++...|++++|.+-
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp HHH---HHHHHHHHHHHHC---
T ss_pred HHH---HHHHHHHHHHHhhHHH
Confidence 544 6678888888888763
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=6.7e-14 Score=135.63 Aligned_cols=242 Identities=11% Similarity=-0.019 Sum_probs=136.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc--ccHHHHHHHHHHh
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESD--VSIQNSLVSLYSK 378 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 378 (649)
.....+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+..+.+.+..++ ...+..+...|.+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444444555555555555544431 11222344444444455555555555554444221111 1124555666666
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHH
Q 006343 379 CGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIY 454 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 454 (649)
.|++++|...|++.. +.+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666544 334556666666666666777777666666654 333 33344444244444577777777
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCC----CCCC------hhHHHHHHHHHHhcCChhHHH
Q 006343 455 FKSMKTLYNIEPG-PEHYACMVDILGRAGS---LAEAIDLINSMT----FEPP------PGVWGALLGAGRTHLNLDLAK 520 (649)
Q Consensus 455 ~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~ll~~~~~~g~~~~a~ 520 (649)
|+.+.+ +.|+ ...+..+..++...|+ .++|...++++. ..|+ ..+|..+...+...|++++|.
T Consensus 165 ~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 165 FVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776665 2343 5566666666666666 555555555433 1133 246777888889999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
..++++++++|+++.+...+..+....+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999988888877665544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.4e-13 Score=139.28 Aligned_cols=245 Identities=11% Similarity=0.092 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC-hhHHHHHHHHHHHhCCCCcccHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN-QLTLSSVLSASAATAT-LNQGSQIHAHVVKMNMESDVSIQNSLV 373 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 373 (649)
...|+.+...+.+.|++++|+..|+++++. .|+ ...|..+..++...|+ +++|...+..+++..+. +..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 345677777777777788888888777764 443 4566666677777775 78888888777777655 677788888
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCcHH
Q 006343 374 SLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNH-VGLVE 449 (649)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 449 (649)
.+|.+.|++++|...|+++. +.+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888776 4677889999999999999999999999999863 3356778888888877 66657
Q ss_pred HH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC------
Q 006343 450 EG-----FIYFKSMKTLYNIEPG-PEHYACMVDILGRAG--SLAEAIDLINSMTFEPP-PGVWGALLGAGRTHL------ 514 (649)
Q Consensus 450 ~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g--~~~~A~~~~~~~~~~~~-~~~~~~ll~~~~~~g------ 514 (649)
+| +..|+.... +.|+ ...|..+..+|...| ++++|.+++.++...|+ ...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 578888876 5675 778888999999988 68999999988754444 567788888887763
Q ss_pred --C-hhHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 006343 515 --N-LDLAKLAAQHL-MELEPDSATPYVVLSDLYSVI 547 (649)
Q Consensus 515 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 547 (649)
+ .++|+.+++++ ++++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999998888776653
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.1e-12 Score=136.83 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=130.5
Q ss_pred HHHHHHccCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCCh---hHHHHHhccCCCCCcccHHHHHHHHHhcC-----
Q 006343 77 LISGYLKVGRCEEAARIFEAMVE-KDVVAWGSMVDGYCKKGRV---IEAREIFDKMPEKNVVAWTAMVDGYMKVD----- 147 (649)
Q Consensus 77 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 147 (649)
+...+.+.|++++|.+.|.+..+ .++..+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34455566777777777776643 3445555666666666766 77777777776666667777766555544
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHH
Q 006343 148 CFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRY---REGVQVHGLVSRFGFDYDIILGNSIITMYGRLG----FMD 220 (649)
Q Consensus 148 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g----~~~ 220 (649)
++++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| +......|..+|...+ +.+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6678888888877765332 344444444433322 23444444444444 3455566677777766 455
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcC---CHHHHHHHHhhCCCC---ChhHHHHHHHHHHcC----CChHHHHHHHhh
Q 006343 221 EANKVFSMMSKRDAVSWNSLISGYVHNG---EIEEAYRLFERMPGK---DFVSWTTMITGFSSK----GNLEKSIELFNM 290 (649)
Q Consensus 221 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~ 290 (649)
.+..++......++.++..|...|...| +.++|+..|++..+. +...+..|..+|... +++++|...|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 5666666666666667777888887777 777777777765432 223335566666443 566677777666
Q ss_pred CCCCChhhHHHHHHH-H--hcCCCHHHHHHHHHHHHHCC
Q 006343 291 MPEKDDVTWTAIISG-F--VNNEQYEEAFRWFIEMLRKD 326 (649)
Q Consensus 291 ~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g 326 (649)
....+...+..+... | ...+++++|+.+|++..+.|
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 652245556666655 3 34666666666666666554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.9e-13 Score=129.90 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
+..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 3334444444455555544444433 2344555666666666666666666666666643 33455566666666666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHH
Q 006343 446 GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAA 523 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 523 (649)
|++++|..+++.+.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+..+|..+...+...|+.++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777777777666652 12245666667777777777777777766654 2334566777777777777777777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHh
Q 006343 524 QHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
+++++++|+++..+..++.+...
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHccCcchHHHHHHHHHHHhh
Confidence 77777777776666666554443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=8.6e-13 Score=126.16 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN 443 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 443 (649)
.++..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 444555556666666666666666544 2345566666666666777777777776666642 234555666666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHH
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAK 520 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~ 520 (649)
..|++++|..+|+.+.. .+..|+ ...+..++.++.+.|++++|.+.++++. .+.+...|..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777766654 223443 5566666667777777777777766644 2234556666666777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
..++++++..|++...+..++.+|...|++++|.+..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77777777777667777777777777777777777544443
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=6.8e-13 Score=138.52 Aligned_cols=343 Identities=10% Similarity=-0.004 Sum_probs=176.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHhhCCCCChhhHHHHHHHHHhcC---
Q 006343 175 FEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFM---DEANKVFSMMSKRDAVSWNSLISGYVHNG--- 248 (649)
Q Consensus 175 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 248 (649)
...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 344455566666666666666655 222333444455555555 56666665555444445555555343333
Q ss_pred --CHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 006343 249 --EIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQY---EEAFRWFIEML 323 (649)
Q Consensus 249 --~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~ 323 (649)
++++|+..|++..++ .+..++..|...|...+.. .++++.+....
T Consensus 87 ~~~~~~A~~~~~~Aa~~------------------------------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~ 136 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFAN------------------------------GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ 136 (452)
T ss_dssp HHHHHHHHHHHHHHHHT------------------------------TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 445555555443322 1233444444444433322 22344444443
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHHhcC---CCCh
Q 006343 324 RKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG---NVVDAYRIFTNID---ERNI 397 (649)
Q Consensus 324 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~ 397 (649)
..|. ......+...+...+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|++.. .++.
T Consensus 137 ~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 137 AAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp HHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 3332 22333333444444433333333222222222234446667777777777 7777777776654 2333
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHhHHhcCCCCChhH
Q 006343 398 VSYNSMISGFAQN----GLGEEALNLFRKMKDEGLVPNQITFLSVLSA-C--NHVGLVEEGFIYFKSMKTLYNIEPGPEH 470 (649)
Q Consensus 398 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 470 (649)
..+..+...|... +++++|+.+|++.. .| +...+..+... + ...|++++|..+|+...+. .++..
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A 285 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRA 285 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 3335555555443 57777888877766 33 23333344333 2 4577888888888777652 25666
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 471 YACMVDILGRAG-----SLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 471 ~~~l~~~l~~~g-----~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
+..|..+|. .| +.++|.+++++.. ..++..+..|...|.. ..|.++|...++++.+ ++++.+...|+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg 361 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIA 361 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHH
Confidence 667777776 45 7888888888777 5566677777766654 3378888888888776 44677778888
Q ss_pred HHHHh----cCCchHHHHHHHHHhhCCC
Q 006343 542 DLYSV----IGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 542 ~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (649)
.+|.. ..+.++|....+...+.|.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88874 3467777776655555443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.3e-12 Score=122.35 Aligned_cols=196 Identities=10% Similarity=-0.024 Sum_probs=130.6
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
++.++..+...|...|++++|.+.|+.+. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455566666666677777776666554 3345566667777777777777777777776652 3345566666667
Q ss_pred hhcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChh
Q 006343 442 CNHV-GLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 442 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~ 517 (649)
+... |++++|..+|+.+.+ .+..|+ ...+..++.++.+.|++++|.+.++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777665 223333 5566677777777777777777776654 2334566677777777777777
Q ss_pred HHHHHHHHHhccCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 518 LAKLAAQHLMELEP-DSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 518 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+|...++++++..| +++..+..++.++...|+.+++..+.+.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 7777777777777777777777776665543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4e-12 Score=123.27 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=140.8
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCcccHHH
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAA----TATLNQGSQIHAHVVKMNMESDVSIQN 370 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (649)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .++.++|...+....+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666777777777777777777662 233445555555555 666666666666666554 455556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 371 SLVSLYSK----CGNVVDAYRIFTNIDE-RNIVSYNSMISGFAQ----NGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 371 ~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6777777766665542 355566666666666 777777777777776654 34445555555
Q ss_pred hhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh-
Q 006343 442 CNH----VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR----AGSLAEAIDLINSMTFEPPPGVWGALLGAGRT- 512 (649)
Q Consensus 442 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~- 512 (649)
+.. .+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 67777777777766652 235556666666666 67777777776665422235556666666666
Q ss_pred ---cCChhHHHHHHHHHhccCC
Q 006343 513 ---HLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 513 ---~g~~~~a~~~~~~~~~~~p 531 (649)
.++.++|...+++++++.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 6677777777777777666
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1e-12 Score=122.55 Aligned_cols=192 Identities=11% Similarity=0.040 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...+..+++..+. +...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3445555555555556666666665555431 223334444444555555555555555555544433 34445555555
Q ss_pred HHhc-----------CCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 376 YSKC-----------GNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 376 ~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
|.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++.++.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 66666666666554 2345566666666666666666666666666654 455566666666
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
+...|++++|+..|+...+ +.| +...+..+..++.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665 234 3555666666666666666666666543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2e-12 Score=123.59 Aligned_cols=205 Identities=14% Similarity=0.051 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 296 DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
...|..+...+...|++++|+..|+++.+. ... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~~~-~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------DPS-SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------CTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------CCC-hHHHHHHHHHH
Confidence 345555556666666666666666655543 211 34455556666
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHH
Q 006343 376 YSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 451 (649)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++...+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666777777777766654 34566777788888888888888888888877333453 45667777788888999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006343 452 FIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL 529 (649)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 529 (649)
..+|+.+.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...+..+...+...|+.+.|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9998888773 22347788889999999999999999998764 3345667888888889999999999999999999
Q ss_pred CCCCCchHH
Q 006343 530 EPDSATPYV 538 (649)
Q Consensus 530 ~p~~~~~~~ 538 (649)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 997766544
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.8e-13 Score=127.01 Aligned_cols=196 Identities=12% Similarity=0.023 Sum_probs=154.0
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006343 364 SDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS 440 (649)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 440 (649)
.....+..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 355667778888999999999999999875 3567889999999999999999999999999863 446778888889
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
.+...|++++|..+|+.+.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...|..++..+...|+++.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999873 23468889999999999999999999999875 34567889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 519 AKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
|+..++++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999995555443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.5e-12 Score=122.66 Aligned_cols=243 Identities=11% Similarity=0.008 Sum_probs=182.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 006343 267 SWTTMITGFSSKGNLEKSIELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPN--QLTLSSVLSAS 341 (649)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 341 (649)
.+......+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344555667777777777777776543 3455788888888889999999999988887432222 23477788888
Q ss_pred HccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 006343 342 AATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALN 418 (649)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 418 (649)
...|++++|...+..+.+..+. +..++..+...|.+.|++++|...|++... .+...|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988887654 667889999999999999999999998873 456678877734445569999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHHHhcCCHHHHHH
Q 006343 419 LFRKMKDEGLVPNQITFLSVLSACNHVGL---VEEGFIYFKSMKTLYNIEPGP------EHYACMVDILGRAGSLAEAID 489 (649)
Q Consensus 419 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~l~~~g~~~~A~~ 489 (649)
.|++..+.. +.+...+..+..++...|. .++|...|+.+.+...-.|+. ..|..+...|.+.|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999863 3346677777778888888 888999999888754334542 578889999999999999999
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHH
Q 006343 490 LINSMT-FEPP-PGVWGALLGAGR 511 (649)
Q Consensus 490 ~~~~~~-~~~~-~~~~~~ll~~~~ 511 (649)
.++++. ..|+ +..+..+.....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHhcCccHHHHHHHhhhhhc
Confidence 999875 4444 555555544443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3.2e-12 Score=119.52 Aligned_cols=207 Identities=16% Similarity=0.054 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006343 295 DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVS 374 (649)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 374 (649)
+...|..+...+...|++++|+..|+++.+.. |+ +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 34566666777777777777777777766532 21 2334455556
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHH
Q 006343 375 LYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQN-GLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVE 449 (649)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 449 (649)
.|...|++++|.+.|++.. +.+...|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666554 34566777788888888 888888888888887333344 456777777888889999
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-C-CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 006343 450 EGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-E-PPPGVWGALLGAGRTHLNLDLAKLAAQH 525 (649)
Q Consensus 450 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 525 (649)
+|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++. . + .+...+..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999888773 34 47788889999999999999999988765 2 3 4566777777778899999999999999
Q ss_pred HhccCCCCCchHHHH
Q 006343 526 LMELEPDSATPYVVL 540 (649)
Q Consensus 526 ~~~~~p~~~~~~~~l 540 (649)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999887766554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.5e-12 Score=131.79 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChHHHHHHHHHH
Q 006343 332 LTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGN-VVDAYRIFTNID---ERNIVSYNSMISGF 407 (649)
Q Consensus 332 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 407 (649)
..+..+..++...|+.++|...+..+++..+. +..+|+.+..+|.+.|+ +++|+..|++.. +.+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 35666677788899999999999999998766 77889999999999997 999999999886 46778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh-cCCHH
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGR-AGSLA 485 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~-~g~~~ 485 (649)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+.+++ +.| +...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999964 44577888899999999999999999999998 466 48899999999999 67657
Q ss_pred HH-----HHHHHhCC-CCC-ChhHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC--------
Q 006343 486 EA-----IDLINSMT-FEP-PPGVWGALLGAGRTHL--NLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG-------- 548 (649)
Q Consensus 486 ~A-----~~~~~~~~-~~~-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 548 (649)
+| ++.+++.. ..| +...|..+...+...| +.++|+..++++ +.+|+++.++..|+.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 47777654 444 5779999999998888 689999999998 999999999999999999985
Q ss_pred -CchHHHHHHHHH
Q 006343 549 -KKRDGNRVRMKK 560 (649)
Q Consensus 549 -~~~~a~~~~~~~ 560 (649)
..++|.++.+.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 258888877766
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=2.1e-11 Score=118.05 Aligned_cols=223 Identities=12% Similarity=0.009 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHH
Q 006343 330 NQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK----CGNVVDAYRIFTNIDE-RNIVSYNSMI 404 (649)
Q Consensus 330 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 404 (649)
+..++..+...+...|++++|...+....+.+ ++..+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566777778889999999999999988843 55778889999999 9999999999998763 4778899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 405 SGFAQ----NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNH----VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 405 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .|++++|..+|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888888 99999999999999872 2 5777888999
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh--
Q 006343 477 ILGR----AGSLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV-- 546 (649)
Q Consensus 477 ~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 546 (649)
+|.+ .+++++|.+.+++.....++..+..+...+.. .+++++|+..++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987634567788889999998 9999999999999999876 7789999999999
Q ss_pred --cCCchHHHHHHHHHhhCC
Q 006343 547 --IGKKRDGNRVRMKKKLKR 564 (649)
Q Consensus 547 --~g~~~~a~~~~~~~~~~~ 564 (649)
.|++++|.+..+...+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999655554433
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=3.9e-12 Score=115.15 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMV 475 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (649)
+...|..+...|...|++++|++.|++.++.. +-+..++..+..++...|++++|...++..... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777778887777777753 334556667777777778888888777777662 222366667777
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 006343 476 DILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDG 553 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (649)
..+...+++++|.+.+.+.. .+.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77778888888888777654 3344667777788888888888888888888888888888888888888888888888
Q ss_pred HHHHH
Q 006343 554 NRVRM 558 (649)
Q Consensus 554 ~~~~~ 558 (649)
.+..+
T Consensus 161 ~~~~~ 165 (184)
T 3vtx_A 161 VKYFK 165 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=9.9e-13 Score=135.33 Aligned_cols=188 Identities=10% Similarity=0.035 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDE-----RN----IVSYNSMISGFAQNGL--------------------GEEALN 418 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 418 (649)
++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555544331 11 2245555555555555 555555
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 006343 419 LFRKMKDE----GLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAID 489 (649)
Q Consensus 419 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~ 489 (649)
.+++.... +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..++.+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554331 10111 224444555555666666666666655442111121 2245556666666666666666
Q ss_pred HHHhCC----CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHH
Q 006343 490 LINSMT----FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS------ATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 490 ~~~~~~----~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
.+++.. ..++ ..++..+...+...|++++|...+++++++.|.. +.++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 665432 0111 3345555556666666666666666666654322 3355566666666666666666
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=7.9e-13 Score=136.55 Aligned_cols=258 Identities=10% Similarity=0.000 Sum_probs=162.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCChhHHHHHHHHHHHh----C-CCCcccHHH
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPN-Q----LTLSSVLSASAATATLNQGSQIHAHVVKM----N-MESDVSIQN 370 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 370 (649)
.+...+...|++++|+..|+++++. .|+ . ..+..+...+...|+++.|...+..+.+. + ......++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3444555555555555555555553 222 1 23444445555555555555555544332 1 111334556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDE---------RNIVSYNSMISGFAQNGL-----------------GEEALNLFRKMK 424 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~ 424 (649)
.+...|...|++++|...|++... ....++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666677777777777777666541 123366777777777787 778877777765
Q ss_pred Hc----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 425 DE----GLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 425 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..++.+|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11111 235666677778888888888888877653211122 2367778888888888888888887654
Q ss_pred -C---CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 496 -F---EPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS------ATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 496 -~---~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
. ..+ ..++..+...+...|++++|...+++++++.|+. ...+..++.+|...|++++|.+..+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 111 4567778888888899999999999888865533 347888899999999999998844433
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=4.4e-12 Score=122.80 Aligned_cols=215 Identities=9% Similarity=-0.034 Sum_probs=178.0
Q ss_pred ccCChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHH
Q 006343 343 ATATLNQGSQIHAHVVKMNME---SDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEA 416 (649)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 416 (649)
..|++++|...+..+.+.... .+..++..+...|...|++++|...|++.. +.+...|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457889999999998886432 246778889999999999999999999876 45688999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 006343 417 LNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT- 495 (649)
Q Consensus 417 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~- 495 (649)
+..|++..+.. +.+..++..+..++...|++++|..+|+.+.+ +.|+..........+.+.|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999863 44577888899999999999999999999987 45765555556666788899999999997654
Q ss_pred -CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 496 -FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD----SATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 496 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+..+...+
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444554 777777888899999999999998774 368899999999999999999996665544
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.4e-12 Score=136.96 Aligned_cols=186 Identities=8% Similarity=0.009 Sum_probs=161.9
Q ss_pred cccHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNV-VDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS 440 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 440 (649)
+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|+..|++.++. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 556667777777777888 88888877665 345778899999999999999999999999885 577788888888
Q ss_pred Hhhcc---------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--------CCHHHHHHHHHhCC-CCC---
Q 006343 441 ACNHV---------GLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA--------GSLAEAIDLINSMT-FEP--- 498 (649)
Q Consensus 441 a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~--------g~~~~A~~~~~~~~-~~~--- 498 (649)
++... |++++|+..|+...+ +.| +...|..+..+|.+. |++++|.+.+++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 89998 999999999999987 356 488899999999998 99999999999876 345
Q ss_pred -ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 499 -PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 499 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
+...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999986
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=2e-12 Score=128.99 Aligned_cols=259 Identities=10% Similarity=0.046 Sum_probs=170.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHh----CCC-CcccHHH
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPN-----QLTLSSVLSASAATATLNQGSQIHAHVVKM----NME-SDVSIQN 370 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 370 (649)
.....+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+. +.. ....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555566666666666555532 22 134444555555566666665555544332 111 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDE-----RN----IVSYNSMISGFAQNGL--------------------GEEALNLFR 421 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 421 (649)
.+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 677777777888888777776541 22 2367777778888888 888888887
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 006343 422 KMKDE----GLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLIN 492 (649)
Q Consensus 422 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~ 492 (649)
+.... +..|. ..++..+...+...|++++|..+++...+...-.++ ...+..++..+.+.|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 11111 335666777788889999999988887653211122 3377888889999999999999888
Q ss_pred hCC----CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHH
Q 006343 493 SMT----FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS------ATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 493 ~~~----~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
+.. ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+..+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 754 1122 4467778888899999999999999998876543 3378889999999999999999555
Q ss_pred HHh
Q 006343 559 KKK 561 (649)
Q Consensus 559 ~~~ 561 (649)
...
T Consensus 328 ~a~ 330 (338)
T 3ro2_A 328 KHL 330 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=9.6e-13 Score=135.46 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=182.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHcCCChHHHHHHHhhCCC-----C----Ch
Q 006343 233 DAVSWNSLISGYVHNGEIEEAYRLFERMPG--K-D----FVSWTTMITGFSSKGNLEKSIELFNMMPE-----K----DD 296 (649)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~ 296 (649)
....+......+...|++++|+..|++... | + ..++..+...|...|++++|...|++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555566666777777777777665532 1 2 12444555555555555555555544321 0 12
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCC-CCcccHHHHHHHH
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNM-ESDVSIQNSLVSL 375 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 375 (649)
.++..+...|...|++++|+..|++..+.. | +.+. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS--R-----------------------------ELNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-----------------------------hcccccchHHHHHHHHHH
Confidence 244445555555555555555555444310 0 0000 0012345556666
Q ss_pred HHhcCC--------------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 376 YSKCGN--------------------VVDAYRIFTNIDE-----R----NIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 376 ~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
|...|+ +++|...+++... . ...++..+...|...|++++|+..+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666 6666666655431 1 1346777888888899999999988887753
Q ss_pred CC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 006343 427 GL-VPN----QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-- 495 (649)
Q Consensus 427 g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-- 495 (649)
.. .++ ..++..+...+...|++++|..+++.......-.++ ...+..++.+|.+.|++++|.+.+++..
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 122 236777778888999999999999887653211122 5677888999999999999999988754
Q ss_pred --CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCCchH
Q 006343 496 --FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP------DSATPYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 496 --~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 552 (649)
..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 45778888899999999999999999998643 335678889999999887744
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=3.9e-10 Score=121.75 Aligned_cols=421 Identities=9% Similarity=0.012 Sum_probs=286.1
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCCChhhHH
Q 006343 100 KDVVAWGSMVDGYCKKGRVIEAREIFDKMPE--K-NVVAWTAMVDGYMKVDC---FEDGFDLFLSMRRGG-MAFNSITLT 172 (649)
Q Consensus 100 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~~ 172 (649)
.|..+|..++..+.+.+.++.++.+|+++.. | ....|...+..-.+.|. ++.+..+|++..... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4778999999999999999999999999875 3 44578888888888888 999999999998764 247777777
Q ss_pred HHHHHHhccCCh--------HHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHh---------cCCHHHHHHHHhhCCCC
Q 006343 173 ILFEACGRFFRY--------REGVQVHGLVSR-FGF-DYD-IILGNSIITMYGR---------LGFMDEANKVFSMMSKR 232 (649)
Q Consensus 173 ~ll~a~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~y~~---------~g~~~~A~~~~~~~~~~ 232 (649)
.-+.-..+.++. +...++|+.++. .|. .++ ..+|...+..... .++++.++.+|++...-
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777665555543 345578887765 466 554 4688888776543 34578889999887752
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhh-------CCC--------
Q 006343 233 DA----VSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNM-------MPE-------- 293 (649)
Q Consensus 233 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~-------- 293 (649)
.. ..|.....--...+. ..+.+++.+. ...++.|...+.. +..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 11 233222111111010 0011111110 0112222222221 110
Q ss_pred ------C--------ChhhHHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH-
Q 006343 294 ------K--------DDVTWTAIISGFVNNE-------QYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGS- 351 (649)
Q Consensus 294 ------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~- 351 (649)
| ....|...+.---..+ ..+.+..+|++++.. .+-+...|.....-+...|+.+.|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 0234655555443333 134566788888874 3446667777777788889999996
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hHHHHHHHHH
Q 006343 352 QIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-------------RN------------IVSYNSMISG 406 (649)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~ 406 (649)
.+++.++...+ .+..++..++....+.|+++.|.++|+.+.. |+ ...|...+..
T Consensus 365 ~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99999987654 3666788889999999999999999998763 21 2368888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 006343 407 FAQNGLGEEALNLFRKMKDE-GLVPNQITFLSVLSACNH-VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSL 484 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~ 484 (649)
..+.|..+.|..+|.+.++. + .+....|......-.+ .++++.|..+|+...+.+ +.+...+...++.....|+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCH
Confidence 88899999999999999886 2 1223334332222223 356999999999999853 34566778899999999999
Q ss_pred HHHHHHHHhCC-CCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 485 AEAIDLINSMT-FEP----PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 485 ~~A~~~~~~~~-~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
+.|..+|+... ..| ....|...+.--..+|+.+.+..+.+++.+..|+++ ....++.-|
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999866 233 245899998888999999999999999999999664 344444444
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=5.8e-12 Score=113.99 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=143.5
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSA 441 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 441 (649)
++.+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56778889999999999999999999876 4577889999999999999999999999998863 3445667777778
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~ 518 (649)
+...++++.+...+..... +.| +...+..++.+|.+.|++++|++.+++.. . +.+..+|..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8899999999999999887 345 48889999999999999999999999875 3 4457789999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 006343 519 AKLAAQHLMELEPDSA 534 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~ 534 (649)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=3.1e-11 Score=119.23 Aligned_cols=218 Identities=8% Similarity=0.023 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------hHHHHHHHHHHHh-CCCCcccHHHHHHHHHH
Q 006343 313 EEAFRWFIEMLRKDVRPNQLTLSSVLSASA-------ATATL-------NQGSQIHAHVVKM-NMESDVSIQNSLVSLYS 377 (649)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 377 (649)
++|+..|++++... +-+...|..+...+. ..|+. ++|..+++++++. .+ .+..+|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 67778888887742 334445655555554 34775 7888888888873 43 35668888999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccCcHHHHH
Q 006343 378 KCGNVVDAYRIFTNIDE--R-NIV-SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN-HVGLVEEGF 452 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~ 452 (649)
+.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998763 3 344 89999999999999999999999998864 334445544433322 369999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 006343 453 IYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT----FEP--PPGVWGALLGAGRTHLNLDLAKLAAQH 525 (649)
Q Consensus 453 ~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 525 (649)
.+|+...+. .| +...|..+++.+.+.|++++|..+|++.. .+| ....|..++.....+|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998874 34 58888999999999999999999998764 244 356899999999999999999999999
Q ss_pred HhccCCCCCch
Q 006343 526 LMELEPDSATP 536 (649)
Q Consensus 526 ~~~~~p~~~~~ 536 (649)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999976543
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=7.7e-12 Score=136.71 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=133.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYAC 473 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 473 (649)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|+..|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 4567888888888899999999999988885 444 66788888888899999999999988887 4675 788889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 006343 474 MVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKR 551 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (649)
++.+|.+.|++++|++.+++.. ..| +...|..++.++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998765 444 47789999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 006343 552 DGNRV 556 (649)
Q Consensus 552 ~a~~~ 556 (649)
+|.+.
T Consensus 163 ~A~~~ 167 (723)
T 4gyw_A 163 DYDER 167 (723)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99883
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=4.7e-12 Score=130.73 Aligned_cols=265 Identities=10% Similarity=0.023 Sum_probs=169.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHcCCChHHHHHHHhhCCCC---------ChhhH
Q 006343 236 SWNSLISGYVHNGEIEEAYRLFERMPG--K-DF----VSWTTMITGFSSKGNLEKSIELFNMMPEK---------DDVTW 299 (649)
Q Consensus 236 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 299 (649)
.+..+...+...|++++|+..|++..+ + +. .++..+...|...|++++|...|++..+. ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 444556667777777777777776542 2 22 24555555566666666666655544320 22345
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhC-CCCcccHHHHHHHHHHh
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMN-MESDVSIQNSLVSLYSK 378 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 378 (649)
..+...|...|++++|+..|++..+.. .+.+ ......++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544310 0000 01123345556666666
Q ss_pred cCC-----------------HHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC
Q 006343 379 CGN-----------------VVDAYRIFTNIDE---------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PN 431 (649)
Q Consensus 379 ~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 431 (649)
.|+ +++|...+++... ....+|..+...|...|++++|+..|++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666666655431 12246777888888899999999888887763111 12
Q ss_pred ----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC
Q 006343 432 ----QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-F---EPP 499 (649)
Q Consensus 432 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~---~~~ 499 (649)
..++..+...+...|++++|..+|+.......-..+ ...+..+..+|.+.|++++|.+.+++.. . .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 236777788888999999999999887763221111 5677888999999999999999998764 1 111
Q ss_pred ----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 500 ----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 500 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
..++..+...+...|+.++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777888899999999999999999999877
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=5.3e-11 Score=111.82 Aligned_cols=152 Identities=10% Similarity=-0.011 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACM 474 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 474 (649)
|+..|......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|+...+ ..|+ ...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 34555555666666666666666666666654225555555555566666666666666666655 3443 5556666
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-Ch-------hHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHH
Q 006343 475 VDILGRAGSLAEAIDLINSMT-FEP-PP-------GVWGALLGAGRTHLNLDLAKLAAQHLMELEPD--SATPYVVLSDL 543 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~-~~~-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 543 (649)
+.+|.+.|++++|.+.+++.. ..| +. .+|..+...+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666666543 222 23 33555556666666666666666666666666 66666666666
Q ss_pred HHhcCCc
Q 006343 544 YSVIGKK 550 (649)
Q Consensus 544 ~~~~g~~ 550 (649)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=1.6e-11 Score=122.32 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=160.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHcCCChHHHHHHHhhCCCC---------ChhhH
Q 006343 236 SWNSLISGYVHNGEIEEAYRLFERMPG--K-D----FVSWTTMITGFSSKGNLEKSIELFNMMPEK---------DDVTW 299 (649)
Q Consensus 236 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 299 (649)
.+......+...|++++|+..|++..+ | + ...+..+...|...|++++|...|++..+. ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455566667777777777665532 1 2 134445555555555555555555443210 12344
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006343 300 TAIISGFVNNEQYEEAFRWFIEMLRKDV-RPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK 378 (649)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (649)
..+...|...|++++|+..|++..+... .++.. ....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4455555555555555555554433100 00100 012244555556666
Q ss_pred cCC--------------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 006343 379 CGN--------------------VVDAYRIFTNIDE-----R----NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGL- 428 (649)
Q Consensus 379 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 428 (649)
.|+ +++|...+++... . ....+..+...+...|++++|+..+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 6666666655431 1 133677777888888888888888888765311
Q ss_pred CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C---
Q 006343 429 VPN----QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-F--- 496 (649)
Q Consensus 429 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~--- 496 (649)
.++ ..++..+...+...|++++|..+++.......-.++ ...+..++.+|...|++++|.+.+++.. .
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 111 236677777888889999999988887653221222 5567788889999999999999888754 1
Q ss_pred CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 497 EPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 497 ~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.++ ..++..+...+...|++++|...+++++++.++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 112 346778888899999999999999999998773
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=3.5e-09 Score=114.38 Aligned_cols=420 Identities=10% Similarity=0.029 Sum_probs=247.4
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccCC---hHHHHHHHHhccc-----CChhHHH
Q 006343 36 RNAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVGR---CEEAARIFEAMVE-----KDVVAWG 106 (649)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~-----~~~~~~~ 106 (649)
.|..+|..++..+.+.+..+.+..+|+++... +.....|..-+..-.+.++ ++.+..+|++.+. +++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 46667888888887788888888888888776 3344556666777777777 8888888887753 5666777
Q ss_pred HHHHHHHhCCCh--------hHHHHHhccCC------CC-CcccHHHHHHHHHh---------cCChhHHHHHHHHHHhC
Q 006343 107 SMVDGYCKKGRV--------IEAREIFDKMP------EK-NVVAWTAMVDGYMK---------VDCFEDGFDLFLSMRRG 162 (649)
Q Consensus 107 ~li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 162 (649)
..+....+.++. +..+++|+... ++ +...|...+..... +++.+.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 776655554443 23346666532 22 23456666654432 23456677777777642
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------CCC----
Q 006343 163 GMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSM-------MSK---- 231 (649)
Q Consensus 163 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~-------~~~---- 231 (649)
....-..+|.....-....+ ...+..++... ..+++.|..++.. +.+
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 11111122221111100000 01111111110 0111222222211 100
Q ss_pred ----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHhhCC---CCChhHHHHHHHHHHcCCChHH
Q 006343 232 ----------R--D------AVSWNSLISGYVHNG-------EIEEAYRLFERMP---GKDFVSWTTMITGFSSKGNLEK 283 (649)
Q Consensus 232 ----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 283 (649)
| + ...|...+.---.++ ..+.+..+|++.. ......|...+..+.+.|+.++
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH
Confidence 0 0 124555554433332 1233445555554 2356677777777777888888
Q ss_pred HH-HHHhhCCC---CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHH
Q 006343 284 SI-ELFNMMPE---KDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDV---------RPN------------QLTLSSVL 338 (649)
Q Consensus 284 A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll 338 (649)
|. .+|++... .+...|-..+....+.|++++|.++|++++.... .|+ ...|...+
T Consensus 362 a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 86 88877653 3555677778888888888888888888876310 132 23567777
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHH
Q 006343 339 SASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG-NVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGE 414 (649)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 414 (649)
....+.|.++.|+.++..+.+........+|...+.+-.++| +.+.|.++|+... +.+...|...+......|+.+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 777778888899999988877622223344444444444554 4888888888776 356667778888888888899
Q ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 006343 415 EALNLFRKMKDEGLVP--NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR 480 (649)
Q Consensus 415 ~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~ 480 (649)
.|..+|++.+.....+ ....|...+.--...|+.+.+..+.+++.+. .|+......+++-|.-
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHhcC
Confidence 9999999888763222 2345556666556778888999998888874 4555555555666543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=4.1e-11 Score=122.43 Aligned_cols=227 Identities=8% Similarity=0.032 Sum_probs=113.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCC------cccHHH
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDV-RPN----QLTLSSVLSASAATATLNQGSQIHAHVVKMNMES------DVSIQN 370 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 370 (649)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+.+.|...+..+.+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556666777777777777665310 122 2344445555555555555555555444321110 123445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIFTNIDE-----RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDE----GLVP-NQITFL 436 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 436 (649)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555566666666666666555431 11 124555666666666666666666665541 2212 234455
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPG---PEHYACMVDILGRAGS---LAEAIDLINSMTFEPP-PGVWGALLGA 509 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ll~~ 509 (649)
.+..++...|++++|..+++.......-.++ ...+..+..++...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5555566666666666666555442111111 2223445555555555 5555555555542222 2234444555
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 006343 510 GRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~ 528 (649)
+...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=8.2e-11 Score=105.99 Aligned_cols=152 Identities=14% Similarity=0.003 Sum_probs=75.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAG 482 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g 482 (649)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444433321 122333344444444444444444444444431 1122444444555555555
Q ss_pred CHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 006343 483 SLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVR 557 (649)
Q Consensus 483 ~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (649)
++++|.+.++++. .+.+...|..++..+...|++++|...++++++..|+++..+..++.+|...|++++|.+..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555554433 22334555555556666666666666666666666666666666666666666666666633
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.5e-10 Score=104.18 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=144.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN 443 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 443 (649)
..+..+...+...|++++|...|+++.. .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566778889999999999999998873 467789999999999999999999999998863 446778888888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 006343 444 HVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
..|++++|..+|+.+.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+..+|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 33468888999999999999999999998865 34457789999999999999999999
Q ss_pred HHHHHhccCCCCCchH
Q 006343 522 AAQHLMELEPDSATPY 537 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~ 537 (649)
.+++++++.|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999776543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=8.8e-12 Score=123.01 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=98.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHh------CC-
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLRK-------DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKM------NM- 362 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 362 (649)
.+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666667777777777777777766652 11112233444444455555555555555444332 11
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 006343 363 ESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDE----- 426 (649)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 426 (649)
.....++..+...|...|++++|...|++... .....+..+...+...|++++|+..|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 11223344444455555555555554443321 01123444444455555555555555544432
Q ss_pred -CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 006343 427 -GLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLY------NIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFE 497 (649)
Q Consensus 427 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 497 (649)
+..|+ ..++..+..++...|++++|..+|+.+.+.. ...|. ...+..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------------ 243 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------------ 243 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH------------------------
Confidence 11111 1233334444444444444444444443310 00110 000000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 006343 498 PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 498 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
...+..+...+...+.+..+...++++....|..+.++..++.+|...|++++|.+.
T Consensus 244 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 244 --AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp --HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 011112222233444555555666666666666666666666666666666666663
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=3.1e-10 Score=111.95 Aligned_cols=209 Identities=10% Similarity=0.050 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHhCCCCcccHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC----CChHHHHHHHHHHHh
Q 006343 348 NQGSQIHAHVVKMNMESDVSIQNSLVSLYS-------KCGNV-------VDAYRIFTNIDE----RNIVSYNSMISGFAQ 409 (649)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 409 (649)
+.|..+++++++..+. ++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677788888876543 6778888887776 35885 899999997653 355689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-hcCCHH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQI--TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILG-RAGSLA 485 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~-~~g~~~ 485 (649)
.|++++|..+|++.++. .|+.. .|..+...+.+.|++++|+.+|+...+ ..| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999984 56543 788888889999999999999999987 334 4555655444432 379999
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 486 EAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL---EPD-SATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 486 ~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
+|.++|++.. .+.+...|..++..+...|+++.|+.+++++++. .|+ ....+..++..+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875 3446789999999999999999999999999995 553 566888999999999999999996655
Q ss_pred Hhh
Q 006343 560 KKL 562 (649)
Q Consensus 560 ~~~ 562 (649)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=7.7e-11 Score=123.75 Aligned_cols=176 Identities=9% Similarity=-0.089 Sum_probs=153.3
Q ss_pred HHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 006343 382 VVDAYRIFTNID---ERNIVSYNSMISGFAQNGLG-EEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKS 457 (649)
Q Consensus 382 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 457 (649)
++++...++... +.+...|..+...|...|++ ++|++.|++.++.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666665543 35678899999999999999 99999999999863 33477888999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhc--------CChhH
Q 006343 458 MKTLYNIEPGPEHYACMVDILGRA---------GSLAEAIDLINSMT--FEPPPGVWGALLGAGRTH--------LNLDL 518 (649)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~l~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~--------g~~~~ 518 (649)
..+ +.|+...+..+..+|... |++++|.+.+++.. .+.+...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 987 578888999999999999 99999999999875 344578999999999988 99999
Q ss_pred HHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchHHHHH-HHHHh
Q 006343 519 AKLAAQHLMELEP---DSATPYVVLSDLYSVIGKKRDGNRV-RMKKK 561 (649)
Q Consensus 519 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~ 561 (649)
|+..++++++++| +++..|..++.+|...|++++|.+. .+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999994 44444
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.3e-10 Score=109.01 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHH
Q 006343 329 PNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMIS 405 (649)
Q Consensus 329 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 405 (649)
.|...+......+...|++++|...+..+++....++...+..+...|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566667777777888888888888887777664566666667777888888888888877765 334557777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPN-Q-------ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG---PEHYACM 474 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 474 (649)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|+..|+.+.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888887775 333 3 3455566666777888888888877765 4554 4566667
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 475 VDILGRAGSL--AEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 475 ~~~l~~~g~~--~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
..+|...|+. ++|..+ ...+...+..+ .....+.+++|+..++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777655543 222211 11222333222 2334566799999999999999999888888877654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2.7e-09 Score=108.31 Aligned_cols=259 Identities=14% Similarity=0.030 Sum_probs=167.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHHhCCCC-c----ccHHHHH
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVRPNQL----TLSSVLSASAATATLNQGSQIHAHVVKMNMES-D----VSIQNSL 372 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 372 (649)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..... + ..+...+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444556677777777777766543111221 33344455566677777777666555432111 1 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDE----------R-NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLV--P--NQITFLS 437 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 437 (649)
...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7778888888888888776541 1 1235566777888899999999999888764322 1 1245666
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----hhHHHHH
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYA-----CMVDILGRAGSLAEAIDLINSMT-FEPP-----PGVWGAL 506 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~l~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l 506 (649)
+...+...|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888999999999988876322211111222 23345778999999999998875 2221 2245677
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHH-HHHH
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDS------ATPYVVLSDLYSVIGKKRDGNRV-RMKK 560 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~-~~~~ 560 (649)
...+...|+.++|...++++++..+.. ...+..++.+|...|++++|... .+.+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 778888999999999999988764422 13677889999999999999984 4443
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=9.7e-12 Score=122.69 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhc-----CCCC
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDE------GLVP-NQITFLSVLSACNHVGLVEEGFIYFKSMKTLY-----NIEP 466 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p 466 (649)
++..+...|...|++++|+..+++.... +-.| ...++..+...+...|++++|..+|+.+.+.. +-.|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555555555555555442 1112 13344555555566666666666666555432 1122
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C--------CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 467 G-PEHYACMVDILGRAGSLAEAIDLINSMT-F--------EPP-PGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 467 ~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~--------~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
. ...+..++..+.+.|++++|.++++++. . .|. ..++..+...+...|++++|+..++++++
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 4455566666666666666666665543 1 121 23556666666677777777777777665
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=2.1e-09 Score=109.45 Aligned_cols=228 Identities=8% Similarity=0.042 Sum_probs=124.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCC------CcccHH
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDV-RPN----QLTLSSVLSASAATATLNQGSQIHAHVVKMNME------SDVSIQ 369 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ 369 (649)
.....+...|++++|+..|++..+.-. .++ ..++..+..++...|+.+.|...+..+.+.... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455667777777777777665311 122 224445555556666666666665554432110 013345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNIDE-----RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDE----GLVPNQITFL 436 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~ 436 (649)
+.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 5566666666666666666655431 11 235566666667777777777777666551 1122244555
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYNIEPG---PEHYACMVDILGRAGS---LAEAIDLINSMTFEPP-PGVWGALLGA 509 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ll~~ 509 (649)
.+..++.+.|++++|..+++.......-.++ ...+..+..++...|+ +.+|..++++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 6666666677777777777666653222112 2334455555556666 6666666666442222 2244455555
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 006343 510 GRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~ 528 (649)
+...|++++|...++++++
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=1e-09 Score=111.95 Aligned_cols=225 Identities=11% Similarity=0.043 Sum_probs=118.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCC
Q 006343 209 IITMYGRLGFMDEANKVFSMMSK-----R----DAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKG 279 (649)
Q Consensus 209 l~~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 279 (649)
....+...|++++|...|++... + ...++..+...|...|++++|+..+.+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al------------------ 170 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY------------------ 170 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 44456667777777777766533 1 22456666666777777776666655332
Q ss_pred ChHHHHHHHhhCCCC---ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHH
Q 006343 280 NLEKSIELFNMMPEK---DDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDV-RPN----QLTLSSVLSASAATATLNQGS 351 (649)
Q Consensus 280 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~ 351 (649)
+++...... ...+++.+...|...|++++|+..|++.++... .++ ..++..+..++...|++++|.
T Consensus 171 ------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 171 ------EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp ------HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 222222110 122445555555555555555555555443200 011 124444555555555555555
Q ss_pred HHHHHHHHh----CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh---HHHHHHHHHHHhcCC---HHH
Q 006343 352 QIHAHVVKM----NM-ESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----RNI---VSYNSMISGFAQNGL---GEE 415 (649)
Q Consensus 352 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~---~~~~~li~~~~~~g~---~~~ 415 (649)
..+..+.+. +. +....++..+...|.+.|++++|...|++... .+. ..+..+...|...|+ .++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 555544441 22 22344555666666666666666666665441 121 124455556666666 566
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 416 ALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 416 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
|+.++++. +..|+ ...+..+...+...|++++|..+|+....
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666554 22232 23455566667777777777777776654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=5.8e-10 Score=121.90 Aligned_cols=162 Identities=15% Similarity=0.215 Sum_probs=141.0
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLS 440 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 440 (649)
+..+++.|..+|.+.|++++|.+.|++.. +.+..+|+.+...|.+.|++++|+..|++.++. .|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45678888899999999999999998875 456778999999999999999999999999886 454 678888999
Q ss_pred HhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChh
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~ 517 (649)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++.. ..|+ ...|..|+.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 5675 8899999999999999999999999865 4554 778999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 006343 518 LAKLAAQHLMELEP 531 (649)
Q Consensus 518 ~a~~~~~~~~~~~p 531 (649)
+|++.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999998655
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=9.7e-11 Score=101.84 Aligned_cols=139 Identities=9% Similarity=-0.003 Sum_probs=101.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGS 483 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~ 483 (649)
.+...|++++|+..+++.... .|+ ...+..+...|...|++++|++.|+...+ +.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 344556677777777665542 232 33455566677777777777777777776 4553 7778888888888888
Q ss_pred HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCCchHHHHHHHHHhcCC
Q 006343 484 LAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLA-AQHLMELEPDSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 484 ~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (649)
+++|...+++.. ..| ++.+|..+...+...|+.++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887765 344 467888888888888888765554 689999999999999999988888775
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=3.7e-09 Score=101.37 Aligned_cols=204 Identities=11% Similarity=-0.024 Sum_probs=125.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 006343 365 DVSIQNSLVSLYSKCGNVVDAYRIFTNIDE--R-N---IVSYNSMISGFAQNGLGEEALNLFRKMKDEGL-VPN-QITFL 436 (649)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 436 (649)
++..+..+...+.+.|++++|...|+.+.. | + ...+..+..+|...|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455556666666777777776666652 2 2 34566666666666777777777666666421 111 23344
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHH
Q 006343 437 SVLSACNH--------VGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALL 507 (649)
Q Consensus 437 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 507 (649)
.+..++.. .|++++|+..|+.+.+. .|+ ......+..+....+.+ ...+..++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44445555 66666666666666653 232 22222221111111111 11245677
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHhhCCCccCCceeEE
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPDSA---TPYVVLSDLYSVI----------GKKRDGNRVRMKKKLKRIRKSPGCSWI 574 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~g~s~i 574 (649)
..+...|+++.|+..++++++..|+++ .++..++.+|... |++++|....+.+.+. .|
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p----- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP----- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT-----
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC-----
Confidence 888999999999999999999999754 4789999999977 8999999965544432 12
Q ss_pred EECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhh
Q 006343 575 ILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKE 609 (649)
Q Consensus 575 ~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 609 (649)
.+|...+....+..+...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 256777788888887777665
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=1.3e-07 Score=95.82 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=87.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcc-cHHH--
Q 006343 298 TWTAIISGFVNNEQYEEAFRWFIEMLRKDVR--P--NQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDV-SIQN-- 370 (649)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-- 370 (649)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+....+....++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4555666777777777777777776653211 1 1234455555566666677666666655543211111 1111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHH
Q 006343 371 ---SLVSLYSKCGNVVDAYRIFTNIDERN-------IVSYNSMISGFAQNGLGEEALNLFRKMKDE----GLVPNQ-ITF 435 (649)
Q Consensus 371 ---~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~ 435 (649)
..+..+...|+.++|...++....++ ...+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22334667777777777777665322 113455566666777777777777665442 111111 133
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 436 LSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 436 ~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
..+..++...|+.++|...++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555666666655555443
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=1.4e-08 Score=103.39 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=73.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCC----Cccc
Q 006343 297 VTWTAIISGFVNNEQYEEAFRWFIEMLR-----KDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNME----SDVS 367 (649)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 367 (649)
.++..+...|...|++++|+..|++..+ .. +....++..+..++...|+.+.|...+....+.... ....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3567777778888888888888877765 32 222445556666666667777776666665554221 1122
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 368 IQNSLVSLYSKCGN---VVDAYRIFTNIDER--NIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 368 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
.+..+...|...|+ +.+|...++..... ....+..+...|...|++++|...|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444445555555 56666666553321 122444555666666666666666665543
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.2e-09 Score=103.32 Aligned_cols=176 Identities=8% Similarity=-0.067 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 006343 382 VVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTL 461 (649)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 461 (649)
.+.....+....+.+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 4445555555555566677788888999999999999999998863 33456778888899999999999999998876
Q ss_pred cCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--Cch
Q 006343 462 YNIEPGPEHYAC-MVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS--ATP 536 (649)
Q Consensus 462 ~~~~p~~~~~~~-l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 536 (649)
..|+...... ....+.+.|+.++|.+.+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4566443333 3334677888888888888765 34557889999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 537 YVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
+..|+.+|...|+.++|.. .++.+.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999988 666654
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=2.8e-09 Score=117.11 Aligned_cols=169 Identities=8% Similarity=-0.107 Sum_probs=120.9
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 377 SKCGNVVDAYRIFTNID-----------ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 377 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
...|++++|.+.|++.. +.+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777777654 3455677777777888888888888888877752 33456666777777778
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHH
Q 006343 446 GLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLA 522 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 522 (649)
|++++|...|+...+ +.| +...+..+..+|.+.|++++ .+.+++.. ..| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888887776 345 36777778888888888887 77777654 333 466777777788888888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCc
Q 006343 523 AQHLMELEPDSATPYVVLSDLYSVIGKK 550 (649)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (649)
++++++++|+++.++..++.+|...|+.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 8888888887778888888887666653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=4.8e-09 Score=102.45 Aligned_cols=168 Identities=10% Similarity=-0.048 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNIDE-----RN----IVSYNSMISGFAQN-GLGEEALNLFRKMKDEGLVP-N---- 431 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~---- 431 (649)
.+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3455555666666666666665555431 11 23567777788885 88888888888877631110 1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh----
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGP-----EHYACMVDILGRAGSLAEAIDLINSMT-FEPPPG---- 501 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~---- 501 (649)
..++..+...+...|++++|+.+|+.......-.+.. ..|..++.++...|++++|...+++.. ..|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2456777778888888888888888877621111111 146677778888888888888888764 344321
Q ss_pred --HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCC
Q 006343 502 --VWGALLGAGR--THLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 502 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
.+..++.++. ..++++.|+..++++++++|...
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34668888888888888888443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=5.1e-08 Score=93.46 Aligned_cols=173 Identities=11% Similarity=-0.032 Sum_probs=105.5
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 385 AYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVP-NQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 385 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
|...|++.. .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555544 2344455566666777777777777777765544212 344555666667777777777777777765
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 006343 461 LYNIEP-----GPEHYACMVDI--LGRAG--SLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMEL- 529 (649)
Q Consensus 461 ~~~~~p-----~~~~~~~l~~~--l~~~g--~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 529 (649)
..| +..+...|..+ ....| +..+|..+|+++. ..|+...-..|++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345 23333444433 22233 7777777777765 2343222233444666778888888887777665
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 530 ---------EPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 530 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
+|+++.++.+++.++...|+ +|.++...+++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 67776666665
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=8.4e-10 Score=106.83 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNIDE-----------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDE------GLV 429 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 429 (649)
.++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|++.... .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444455555555555555555554331 12235566666666667777776666666543 111
Q ss_pred C-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-------
Q 006343 430 P-NQITFLSVLSACNHVGLVEEGFIYFKSMKTLY-----NIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT------- 495 (649)
Q Consensus 430 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~------- 495 (649)
| ...++..+...+...|++++|..+|+.+.+.. .-.| ....+..++.+|.+.|++++|.++++++.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 23455666666777777777777777666521 1122 24566677777777777777777776542
Q ss_pred ---CCCC-hhHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 496 ---FEPP-PGVWGALLGAGRTHLN------LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 496 ---~~~~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
..+. ...|..+.......+. +..+...++.+....|..+..+..++.+|...|++++|.++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1222 2344444433333332 23333333333334455566788888888888888888885443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=6.3e-09 Score=99.75 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc--ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hHHH
Q 006343 329 PNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESD--VSIQNSLVSLYSKCGNVVDAYRIFTNIDE--R-N---IVSY 400 (649)
Q Consensus 329 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~ 400 (649)
.+...+......+...|++++|...+..+++..+... ..++..+..+|.+.|++++|...|++... | + ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456677777888999999999999999998765421 56778889999999999999999998863 2 2 3467
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 006343 401 NSMISGFAQ--------NGLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY 471 (649)
Q Consensus 401 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (649)
..+..++.. .|++++|+..|++.++. .|+.. ....+ ..+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999986 34432 21111 111111110 01235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCCc-
Q 006343 472 ACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTH----------LNLDLAKLAAQHLMELEPDSAT- 535 (649)
Q Consensus 472 ~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 535 (649)
..++.+|.+.|++++|...++++. ..|+ ...+..++.++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567888889999999999888764 2333 34667777777755 8899999999999999998764
Q ss_pred --hHHHHHHHHHhcCCchH
Q 006343 536 --PYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 536 --~~~~l~~~~~~~g~~~~ 552 (649)
++..+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34556666655555444
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.1e-08 Score=86.26 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDIL 478 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l 478 (649)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+|+.+... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566666667777777777777766643 234455555666666666777777666666552 122344555555556
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006343 479 GRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 531 (649)
.+.|++++|.+.++++. .+.+..+|..++..+...|+++.|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 66666666665555543 223344555555555556666666666666655555
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=1.7e-09 Score=93.94 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=101.5
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCC
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLN 515 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~ 515 (649)
...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|.+.+++.. ..| ++.+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456678999999999987765 4554 6667789999999999999999999876 444 57899999999999999
Q ss_pred hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-H-HHHHh
Q 006343 516 LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-V-RMKKK 561 (649)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~-~~~~~ 561 (649)
+++|+..++++++++|+++.++..++.+|...|++++|.+ . .+.++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 3 45554
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=2.8e-08 Score=92.85 Aligned_cols=179 Identities=9% Similarity=-0.022 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHH
Q 006343 367 SIQNSLVSLYSKCGNVVDAYRIFTNIDE--RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQI----TFL 436 (649)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 436 (649)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|...|++++|+..|++.++.. |+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445566677777888888888877652 22 2456667777788888888888888877752 3321 233
Q ss_pred HHHHHhhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 006343 437 SVLSACNH------------------VGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFE 497 (649)
Q Consensus 437 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 497 (649)
.+..++.. .|+.++|+..|+.+.+. .|+ ...+.....+ +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 35566666666666552 233 2222111110 0000000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 006343 498 PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA---TPYVVLSDLYSVIGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 498 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (649)
......+...+...|+++.|+..++++++..|+++ .++..++.+|...|++++|.+..+.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456677889999999999999999999875 5689999999999999999998887776554
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=7.5e-09 Score=101.09 Aligned_cols=224 Identities=10% Similarity=0.027 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHh
Q 006343 314 EAFRWFIEMLRKDVRPNQLTLSSVLSASAA--TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTN 391 (649)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 391 (649)
+|.+++.+..+. .++....| .++ .. .+++++|...+..+ ...|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 456666666654 23322222 222 11 12377777776654 4567888999999988887
Q ss_pred cCC-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhcc-CcHHHHHHHHH
Q 006343 392 IDE-----RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PN----QITFLSVLSACNHV-GLVEEGFIYFK 456 (649)
Q Consensus 392 ~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~ 456 (649)
... .+ ..+|+.+...|...|++++|+..|++.++.... .+ ..++..+..+|... |++++|+.+|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 642 12 458899999999999999999999998763111 11 34778888889986 99999999999
Q ss_pred HhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh--------HHHHHHHHHHhcCChhHHHHHH
Q 006343 457 SMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPG--------VWGALLGAGRTHLNLDLAKLAA 523 (649)
Q Consensus 457 ~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~--------~~~~ll~~~~~~g~~~~a~~~~ 523 (649)
...+...-..+ ...+..++.+|.+.|++++|.+.+++.. ..|+.. .|..++.++...|+++.|+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98873211111 3568889999999999999999998764 333211 4677778888999999999999
Q ss_pred HHHhccCCCCCch-----HHHHHHHHH--hcCCchHHHHHH
Q 006343 524 QHLMELEPDSATP-----YVVLSDLYS--VIGKKRDGNRVR 557 (649)
Q Consensus 524 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~ 557 (649)
+++++++|+.... +..++..|. ..+++++|.+..
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999976653 344556664 345677766654
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=9.7e-09 Score=99.23 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----------RNIVSYNSMISGFAQNGLGEEALNLFRKMKDE------GL 428 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 428 (649)
..++..+...|...|++++|...|.+... ....+|..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555666666666776666666665431 12346777778888888888888888887764 11
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 006343 429 VPN-QITFLSVLSACNHVGLVEEGFIYFKSMKTLY------NIEPG-PEHYACMVDILGRAG------SLAEAIDLINSM 494 (649)
Q Consensus 429 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g------~~~~A~~~~~~~ 494 (649)
.|+ ..++..+..++...|++++|..+|+.+.+.. ...|. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 232 4567777778888888888888888877531 12232 334444444444333 344555555554
Q ss_pred C-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 495 T-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 495 ~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
. ..|+ ..++..+...+...|++++|...+++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 2232 4577888899999999999999999998753
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=9.3e-09 Score=94.77 Aligned_cols=125 Identities=7% Similarity=0.002 Sum_probs=99.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRA 481 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~ 481 (649)
+...|...|++++|+..|++.++.. +-+...+..+..++...|++++|...|+...+ +.|+ ...+..++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999863 34567888888899999999999999999988 4674 88899999988766
Q ss_pred CC--HHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 482 GS--LAEAIDLINSMTFEPPP--GVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 482 g~--~~~A~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
|. .+++...++... .|++ ..|..+..++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 445666666654 3443 34555666777889999999999999999994
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=5.5e-09 Score=93.46 Aligned_cols=74 Identities=9% Similarity=-0.010 Sum_probs=56.3
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCCchHHHH-HHHHH
Q 006343 487 AIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS--ATPYVVLSDLYSVIGKKRDGNR-VRMKK 560 (649)
Q Consensus 487 A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 560 (649)
|.+.+++.. ..| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|.. +++.+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 444554433 234 46788888888888999999999999999988865 4588889999999999998888 55544
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=5.8e-08 Score=93.09 Aligned_cols=181 Identities=10% Similarity=0.051 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006343 350 GSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----RNIVSYNSMISGFAQNGLGEEALNLFRKMK 424 (649)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 424 (649)
+...++...+.+ .++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444433 23344445677778888888888888887632 244567777888888999999999999987
Q ss_pred HcCCCC-----CHHHHHHHHHHh--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 425 DEGLVP-----NQITFLSVLSAC--NHVG--LVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 425 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
+. .| +..+...+..++ ...| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 56 356666666653 3334 888999999988763 3553333334447888999999999887543
Q ss_pred C-----------CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 496 F-----------EP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 496 ~-----------~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
. .| ++.+...++......|+ .|.+.++++.+..|+++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 13 45566566666666776 788999999999998766443
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=1.6e-08 Score=85.19 Aligned_cols=126 Identities=20% Similarity=0.196 Sum_probs=109.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGR 511 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~ 511 (649)
.+..+...+...|++++|..+|+.+.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...|..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566777888999999999999999873 23357788889999999999999999999875 3455778889999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
..|+++.|...++++++..|.++..+..++.+|...|++++|.+..+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999655543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=3.5e-08 Score=108.35 Aligned_cols=191 Identities=11% Similarity=0.011 Sum_probs=146.1
Q ss_pred HccCChhHHHHHHHHHH--------HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhc
Q 006343 342 AATATLNQGSQIHAHVV--------KMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQN 410 (649)
Q Consensus 342 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 410 (649)
...|+.++|...+..+. +.. +.+...+..+...|.+.|++++|...|++.. +.+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55667777777777666 322 2356778888889999999999999998876 45778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 006343 411 GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAID 489 (649)
Q Consensus 411 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~ 489 (649)
|++++|+..|++.++.. +-+...+..+..++...|++++ +..|+.+.+ +.|+ ...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999863 3346778888889999999999 999999887 4564 7889999999999999999999
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCCchHH
Q 006343 490 LINSMT-FEPP-PGVWGALLGAGRTHLN-----LDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 490 ~~~~~~-~~~~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.++++. ..|+ ...|..+..++...++ .+...++.+.+.++.|+++....
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 999987 5666 5677777777766554 34555555566666665555443
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=8.8e-09 Score=88.98 Aligned_cols=100 Identities=9% Similarity=-0.036 Sum_probs=87.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 463 NIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 463 ~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
.+.|+ ...+..+...+.+.|++++|.+.|++.. . +.++..|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45664 7778888999999999999999999876 3 4458899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHH-HHHHHhh
Q 006343 540 LSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 540 l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
++.+|...|++++|.+ +++.++-
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 5555543
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.4e-08 Score=84.89 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
+.+...+..|.+.|++++|.+.|++.. .+.+..+|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344445555555555555555555433 222344555555555555555555555555555555555555555555555
Q ss_pred cCCchHHHH
Q 006343 547 IGKKRDGNR 555 (649)
Q Consensus 547 ~g~~~~a~~ 555 (649)
.|++++|.+
T Consensus 94 ~~~~~~A~~ 102 (126)
T 4gco_A 94 MREWSKAQR 102 (126)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 555555555
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=1.1e-06 Score=92.04 Aligned_cols=202 Identities=9% Similarity=-0.027 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH-HHHHHhc
Q 006343 314 EAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDA-YRIFTNI 392 (649)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 392 (649)
.+..+|++++... +.+...|...+.-+...|+.+.|+.+++.+++. +.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 3455666655532 333445555555555666666666666666665 22222222 12221111111 1111111
Q ss_pred C------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccCcHHHHHHHHHHhH
Q 006343 393 D------------ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACN-HVGLVEEGFIYFKSMK 459 (649)
Q Consensus 393 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~ 459 (649)
. ......|...+....+.+..+.|..+|++. .. ...+...|......-. ..++++.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 111245777777777778888899999888 32 1223344432222111 2336888999998888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+.++ .++..+...++...+.|+.+.|..+++.+. .....|...+.--..+|+.+.+..++++.++
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7542 235566677888888889999999998874 3567788888777788888888887777764
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=1.7e-07 Score=86.56 Aligned_cols=171 Identities=9% Similarity=-0.081 Sum_probs=129.9
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHhH
Q 006343 385 AYRIFTNID-ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG----LVEEGFIYFKSMK 459 (649)
Q Consensus 385 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 459 (649)
|.+.|++.. ..++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. | +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3466777777788888888888888888888765 45566666666776 6 8899999998886
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 006343 460 TLYNIEPGPEHYACMVDILGR----AGSLAEAIDLINSMT-FEPP---PGVWGALLGAGRT----HLNLDLAKLAAQHLM 527 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 527 (649)
+ ..++..+..|..+|.. .+++++|.+++++.. ..|+ +..+..|...|.. .+|.++|+..++++.
T Consensus 81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5 2357777888888877 889999999998876 3442 6788888888887 789999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHhhCC
Q 006343 528 ELEPDSATPYVVLSDLYSVI-G-----KKRDGNRVRMKKKLKR 564 (649)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 564 (649)
+. |.++.++..|+.+|... | ++++|.+..+...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 66888999999999764 3 8899999655554443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=3.2e-08 Score=106.57 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=123.3
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 006343 379 CGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYF 455 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 455 (649)
.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888776 3456788899999999999999999999998863 334677888888999999999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhc---CChhHHHHHHHHHhcc
Q 006343 456 KSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTH---LNLDLAKLAAQHLMEL 529 (649)
Q Consensus 456 ~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 529 (649)
+...+ +.| +...+..+..+|.+.|++++|.+.+++.. . +.+...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99887 345 47889999999999999999999999865 3 34577888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 006343 530 EPDSATPYVVLS 541 (649)
Q Consensus 530 ~p~~~~~~~~l~ 541 (649)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=2.5e-08 Score=107.46 Aligned_cols=148 Identities=18% Similarity=0.094 Sum_probs=113.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~ 488 (649)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+ +.|+ ...+..+..+|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988752 33467788888899999999999999999987 4564 888999999999999999999
Q ss_pred HHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CCchHHHH-HHHHHh
Q 006343 489 DLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVI---GKKRDGNR-VRMKKK 561 (649)
Q Consensus 489 ~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~-~~~~~~ 561 (649)
+.+++.. . +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|... |++++|.+ +.+.++
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999865 3 445779999999999999999999999999999999999999999999999 99999988 444443
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.4e-08 Score=87.71 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=83.2
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 464 IEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 464 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
+.|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4553 6677778888999999999999998765 344677888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHH-HHHHh
Q 006343 541 SDLYSVIGKKRDGNRV-RMKKK 561 (649)
Q Consensus 541 ~~~~~~~g~~~~a~~~-~~~~~ 561 (649)
+.+|...|++++|.+. .+.++
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999994 44444
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=3.5e-08 Score=82.53 Aligned_cols=108 Identities=8% Similarity=-0.008 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHH
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGA 509 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~ 509 (649)
..+......+.+.|++++|+..|+...+ +.| +...|..+..+|.+.|++++|++.+++.. . +.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3455666677788888888888887776 345 47788888888888888888888888765 3 4457789999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDL 543 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (649)
+...|++++|+..++++++++|+++.++..|+++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999988888765
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=2.2e-06 Score=82.99 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--ChhHHHHHHHHHHHhCCCCcccHHHHHHHHH----Hhc---
Q 006343 310 EQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASAATA--TLNQGSQIHAHVVKMNMESDVSIQNSLVSLY----SKC--- 379 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 379 (649)
...++|++++.+++.. .|+.. .++.--.++...+ .++++...+..++...++ +..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3335677777776663 44443 3344444444555 666666666666665544 444454444444 344
Q ss_pred CCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc------H
Q 006343 380 GNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGE--EALNLFRKMKDEGLVPNQITFLSVLSACNHVGL------V 448 (649)
Q Consensus 380 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 448 (649)
++++++..+++.+. ++|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 56777777777665 456667777766677777776 7777777777764 3345555554444555554 6
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCChhHHHHHHHHHHhcCChhHHHH
Q 006343 449 EEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAE-AIDLINSMT-F----EPPPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
++++++++.+.. ..| |...|+.+..++.+.|+..+ +.++.+++. . ..++..+..++..+...|+.++|++
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 777777777665 234 46666667777777666443 444555543 1 2345566667777777777777777
Q ss_pred HHHHHhc-cCCCCCchHHHHH
Q 006343 522 AAQHLME-LEPDSATPYVVLS 541 (649)
Q Consensus 522 ~~~~~~~-~~p~~~~~~~~l~ 541 (649)
+++++.+ .+|-....|...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 7777775 6776555554433
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=7.8e-08 Score=85.84 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H-h
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLS-A-C 442 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a-~ 442 (649)
....+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+... ..+.. . +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~-~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY-KSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH-HHHHHHHHH
Confidence 34567778889999999999999887 456778999999999999999999999998765 344332 22222 1 1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---hhHHHHHHHHHHhcCChh
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP---PGVWGALLGAGRTHLNLD 517 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~---~~~~~~ll~~~~~~g~~~ 517 (649)
...+...+|...|+...+ ..|+ ...+..+..+|.+.|++++|...++++. ..|+ ...|..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 222233457888888877 4564 8889999999999999999999998764 4554 558899999999999999
Q ss_pred HHHHHHHHHhc
Q 006343 518 LAKLAAQHLME 528 (649)
Q Consensus 518 ~a~~~~~~~~~ 528 (649)
+|...+++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998864
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.3e-06 Score=84.61 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=172.4
Q ss_pred ChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChHHHHHHHHHH----Hhc---CCH
Q 006343 346 TLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG--NVVDAYRIFTNID---ERNIVSYNSMISGF----AQN---GLG 413 (649)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~ 413 (649)
..++|......++..++. +..+|+.--..+...| +++++++.++.+. +.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345788888888888766 6677888888888888 9999999999887 46677888766666 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHH--HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC------H
Q 006343 414 EEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVE--EGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGS------L 484 (649)
Q Consensus 414 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~------~ 484 (649)
++++.+++++.+.. +-|...+..-...+.+.|.++ +++++++.+.+. .| |...|+.-..++.+.|+ +
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999874 556777777777777888888 999999999973 45 56777777777777777 8
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHhcCC-hhHHHHHHHHHhccC---CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 006343 485 AEAIDLINSMT--FEPPPGVWGALLGAGRTHLN-LDLAKLAAQHLMELE---PDSATPYVVLSDLYSVIGKKRDGNRVRM 558 (649)
Q Consensus 485 ~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (649)
++++++++++. .+-|...|+-+...+...|+ .+.....++++++++ |.++.++..++.+|...|+.++|.++.+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999998765 45668899999999988877 455667888888877 8899999999999999999999999777
Q ss_pred HHhh
Q 006343 559 KKKL 562 (649)
Q Consensus 559 ~~~~ 562 (649)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.6e-07 Score=91.23 Aligned_cols=131 Identities=7% Similarity=-0.035 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHH
Q 006343 429 VPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGAL 506 (649)
Q Consensus 429 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 506 (649)
+.+...+..+...+...|++++|...|+.+.. ..| +...+..++.+|.+.|++++|.+.++++. ..|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 44456677778888999999999999999987 456 48889999999999999999999999987 56766544433
Q ss_pred HH-HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 507 LG-AGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 507 l~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
.. .+...++.+.|+..++++++.+|+++..+..|+.+|...|++++|.. +++.++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 36678889999999999999999999999999999999999999999 5555553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=2.9e-07 Score=90.46 Aligned_cols=220 Identities=10% Similarity=0.019 Sum_probs=155.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006343 308 NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYR 387 (649)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (649)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877631 111 0 11146677776666543 556788899999988
Q ss_pred HHHhcCC-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhhccCcHHHHHH
Q 006343 388 IFTNIDE-----RN----IVSYNSMISGFAQNGLGEEALNLFRKMKDEGL---VPN--QITFLSVLSACNHVGLVEEGFI 453 (649)
Q Consensus 388 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 453 (649)
.|.+... .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877652 12 34788889999999999999999998765311 122 3567777788888 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----hhHHHHHHHHHHhcCChhHHHH
Q 006343 454 YFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-F---EPP----PGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 454 ~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
+|+.....+.-..+ ...+..+..+|.+.|++++|.+.+++.. . .++ ...+..++..+...|+++.|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 4678889999999999999999998764 1 122 2255666667778899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCCchHHHH
Q 006343 522 AAQHLMELEPDSATP-----YVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 555 (649)
.+++++ ++|+.... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976544 34455555 4566555544
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=2.5e-07 Score=85.08 Aligned_cols=184 Identities=13% Similarity=0.051 Sum_probs=114.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK 378 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (649)
+......+.+.|++++|+..|++.++. .|+......... ... .....+.....+...|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcc--------------hhhhhHHHHHHHHHHHHH
Confidence 344556677888888888888888774 444322111100 000 000112233457778888
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc--HHHHHH
Q 006343 379 CGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL--VEEGFI 453 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~ 453 (649)
.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|. .+.+..
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888888765 4567788888888888888888888888888753 3345566666666655543 334455
Q ss_pred HHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHH
Q 006343 454 YFKSMKTLYNIEPGP--EHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLG 508 (649)
Q Consensus 454 ~~~~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~ 508 (649)
.++... .|++ ..+..+...+...|++++|...+++.. ..|+......+..
T Consensus 146 ~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 554433 3433 234445666777888888888888765 6777665555444
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=2.9e-07 Score=84.81 Aligned_cols=144 Identities=8% Similarity=-0.052 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHH
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVE 449 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 449 (649)
..+...+...|++++|...|++..+++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555566666666666666655555566666666666666666666666655542 223444555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 450 EGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
+|...|+...+. .|+..... +...| +...|+ ..+|..+..++...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555541 22110000 00000 011222 36788888889999999999999999999
Q ss_pred cCCCC
Q 006343 529 LEPDS 533 (649)
Q Consensus 529 ~~p~~ 533 (649)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99965
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=2.4e-07 Score=85.36 Aligned_cols=123 Identities=7% Similarity=-0.111 Sum_probs=98.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHh
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRT 512 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~ 512 (649)
+..+...+...|++++|...|+.. +.|+...+..++..|.+.|++++|.+.+++.. .+.+...|..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344455566777888888777655 34677778888888888888888888887754 34456788889999999
Q ss_pred cCChhHHHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 513 HLNLDLAKLAAQHLMELEPDSA----------------TPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+..+...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999888877 8999999999999999999996555544
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=6.7e-07 Score=83.32 Aligned_cols=184 Identities=10% Similarity=-0.016 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc--ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChH---HHHH
Q 006343 331 QLTLSSVLSASAATATLNQGSQIHAHVVKMNMESD--VSIQNSLVSLYSKCGNVVDAYRIFTNIDE--R-NIV---SYNS 402 (649)
Q Consensus 331 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 402 (649)
...+......+...|++++|...+..+++..+... ...+..+..+|.+.|++++|...|++..+ | +.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555666778899999999999999998765422 35677889999999999999999999762 3 222 4555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 403 MISGFAQ------------------NGLGEEALNLFRKMKDEGLVPNQIT-FLSVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 403 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
+..++.. .|+.++|+..|+++++. .|+... ..... ..+ .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHH-----
Confidence 5555554 57899999999999985 455432 21111 000 011111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 006343 464 IEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPP----GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 464 ~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
......++..|.+.|++++|...++++. ..|+. ..+..+..++...|+.++|+..++++....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1122456788999999999999998865 33442 46888889999999999999999999999997654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=4.4e-07 Score=88.45 Aligned_cols=163 Identities=9% Similarity=-0.040 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----h
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-----ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----P 468 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 468 (649)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...|+.......-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677888999999999999988875322111 12334455667888999999999888753211112 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------C
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT----FEPP-----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD------S 533 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 533 (649)
..|..++..|...|++++|.+.++++. ..|+ ..++..++..|...|++++|+..+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999998754 1222 257888999999999999999999999986542 1
Q ss_pred CchHHHHHHHHHhcCCchHH-HH-HHHHH
Q 006343 534 ATPYVVLSDLYSVIGKKRDG-NR-VRMKK 560 (649)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a-~~-~~~~~ 560 (649)
+.+|..++.+|...|++++| .. +.+.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56789999999999999999 66 55544
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=2.1e-07 Score=77.76 Aligned_cols=118 Identities=13% Similarity=0.006 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGA 509 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~ 509 (649)
...+..+...+...|++++|..+|+..... .+.+...+..++..+...|++++|.+.+++.. .+.+...|..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555556666677777777777776652 12246677777777788888888888777654 23446788888889
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKR 551 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (649)
+...|+++.|...+++++++.|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999988764
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=1.6e-06 Score=84.43 Aligned_cols=159 Identities=10% Similarity=-0.027 Sum_probs=118.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 006343 402 SMISGFAQNGLGEEALNLFRKMKDEGL-VPNQI----TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYA 472 (649)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 472 (649)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+.+|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999887421 22221 2334556667788999999999998873222223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-----CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchH
Q 006343 473 CMVDILGRAGSLAEAIDLINSMT-----FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS------ATPY 537 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 537 (649)
.++..|...|++++|.+.++++. .+.+ ..++..++..|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888764 1112 2377889999999999999999999999866533 5678
Q ss_pred HHHHHHHHhcCC-chHHHH-HHHHH
Q 006343 538 VVLSDLYSVIGK-KRDGNR-VRMKK 560 (649)
Q Consensus 538 ~~l~~~~~~~g~-~~~a~~-~~~~~ 560 (649)
..++.+|...|+ +++|.+ +.+.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599998 44444
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=2.6e-07 Score=76.38 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAG 510 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~ 510 (649)
..+..+...+...|++++|..+|+.+.+. .+.+...+..++..+.+.|++++|..+++++. .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666552 12245666677777777777777777777654 334567788888889
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIG 548 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (649)
...|+++.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998988888887654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.6e-07 Score=80.44 Aligned_cols=97 Identities=7% Similarity=-0.076 Sum_probs=80.2
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 464 IEPG-PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 464 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
+.|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4453 5566677888888999999999888765 344577888888899999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 006343 541 SDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~ 560 (649)
+.+|...|++++|.+..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999954443
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=2.1e-07 Score=78.12 Aligned_cols=115 Identities=8% Similarity=-0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLG 508 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~ 508 (649)
...+..+...+...|++++|..+|+...+ ..| +...+..++.++...|++++|.+.+++.. .+.+...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455555566666666666666666654 233 45666667777777777777777776654 2345678888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGK 549 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (649)
.+...|++++|+..++++++++|++...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999887764
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=6e-08 Score=93.94 Aligned_cols=190 Identities=8% Similarity=-0.083 Sum_probs=124.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSAC 442 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 442 (649)
...+..+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..+++.++.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455666777777888888888887664 3466778888888888888888888888877652 33456677777788
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
...|++++|...|+...+. .|+ ...+...+....+.++...... .......++..+...+ ..+ ..|+.+.|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 8888888888888877652 232 1111112222222222222222 2223334455444444 333 2689999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHhh
Q 006343 522 AAQHLMELEPDSATPYVVLSDLYSVI-GKKRDGNRVRMKKKL 562 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 562 (649)
.++++++++|++......+..++... +++++|.+++....+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998887777888777776 778889887665544
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=1.2e-06 Score=80.81 Aligned_cols=172 Identities=8% Similarity=-0.115 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 006343 350 GSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID-ERNIVSYNSMISGFAQNG----LGEEALNLFRKMK 424 (649)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 424 (649)
|...+....+.| ++..+..|..+|...+++++|...|++.. ..+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 55666677777777788888888887765 3456677777777776 5 7888888888887
Q ss_pred HcCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHh
Q 006343 425 DEGLVPNQITFLSVLSACNH----VGLVEEGFIYFKSMKTLYNIEPG---PEHYACMVDILGR----AGSLAEAIDLINS 493 (649)
Q Consensus 425 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~l~~----~g~~~~A~~~~~~ 493 (649)
+.| +...+..+...+.. .+++++|+.+|+...+ ..|. +..+..|..+|.. .++.++|.+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566666666766 7889999999988775 3453 7788888888888 7889999999988
Q ss_pred CC-CCCChhHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 006343 494 MT-FEPPPGVWGALLGAGRTH-L-----NLDLAKLAAQHLMELEP 531 (649)
Q Consensus 494 ~~-~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 531 (649)
.. ..+++..+..|...|... | |.++|+..++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 65 335666777788777643 3 89999999999988754
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.9e-07 Score=75.99 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
...+..++..+.+.|++++|.+.+++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667777788888888888887754 33456788888888888889999999999999999988888889999999
Q ss_pred hcCCchHHHHHHHHH
Q 006343 546 VIGKKRDGNRVRMKK 560 (649)
Q Consensus 546 ~~g~~~~a~~~~~~~ 560 (649)
..|++++|.+..+..
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 999999988844433
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=1.6e-07 Score=93.54 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677888888889999999998888765 34457789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHH
Q 006343 546 VIGKKRDGNR-VRMKK 560 (649)
Q Consensus 546 ~~g~~~~a~~-~~~~~ 560 (649)
..|++++|.+ +.+.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999955 43333
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=3.6e-07 Score=80.20 Aligned_cols=125 Identities=6% Similarity=-0.079 Sum_probs=90.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGR 511 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~ 511 (649)
.+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|.+.+++.. .+.+...|..++..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555566666777777776666652 12246667777777777777777777777654 2345678888888899
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHH--HHHHHhcCCchHHHHHHHHH
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVVL--SDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 560 (649)
..|++++|...+++++++.|+++..+..+ +..+...|++++|.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999999999888887444 44488889999999865544
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=2.9e-06 Score=88.85 Aligned_cols=362 Identities=11% Similarity=0.035 Sum_probs=186.7
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccCC-hHHHHHHHHhccc--
Q 006343 23 IYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVGR-CEEAARIFEAMVE-- 99 (649)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~-- 99 (649)
++.|+.+|+... ..+-. |+++.+..+|++.....|+...|..-+.-..+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 666666666543 22211 88999999999988877888888877777666653 3445666766542
Q ss_pred ----CChhHHHHHHHHHHh----CCChhHHHHHhccCCCCCcccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCh
Q 006343 100 ----KDVVAWGSMVDGYCK----KGRVIEAREIFDKMPEKNVVAWTAMVDGYMK---VDCFEDGFDLFLSMRRGGMAFNS 168 (649)
Q Consensus 100 ----~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 168 (649)
.+..+|...+..+.. .|+++.++++|++...-....+..+-..|.. ......+..+..+..
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-------- 150 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-------- 150 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--------
Confidence 355677777776542 4567788888887754112222222222211 111111222211110
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CChhhHH
Q 006343 169 ITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLG--F-----MDEANKVFSMMSK---RDAVSWN 238 (649)
Q Consensus 169 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~ 238 (649)
+.+..|+.++..+...--..+...|...++.-...+ - .+.+..+|++... .+...|.
T Consensus 151 -------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~ 217 (493)
T 2uy1_A 151 -------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYF 217 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 111222222222221100012223333333221110 0 1223344444332 2344555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-CCh-hHHHHHHHHHHcCCChHH-HHHHHhhCC------------CCChhhHHHHH
Q 006343 239 SLISGYVHNGEIEEAYRLFERMPG-KDF-VSWTTMITGFSSKGNLEK-SIELFNMMP------------EKDDVTWTAII 303 (649)
Q Consensus 239 ~li~~~~~~g~~~~A~~~~~~m~~-~~~-~~~~~li~~~~~~g~~~~-A~~~~~~~~------------~~~~~~~~~li 303 (649)
..+.-+.+.|+.++|..+|++... |.. ..+. .|+...+.++ ...+.+... ......|...+
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 555555666666666666654322 111 1111 1111111111 111111110 00124566677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006343 304 SGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAA-TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNV 382 (649)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 382 (649)
....+.+..+.|..+|.+. +. ...+...|......-.. .++.+.|+.+++...+.... ++..+...++...+.|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCH
Confidence 7776777888888888888 32 12233333322211111 23688888888887776432 345566677777888888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 383 VDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
+.|+.+|+.+. .....|...+.--..+|+.+.+.++++++..
T Consensus 371 ~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888874 3566777777777777888888887777764
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.1e-07 Score=82.11 Aligned_cols=106 Identities=11% Similarity=-0.009 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLG 508 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~ 508 (649)
...+..+...+...|++++|...|+.... +.| +...|..+..+|.+.|++++|.+.+++.. . +.++..|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34455566677788888888888888776 345 57777888888888888888888888765 3 345678888899
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
++...|++++|+..+++++++.|+++......
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 99999999999999999999999877664433
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=3.2e-07 Score=90.14 Aligned_cols=195 Identities=9% Similarity=0.011 Sum_probs=147.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006343 344 TATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKM 423 (649)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 423 (649)
.|++++|..++..+.+.... . .+...++++.|...|.. ....|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888877764321 1 01115788888888765 356788999999999999988
Q ss_pred HHcCC---CC-C-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 424 KDEGL---VP-N-QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 424 ~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
.+... .+ . ..+|..+...|...|++++|+..|+.....+.-..+ ..++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76321 11 1 347788888899999999999999988764321111 4678889999988 9999999999876
Q ss_pred C-CC---CC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 495 T-FE---PP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT------PYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 495 ~-~~---~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
. .. .+ ..++..+...+...|++++|+..+++++++.|++.. ++..++.++...|++++|....+..
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 11 11 457888899999999999999999999998775542 6778888999999999999954433
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=6.8e-06 Score=79.94 Aligned_cols=158 Identities=10% Similarity=-0.063 Sum_probs=120.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Ch------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 006343 372 LVSLYSKCGNVVDAYRIFTNIDER---NI------VSYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PN----QITFLS 437 (649)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 437 (649)
.+..+...|++++|...+++.... +. ..+..+...+...|++++|+..|++....... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999986531 11 12334666677788999999999999984333 23 236888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-hhHHH
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYN----IEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-------FEPP-PGVWG 504 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 504 (649)
+..+|...|++++|..+|+.+.+... ..|. ...|..++..|.+.|++++|.+.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999885321 1222 4578889999999999999999998754 1122 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 006343 505 ALLGAGRTHLN-LDLAKLAAQHLMEL 529 (649)
Q Consensus 505 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 529 (649)
.++.++...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999999873
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=4e-07 Score=81.15 Aligned_cols=116 Identities=8% Similarity=0.017 Sum_probs=74.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHH-HHhcCCh--h
Q 006343 443 NHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGA-GRTHLNL--D 517 (649)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~-~~~~g~~--~ 517 (649)
...|++++|...++..... -+.+...+..++.+|...|++++|...+++.. . +.+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666552 12245666677777777777777777776654 2 3345566666666 6677776 7
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 518 LAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
.|+..++++++.+|+++..+..++.+|...|++++|....+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 7778888887777777777777778888888888877744443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=5e-07 Score=80.49 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=99.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCCH-
Q 006343 408 AQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDI-LGRAGSL- 484 (649)
Q Consensus 408 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-l~~~g~~- 484 (649)
...|++++|+..+++..+.. +.+...+..+..++...|++++|..+|+.+.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888888888887763 445677778888888899999999999888773 34 57778888888 7788998
Q ss_pred -HHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 485 -AEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 485 -~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
++|...++++. ..| +...|..+...+...|+++.|+..++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999988765 334 477888899999999999999999999999999886654433
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=2e-07 Score=88.20 Aligned_cols=136 Identities=11% Similarity=-0.065 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 006343 400 YNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG--PEHYACMVDI 477 (649)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 477 (649)
+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344566677788888888888777654 355545555555677888888888888755431 0111 2356778888
Q ss_pred HHhcCCHHHHHHHHHhCCCC---CC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 478 LGRAGSLAEAIDLINSMTFE---PP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~~~---~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
+.+.|++++|+..+++.... |. ...+..+..+++..|+.++|...++++++.+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 89999999999998876422 43 336777888888999999999999999999996 5544444
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=4.2e-07 Score=78.37 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=70.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAG 510 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~ 510 (649)
.+..+..++...|++++|..+|+.+.. +.| +...|..+..+|.+.|++++|.+.+++.. ..| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555566667777777777777666 345 36677777777777788888777777654 333 466788888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCC
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDS 533 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~ 533 (649)
...|++++|+..+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888854
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=8.3e-07 Score=71.71 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCchHHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD--SATPYVVLSDL 543 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 543 (649)
...+..++..+.+.|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5666777788888888888888887754 3345677888888888889999999999999999888 88888899999
Q ss_pred HHhc-CCchHHHHHHHHHh
Q 006343 544 YSVI-GKKRDGNRVRMKKK 561 (649)
Q Consensus 544 ~~~~-g~~~~a~~~~~~~~ 561 (649)
|... |++++|.+..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999 99999988554443
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=3.5e-07 Score=75.68 Aligned_cols=92 Identities=17% Similarity=0.043 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
..+..++..+.+.|++++|...+++.. ..| +...|..+..++...|+.++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667788889999999999998875 334 577888888899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHH
Q 006343 547 IGKKRDGNRVRMKK 560 (649)
Q Consensus 547 ~g~~~~a~~~~~~~ 560 (649)
.|++++|....+..
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999954444
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.9e-06 Score=70.27 Aligned_cols=109 Identities=10% Similarity=-0.007 Sum_probs=73.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGR 511 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~ 511 (649)
.+..+...+...|++++|...|+..... .+.+...+..++..+.+.|++++|...+++.. .+.+...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555556666666666666666552 12245666666677777777777777766543 2334667777888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
..|+++.|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888888888888888888888877777766654
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1.3e-06 Score=76.78 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLG 508 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~ 508 (649)
...+..+...+...|++++|+.+|+...+ +.| +...|..+..+|.+.|++++|.+.+++.. ..| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666677777777777777777776 344 47777888888888888888888888765 334 4778999999
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 006343 509 AGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDL 543 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (649)
++...|++++|+..++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=8e-07 Score=75.92 Aligned_cols=107 Identities=8% Similarity=-0.016 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAG 510 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~ 510 (649)
.+..+...+...|++++|..+|+.... ..| +...|..+..+|.+.|++++|...+++.. . +.++..|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 444555566777788888888777776 344 46777778888888888888888887765 3 34466788888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 006343 511 RTHLNLDLAKLAAQHLMELEPDSATPYVVLSDL 543 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (649)
...|++++|+..+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999887766555443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2.4e-06 Score=80.82 Aligned_cols=180 Identities=9% Similarity=-0.053 Sum_probs=136.0
Q ss_pred hcCCHHHHHHHHHhcC---CCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 006343 378 KCGNVVDAYRIFTNID---ERNIVSYNSM-------ISGFAQNGLGEEALNLFRKMKDEGLVPNQ--------------- 432 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 432 (649)
..++...|.+.|.+.. +.....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5688899999998876 3455688877 4666666666666666665544 23321
Q ss_pred -------HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCh----h
Q 006343 433 -------ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPP----G 501 (649)
Q Consensus 433 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~----~ 501 (649)
.....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677889999999999988775 3465336667778999999999999999876544433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLMELE--PD-SATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
++..+..++...|++++|+..++++.+-. |. .+.....++.++.+.|+.++|..+.+.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888999999999999999999998643 54 445788999999999999999996666654
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.1e-06 Score=73.43 Aligned_cols=111 Identities=11% Similarity=-0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHH
Q 006343 433 ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGAL 506 (649)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l 506 (649)
..+..+...+...|++++|..+|+...+ ..|+ ...+..+...|...|++++|.+.+++.. . +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555555543 3343 4455556666666666666666666543 2 2346677777
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
..++...|++++|...++++++++|++...+..+..+...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7788888888888888888888888877777766666543
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=2.9e-05 Score=75.62 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=144.8
Q ss_pred cCCCHH-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCC----------hhHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006343 308 NNEQYE-EAFRWFIEMLRKDVRPNQLT-LSSVLSASAATAT----------LNQGSQIHAHVVKMNMESDVSIQNSLVSL 375 (649)
Q Consensus 308 ~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (649)
+.|.++ +|++++..++.. .|+..| ++.--..+...+. ++++..++..+....++ +..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344443 677777777663 454433 2221111111111 45666777777776655 66677776667
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----
Q 006343 376 YSKCG--NVVDAYRIFTNID---ERNIVSYNSMISGFAQNGL-GEEALNLFRKMKDEGLVPNQITFLSVLSACNHV---- 445 (649)
Q Consensus 376 ~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---- 445 (649)
+.+.| .++++..+++.+. +.|..+|+--.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 77777 4788888888776 4677788877777777777 588888888888864 34555555544444333
Q ss_pred ----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc-----------CCHHHHHHHHHhCC-CCCChhH
Q 006343 446 ----------GLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA-----------GSLAEAIDLINSMT-FEPPPGV 502 (649)
Q Consensus 446 ----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~-----------g~~~~A~~~~~~~~-~~~~~~~ 502 (649)
+.+++++++++.... +.| |...|+-+-.++.+. +.++++++.++++. ..||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 557888888888776 345 466666665566555 46788888888765 56665 5
Q ss_pred HHHHHHHHH-----hcCChhHHHHHHHHHhccCCCCCchHHHHHHH
Q 006343 503 WGALLGAGR-----THLNLDLAKLAAQHLMELEPDSATPYVVLSDL 543 (649)
Q Consensus 503 ~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (649)
|..+..+.. ..|..++....+.+++++||...+.|.-+..-
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 653333221 35667788888888888999666666655443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.2e-06 Score=73.02 Aligned_cols=109 Identities=11% Similarity=-0.063 Sum_probs=76.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAG 510 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~ 510 (649)
.+......+...|++++|+..|+...+ +.| +...|..++.+|.+.|++++|.+.+++.. ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444455556666777777777766665 234 36667777777777777777777777654 233 466788888888
Q ss_pred HhcCChhHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 006343 511 RTHLNLDLAKLAAQHLMELE------PDSATPYVVLSDLYS 545 (649)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 545 (649)
...|++++|+..++++++++ |+++.....+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888999999999998888 777766666665543
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1.5e-06 Score=73.51 Aligned_cols=93 Identities=9% Similarity=-0.086 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
+...+..++..+...|++++|...+++.. .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46667777777777788888877777654 2334667777888888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHH
Q 006343 545 SVIGKKRDGNRVRMK 559 (649)
Q Consensus 545 ~~~g~~~~a~~~~~~ 559 (649)
...|++++|....+.
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 88 LEMESYDEAIANLQR 102 (137)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 888888888884443
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=4.7e-06 Score=75.72 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=39.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCcHH
Q 006343 378 KCGNVVDAYR---IFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE----GLVPN-QITFLSVLSACNHVGLVE 449 (649)
Q Consensus 378 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 449 (649)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++.... +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 443322233445566666666666666666666665541 11111 123334444445555555
Q ss_pred HHHHHHHHhHH
Q 006343 450 EGFIYFKSMKT 460 (649)
Q Consensus 450 ~a~~~~~~~~~ 460 (649)
+|..+++....
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 150
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=2.9e-06 Score=88.64 Aligned_cols=114 Identities=9% Similarity=-0.019 Sum_probs=57.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 006343 407 FAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLA 485 (649)
Q Consensus 407 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~ 485 (649)
+.+.|++++|++.|++.++.. +.+...+..+..++...|++++|+..+++..+ +.|+ ...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555566666666555541 22344555555555566666666666655554 2342 555555666666666666
Q ss_pred HHHHHHHhCC-CCC-ChhHHHHHHHH--HHhcCChhHHHHHHH
Q 006343 486 EAIDLINSMT-FEP-PPGVWGALLGA--GRTHLNLDLAKLAAQ 524 (649)
Q Consensus 486 ~A~~~~~~~~-~~~-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 524 (649)
+|.+.+++.. ..| +...+..+..+ +...|++++|+..++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665543 222 23344444444 455566666666666
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=3.1e-06 Score=76.97 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=56.6
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCCH
Q 006343 343 ATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE---------RNIVSYNSMISGFAQNGLG 413 (649)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~ 413 (649)
..|++++|..++..+.. .......++..+...|...|++++|...|++... ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566666664333322 2223445556666666666666666666655431 1223455556666666666
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 414 EEALNLFRKMKDE----GLVP--NQITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 414 ~~A~~~~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
++|+..+++..+. +-.| ....+..+...+...|++++|..+++...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666665442 1011 01223344444455555555555555443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=1.2e-06 Score=73.07 Aligned_cols=92 Identities=2% Similarity=-0.074 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-------hHHHH
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT-------PYVVL 540 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 540 (649)
.+..++..+.+.|++++|++.|++.. .. .+...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34556677777777777777777654 33 34667777777777888888888888888887776553 45667
Q ss_pred HHHHHhcCCchHHHH-HHHHHh
Q 006343 541 SDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 541 ~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
+.+|...|++++|++ +.+.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 777777888888887 444444
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=1.4e-06 Score=76.43 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=84.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
+...+..+...+.+.|++++|.+.+++.. . +.+...|..+..++...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36678889999999999999999999875 3 446789999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHH
Q 006343 545 SVIGKKRDGNRVRMKK 560 (649)
Q Consensus 545 ~~~g~~~~a~~~~~~~ 560 (649)
...|++++|.+..+..
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 9999999999954443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=3e-06 Score=69.01 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
....+..++..+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35567788899999999999999999875 3446788899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 006343 545 SVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~ 562 (649)
...|++++|.+..+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999996655544
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.38 E-value=4.5e-06 Score=81.19 Aligned_cols=161 Identities=9% Similarity=-0.063 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDE---RNI------VSYNSMISGFAQNGLGEEALNLFRKMKDEGLV---PN--QIT 434 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~t 434 (649)
+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++....... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677888888888888765431 111 22344556677788999999999988763221 11 347
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------Chh
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-----PEHYACMVDILGRAGSLAEAIDLINSMT-FEP-------PPG 501 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-------~~~ 501 (649)
+..+...|...|++++|..+|+.+.+.....|+ ...+..++..|.+.|++++|.+.+++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 778888899999999999999988743222333 2578889999999999999999988753 111 156
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 006343 502 VWGALLGAGRTHLNLDLA-KLAAQHLMEL 529 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 529 (649)
++..++..+...|+.++| ...+++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888899999999999 7778888763
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=2e-06 Score=78.15 Aligned_cols=161 Identities=12% Similarity=-0.007 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHH
Q 006343 374 SLYSKCGNVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEE 450 (649)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 450 (649)
......|+++.|.+.++.... .....|..+...+...|++++|+..|++.++. .|+...+... ..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 334444566666655553332 23345666677777777777777777777764 2221100000 0000
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006343 451 GFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 528 (649)
-. .. .....+..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++
T Consensus 82 ~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 KK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00 00 012566677788888888888888887764 334577888899999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 529 LEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
++|+++.++..++.++...|+.+++.+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877774
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=0.00011 Score=71.75 Aligned_cols=222 Identities=12% Similarity=0.041 Sum_probs=117.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc-C-
Q 006343 305 GFVNNEQYEEAFRWFIEMLRKDVRPNQL-TLSSVLSASAATA-TLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKC-G- 380 (649)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 380 (649)
...+.+..++|++++.+++.. .|+.. .++.--.++...+ .++++..++..+.+..++ +..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334444556677777777663 44433 3333333444445 366666666666665544 455555555555554 5
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc--
Q 006343 381 NVVDAYRIFTNIDE---RNIVSYNSMISGFAQNGLGE--------EALNLFRKMKDEGLVPNQITFLSVLSACNHVGL-- 447 (649)
Q Consensus 381 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 447 (649)
+.+++.++++.+.. +|..+|+--.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 66777777777663 45556665555554444444 6777777777653 3345555555555555553
Q ss_pred -----HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCC-----
Q 006343 448 -----VEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSL--------------------AEAIDLINSMTF----- 496 (649)
Q Consensus 448 -----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~--------------------~~A~~~~~~~~~----- 496 (649)
+++++++++.+.. +.| |...|.-+-.++.+.|+. .+..++..++..
T Consensus 219 ~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 5666666666665 234 355555555555555542 233333333321
Q ss_pred ---CCChhHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCC
Q 006343 497 ---EPPPGVWGALLGAGRTHLNLDLAKLAAQHLM-ELEPDS 533 (649)
Q Consensus 497 ---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~ 533 (649)
.+.+..+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 1334445555555555555566666666554 455533
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=3e-06 Score=88.18 Aligned_cols=142 Identities=9% Similarity=0.004 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 397 IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
...|..+...|.+.|++++|+..|++.++. .|+...+ . .++..+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446666777777777777777777777663 1221100 0 000000 000 01456778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 477 ILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
+|.+.|++++|+..++++. . +.+...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888765 3 4457789999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHH
Q 006343 555 R-VRMKK 560 (649)
Q Consensus 555 ~-~~~~~ 560 (649)
+ +.+.|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7 54444
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=3.8e-05 Score=75.11 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=158.4
Q ss_pred CChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhc-C-CHHHHHH
Q 006343 345 ATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCG-NVVDAYRIFTNID---ERNIVSYNSMISGFAQN-G-LGEEALN 418 (649)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~ 418 (649)
+..++|..+...++..++. +..+|+.--..+...| .++++.+.++.+. +++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3345788888888888766 6667787777788888 5999999999887 46777898888777776 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCcHH--------HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC------
Q 006343 419 LFRKMKDEGLVPNQITFLSVLSACNHVGLVE--------EGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGS------ 483 (649)
Q Consensus 419 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~------ 483 (649)
+++++.+.. +-|...|..-.....+.|..+ +++++++.+.+. .| |...|+....++.+.|+
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 999999864 445667766555555556655 899999999873 45 57788888888888886
Q ss_pred -HHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccC------CCCC
Q 006343 484 -LAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNL--------------------DLAKLAAQHLMELE------PDSA 534 (649)
Q Consensus 484 -~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 534 (649)
+++++++++++. .+-|...|+-+...+...|+. ..-...+..+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 789999988765 455688999888888776654 22333333333332 4566
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 535 TPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.++..|+.+|...|+.++|.++.+.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7788999999999999999998877753
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=2.3e-06 Score=74.88 Aligned_cols=62 Identities=6% Similarity=0.023 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.. +.+.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 35777788888888899999999999999999888888999999999999999888 444443
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=9e-06 Score=71.02 Aligned_cols=128 Identities=9% Similarity=-0.056 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...|+...+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777777888888888888877753 335666777777778888888888888877763 22346777788888
Q ss_pred HHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHH--HHhcCChhHHHHHHHHHhc
Q 006343 478 LGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGA--GRTHLNLDLAKLAAQHLME 528 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~ 528 (649)
+.+.|++++|.+.++++. . +.+...+..+..+ +...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887754 2 3344455333333 5667888888888777655
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=2.5e-06 Score=72.02 Aligned_cols=99 Identities=10% Similarity=-0.132 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHH
Q 006343 431 NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALL 507 (649)
Q Consensus 431 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll 507 (649)
+...+..+...+...|++++|...|+..... .| +...+..++.++...|++++|...+++.. .+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556666666677777777777777776652 34 36677777777778888888887777654 233466888888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCC
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
.++...|+++.|+..+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888899999999999999988886
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=5.5e-06 Score=70.78 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLS 541 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (649)
+...+..++..+.+.|++++|.+.+++.. ..|+ ...|..+...+...|++++|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 47778889999999999999999999865 5676 578888999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHh
Q 006343 542 DLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~ 561 (649)
.+|...|++++|.+..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999554443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=2e-06 Score=71.78 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=49.7
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----CCC----hhHHHHHH
Q 006343 438 VLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-F----EPP----PGVWGALL 507 (649)
Q Consensus 438 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~----~~~----~~~~~~ll 507 (649)
+...+.+.|++++|+..|+...+ +.|+ ...|..+..+|.+.|++++|++.+++.. . .++ ..+|..++
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33344444444444444444443 2232 3444444444444444444444444332 1 111 12456667
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.++...|+++.|+..++++++..| ++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~-~~~~ 118 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFR-DPEL 118 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSC-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc-CHHH
Confidence 777788888888888888888777 4443
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=1.5e-05 Score=65.53 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
..|..+...+...|++++|+++|+++.... +.+..++..+...+...|++++|..+|+.+... .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 455556666666666666666666666542 234455555666666666666666666666552 12245556666666
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHH
Q 006343 478 LGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGR 511 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~ 511 (649)
+.+.|++++|.+.++++. ..| +...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 666666666666666543 222 3444444444433
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=1.5e-05 Score=66.12 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 006343 397 IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMV 475 (649)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 475 (649)
...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|..+++..... .| +...+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 3456666677777777777777777777652 334566666677777777777777777777662 34 366777777
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCh
Q 006343 476 DILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNL 516 (649)
Q Consensus 476 ~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~ 516 (649)
.++.+.|++++|.+.+++.. .. .+...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77778888888887777654 23 3455666666666666553
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=3.7e-06 Score=69.40 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHH
Q 006343 435 FLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGR 511 (649)
Q Consensus 435 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~ 511 (649)
+..+...+...|++++|+..|+...+ ..| +...|..+..++.+.|++++|+..+++.. ..| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455566777888888888888776 345 47778888888888888888888888765 344 4678888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCC
Q 006343 512 THLNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~ 534 (649)
..|++++|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998654
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=1.9e-06 Score=73.48 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCC-hhHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT-F-------EPP-PGVW----GALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~-~-------~~~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555555555555555554433 3 565 4567 777777788888888888888888888877665
Q ss_pred HHHH
Q 006343 537 YVVL 540 (649)
Q Consensus 537 ~~~l 540 (649)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4443
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=2.6e-06 Score=72.69 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 501 GVWGALLGAGRTHLNLDLAKLAAQHLMEL-------EPDSATPY----VVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 501 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
..|..+..++...|++++|+..+++++++ +|+++.+| ..++.++...|++++|.. +++.++
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38999999999999999999999999999 99999999 999999999999999999 555554
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=2e-06 Score=89.93 Aligned_cols=116 Identities=6% Similarity=-0.037 Sum_probs=99.8
Q ss_pred HHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCh
Q 006343 440 SACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNL 516 (649)
Q Consensus 440 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~ 516 (649)
..+...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|.+.+++.. ..| +...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 356778999999999999988 3564 8899999999999999999999999865 444 477899999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchHHHHHHH
Q 006343 517 DLAKLAAQHLMELEPDSATPYVVLSDL--YSVIGKKRDGNRVRM 558 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 558 (649)
++|+..++++++++|+++.++..++.+ +...|++++|.+..+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988 888999999999655
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.00013 Score=71.01 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=152.1
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC----------HHHHHHHHHhcC---CCChHHHHHHHHHHH
Q 006343 343 ATATL-NQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGN----------VVDAYRIFTNID---ERNIVSYNSMISGFA 408 (649)
Q Consensus 343 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 408 (649)
+.|.+ ++|......++..++. +..+|+.--..+...|. ++++..+++.+. +++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 4678888888887665 44555554444443333 677888888776 567889998888888
Q ss_pred hcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---
Q 006343 409 QNGL--GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL-VEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRA--- 481 (649)
Q Consensus 409 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~--- 481 (649)
..|+ +++++.+++++.+.. +-|...|..-...+.+.|. +++++++++.+... .| |...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence 8884 899999999999974 4567777776667777787 69999999999873 45 577777777776655
Q ss_pred -----------CCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCCchH
Q 006343 482 -----------GSLAEAIDLINSMT--FEPPPGVWGALLGAGRTH-----------LNLDLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 482 -----------g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 537 (649)
+.++++++++.+.. .+.|..+|+-+-..+... +-++.+++.++++++++|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 56889999998865 455688998666666544 357899999999999999885554
Q ss_pred HHHHHHHH---hcCCchHHHHHHHHHhh
Q 006343 538 VVLSDLYS---VIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 538 ~~l~~~~~---~~g~~~~a~~~~~~~~~ 562 (649)
..++.+.. ..|..+++......+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 44443322 24555566664444443
No 172
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=1.3e-05 Score=66.80 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACM 474 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 474 (649)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|..+|+...+. .| +...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHH
Confidence 44566777777777777788887777777642 334566666777777778888888877777762 34 46677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcC
Q 006343 475 VDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHL 514 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g 514 (649)
..++.+.|++++|.+.+++.. ..| +...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777888888888887777654 233 3445555555555444
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=1.1e-05 Score=77.81 Aligned_cols=181 Identities=8% Similarity=-0.020 Sum_probs=106.9
Q ss_pred HHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCCHHHHH
Q 006343 341 SAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID---ERNIVSYNSMISGFAQNGLGEEAL 417 (649)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 417 (649)
+...|++++|...+..+++..+. +...+..+...|.+.|++++|...+++.. +.+...|..+..+|...|++++|+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33333344444444333333222 45566777788888888888888888766 345678888888999999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 006343 418 NLFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT- 495 (649)
Q Consensus 418 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~- 495 (649)
..|++..+.. |+. ..+...+..... ..++.... .... ....++......+..++ .|+.++|.+.++...
T Consensus 93 ~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 93 ANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWN-SIEE-RRIHQESELHSYLTRLI--AAERERELEECQRNHE 163 (281)
T ss_dssp HHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHH-HHHH-TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT
T ss_pred HHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHH-HHHH-HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc
Confidence 9999887642 221 011111111111 11122221 1222 23455566655555543 689999998887765
Q ss_pred CCCChh-HHHHHHHHHHhc-CChhHHHHHHHHHhccCC
Q 006343 496 FEPPPG-VWGALLGAGRTH-LNLDLAKLAAQHLMELEP 531 (649)
Q Consensus 496 ~~~~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p 531 (649)
..|+.. ....+....... +..++|.++++++.+..+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 556544 334444444444 678889999998887443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=1.8e-06 Score=75.52 Aligned_cols=79 Identities=19% Similarity=0.052 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC-chHHHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSA-TPYVVLSDLY 544 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 544 (649)
...|..+..+|.+.|++++|...+++.. .. .+...|..++.++...|+++.|+..++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5677888888999999999999888765 33 4577889999999999999999999999999999887 4455555444
Q ss_pred Hh
Q 006343 545 SV 546 (649)
Q Consensus 545 ~~ 546 (649)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=7.5e-06 Score=65.89 Aligned_cols=99 Identities=16% Similarity=0.025 Sum_probs=68.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---ChhHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEP---PPGVWGALLGA 509 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~---~~~~~~~ll~~ 509 (649)
.+..+...+...|++++|..+|+...+. .+.+...+..+..++.+.|++++|.+.+++.. ..| +..+|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555566666666666666666652 12245666677777777777777777777654 333 46678888888
Q ss_pred HHhc-CChhHHHHHHHHHhccCCCCC
Q 006343 510 GRTH-LNLDLAKLAAQHLMELEPDSA 534 (649)
Q Consensus 510 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 534 (649)
+... |++++|++.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888654
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.20 E-value=1.3e-05 Score=79.52 Aligned_cols=128 Identities=8% Similarity=-0.038 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN----------------QITFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
+...|..+...|.+.|++++|+..|++.++.. |+ ...+..+..++...|++++|+..|+.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777778888888888888888887753 33 3677888888888899999999888888
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 006343 460 TLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLA-KLAAQHLME 528 (649)
Q Consensus 460 ~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 528 (649)
+ +.| +...|..+..+|...|++++|.+.++++. ..| +..++..+..++...|+.++| ...++++++
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 345 47788888889999999999999888765 334 466788888888888888888 446666664
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=1e-05 Score=67.25 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-h---hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 006343 474 MVDILGRAGSLAEAIDLINSMT-FEPP-P---GVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS---ATPYVVLSDLYS 545 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 545 (649)
++..+.+.|++++|.+.++++. ..|+ . ..|..++.++...|+++.|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444555555555555555433 1222 2 245555555556666666666666666666655 444566666666
Q ss_pred hcCCchHHHHH
Q 006343 546 VIGKKRDGNRV 556 (649)
Q Consensus 546 ~~g~~~~a~~~ 556 (649)
..|++++|...
T Consensus 88 ~~g~~~~A~~~ 98 (129)
T 2xev_A 88 GEGKNTEAQQT 98 (129)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCCHHHHHHH
Confidence 66666666663
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=6.6e-06 Score=68.38 Aligned_cols=108 Identities=5% Similarity=-0.065 Sum_probs=62.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C----CCC----hhHHHHH
Q 006343 436 LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-F----EPP----PGVWGAL 506 (649)
Q Consensus 436 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~----~~~----~~~~~~l 506 (649)
..+...+...|++++|..+|+..... .+.+...+..++.+|.+.|++++|...++++. . .++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33444444445555555555544442 11234445555555555555555555555432 1 122 4566777
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 507 LGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 507 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
...+...|+++.|...++++++..| ++.....+..++..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7778888888888888888888888 56666666655544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=2.1e-05 Score=65.35 Aligned_cols=103 Identities=15% Similarity=0.013 Sum_probs=67.5
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHH
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPG-P---EHYACMVDILGRAGSLAEAIDLINSMT-FEPP----PGVWGALLGA 509 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ll~~ 509 (649)
...+...|++++|...|+.+.+. .|+ . ..+..++.++.+.|++++|.+.+++.. ..|+ +..+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566666666666666552 232 2 356666777777777777777776653 2233 4556777778
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006343 510 GRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLY 544 (649)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (649)
+...|+.+.|+..++++++..|+++........+-
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 88888899999999999888887766555444443
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=1.3e-05 Score=66.64 Aligned_cols=95 Identities=8% Similarity=-0.020 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------CchHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS-------ATPYV 538 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 538 (649)
...+..++..+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4567788899999999999999999865 34567788899999999999999999999999998876 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 006343 539 VLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
.++.+|...|++++|.+..+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999995554443
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=2e-05 Score=71.44 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C----------------hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 469 EHYACMVDILGRAGSLAEAIDLINSMT-FEP-P----------------PGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 469 ~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
..+..++..+.+.|++++|.+.+++.. ..| + ..+|..+..++...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 344555666666666666666666543 111 1 2678888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 531 PDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
|+++.++..++.+|...|++++|.+..+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999999999999954443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=2.2e-06 Score=70.30 Aligned_cols=94 Identities=10% Similarity=-0.008 Sum_probs=56.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHH
Q 006343 445 VGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKL 521 (649)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~ 521 (649)
.|++++|+.+|+...+...-.|+ ...+..++.+|.+.|++++|.+.+++.. . +.+..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666541000232 5556666677777777777777776654 2 3345566777777777777777777
Q ss_pred HHHHHhccCCCCCchHH
Q 006343 522 AAQHLMELEPDSATPYV 538 (649)
Q Consensus 522 ~~~~~~~~~p~~~~~~~ 538 (649)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777776655433
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=8.6e-05 Score=78.96 Aligned_cols=168 Identities=8% Similarity=-0.072 Sum_probs=133.9
Q ss_pred CHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-
Q 006343 381 NVVDAYRIFTNID---ERNIVSYNSMISGFAQNGL----------GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG- 446 (649)
Q Consensus 381 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 446 (649)
.-++|.+.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3455677777666666666 899999999998864 445667777777788888
Q ss_pred -cHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhc--------
Q 006343 447 -LVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAG-SLAEAIDLINSMT-F-EPPPGVWGALLGAGRTH-------- 513 (649)
Q Consensus 447 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g-~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~-------- 513 (649)
++++++..++.+.+ +.| +...|+.-..++.+.| ..+++.++++++. . +-+...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 67999999999988 355 5777888888888889 8999999999876 3 44578998888877653
Q ss_pred ------CChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 006343 514 ------LNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRD 552 (649)
Q Consensus 514 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (649)
+.++++.+.++++++++|++..+|..+..++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999998655
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=6.3e-06 Score=66.46 Aligned_cols=89 Identities=12% Similarity=-0.054 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------CchHH
Q 006343 467 GPEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS------ATPYV 538 (649)
Q Consensus 467 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 538 (649)
+...+..++..+.+.|++++|.+.+++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888889999999999888765 34457788999999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCchHHHH
Q 006343 539 VLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 539 ~l~~~~~~~g~~~~a~~ 555 (649)
.++.++...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 89999999888877765
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=5.9e-06 Score=83.12 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVD 476 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 476 (649)
..|..+...+.+.|++++|+..|++.++. .|+.. ..-.. +... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 45777777888888888888888877652 01100 00000 1111 1223 3677888999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 477 ILGRAGSLAEAIDLINSMT-FEP-PPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
+|.+.|++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 445 47788999999999999999999999999999999999999999999998888877
Q ss_pred H
Q 006343 555 R 555 (649)
Q Consensus 555 ~ 555 (649)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 6
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=1.5e-06 Score=71.32 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 006343 480 RAGSLAEAIDLINSMT-F---EPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGN 554 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~-~---~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (649)
..|++++|+..+++.. . .|+ ..+|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999998865 3 243 5688899999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHh
Q 006343 555 R-VRMKKK 561 (649)
Q Consensus 555 ~-~~~~~~ 561 (649)
. +.+.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 9 555554
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.9e-05 Score=80.04 Aligned_cols=162 Identities=7% Similarity=-0.086 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHhhccCcHHHHHHHHHHhHHh---cCCCCC-hh
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEG-LVPNQI----TFLSVLSACNHVGLVEEGFIYFKSMKTL---YNIEPG-PE 469 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~ 469 (649)
++..++..|...|++++|.+.+.++...- -.++.. ....+-..+...|..+++..+++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777888888888888877766521 112221 1222233345667888888887776542 122222 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-----C--CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------C
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT-----F--EPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDS-------A 534 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~-----~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~ 534 (649)
.+..++.+|...|++++|..++++.. . .+. ..++..++..|...|++++|...+++++...|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 67778888888888888888887653 1 122 3467777888888899999999888888754322 2
Q ss_pred chHHHHHHHHHhcCCchHHHH-HHHHH
Q 006343 535 TPYVVLSDLYSVIGKKRDGNR-VRMKK 560 (649)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~-~~~~~ 560 (649)
..+..++.++...|+|++|.+ +.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667777888888888888 44443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=8e-06 Score=81.14 Aligned_cols=144 Identities=13% Similarity=-0.017 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006343 397 IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVD 476 (649)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (649)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777778888889999999999988774 455432 233444454443321 136778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh-cCCchHH
Q 006343 477 ILGRAGSLAEAIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV-IGKKRDG 553 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a 553 (649)
+|.+.|++++|...+++.. .. .+...|..+..++...|++++|+..++++++++|+++.++..|..+... .+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888765 33 4577888899999999999999999999999999999888888888443 4555555
Q ss_pred HHHHHHH
Q 006343 554 NRVRMKK 560 (649)
Q Consensus 554 ~~~~~~~ 560 (649)
.++.+.|
T Consensus 319 ~~~~~~~ 325 (338)
T 2if4_A 319 KEMYKGI 325 (338)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 5554444
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=1.1e-05 Score=69.92 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PNQ----ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYAC 473 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 473 (649)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|..+++.......-.++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 85 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----- 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----
Confidence 4556666666667777777766665542100 110 233344444444555555555544443311000000
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CCchHHHHHHHHHhc
Q 006343 474 MVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD------SATPYVVLSDLYSVI 547 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~ 547 (649)
.....++..+...+...|++++|...+++++++.+. .+..+..++.+|...
T Consensus 86 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 86 -----------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 000234555566666667777777777766654221 134567777788888
Q ss_pred CCchHHHHHH
Q 006343 548 GKKRDGNRVR 557 (649)
Q Consensus 548 g~~~~a~~~~ 557 (649)
|++++|.+..
T Consensus 143 g~~~~A~~~~ 152 (164)
T 3ro3_A 143 GNHDQAMHFA 152 (164)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8888887733
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.6e-05 Score=79.02 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=83.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHV 445 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 445 (649)
...+..+...+.+.|++++|...|++....+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788888999999999999998653222111 1223344444443321 23677788889999
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHH-HhcCChhHHHH
Q 006343 446 GLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAG-RTHLNLDLAKL 521 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~-~~~g~~~~a~~ 521 (649)
|++++|+..|+...+ +.| +...|..+..+|...|++++|...+++.. ..|+ ..++..|.... ...+..+.+..
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 345 58889999999999999999999999876 5555 44566555553 35677888999
Q ss_pred HHHHHhccCCCCCc
Q 006343 522 AAQHLMELEPDSAT 535 (649)
Q Consensus 522 ~~~~~~~~~p~~~~ 535 (649)
.++++++..|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999997653
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=2.8e-05 Score=59.91 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYS 545 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (649)
...+..+...+.+.|++++|.+.+++.. .+.+..+|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5567778888888888888888888764 33456788889999999999999999999999999999999999999887
Q ss_pred hcC
Q 006343 546 VIG 548 (649)
Q Consensus 546 ~~g 548 (649)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 755
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=2.2e-05 Score=67.91 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----
Q 006343 366 VSIQNSLVSLYSKCGNVVDAYRIFTNIDE-----RNI----VSYNSMISGFAQNGLGEEALNLFRKMKDEGLV-PN---- 431 (649)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 431 (649)
..++..+...|...|++++|...+++... .+. .++..+...+...|++++|+..+++..+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988762 221 47888899999999999999999998763111 11
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 432 QITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
...+..+...+...|++++|..+++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23455556666777777777777766554
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00032 Score=72.13 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCC
Q 006343 303 ISGFVNNEQYEEAFRWFIEMLRKD 326 (649)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g 326 (649)
...+.+.|++++|++.|.++++..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 456778899999999999988753
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=3.9e-05 Score=60.64 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHh
Q 006343 498 PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRV-RMKKK 561 (649)
Q Consensus 498 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~ 561 (649)
.++..|..++..+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+. .+.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999999999999994 44443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=6.2e-05 Score=75.61 Aligned_cols=62 Identities=5% Similarity=-0.017 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHh
Q 006343 500 PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKK 561 (649)
Q Consensus 500 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 561 (649)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+ +.+.++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999999999999999999999 454444
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=4.5e-05 Score=79.14 Aligned_cols=123 Identities=8% Similarity=-0.038 Sum_probs=92.5
Q ss_pred hhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC------C---CCC-hhHHHH
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYN--IEPG----PEHYACMVDILGRAGSLAEAIDLINSMT------F---EPP-PGVWGA 505 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~------~---~~~-~~~~~~ 505 (649)
+...|++++|..+++....... +.|+ ..+++.|+.+|...|++++|+.++++.. . .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567788888777776654321 2222 5667888888888999999888887653 2 333 347888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLME-----LEPDSATP---YVVLSDLYSVIGKKRDGNRVRMKKKLKR 564 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (649)
|+..|...|++++|+..++++++ +.|+++.+ ...|..++...|++++|..+++.+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 67777655 4577888889999999999877777644
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=6.9e-05 Score=77.79 Aligned_cols=95 Identities=6% Similarity=-0.081 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----------------hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT-FEPP----------------PGVWGALLGAGRTHLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 530 (649)
...+..+...|.+.|++++|...|++.. ..|+ ..+|..+..++...|+++.|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344555556666666666666665543 1122 4688899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 006343 531 PDSATPYVVLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
|+++.+|..++.+|...|++++|....+...+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999995554443
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=2.1e-05 Score=66.89 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCH----------HHHHHHHHhCC-CCCC-hhHHHHHHHHHHh
Q 006343 446 GLVEEGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSL----------AEAIDLINSMT-FEPP-PGVWGALLGAGRT 512 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~----------~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~ 512 (649)
+.+++|++.++...+ +.| +.+.|..+..++...|++ ++|+..+++.. +.|+ ..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345555555555554 234 355555555555555443 46666666554 3443 5566667777665
Q ss_pred c-----------CChhHHHHHHHHHhccCCCCCch
Q 006343 513 H-----------LNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 513 ~-----------g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
. |++++|+..++++++++|++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5 58999999999999999976543
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=1.6e-05 Score=67.60 Aligned_cols=83 Identities=6% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCh----------hHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 479 GRAGSLAEAIDLINSMT--FEPPPGVWGALLGAGRTHLNL----------DLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 479 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
.|.+.+++|.+.++... .+.++..|..+..++...+++ ++|+..++++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 46678899999888765 344678888888888877664 599999999999999999999999999998
Q ss_pred cC-----------CchHHHH-HHHHHh
Q 006343 547 IG-----------KKRDGNR-VRMKKK 561 (649)
Q Consensus 547 ~g-----------~~~~a~~-~~~~~~ 561 (649)
.| ++++|.+ +++.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 85 8999999 555554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=8e-05 Score=60.45 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=52.8
Q ss_pred HHHHHHhCC-CC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 006343 487 AIDLINSMT-FE-PPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMK 559 (649)
Q Consensus 487 A~~~~~~~~-~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (649)
|.+.+++.. .. .+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|....+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444432 23 34667777777788888888888888888888888888888888888888888888884443
No 201
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.57 E-value=6.9e-05 Score=74.36 Aligned_cols=401 Identities=12% Similarity=0.137 Sum_probs=239.0
Q ss_pred cchHHHHHHHHHhCCCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhhHHHHHhhcccCCCChhhHHHHHHHHHccC
Q 006343 6 SASYNAMITALINNNCSIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFYEAEELYVNMPARWRDSVCSNALISGYLKVG 85 (649)
Q Consensus 6 ~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 85 (649)
+.+|..|-.++.+. |+..+|...| +...|+..|..+|.+..+.|.+++-+..+...++...++..=+.|+-+|++.+
T Consensus 54 p~VWs~LgkAqL~~-~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 54 PAVWSQLAKAQLQK-GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCSSSHHHHTTTS-SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHcc-CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 45677788888887 8888887766 45567777889999999999999999888877776556666678899999988
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCC------------------------CCcccHHHHHH
Q 006343 86 RCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPE------------------------KNVVAWTAMVD 141 (649)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------------------~~~~~~~~li~ 141 (649)
++.+-.+.+ ..++..-.....+-|...|.++.|.-+|..+.. .++.+|-.+-.
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ 207 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 207 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTH
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 876533322 235555566677777788888888888777642 46668888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHH
Q 006343 142 GYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGF-DYDIILGNSIITMYGRLGFMD 220 (649)
Q Consensus 142 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~y~~~g~~~ 220 (649)
+|+..+.+.-|.-.--.++-. || ....++.-|-..|.+++-..+++..+ |+ .....+++.|.-.|+|-. .+
T Consensus 208 ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-Pe 279 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQ 279 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TT
T ss_pred HHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HH
Confidence 888888877665554444322 11 12234455666777777777766655 32 346778888888888763 34
Q ss_pred HHHHHHhhCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHhh-------------CC--CCChhHHHHHHHH
Q 006343 221 EANKVFSMMSK-----------RDAVSWNSLISGYVHNGEIEEAYRLFER-------------MP--GKDFVSWTTMITG 274 (649)
Q Consensus 221 ~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------m~--~~~~~~~~~li~~ 274 (649)
+..+-++.... .....|.-++-.|.+-.+++.|....-+ +. -.|...|..-|.-
T Consensus 280 KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~F 359 (624)
T 3lvg_A 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 359 (624)
T ss_dssp HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHH
Confidence 44444333221 2456788888888888888876532111 10 1244444444443
Q ss_pred HHcC---------------CChHHHHHHHhhCC-------------CCCh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 006343 275 FSSK---------------GNLEKSIELFNMMP-------------EKDD-VTWTAIISGFVNNEQYEEAFRWFIEMLRK 325 (649)
Q Consensus 275 ~~~~---------------g~~~~A~~~~~~~~-------------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (649)
|... =+...+.++|++.- ..|. ..-.++-..|....+++
T Consensus 360 YL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~------------ 427 (624)
T 3lvg_A 360 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ------------ 427 (624)
T ss_dssp HTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH------------
T ss_pred HHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH------------
Confidence 3322 22233333333221 1111 11122222233332221
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHH
Q 006343 326 DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMIS 405 (649)
Q Consensus 326 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 405 (649)
++..-+..|.+-..+..|.++ .+.. -...-..-...|.+.++++++..+.++=. .|.-.|.
T Consensus 428 -------~LR~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAie 488 (624)
T 3lvg_A 428 -------ALRTSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQ 488 (624)
T ss_dssp -------HHHHTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGT
T ss_pred -------HHHHHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHH
Confidence 222222222222222222222 2211 11122233456778888888877654322 2333345
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIY 454 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 454 (649)
.-+..|+.+-|.++++-..+.| +...|...|-.|.+.=++|-.+++
T Consensus 489 tAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 489 YASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 5567888899999999888866 567788999999888777777765
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=0.00029 Score=54.45 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=58.4
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 006343 497 EPPPGVWGALLGAGRTHLN---LDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKR 564 (649)
Q Consensus 497 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (649)
++++..|..+..++...++ .++|...++++++++|+++.+...+++++...|++++|+..++.+-+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788888888765554 7999999999999999999999999999999999999999777776543
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.52 E-value=8.6e-05 Score=77.01 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=85.4
Q ss_pred HHHhcCCHHHHHHHHHhCC------CCC---C-hhHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCC---chHH
Q 006343 477 ILGRAGSLAEAIDLINSMT------FEP---P-PGVWGALLGAGRTHLNLDLAKLAAQHLME-----LEPDSA---TPYV 538 (649)
Q Consensus 477 ~l~~~g~~~~A~~~~~~~~------~~~---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 538 (649)
.+..+|++++|+.++++.. ..| + ..+++.|+.+|...|++++|+..++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4668899999999987653 223 3 34789999999999999999999999997 456554 5588
Q ss_pred HHHHHHHhcCCchHHHHH-HHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhh
Q 006343 539 VLSDLYSVIGKKRDGNRV-RMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTK 608 (649)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 608 (649)
.|+.+|..+|++++|..+ .+++.-. .+.-| ..||...++...|.....++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~--~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAIL--LVTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH--HHHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999994 4444321 11111 359999999988877665444
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=9.2e-05 Score=59.38 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-------hh
Q 006343 397 IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-------PE 469 (649)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~ 469 (649)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+...+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3456666667777777777777777776652 33455666666667777777777777776665 4444 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
.+..+..++...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4444555555555555554444443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.00041 Score=58.43 Aligned_cols=111 Identities=12% Similarity=-0.079 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 006343 411 GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGR----AGSLAE 486 (649)
Q Consensus 411 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~ 486 (649)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|+...+. .++..+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777766 33333 445566666677777777776652 455666666666666 666777
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccC
Q 006343 487 AIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAKLAAQHLMELE 530 (649)
Q Consensus 487 A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 530 (649)
|.+++++.....++..+..|...|.. .+|.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77766665433455556666666665 566666666666666653
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00014 Score=74.25 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC------CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCC---ch
Q 006343 475 VDILGRAGSLAEAIDLINSMT------FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLME-----LEPDSA---TP 536 (649)
Q Consensus 475 ~~~l~~~g~~~~A~~~~~~~~------~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 536 (649)
++-+.+.|++++|++++++.. ..|+ ..+++.|+.+|...|++++|+..++++++ +.|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888887776542 2233 34678888889999999999999999887 345444 45
Q ss_pred HHHHHHHHHhcCCchHHHH-HHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHHHHHHhhhh
Q 006343 537 YVVLSDLYSVIGKKRDGNR-VRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQTISKGTKE 609 (649)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 609 (649)
+..|+.+|..+|++++|.. +.++++-. .+.-| ..||...+++..|++...+|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~--~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIM--RVTHG-----------------REHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTC-----------------TTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhcC-----------------CCChHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999 44444321 11111 3599999999999988888763
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00026 Score=57.37 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=60.4
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 450 EGFIYFKSMKTLYNIEP-GPEHYACMVDILGRAGSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 450 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
+++..|+...+ ..| +...+..++..|.+.|++++|...+++.. . +.+...|..+..++...|+++.|+..++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666654 344 46777788888888888888888887754 3 344668888888888899999999999999
Q ss_pred hccCCCC
Q 006343 527 MELEPDS 533 (649)
Q Consensus 527 ~~~~p~~ 533 (649)
+++.|++
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8888743
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.0018 Score=68.83 Aligned_cols=147 Identities=13% Similarity=0.066 Sum_probs=117.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCc----------HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 006343 410 NGLGEEALNLFRKMKDEGLVPNQI-TFLSVLSACNHVGL----------VEEGFIYFKSMKTLYNIEP-GPEHYACMVDI 477 (649)
Q Consensus 410 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 477 (649)
....++|++.+++++.. .|+.. .|+.--.++.+.|. +++++..++.+.+ ..| +...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 34457889999999985 56654 44444445555566 8999999999987 355 57888888889
Q ss_pred HHhcC--CHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCCchHHHHHHHHHhc-----
Q 006343 478 LGRAG--SLAEAIDLINSMT--FEPPPGVWGALLGAGRTHL-NLDLAKLAAQHLMELEPDSATPYVVLSDLYSVI----- 547 (649)
Q Consensus 478 l~~~g--~~~~A~~~~~~~~--~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 547 (649)
+.+.| ++++|+++++++. .+.+..+|+.-..+....| ..+++.+.++++++.+|++..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 7799999999986 4556889999988888888 899999999999999999999999999998885
Q ss_pred ---------CCchHHHH-HHHHHh
Q 006343 548 ---------GKKRDGNR-VRMKKK 561 (649)
Q Consensus 548 ---------g~~~~a~~-~~~~~~ 561 (649)
++++++.+ +.+++.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 45677777 444543
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.37 E-value=0.0012 Score=55.42 Aligned_cols=113 Identities=9% Similarity=-0.056 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHH
Q 006343 445 VGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRT----HLNLDLAK 520 (649)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~ 520 (649)
.+++++|.++|+...+. + .|. .. |..+|...+..++|.+++++.....++..+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35788999999998873 3 333 33 888888889999999999987655778888889999887 89999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 006343 521 LAAQHLMELEPDSATPYVVLSDLYSV----IGKKRDGNRVRMKKKLKRI 565 (649)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (649)
..++++.+. .++.++..|+.+|.. .++.++|.+..+...+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987 578999999999999 8999999996666655553
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.0013 Score=64.25 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHhh
Q 006343 497 EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR-VRMKKKL 562 (649)
Q Consensus 497 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 562 (649)
+.++.++..+...+...|+++.|+..++++++++| +...|..++.++.-.|++++|.+ +.++++.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34566666666666666778888888888877777 45667777777777788877777 5555554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.00019 Score=73.10 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHhCC------CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCC---CchHHHHHH
Q 006343 481 AGSLAEAIDLINSMT------FEPP----PGVWGALLGAGRTHLNLDLAKLAAQHLME-----LEPDS---ATPYVVLSD 542 (649)
Q Consensus 481 ~g~~~~A~~~~~~~~------~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~ 542 (649)
.|++++|+.++++.. ..|+ ..++++|+.+|...|++++|+..++++++ +.|++ ...|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356666666665432 2222 34677888888888888888888888886 44544 445788999
Q ss_pred HHHhcCCchHHHH-HHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCCHHHHHHHHH
Q 006343 543 LYSVIGKKRDGNR-VRMKKKLKRIRKSPGCSWIILKDKVHLFLAGRKSCLDLKEIEVTLQ 601 (649)
Q Consensus 543 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 601 (649)
+|..+|++++|.. +.++++-. .+.-| ..||...+++..|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~--~~~lG-----------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM--EVAHG-----------------KDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHHTC-----------------TTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH--HHHcC-----------------CCChHHHHHHHHHh
Confidence 9999999999999 44444321 11111 35888888877765
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0015 Score=50.91 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-Chh-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchH
Q 006343 474 MVDILGRAGSLAEAIDLINSMT-FEP-PPG-VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPY 537 (649)
Q Consensus 474 l~~~l~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (649)
.+..+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556777888888888887754 333 456 788888888888999999999999999999887776
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.017 Score=56.48 Aligned_cols=146 Identities=12% Similarity=-0.057 Sum_probs=94.4
Q ss_pred CCChHHHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhc---cC-----cHHHHHHHHHHhH
Q 006343 394 ERNIVSYNSMISGFA--QNGL---GEEALNLFRKMKDEGLVPNQ-ITFLSVLSACNH---VG-----LVEEGFIYFKSMK 459 (649)
Q Consensus 394 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~~~ 459 (649)
+.+...|...+.+.. ..+. ..+|+.+|++.++. .|+. ..+..+..++.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 446666766665543 2333 47888888888875 5663 333333333321 01 1111112222221
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
.....+.++..|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.. .+|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHH
Confidence 111224468888888888888899999999999876 56887788777888889999999999999999999955 4555
Q ss_pred HHHH
Q 006343 539 VLSD 542 (649)
Q Consensus 539 ~l~~ 542 (649)
..-+
T Consensus 348 ~~~~ 351 (372)
T 3ly7_A 348 WIEN 351 (372)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 4433
No 214
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.10 E-value=0.0039 Score=47.30 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 006343 398 VSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP-GPEHYACMVD 476 (649)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 476 (649)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+.... +.| +...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 345555566666666666666666666542 22344555555566666666666666666555 233 2444555554
Q ss_pred HHHh
Q 006343 477 ILGR 480 (649)
Q Consensus 477 ~l~~ 480 (649)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.07 E-value=0.0024 Score=50.07 Aligned_cols=64 Identities=8% Similarity=0.093 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 396 NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+...|..+...|...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666666666666666666666542 22344555555566666666666666665554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.99 E-value=0.0021 Score=50.03 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=49.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCCchHHHHHH-HHHh
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDSAT-PYVVLSDLYSVIGKKRDGNRVR-MKKK 561 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~-~~~~ 561 (649)
.+..+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.. +.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677899999999999999999999999 9999999999999999999954 4444
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0025 Score=64.91 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=65.9
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHHHHHHH
Q 006343 445 VGLVEEGFIYFKSMKTLY--NIEPG----PEHYACMVDILGRAGSLAEAIDLINSMT---------FEPP-PGVWGALLG 508 (649)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ll~ 508 (649)
.|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 466777777766654421 12232 4567778888888888888888877653 2344 347888999
Q ss_pred HHHhcCChhHHHHHHHHHhc-----cCCCCCchHH
Q 006343 509 AGRTHLNLDLAKLAAQHLME-----LEPDSATPYV 538 (649)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 538 (649)
.|...|++++|+..++++++ +.|+++.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999987 5676655443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.059 Score=60.15 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=93.7
Q ss_pred HHHhcCCHHHHHH-HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhh
Q 006343 212 MYGRLGFMDEANK-VFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNM 290 (649)
Q Consensus 212 ~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (649)
.....+++++|.+ ++..++. ......++..+.+.|..++|+++.+. . ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHh
Confidence 3445678888877 5544441 12236677777788888888876531 1 1123455678888988888776
Q ss_pred CCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHH
Q 006343 291 MPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQN 370 (649)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (649)
+. +...|..+...+.+.|+++.|.+.|.++.. +..+...+...++.+....+-..+...|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 63 457889999999999999999999887743 23344444445555554444444433331 23
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 006343 371 SLVSLYSKCGNVVDAYRIF 389 (649)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~ 389 (649)
.-..+|.++|++++|.+++
T Consensus 741 ~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344455566666666554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.0044 Score=63.13 Aligned_cols=100 Identities=9% Similarity=-0.084 Sum_probs=68.2
Q ss_pred HhhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-hhHHH
Q 006343 441 ACNHVGLVEEGFIYFKSMKTLYN--IEPG----PEHYACMVDILGRAGSLAEAIDLINSMT---------FEPP-PGVWG 504 (649)
Q Consensus 441 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~---------~~~~-~~~~~ 504 (649)
.+...|++++|..+++....... +.|+ ..+++.++.+|...|++++|+.++++.. ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777766654211 2222 4556777777888888888887777543 2333 34678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----cCCCCCchHHHH
Q 006343 505 ALLGAGRTHLNLDLAKLAAQHLME-----LEPDSATPYVVL 540 (649)
Q Consensus 505 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 540 (649)
.|...|...|++++|+..++++++ +.|++|.+-..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 888899999999999999999887 678776655443
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.61 E-value=0.00045 Score=68.66 Aligned_cols=205 Identities=15% Similarity=0.156 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 101 DVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 101 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
.+.+|+.|..++.+.+++.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+...++..-.|. .=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 4567777788877777777777666433 4555677778888888888887777766665433333 33456677777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CChhh
Q 006343 181 FFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK------------------------RDAVS 236 (649)
Q Consensus 181 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~------------------------~~~~~ 236 (649)
.+++.+-++++ -.|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77665443332 135555555666777777777777777766541 36778
Q ss_pred HHHHHHHHHhcCCHHHHHH------------------------------HHhhCC---CCChhHHHHHHHHHHcCCChHH
Q 006343 237 WNSLISGYVHNGEIEEAYR------------------------------LFERMP---GKDFVSWTTMITGFSSKGNLEK 283 (649)
Q Consensus 237 ~~~li~~~~~~g~~~~A~~------------------------------~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 283 (649)
|-.+-.+|...+.+.-|.. +++.-. +.....|+-|.-.|+|- ++++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 8888888887776654422 222111 23456788888888875 4455
Q ss_pred HHHHHhhCCC----C-------ChhhHHHHHHHHhcCCCHHHHHH
Q 006343 284 SIELFNMMPE----K-------DDVTWTAIISGFVNNEQYEEAFR 317 (649)
Q Consensus 284 A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 317 (649)
-.+-++.... | ....|..++-.|.+-.+++.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444443332 1 45678888888888888887743
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.51 E-value=0.075 Score=59.31 Aligned_cols=145 Identities=18% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHHHccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHH
Q 006343 75 NALISGYLKVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFD 154 (649)
Q Consensus 75 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 154 (649)
..++..+.+.|..+.|.++.+. + ..-.....++|+++.|.++...+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4444445555555555443321 1 111223345566666666555443 33456666666666666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 006343 155 LFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDA 234 (649)
Q Consensus 155 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 234 (649)
.|.++.. |..+...+...++.+...++-......|. ++.-..+|.++|++++|.+++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------- 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------- 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH-------
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH-------
Confidence 6665532 22233333334444444444433333331 2333344556666666665543
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006343 235 VSWNSLISGYVHNGEIEEAYRLFERMPG 262 (649)
Q Consensus 235 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 262 (649)
+.+++++|..+-++...
T Consensus 761 -----------~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 761 -----------KSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp -----------HTTCHHHHHHHHHHTTC
T ss_pred -----------HcCChHHHHHHHHHhCC
Confidence 34556666665555443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.38 E-value=0.023 Score=43.54 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 465 EPGPEHYACMVDILGRAGS---LAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 465 ~p~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
++++..+..+..++...+. .++|..++++.. ..|+ +..+..++..+...|++++|+..++++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4567788888888765554 688888888765 4454 667777888888999999999999999999997 433433
Q ss_pred H
Q 006343 540 L 540 (649)
Q Consensus 540 l 540 (649)
+
T Consensus 82 i 82 (93)
T 3bee_A 82 I 82 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.012 Score=46.30 Aligned_cols=74 Identities=18% Similarity=0.066 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHH
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMT---------FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYV 538 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (649)
..-+..|+..+.+.|++..|...++.+. ..+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344456666666666666666665432 1233567888999999999999999999999999999877766
Q ss_pred HHH
Q 006343 539 VLS 541 (649)
Q Consensus 539 ~l~ 541 (649)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.18 E-value=0.017 Score=48.41 Aligned_cols=89 Identities=13% Similarity=-0.037 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--ChhHHHHHHHHHHhcCChhH
Q 006343 446 GLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAG---SLAEAIDLINSMT-FE-P--PPGVWGALLGAGRTHLNLDL 518 (649)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~ll~~~~~~g~~~~ 518 (649)
+....+.+.|.+.... -.++.++...+..+|.+.+ +.+++..++++.. .. | ....+..|.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455666666655542 2366777777777777777 5557777777654 22 3 24456667777778888888
Q ss_pred HHHHHHHHhccCCCCCch
Q 006343 519 AKLAAQHLMELEPDSATP 536 (649)
Q Consensus 519 a~~~~~~~~~~~p~~~~~ 536 (649)
|++.++++++++|++..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 888888888888855443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.89 E-value=0.021 Score=47.85 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 006343 413 GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVG---LVEEGFIYFKSMKTLYNIEP--GPEHYACMVDILGRAGSLAEA 487 (649)
Q Consensus 413 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A 487 (649)
...+.+-|.+....| .++..+-..+..++.+++ ++++|+.+|+...+. -.| +.+.+-.|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCccchHHHHHHHHHHHHHccCHHHH
Confidence 455666677776666 367777777778888877 677999999988874 135 366667778888999999999
Q ss_pred HHHHHhCC-CCCChh
Q 006343 488 IDLINSMT-FEPPPG 501 (649)
Q Consensus 488 ~~~~~~~~-~~~~~~ 501 (649)
.++++.+. .+|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 99998876 566543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.81 E-value=0.023 Score=53.17 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHhCC-CCCC---hhHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CCchHH
Q 006343 485 AEAIDLINSMT-FEPP---PGVWGALLGAGRT-----HLNLDLAKLAAQHLMELEPDS-ATPYVVLSDLYSVI-GKKRDG 553 (649)
Q Consensus 485 ~~A~~~~~~~~-~~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 553 (649)
.+|...+++.. ..|+ ...|..|+..|.. -|+.++|++.++++++++|+. ..+++.++..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34444444433 4454 4466666666665 377777777777777777754 77777777777774 777777
Q ss_pred HHHHHHHhhCCCccCCc
Q 006343 554 NRVRMKKKLKRIRKSPG 570 (649)
Q Consensus 554 ~~~~~~~~~~~~~~~~g 570 (649)
.+..+..-....+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77444443333333243
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.22 E-value=1.2 Score=38.27 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHH
Q 006343 373 VSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGF 452 (649)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 452 (649)
.+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|++... |..+.--|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456778888888877665 3566788888888888888888888777543 223333344456655544
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 453 IYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
++-+..... - -++.-...+.-.|+++++.+++.+...-|. -.-..+.+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~----g---~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR----E---DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT----T---CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC----c---cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 433332221 1 122233344456777777776665442111 111223455556665555443
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.98 Score=38.78 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 006343 274 GFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQI 353 (649)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 353 (649)
....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566677666666554 3455677777777777777777777766532 22333334445555444444
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006343 354 HAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNID 393 (649)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (649)
-+.....|- ++.-...+.-.|+++++.++|.+..
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333333321 2333344445566666666665433
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.38 E-value=0.097 Score=48.97 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHh-cCCh
Q 006343 449 EEGFIYFKSMKTLYNIEPG---PEHYACMVDILGR-----AGSLAEAIDLINSMT-FEPP--PGVWGALLGAGRT-HLNL 516 (649)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~l~~-----~g~~~~A~~~~~~~~-~~~~--~~~~~~ll~~~~~-~g~~ 516 (649)
.+|...+++..+ +.|+ ...|..++.+|.+ -|+.++|.+.|++.. +.|+ ..++......+.. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 334444444443 4554 3345555555555 266666666666544 3442 4444445554444 3666
Q ss_pred hHHHHHHHHHhccCCC
Q 006343 517 DLAKLAAQHLMELEPD 532 (649)
Q Consensus 517 ~~a~~~~~~~~~~~p~ 532 (649)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666666663
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.19 E-value=1.8 Score=34.93 Aligned_cols=139 Identities=9% Similarity=0.097 Sum_probs=79.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 006343 409 QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAI 488 (649)
Q Consensus 409 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~ 488 (649)
-.|..++..++..+..... +..-++-++--...+-+-+-..+.++.+-+.+.+. .+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHH
Confidence 3566666666666655431 22333333322223333333344444443332222 344444444
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 006343 489 DLINSMTFEPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLKRIR 566 (649)
Q Consensus 489 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (649)
..+-.+- .+.......+.....+|.-++-.++...++.-+|-+|..++.++++|.+.|+..+|.++++..=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4444432 344455556667777888888888888865544447888888888888888888888877777777764
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.12 Score=55.94 Aligned_cols=53 Identities=13% Similarity=-0.085 Sum_probs=48.2
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 508 GAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
.-|...|+++.|+.++++++..-|++..+|..|+.+|...|+|+.|.-....+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34678999999999999999999999999999999999999999999865554
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.12 E-value=7 Score=41.37 Aligned_cols=122 Identities=11% Similarity=-0.020 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 006343 411 GLGEEALNLFRKMKDEGLVPNQITFL----SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAE 486 (649)
Q Consensus 411 g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~ 486 (649)
.+.+.|..+|....... ..+..... .+.......+...++...+..... ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37899999998887643 22332222 222233445535566666666443 23444334445555568899999
Q ss_pred HHHHHHhCCCCC-ChhHH-HHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHH
Q 006343 487 AIDLINSMTFEP-PPGVW-GALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVL 540 (649)
Q Consensus 487 A~~~~~~~~~~~-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (649)
|...|+.|+..+ +..-| -=+..+....|+.++|...++++.+ + .+.|-.|
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 999999998432 22222 2345566788999999999999985 3 2445544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.67 E-value=0.31 Score=39.15 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=66.9
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--ChhHHHHHHHHHH
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAE---AIDLINSMTFE--P--PPGVWGALLGAGR 511 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~ll~~~~ 511 (649)
+..-.....+..+.+-+...... + .|+..+-..+..+|.+.....+ +..++++.... | .-...-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33333444555666666655542 2 3778888888888888887776 77888776522 3 1224455677788
Q ss_pred hcCChhHHHHHHHHHhccCCCCCchHHH
Q 006343 512 THLNLDLAKLAAQHLMELEPDSATPYVV 539 (649)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (649)
+.|+++.|++.++.+++.+|++..+..+
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999966554433
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.55 E-value=0.56 Score=37.68 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCC
Q 006343 409 QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEE---GFIYFKSMKTLYNIEP--GPEHYACMVDILGRAGS 483 (649)
Q Consensus 409 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~ 483 (649)
.......+.+-|.+....|. |+..+-..+..++.++..... |+.+++.+.+. -.| ..+..-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33444556666666666553 777777778888888877665 88888887763 224 35555667778899999
Q ss_pred HHHHHHHHHhCC-CCCCh
Q 006343 484 LAEAIDLINSMT-FEPPP 500 (649)
Q Consensus 484 ~~~A~~~~~~~~-~~~~~ 500 (649)
+++|.++++.+. .+|+.
T Consensus 90 Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999876 56654
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.26 E-value=0.39 Score=37.36 Aligned_cols=62 Identities=5% Similarity=-0.109 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEG------LVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
.+..|...+...|++..|..+|++..+.- -.+....+..+..++.+.|++++|..+++.+.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455666666667777776666655421 012234445555555555666666655555554
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.04 E-value=13 Score=41.11 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=133.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC----CCh--hHHHHHHHHHHcCCChHHHHHHHhhCCC-CC----------hhhHHHHHH
Q 006343 242 SGYVHNGEIEEAYRLFERMPG----KDF--VSWTTMITGFSSKGNLEKSIELFNMMPE-KD----------DVTWTAIIS 304 (649)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~ 304 (649)
-+....|+.++++.++..... .+. ..-..+.-+.+.+|..+++..++..... .+ +..-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 456778888889999988775 222 2333444556666766666665554332 22 112233334
Q ss_pred HHhcCCC-HHHHHHHHHHHHHCCCCCCHHH--HHH--HHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHH--H
Q 006343 305 GFVNNEQ-YEEAFRWFIEMLRKDVRPNQLT--LSS--VLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLY--S 377 (649)
Q Consensus 305 ~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 377 (649)
|++-.|. -+++.+.+..++... +..+ ... +-..+.-.|+.+....++..+.+.. +..+...++.++ .
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 4444443 246667777766532 2221 111 1222334566677777777666532 222333333333 3
Q ss_pred hcCCHHHHHHHHHhcC-CCChH-HHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHH
Q 006343 378 KCGNVVDAYRIFTNID-ERNIV-SYN---SMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGF 452 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 452 (649)
-.|+.+.+..+.+.+. ..+.. -|. ++..+|+..|+.....++++.+.... ..+......+.-++...|..+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 5677777776666654 23332 232 33456777888766666888887641 222222222222344456666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCChhHH
Q 006343 453 IYFKSMKTLYNIEPGPEHYACMVDILGRAGSL-AEAIDLINSMTFEPPPGVW 503 (649)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~-~~A~~~~~~~~~~~~~~~~ 503 (649)
++++.+.+ ...|....-.++.-++.-+|.. .+|.+.+..+...+|..+-
T Consensus 615 rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 615 RIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 66665554 2245554444454444445543 5677777777655555543
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.58 E-value=4.2 Score=41.28 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----C-C----hhHHHHHHHHHHcCCChHHHHHHHhhCCC--------C--Chhh
Q 006343 238 NSLISGYVHNGEIEEAYRLFERMPG----K-D----FVSWTTMITGFSSKGNLEKSIELFNMMPE--------K--DDVT 298 (649)
Q Consensus 238 ~~li~~~~~~g~~~~A~~~~~~m~~----~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~--~~~~ 298 (649)
..|...|...|++.+|.+++..+.. . + ...+..-+..|...+++..|..++.++.. + -...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4466667777777777777766541 1 1 13555667778888888888777766531 1 1235
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH-----HHHHccCChhHHHHHHHHHHHhCCCCcccHHHHH
Q 006343 299 WTAIISGFVNNEQYEEAFRWFIEMLRK-DVRPNQLTLSSVL-----SASAATATLNQGSQIHAHVVKMNMESDVSIQNSL 372 (649)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 372 (649)
+..++..+...+++.+|-+.|.+.... .+.-|...+..++ ............. +.....+....++...+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~-ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQND-LIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHH-HHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHH-HHHHHhhcccccccHHHHHH
Confidence 667777788888998888888877652 1112222222111 1111111122222 22222222223466778888
Q ss_pred HHHHHhc--CCHHHHHHHHHhcCCC
Q 006343 373 VSLYSKC--GNVVDAYRIFTNIDER 395 (649)
Q Consensus 373 ~~~~~~~--g~~~~A~~~~~~~~~~ 395 (649)
+.+|... .+++.+.+.|.....+
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHhchHhhhHHHHHHHHHHhcc
Confidence 8888764 4677777777765543
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.39 E-value=0.9 Score=37.56 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 006343 482 GSLAEAIDLINSMT-F-EPPPGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 482 g~~~~A~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
++.++|.++|+.+. . +.=+.+|-....--.++|+++.|.+++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 55666666665542 0 111667777777777899999999999999998885433
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.80 E-value=11 Score=35.68 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHH----H
Q 006343 244 YVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRW----F 319 (649)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 319 (649)
-...|++=+|.+.++ ++..=|.+.+++++|.+++. .-...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHH
Confidence 344455555555543 44555555666666665532 123334555665554443 4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChh-HHHHHHHHH----HHhC--CCCcccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006343 320 IEMLRKDVRPNQLTLSSVLSASAATATLN-QGSQIHAHV----VKMN--MESDVSIQNSLVSLYSKCGNVVDAYRIFTNI 392 (649)
Q Consensus 320 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (649)
+-..+.+++++......++..+.....-+ .=..+...+ .+.| ..-++.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 44445677888877777777665533211 112222222 3332 2347788899999999999999999988633
Q ss_pred CCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 006343 393 DERNIVSYNSMISGFAQN---GLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTL 461 (649)
Q Consensus 393 ~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 461 (649)
...+...+..|+.-+... |...++--. .-..++. |.-.|++..|...|+...+.
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 333455555555444443 443332111 1122222 44568888888888877653
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.45 E-value=2.5 Score=34.98 Aligned_cols=100 Identities=10% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCCChHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HhhccCcHHHHHHHHHHhH
Q 006343 393 DERNIVSYNSMISGFAQNGLG------EEALNLFRKMKDEGLVPNQI----TFLSVLS---ACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~~~ 459 (649)
.+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...+++++|+++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366788898888888888998 8888999988875 677631 1111111 1233489999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 460 TLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
+. +-.- ...|......=.|+|+++.|.+++....
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 74 2222 6677777777789999999999998754
No 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.40 E-value=9 Score=33.85 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006343 394 ERNIVSYNSMISGFAQNGLGEEALNLFRKMKD 425 (649)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 425 (649)
.++...-...+.++...+. .++...+.++.+
T Consensus 154 d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444444444443 344444444444
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.25 E-value=1.7 Score=36.70 Aligned_cols=113 Identities=6% Similarity=-0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-----CCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH-H
Q 006343 370 NSLVSLYSKCGNVVDAYRIFTNID-----ERNI-------VSYNSMISGFAQNGLGEEALNLFRKMKDEG-LVPNQIT-F 435 (649)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t-~ 435 (649)
..-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++.++.. .-|...+ .
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334556666677777766655533 2332 144555666677777777777777754421 1111111 0
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 006343 436 LSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMTF 496 (649)
Q Consensus 436 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 496 (649)
.++-. . .... ......++.+.---+...|...|++++|+..++.+|.
T Consensus 104 ~~~~~---~-ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTGN---S-ASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc---c-CCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 0 0000 0001223344545577777888888888888888873
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.10 E-value=6.5 Score=31.81 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=47.3
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 006343 378 KCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKS 457 (649)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 457 (649)
+||++......+-.+.. +....+.-+..+..+|+-+.-.+++..+... .+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555554444444332 3334455556666677777666666664332 356666666677777777777777777666
Q ss_pred hHH
Q 006343 458 MKT 460 (649)
Q Consensus 458 ~~~ 460 (649)
+.+
T Consensus 151 AC~ 153 (172)
T 1wy6_A 151 ACK 153 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 244
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.09 E-value=9.1 Score=33.46 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=19.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCC
Q 006343 229 MSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGN 280 (649)
Q Consensus 229 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 280 (649)
+..++...-...+.++.+.|..+....+...+..++..+-...+.++.+.+.
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3334443333444444444433222222333333444444444444444443
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.91 E-value=14 Score=35.34 Aligned_cols=165 Identities=10% Similarity=0.070 Sum_probs=88.8
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHccC
Q 006343 270 TMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWF----IEMLRKDVRPNQLTLSSVLSASAATA 345 (649)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~ 345 (649)
++..=|.+.+++++|.+++- .-...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 34444555555555555431 1223344455554443333 33444567777777777776665554
Q ss_pred ChhHH-HHHH----HHHHHhC--CCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006343 346 TLNQG-SQIH----AHVVKMN--MESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALN 418 (649)
Q Consensus 346 ~~~~a-~~~~----~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (649)
.-+-. ..+. ..-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..|+.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 32111 1122 2223333 345778888899999999999999998843222233566555544444333211
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 419 LFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 419 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+|...-..++. |.-.+++..|...|+...+
T Consensus 186 -----------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12222223333 4455788888887766654
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.63 E-value=5.2 Score=32.72 Aligned_cols=71 Identities=10% Similarity=-0.045 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 006343 465 EPGPEHYACMVDILGRAGSLA---EAIDLINSMT-FEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSAT 535 (649)
Q Consensus 465 ~p~~~~~~~l~~~l~~~g~~~---~A~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (649)
.|+..+--.+..++.+....+ ++..+++++. ..|+ -...--|.-++.+.|+++.|++..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 466777666777777776554 4555555543 2332 223445666777888888888888888888885533
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.20 E-value=3.3 Score=38.11 Aligned_cols=125 Identities=13% Similarity=0.011 Sum_probs=72.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 006343 406 GFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLA 485 (649)
Q Consensus 406 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~ 485 (649)
...+.|..++|+.....-++.. +-|...-..++.-++-.|++++|.+-++...+ +.|+...-..+..-+.++....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHHH
Confidence 4556778888888777777763 44455555666677777888888887777766 4565333222222222222111
Q ss_pred HHHHHHHh--CC-CCCChhHHH-HHHHHHH--hcCChhHHHHHHHHHhccCCCCCch
Q 006343 486 EAIDLINS--MT-FEPPPGVWG-ALLGAGR--THLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 486 ~A~~~~~~--~~-~~~~~~~~~-~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
+ ++|.. .| +--.+.-|. .|+.+.. ..|+.+.|...-.++++.-|..++.
T Consensus 82 ~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 82 K--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp H--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred H--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1 23321 22 111222353 4445543 5688889988888888888866654
No 248
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.74 E-value=12 Score=32.98 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCCh
Q 006343 202 DIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNL 281 (649)
Q Consensus 202 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 281 (649)
+..+-...+..+.+.|+.+....+.+.+..++...-...+.++.+.|..+..-.+...+..++..+-...+.++.+.|..
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 33344444444444444333333333344444444444444444444433222333333344444444444444444443
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHhcCC
Q 006343 282 EKSIELFNMMPEKDDVTWTAIISGFVNNE 310 (649)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g 310 (649)
+....+.+.+..++...-...+.++.+.+
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333333333334333333344444433
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.05 E-value=24 Score=35.61 Aligned_cols=184 Identities=10% Similarity=0.094 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHH----HHHhcC
Q 006343 310 EQYEEAFRWFIEMLRK-----DVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVS----LYSKCG 380 (649)
Q Consensus 310 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 380 (649)
|++++|++.+..+.+. +..........++..|...++++.....+..+.+..-.. ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4455555555444321 233345556666667777777666655555444321111 111222222 222222
Q ss_pred C--HHHHHHHHHhcCC---C-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhh
Q 006343 381 N--VVDAYRIFTNIDE---R-------NIVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQ-----ITFLSVLSACN 443 (649)
Q Consensus 381 ~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~ 443 (649)
. .+.-..+.+.... . .......|...|...|++.+|.+++..+...-...+. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2222333333321 1 1123456778888999999999999998753222222 34566677899
Q ss_pred ccCcHHHHHHHHHHhHHh-cCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 006343 444 HVGLVEEGFIYFKSMKTL-YNIEPG----PEHYACMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
..+++.+|..+++.+... ....+. ...|.+++..+...+++.+|...|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887531 222232 456788999999999999998877665
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.00 E-value=1.9 Score=34.83 Aligned_cols=72 Identities=10% Similarity=-0.052 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCch
Q 006343 465 EPGPEHYACMVDILGRAGSLA---EAIDLINSMT-FEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATP 536 (649)
Q Consensus 465 ~p~~~~~~~l~~~l~~~g~~~---~A~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (649)
.|++.+--.+..++.+....+ ++..+++++. ..|. -..+--|.-++.+.|+++.|++..+.+++.+|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 466666666677777766554 4555655543 2332 3355566777778888888888888888888855433
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.37 E-value=7.2 Score=29.43 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006343 274 GFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTL 334 (649)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (649)
.+...|++++|..+.+.+.-||.+.|.+|.. .+.|..+++..-+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455667777777776666667776666544 34566666666666666555 3433333
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.25 E-value=7.8 Score=31.69 Aligned_cols=59 Identities=7% Similarity=-0.154 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCCchHHHHH
Q 006343 498 PPPGVWGALLGAGRTHL---NLDLAKLAAQHLMELEPD-SATPYVVLSDLYSVIGKKRDGNRV 556 (649)
Q Consensus 498 ~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 556 (649)
|+..+--.+..++.+.. +..+|+.+++.++...|. .-..+..|+-.|.+.|++++|.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333333444444333 233455555555554442 233344455555555555555553
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.87 E-value=20 Score=35.30 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhhccCcHHHHHHHHHHhH
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQI-----TFLSVLSACNHVGLVEEGFIYFKSMK 459 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~ 459 (649)
++..|...|++.+|++++.++.+.=-+.|.. .+..-+..|...|++.++..++....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555555421122211 12223334445555555555555443
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.67 E-value=6.9 Score=29.49 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006343 274 GFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTL 334 (649)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (649)
.+...|++++|..+.+.+.-||.+.|.+|.. .+.|..+++..-+.++..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4556777777777777777777777766654 35677777777777776665 4444443
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.05 E-value=5 Score=39.86 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 006343 401 NSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKT----LYNIEPGPEHY 471 (649)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 471 (649)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|++.+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445666777888888888888777652 55677788888888888888888888777543 46888877653
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.20 E-value=7 Score=38.76 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH-----hhCCCccCC
Q 006343 503 WGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK-----KLKRIRKSP 569 (649)
Q Consensus 503 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~ 569 (649)
...++.++...|+.+.+...+++++..+|-+-..|..|..+|...|+..+|.+.++.. .+.|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3445566677888888888888888888877778888888888888888887743333 234665433
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.17 E-value=26 Score=33.19 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCChhhHHHHHHHHhc
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDL----FLSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
+.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566777888899999887532 23345666777666665 3444556888888888877777665
Q ss_pred cCC-----hHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhc---CCH
Q 006343 181 FFR-----YREGVQVHGLVSRFGF--DYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHN---GEI 250 (649)
Q Consensus 181 ~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 250 (649)
... ..-..+...+..+.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 331 1223334444444432 236777888888888888888888877633333566666666655555 555
Q ss_pred HHH
Q 006343 251 EEA 253 (649)
Q Consensus 251 ~~A 253 (649)
.++
T Consensus 185 ~e~ 187 (312)
T 2wpv_A 185 STV 187 (312)
T ss_dssp HHH
T ss_pred chH
Confidence 443
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.87 E-value=4.6 Score=30.65 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 412 LGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
+.-+..+-++.+....+-|+.....+.|.||.+.+++.-|+++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344566667777777889999999999999999999999999999998754 3445667776643
No 259
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.78 E-value=27 Score=32.28 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=31.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChhHHHHHHHHHHc
Q 006343 200 DYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNG--EIEEAYRLFERMPGKDFVSWTTMITGFSS 277 (649)
Q Consensus 200 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 277 (649)
.++..+-...+....+.|+.+....+...+..++...-...+.++...| ..+-...+...+..++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3445555555555555554322222223333344333333333333333 22222222223333444444444444544
Q ss_pred CCChH
Q 006343 278 KGNLE 282 (649)
Q Consensus 278 ~g~~~ 282 (649)
.|..+
T Consensus 219 ~~~~~ 223 (280)
T 1oyz_A 219 RKDKR 223 (280)
T ss_dssp TTCGG
T ss_pred hCCHh
Confidence 44433
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.68 E-value=31 Score=32.93 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHHhc
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLF----LSMRRGGMAFNSITLTILFEACGR 180 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 180 (649)
+.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455667788888888887532 233455667766665554 344556788888877777777765
Q ss_pred cCChH-----HHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 006343 181 FFRYR-----EGVQVHGLVSRFG--FDYDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNG 248 (649)
Q Consensus 181 ~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 248 (649)
...-+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 54311 1223333334444 22356666777777777788888777774222222355655555444443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.08 E-value=7 Score=31.51 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred HHHHHHHHHH-Hc-CCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 006343 415 EALNLFRKMK-DE-GLVPNQITFLSVLSACNHVGL---VEEGFIYFKSMKTLYNIEP--GPEHYACMVDILGRAGSLAEA 487 (649)
Q Consensus 415 ~A~~~~~~m~-~~-g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A 487 (649)
+-+..|++.- .. +-.|+..|--.+..++.++.. ..+|+.+++.+.+. .| ..+.+--|.-++.|.|++++|
T Consensus 21 eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~A 97 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMA 97 (134)
T ss_dssp HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHH
Confidence 3344444433 22 345666666666666766654 55788888888773 25 256666777888999999999
Q ss_pred HHHHHhCC-CCCChh
Q 006343 488 IDLINSMT-FEPPPG 501 (649)
Q Consensus 488 ~~~~~~~~-~~~~~~ 501 (649)
.++.+.+. .+|+..
T Consensus 98 r~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 98 KRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhCCCCH
Confidence 99998865 677654
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.02 E-value=38 Score=33.37 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 006343 301 AIISGFVNNEQYEEAFRWFIEMLRKDVRPNQ-----LTLSSVLSASAATATLNQGSQIHAHVVK 359 (649)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (649)
-++..|...|++.+|++++.++.+.=-+.|. ..+..-+..|...+++..++..+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 5778888999999999988888763112121 1244445556677777777777765543
No 263
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.96 E-value=11 Score=40.72 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=40.8
Q ss_pred hhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 006343 442 CNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSMT 495 (649)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 495 (649)
|...|+++-|+++-++... ..|+ -.+|..|+..|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 5567888888888887776 4565 7788888888888888888888888887
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.62 E-value=26 Score=30.44 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=72.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCC
Q 006343 201 YDIILGNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGN 280 (649)
Q Consensus 201 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 280 (649)
++..+....+..+.+.|..+....+.+.+..++...-...+.++...|..+..-.+...+..++..+-...+.++.+.+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444455555444444444445555555555555556655654444444444555666666666666666666
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 006343 281 LEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT 346 (649)
Q Consensus 281 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 346 (649)
.+....+.+.+..++...-...+.++.+.++. ++...+.++.. .++...-...+.++...|.
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555555555555555444555555555543 33344444433 2444444445555555444
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.44 E-value=9.7 Score=32.08 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=28.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 006343 404 ISGFAQNGLGEEALNLFRKMKDE-GLVPNQ-------ITFLSVLSACNHVGLVEEGFIYFKSMKT 460 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 460 (649)
+..+...|.++.|+-+.+.+... +..|+. .++..+..++.+.|.+.+|..+|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44555566666666655554431 112221 2344445555556666666666655543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.25 E-value=15 Score=27.77 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 347 LNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555444443 22222223345667899999999988888899999887754 4678888888888788777
Q ss_pred CCCCCHHHHHH
Q 006343 427 GLVPNQITFLS 437 (649)
Q Consensus 427 g~~p~~~t~~~ 437 (649)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555544
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.23 E-value=7.5 Score=29.51 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006343 149 FEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSIIT 211 (649)
Q Consensus 149 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 211 (649)
.-+..+-++.+....+.|+.....+.|+||.+.+++..|.++++.++..- .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34566677777777888999999999999999999999999998876543 222445655543
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.17 E-value=16 Score=27.67 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006343 347 LNQGSQIHAHVVKMNMESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERNIVSYNSMISGFAQNGLGEEALNLFRKMKDE 426 (649)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 426 (649)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555554444443 22222223345667899999999988888889888887754 4567777887777777776
Q ss_pred CCCCCHHHHHH
Q 006343 427 GLVPNQITFLS 437 (649)
Q Consensus 427 g~~p~~~t~~~ 437 (649)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.66 E-value=20 Score=41.31 Aligned_cols=167 Identities=10% Similarity=0.049 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 006343 267 SWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT 346 (649)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 346 (649)
....++..+.+.+..+.+..+..-... +...--.+..+|...|++++|.+.|.+.-. |+..+.... ..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~ 881 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AV 881 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SS
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hh
Confidence 344566667778888888776655544 444445667788899999999999987532 222111000 00
Q ss_pred hhHHHHHHHHHHHhC-C-CCcccHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----HHHHHHHHHHHhcCCHHHH
Q 006343 347 LNQGSQIHAHVVKMN-M-ESDVSIQNSLVSLYSKCGNVVDAYRIFTNI----DERNI----VSYNSMISGFAQNGLGEEA 416 (649)
Q Consensus 347 ~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A 416 (649)
... ...+.... . ..-..-|..++..+.+.|..+.+.+.-... .+.+. ..|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 01111110 0 111234566667777777776666554322 22221 2688889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHH
Q 006343 417 LNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEG 451 (649)
Q Consensus 417 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 451 (649)
...+-.+-.... -...+..++..++..|..+.-
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 999888776543 345666677766666655543
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.72 E-value=9.9 Score=30.59 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 413 GEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 413 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
.-+..+-++.+....+-|+.......|.||.+.+++.-|+++|+..+.+ ..+....|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3345556666667788999999999999999999999999999999875 44556677777643
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.11 E-value=51 Score=38.00 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT--FEPP-----PGVWGALLGAGRTHLNLDLAKLAAQHL 526 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~--~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 526 (649)
-|..++.++-+.|.++.+.++.+... ..++ ...|..+..++...|++++|..++-..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 34555566666666666665544321 1111 114555566666666666665555443
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.92 E-value=1.2e+02 Score=33.62 Aligned_cols=397 Identities=11% Similarity=0.016 Sum_probs=192.5
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHc
Q 006343 119 IEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNS-ITLTILFEACGRFFRYREGVQVHGLVSRF 197 (649)
Q Consensus 119 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 197 (649)
..+.++|.+++.| -|..++.+..+.++.+.+.++|..+... .|. ..|-..+. +.+.+.-.--..+.+.+...
T Consensus 219 r~l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFd-L~~~~~Q~fL~~v~~~l~~~ 291 (963)
T 4ady_A 219 RKSFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFD-LVSSASQQLLEILVTELTAQ 291 (963)
T ss_dssp HHHHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHH-HhcccchHHHHHHHHhcccc
Confidence 4467777776533 4778888999999999999999998742 122 22222111 11111111111121111110
Q ss_pred C-------CCCChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChh--hHHHHHHHHHhcCCHHHH-----HHHHhhCC
Q 006343 198 G-------FDYDIILGNSIITMYGRLG--FMDEANKVFSMMSKRDAV--SWNSLISGYVHNGEIEEA-----YRLFERMP 261 (649)
Q Consensus 198 g-------~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A-----~~~~~~m~ 261 (649)
. +-.+..+...-.....+.+ ++..-..+=..+..++.. +-.++..++...|-..+. ..++.+-
T Consensus 292 e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~- 370 (963)
T 4ady_A 292 GYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA- 370 (963)
T ss_dssp TCCHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-
T ss_pred chhHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc-
Confidence 0 1111111111111122222 222222221112223322 234566777777753222 1122211
Q ss_pred CCChhHHHHH-HHHHHcCCChHHHHHHHhhCCCC----C--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCC--CC---
Q 006343 262 GKDFVSWTTM-ITGFSSKGNLEKSIELFNMMPEK----D--DVTWTAIISGFVNNEQYEEAFRWFIEMLRKDV--RP--- 329 (649)
Q Consensus 262 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p--- 329 (649)
.+..-+.++ .-+....|+.++++.+++.-... + +..-..+.-+.+..|..++++.++...+...- .-
T Consensus 371 -~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~ 449 (963)
T 4ady_A 371 -QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDED 449 (963)
T ss_dssp -CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHH
T ss_pred -chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccc
Confidence 222222333 34567889999999999887652 2 22334455567777777788888887765321 00
Q ss_pred CHHH--HHHHHHHHHccCC-hhHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh--HHHHH
Q 006343 330 NQLT--LSSVLSASAATAT-LNQGSQIHAHVVKMNME-SDVSIQNSLVSLYSKCGNVVDAYRIFTNIDE-RNI--VSYNS 402 (649)
Q Consensus 330 ~~~t--~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~ 402 (649)
+... -..+--+.+..|. -+++...+..+....-. ......-+|...+.-.|+.+....++..+.+ .+. .-.-.
T Consensus 450 ~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHH
Confidence 1111 1122122222332 23444444444432211 0011222344455667888777777776542 222 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFL---SVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILG 479 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~ 479 (649)
+.-++...|+.+.+..+.+.+.... .| ..-|. .+.-+|+..|+.....++++.+..+ ...++.....+.-++.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI 605 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhh
Confidence 3445557899998888888887631 22 22333 2344678889988777799888863 2223333333333444
Q ss_pred hcCCHHHHHHHHHhCCCCCChhHHH--HHHHHHHhcCCh-hHHHHHHHHHhc
Q 006343 480 RAGSLAEAIDLINSMTFEPPPGVWG--ALLGAGRTHLNL-DLAKLAAQHLME 528 (649)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~~ 528 (649)
-.|..+.+..+++.+....|+.+-. ++.-+....|+. ..+...+.++..
T Consensus 606 ~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 4666665666666544233433322 222233333432 566667777653
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.74 E-value=29 Score=27.93 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006343 151 DGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIILGNSII 210 (649)
Q Consensus 151 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 210 (649)
+..+-++.+....+.|+.......|++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455666667777888999999999999999999999999998876543 23344565554
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.50 E-value=61 Score=29.78 Aligned_cols=111 Identities=10% Similarity=0.045 Sum_probs=75.0
Q ss_pred HHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCChh----HHHHHHHHHHhcC
Q 006343 440 SACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDILGRAGSLAEAIDLINSMT-FEPPPG----VWGALLGAGRTHL 514 (649)
Q Consensus 440 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~~~----~~~~ll~~~~~~g 514 (649)
....+.|.+++++.....-++. -+-|...-..++.+|+-.|+++.|.+-++... ..|+.. .|..++.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH------
Confidence 3456789999999998888772 34478999999999999999999998887654 445533 3333333
Q ss_pred ChhHHHHHHHHHhc-----cCCCCCchHH---HHHHHHHhcCCchHHHHHHHHHhh
Q 006343 515 NLDLAKLAAQHLME-----LEPDSATPYV---VLSDLYSVIGKKRDGNRVRMKKKL 562 (649)
Q Consensus 515 ~~~~a~~~~~~~~~-----~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~ 562 (649)
|+..=++.+. .-+..+..+. .-++.....|+.++|.++|....+
T Consensus 77 ----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 ----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 3333344444 1222333332 334455667999999999988855
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.58 E-value=1.6e+02 Score=31.31 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=41.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcccHHHHHHHHHHh---
Q 006343 302 IISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATATLNQGSQIHAHVVKMNMESDVSIQNSLVSLYSK--- 378 (649)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 378 (649)
....+.-.|+++.|++++.+. ...+.+.+...+.-+ |-+.....++..- .+ .| ..-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 345556678888888877644 244455554444443 3332211111110 01 11 2225667777775
Q ss_pred cCCHHHHHHHHHhcCCCC
Q 006343 379 CGNVVDAYRIFTNIDERN 396 (649)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~ 396 (649)
..+..+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 578888888877665333
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.08 E-value=1.7e+02 Score=30.84 Aligned_cols=436 Identities=8% Similarity=-0.035 Sum_probs=205.5
Q ss_pred HhcCChhhHHHHHhhcccCCCChh-hHHHHHHHHHccCChHHHHHHHHhcccC--ChhHHHHHHHHHHhCCChhHHHHHh
Q 006343 49 VRRGMFYEAEELYVNMPARWRDSV-CSNALISGYLKVGRCEEAARIFEAMVEK--DVVAWGSMVDGYCKKGRVIEAREIF 125 (649)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f 125 (649)
.+.|++..+..+...+...+..++ .|..+.... ......+....+...... ....-+.-+..+.+.+++...+..+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 346777777776666544222111 222222211 122344444444433211 1122334455667788888888877
Q ss_pred ccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChhh
Q 006343 126 DKMPEKNVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDIIL 205 (649)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 205 (649)
.. +..+...--....+....|+..+|......+-..|-. ....... ++....+.|......+
T Consensus 96 ~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~----------------l~~~~~~~g~lt~~~~ 157 (618)
T 1qsa_A 96 PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDK----------------LFSVWRASGKQDPLAY 157 (618)
T ss_dssp CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHH----------------HHHHHHHTTCSCHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHH----------------HHHHHHHCCCCCHHHH
Confidence 76 3233333344566677788888888877777665522 2222333 3333443333222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHH
Q 006343 206 GNSIITMYGRLGFMDEANKVFSMMSKRDAVSWNSLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSI 285 (649)
Q Consensus 206 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 285 (649)
+. =++.....|+...|..+...+..........++..+..- ..+....... .++...
T Consensus 158 ~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~------------------ 214 (618)
T 1qsa_A 158 LE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFT------------------ 214 (618)
T ss_dssp HH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHH------------------
T ss_pred HH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhh------------------
Confidence 22 234455667777777776666322111112222222111 1111111111 111110
Q ss_pred HHHhhCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHccCChhHHHHHHHHHHHhC
Q 006343 286 ELFNMMPEKDDVTWTAIISGFVNNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSA----SAATATLNQGSQIHAHVVKMN 361 (649)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~~ 361 (649)
.......+.-+.+ .+.+.|..+|....+.. ..+......+-.. ....+...++...+.......
T Consensus 215 ----------~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 215 ----------RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp ----------HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred ----------HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 0011111222222 25566666666655422 2222222222221 222231233333333333222
Q ss_pred CCCcccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006343 362 MESDVSIQNSLVSLYSKCGNVVDAYRIFTNIDERN---IVSYNSMISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSV 438 (649)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 438 (649)
. +.....-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+++... .+|..+
T Consensus 283 ~--~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~ 354 (618)
T 1qsa_A 283 Q--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPM 354 (618)
T ss_dssp C--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHH
T ss_pred C--ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHH
Confidence 2 22223334444556799999999999997532 222223445677889999999999988642 245555
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhcCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 006343 439 LSACNHVGLVEEGFIYFKSMKTLYNIEPG-PE-----HYACMVDILGRAGSLAEAIDLINSMTFEPPPGVWGALLGAGRT 512 (649)
Q Consensus 439 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-----~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~ 512 (649)
+.+ .+.|..-. . ....+.+. .. .-..-+..+.+.|...+|...+..+....+......+......
T Consensus 355 lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~ 425 (618)
T 1qsa_A 355 VAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFN 425 (618)
T ss_dssp HHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 432 22221000 0 00001110 00 1123355677889999998877765433444434445555567
Q ss_pred cCChhHHHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchHHHH
Q 006343 513 HLNLDLAKLAAQHLMELEP---DSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
.|..+.++....+....+. .-|..|..+..-++..-..+...-
T Consensus 426 ~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll 471 (618)
T 1qsa_A 426 NQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYA 471 (618)
T ss_dssp TTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHH
T ss_pred CCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHH
Confidence 8888888877765443220 123345555555555555555443
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.02 E-value=60 Score=30.65 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=31.4
Q ss_pred HhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 492 NSMTFEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 492 ~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
......|. ..++.+-++.+.+++|+..|...+++++++.|.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33334443 335666777788999999999999999999993
No 278
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=59.91 E-value=1e+02 Score=28.12 Aligned_cols=10 Identities=0% Similarity=-0.104 Sum_probs=4.3
Q ss_pred HHHHHHHHhc
Q 006343 519 AKLAAQHLME 528 (649)
Q Consensus 519 a~~~~~~~~~ 528 (649)
+...+.++++
T Consensus 253 ~~~~L~~~l~ 262 (280)
T 1oyz_A 253 LLPVLDTMLY 262 (280)
T ss_dssp GHHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 3444444443
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.79 E-value=37 Score=34.04 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHH--
Q 006343 368 IQNSLVSLYSKCGNVVDAYRIFTNIDE------RNIVSYNSMISGFAQNGLGEEALNLFRKMKD---EGLVPNQITFL-- 436 (649)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~-- 436 (649)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777777777777777776652 2234566677777778888888877777654 22223222111
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhcC
Q 006343 437 SVLSACNHVGLVEEGFIYFKSMKTLYN 463 (649)
Q Consensus 437 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 463 (649)
.-...+...+++..|-..|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111124567888888888777666443
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.17 E-value=42 Score=33.62 Aligned_cols=96 Identities=10% Similarity=-0.041 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHH----H
Q 006343 399 SYNSMISGFAQNGLGEEALNLFRKMKDEGLVPN--QITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHY----A 472 (649)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~ 472 (649)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..|...+++..+..+.+.+.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788999999999999999999998544444 4567788889999999999999999987654334443332 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 006343 473 CMVDILGRAGSLAEAIDLINSM 494 (649)
Q Consensus 473 ~l~~~l~~~g~~~~A~~~~~~~ 494 (649)
+-+-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 3333455778999988877654
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.94 E-value=62 Score=32.99 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCChh------HHH-HHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 468 PEHYACMVDILGRAGSLAEAIDLINSMTFEPPPG------VWG-ALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 468 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~------~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
...+++++..|...+.++.|..++.+..++.... .|. -++......+++.+|.+.+..++..-|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3445566666666666666666666654322111 111 1223344566666666666666655443
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.11 E-value=1e+02 Score=26.90 Aligned_cols=46 Identities=7% Similarity=-0.038 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 006343 516 LDLAKLAAQHLME--LEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKK 561 (649)
Q Consensus 516 ~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (649)
...+..+++.+.. +.-..+..|...+..+...|++.+|.++.+.-.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455554443 333344445555555555555555555444333
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.03 E-value=2.6e+02 Score=29.65 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHhc---CCCHHHH
Q 006343 239 SLISGYVHNGEIEEAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEKDDVTWTAIISGFVN---NEQYEEA 315 (649)
Q Consensus 239 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A 315 (649)
.....+.-.|++|.|++.+-.....+.+.+...+. ..|-+.....++..-......-+..||..|.+ ..++.+|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~---~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLA---SLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHH---HTTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHH---HcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 35566677888999988887662222222222222 22322211111111011112346777777764 6788889
Q ss_pred HHHHHHH
Q 006343 316 FRWFIEM 322 (649)
Q Consensus 316 ~~~~~~m 322 (649)
+++|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 8888776
No 284
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.93 E-value=1.3e+02 Score=25.97 Aligned_cols=72 Identities=11% Similarity=-0.087 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCCChh-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 484 LAEAIDLINSMTFEPPPG-------VWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
++.|+.+++.+..+-|.. +-...+..|...|.+++|.+++++.++-.|++...-..|.++-.+..-+.....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 667788888776333321 112345679999999999999999999888777777777777666555555444
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.40 E-value=1.5e+02 Score=25.86 Aligned_cols=119 Identities=6% Similarity=-0.097 Sum_probs=49.5
Q ss_pred CcchHHHHHHHHHhCCCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHH
Q 006343 5 TSASYNAMITALINNNCSIYEAFEIFATMPMR---NAVSYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISG 80 (649)
Q Consensus 5 ~~~~~~~li~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~ 80 (649)
|.+..+.|.. -++. |+++-...+++.-... +..-+ +.+...+..|+.+-+..+++.-... ..+...-...+..
T Consensus 6 d~~~~~~l~~-A~~~-g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 6 DDYSTWDIVK-ATQY-GIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp SCGGGCCHHH-HHHT-TCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccchHHHH-HHHc-CChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 3333333444 3345 6777777776643322 22111 2333445566665555555443221 0110101122333
Q ss_pred HHccCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChhHHHHHhcc
Q 006343 81 YLKVGRCEEAARIFEAMVEK---DVVAWGSMVDGYCKKGRVIEAREIFDK 127 (649)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~ 127 (649)
.+..|+.+-...+++.-..+ +..-. +.+...++.|+.+-+..+++.
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc
Confidence 34455655555555432211 11111 222333445555555555544
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.31 E-value=86 Score=30.30 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEK---NVVAWTAMVDGYMKVDCFEDGFDLFLSMRRGGMAFNSITLTILFEACGRF 181 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 181 (649)
...++.-|...|+.++|...++++..| ..+.-..+-.++-+.....+....+-.-...++-+.......+...+...
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCHH
Q 006343 182 FR--------YREGVQVHGLVSRFGFDYDIILGNSIITMYGRLGFMDEANKVFSMMSK--RDAVSWNSLISGYVHNGEIE 251 (649)
Q Consensus 182 ~~--------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 251 (649)
.+ ++..-.++..++..++-|-.++....... .-..+.++++.... .....+..+-..+...|-..
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~ 211 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 211 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCCSSS
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCc
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHhcCC--CHHHHHHHHHHHHHCC
Q 006343 252 EAYRLFERMPGKDFVSWTTMITGFSSKGNLEKSIELFNMMPEK---DDVTWTAIISGFVNNE--QYEEAFRWFIEMLRKD 326 (649)
Q Consensus 252 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g 326 (649)
...++-+++ ..++.=|...|+.++|.+.++++..| .......+..++-+.+ ..+...+++..+...|
T Consensus 212 ~veelkkki--------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 212 PVNHLVKEI--------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp CHHHHHHHH--------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHH--------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Q ss_pred CCCCHHHHHHHHHHHHccCChh
Q 006343 327 VRPNQLTLSSVLSASAATATLN 348 (649)
Q Consensus 327 ~~p~~~t~~~ll~~~~~~~~~~ 348 (649)
+-+.......+...+....++.
T Consensus 284 lls~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 284 TITIDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHhh
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.13 E-value=70 Score=28.78 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006343 404 ISGFAQNGLGEEALNLFRKMKD--EGLVP----NQITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPGPEHYACMVDI 477 (649)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (649)
+..+..+.++++|++++++..+ .++++ +.......+..-.....-.-+..+.+.+ . -.+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHHH
Confidence 4556667777777777666544 22222 1111222222211111112222233333 2 14455566667788
Q ss_pred HHhcCCHHHHHHHHHh
Q 006343 478 LGRAGSLAEAIDLINS 493 (649)
Q Consensus 478 l~~~g~~~~A~~~~~~ 493 (649)
+.|.|+.++|.++|=+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888988888887744
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.00 E-value=1.9e+02 Score=26.45 Aligned_cols=45 Identities=4% Similarity=-0.080 Sum_probs=19.1
Q ss_pred ccCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChhHHHHHhcc
Q 006343 83 KVGRCEEAARIFEAMVEKDVVAWGSMVDGYCKKGRVIEAREIFDK 127 (649)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 127 (649)
..|+.+-...+++.-...+..-..+.+...+..|+.+-+..+++.
T Consensus 40 ~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 40 ADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 455555555555443222111112233334445555555555543
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.49 E-value=1.4e+02 Score=26.83 Aligned_cols=25 Identities=4% Similarity=0.044 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCC
Q 006343 106 GSMVDGYCKKGRVIEAREIFDKMPE 130 (649)
Q Consensus 106 ~~li~~~~~~g~~~~A~~~f~~~~~ 130 (649)
++.+...++.|+++....+++.-..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3445555666777776666665443
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.25 E-value=82 Score=25.15 Aligned_cols=61 Identities=5% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCC
Q 006343 269 TTMITGFSSKGNLEKSIELFNMMPEKD---DVTWTAIISGFVNNEQ--YEEAFRWFIEMLRKDVRP 329 (649)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 329 (649)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 334444555555555555555554431 1122333334444322 244556666666555443
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.57 E-value=69 Score=32.67 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhcCChhhHHHHHhhcccC---CCCh--hhH-HHHHHHHHccCChHHHHHHHHhcc
Q 006343 39 VSYAAMITGFVRRGMFYEAEELYVNMPAR---WRDS--VCS-NALISGYLKVGRCEEAARIFEAMV 98 (649)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 98 (649)
+.+|.+++.|...+.++.|..+..+..-. .++. ..| -.+...+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35777777777777888887777766421 1111 122 233455566677777777776654
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.78 E-value=35 Score=25.74 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=26.2
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 006343 116 GRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCFEDG 152 (649)
Q Consensus 116 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 152 (649)
...+.|+++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567777777777777777777777777665655444
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.77 E-value=1.5e+02 Score=25.62 Aligned_cols=64 Identities=8% Similarity=0.140 Sum_probs=43.4
Q ss_pred hHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHhCC
Q 006343 298 TWTAIISGFV---NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT-----LNQGSQIHAHVVKMNM 362 (649)
Q Consensus 298 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 362 (649)
....+|+++. +-.+++.|+-.+-+|++.| .|....-..++.+....|. +..+...++.....|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444566654 5689999999999999999 7777776777777666554 3344444445555554
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.27 E-value=2.8e+02 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCC
Q 006343 105 WGSMVDGYCKKGRVIEAREIFDKMPEKN 132 (649)
Q Consensus 105 ~~~li~~~~~~g~~~~A~~~f~~~~~~~ 132 (649)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567888888899999999999987665
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.03 E-value=1.3e+02 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 006343 140 VDGYMKVDCFEDGFDLFLSMRR 161 (649)
Q Consensus 140 i~~~~~~g~~~~A~~~~~~m~~ 161 (649)
+..+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566677777777777766543
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.89 E-value=76 Score=26.25 Aligned_cols=60 Identities=5% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCCC---hhhHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCC
Q 006343 270 TMITGFSSKGNLEKSIELFNMMPEKD---DVTWTAIISGFVNNEQ--YEEAFRWFIEMLRKDVRP 329 (649)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 329 (649)
.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34444444455555555555444331 1122333333333222 234555566665555433
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.80 E-value=2.4e+02 Score=24.55 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCC
Q 006343 412 LGEEALNLFRKMKDEGLVPNQ-ITFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEP 466 (649)
Q Consensus 412 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 466 (649)
...++.++|..|...|+--.. .-|......+...|++.+|.++|+.-++ .+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 345666677777666655443 3344455555666666666666666555 23444
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.85 E-value=2.1e+02 Score=23.60 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=25.7
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 006343 519 AKLAAQHLME--LEPDSATPYVVLSDLYSVIGKKRDGNRVRMKKKLK 563 (649)
Q Consensus 519 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (649)
+..+++.+.. +.-..+..|...+..+...|++.+|.++.+.-.++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555554 33444555666666666666666666655544443
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.61 E-value=1.3e+02 Score=28.28 Aligned_cols=42 Identities=24% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006343 491 INSMTFEPP--PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPD 532 (649)
Q Consensus 491 ~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (649)
|......|. ..++..-++.+.+++|+..|...+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333334443 335566677788999999999999999999883
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.34 E-value=2.7e+02 Score=24.83 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=106.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhcCChhhHHHHHhhcccC-CCChhhHHHHHHHHHccC
Q 006343 10 NAMITALINNNCSIYEAFEIFATMPMRNAV---SYAAMITGFVRRGMFYEAEELYVNMPAR-WRDSVCSNALISGYLKVG 85 (649)
Q Consensus 10 ~~li~~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~ 85 (649)
++.+..-++. |+++-...+++.-...+.. .-.+.+...+..|+.+-...+++.-... .++..-.+ .+...+..|
T Consensus 6 ~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 83 (285)
T 1wdy_A 6 NHLLIKAVQN-EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHT
T ss_pred chHHHHHHHc-CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcC
Confidence 4555556777 8998888888765443322 1123344455677776655555542221 12222222 333344567
Q ss_pred ChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcc-------------cHHHHHHHHHhcCCh
Q 006343 86 RCEEAARIFEAMVEK---DVVAWGSMVDGYCKKGRVIEAREIFDKMPEKNVV-------------AWTAMVDGYMKVDCF 149 (649)
Q Consensus 86 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------------~~~~li~~~~~~g~~ 149 (649)
+.+-...+++.-... +..-. +.+...++.|+.+-...+++.-..++.. .++.+ ...++.|+.
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~ 161 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-MDAAEKGHV 161 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH-HHHHHHTCH
T ss_pred CHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH-HHHHHcCCH
Confidence 777666666653322 22212 2334445677877777777765443321 22333 333445554
Q ss_pred hHHHHHHHHHHhC-CCCCCh---hhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHH
Q 006343 150 EDGFDLFLSMRRG-GMAFNS---ITLTILFEACGRFFRYREGVQVHGLVSRFGFDYDII--LGNSIITMYGRLGFMDEAN 223 (649)
Q Consensus 150 ~~A~~~~~~m~~~-g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~y~~~g~~~~A~ 223 (649)
+- ++.+.+. |..++. .-.+.+..+ ...+.......+.+.+.+.|..++.. .....+...++.|+.+-+.
T Consensus 162 ~~----v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 162 EV----LKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HH----HHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HH----HHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 43 3333433 444332 222233333 33445445566777777777665432 1223445556677777777
Q ss_pred HHHh
Q 006343 224 KVFS 227 (649)
Q Consensus 224 ~~~~ 227 (649)
.+++
T Consensus 237 ~Ll~ 240 (285)
T 1wdy_A 237 RLLE 240 (285)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6666
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.00 E-value=90 Score=31.81 Aligned_cols=77 Identities=9% Similarity=-0.031 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 006343 470 HYACMVDILGRAGSLAEAIDLINSMT-FEPP-PGVWGALLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSV 546 (649)
Q Consensus 470 ~~~~l~~~l~~~g~~~~A~~~~~~~~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (649)
...+|+|+.......+.|..+|..+. ..|+ ...|+.|+......|+.-.|...|-+.+....-.+.+..+|..++.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34456666666666777777776654 3333 45666666666666666666666666665333266666666665543
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.93 E-value=2.4e+02 Score=31.56 Aligned_cols=33 Identities=12% Similarity=-0.238 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCC
Q 006343 502 VWGALLGAGRTHLNLDLAKLAAQHLME-LEPDSA 534 (649)
Q Consensus 502 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 534 (649)
-|..++..+..++-++.+.+.++.+++ +.++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 566677777788888888888888886 444443
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.55 E-value=2.7e+02 Score=24.16 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 403 MISGFA---QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 403 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
+|+++. +-.+++.|+-++-+|++.| .|..+.-..++.|....|+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 344443 4679999999999999999 8877777777777776665
No 304
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.29 E-value=1.9e+02 Score=22.45 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=13.6
Q ss_pred cCCchHHHHHHHHHhh
Q 006343 547 IGKKRDGNRVRMKKKL 562 (649)
Q Consensus 547 ~g~~~~a~~~~~~~~~ 562 (649)
-..|++|.+++..|++
T Consensus 67 g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 67 GPGWESARQMQQKMKE 82 (116)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH
Confidence 3579999999999986
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.80 E-value=1.7e+02 Score=25.23 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHh---cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 006343 300 TAIISGFV---NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATA 345 (649)
Q Consensus 300 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 345 (649)
..+|+++. +-.+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 56899999999999999998887777767776665554
No 306
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.41 E-value=2.3e+02 Score=24.81 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=45.2
Q ss_pred ChhhHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHhCC
Q 006343 295 DDVTWTAIISGFV---NNEQYEEAFRWFIEMLRKDVRPNQLTLSSVLSASAATAT-----LNQGSQIHAHVVKMNM 362 (649)
Q Consensus 295 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 362 (649)
+......+|+++. +-.+++.|+-.+-+|++.|-.|....-..++.+....|. +..+...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3334455666664 468999999999999999988887777777777666553 3344444444455554
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.08 E-value=2.5e+02 Score=23.43 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 006343 484 LAEAIDLINSMT-FEPPPGVWGALLGAGRTHLNLDLAKLAAQHLME--LEPDSATPYVVLSDLYSVIGKKRDGNRVRMKK 560 (649)
Q Consensus 484 ~~~A~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (649)
++.+...|..-+ ...|+.....-+.--...++ +..+++.+.. +.-..+..|...+..+...|++.+|.+|.+.-
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred hhCCCcc
Q 006343 561 KLKRIRK 567 (649)
Q Consensus 561 ~~~~~~~ 567 (649)
.+++.++
T Consensus 123 i~~~A~P 129 (164)
T 2wvi_A 123 IQQKAEP 129 (164)
T ss_dssp HHTTCBS
T ss_pred HHcCCCc
No 308
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.75 E-value=66 Score=23.87 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=22.7
Q ss_pred hCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCCh
Q 006343 114 KKGRVIEAREIFDKMPEKNVVAWTAMVDGYMKVDCF 149 (649)
Q Consensus 114 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 149 (649)
.....+.|.++++.++.++..++..++.++.+.+..
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 345566667777666666666666666666665543
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.97 E-value=2.3e+02 Score=22.49 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDERNI---VSYNSMISGFAQNGL--GEEALNLFRKMKDEGLVPNQI 433 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 433 (649)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35678888889999999999999875532 234444455555432 356777888887776554443
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.53 E-value=2.3e+02 Score=27.02 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC
Q 006343 207 NSIITMYGRLGFMDEANKVFSMMSK 231 (649)
Q Consensus 207 ~~l~~~y~~~g~~~~A~~~~~~~~~ 231 (649)
..++.-|...|+.++|.+.++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3444455555555555555555543
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.04 E-value=6.9e+02 Score=27.83 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=30.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHhCCCCcc----cHHHHHHHHHHhcC
Q 006343 333 TLSSVLSASAATATLNQGSQIHAHVVKMNMESDV----SIQNSLVSLYSKCG 380 (649)
Q Consensus 333 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 380 (649)
-|..++..+.+.+..+.+.++-..+++.--..|. .+++.+..+++..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4667777777888888888777777664332233 25555666655443
No 312
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=25.89 E-value=97 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEECCEEEEEeeCCCCCCCHHHHHHHHHHH
Q 006343 573 WIILKDKVHLFLAGRKSCLDLKEIEVTLQTI 603 (649)
Q Consensus 573 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l 603 (649)
-|..+|.+|.|..++...|..+++..++...
T Consensus 10 kV~f~ge~~rf~vs~~~~~tweel~~mvk~~ 40 (87)
T 2bkf_A 10 NVTFKNEIQSFLVSDPENTTWADIEAMVKVS 40 (87)
T ss_dssp EEEETTEEEEEEESCGGGCCHHHHHHHHHHH
T ss_pred EEEEcCCeeEEEeccCCCCCHHHHHHHHHHH
Confidence 3788999999999999999999998888754
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.87 E-value=1.6e+02 Score=24.23 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 006343 369 QNSLVSLYSKCGNVVDAYRIFTNIDERNI---VSYNSMISGFAQNGL--GEEALNLFRKMKDEGLVPNQI 433 (649)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 433 (649)
.+.++.-|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35678888889999999999999875532 234444455554322 345677787777776554443
No 314
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.33 E-value=1.4e+02 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.0
Q ss_pred EEEECCEEEEEeeCCCCCCCHHHHHHHHHHH
Q 006343 573 WIILKDKVHLFLAGRKSCLDLKEIEVTLQTI 603 (649)
Q Consensus 573 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l 603 (649)
-|..+|.+|.|.+.+...|..+++..++...
T Consensus 18 kV~f~ge~~rF~Vs~~~~~tweel~~mvk~~ 48 (101)
T 1wj6_A 18 NVTFKNEIQSFLVSDPENTTWADIEAMVKVS 48 (101)
T ss_dssp EEEETTEEEEEEESCTTTSCHHHHHHHHHHH
T ss_pred EEEEcCCeeEEEecCCCCCCHHHHHHHHHHH
Confidence 3788999999999999999999999888754
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.23 E-value=71 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=17.5
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChh
Q 006343 22 SIYEAFEIFATMPMRNAVSYAAMITGFVRRGMFY 55 (649)
Q Consensus 22 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 55 (649)
+.+.|+++++.++.+.+.+|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3445555555555555555555555554444433
No 316
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.96 E-value=4.3e+02 Score=24.87 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 006343 155 LFLSMRRGGMAFNSITLTILFEACGRFFRYREGVQVHGLVSRFGFD 200 (649)
Q Consensus 155 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 200 (649)
++..+.+.|+.|..+++..++..+++.=.++.+..+++.+...|..
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 4444555666666666666666666655566666666666666543
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.47 E-value=3.2e+02 Score=23.69 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC
Q 006343 143 YMKVDCFEDGFDLFLSMRRGGMAFN 167 (649)
Q Consensus 143 ~~~~g~~~~A~~~~~~m~~~g~~p~ 167 (649)
.++.|+.+-...+++.+.+.|..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3445666555555555555554443
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.18 E-value=56 Score=29.51 Aligned_cols=54 Identities=9% Similarity=-0.183 Sum_probs=28.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 006343 141 DGYMKVDCFEDGFDLFLSMRRGGMAFNSIT-------LTILFEACG--RFFRYREGVQVHGLV 194 (649)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~ 194 (649)
...++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+.++.+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334566777777777776666666655332 233333332 445555554444443
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.68 E-value=4e+02 Score=25.15 Aligned_cols=17 Identities=0% Similarity=-0.117 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHhh
Q 006343 212 MYGRLGFMDEANKVFSM 228 (649)
Q Consensus 212 ~y~~~g~~~~A~~~~~~ 228 (649)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445555555555543
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.51 E-value=1.7e+02 Score=23.70 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 006343 413 GEEALNLFRKMKDEGLVPNQITFLSVLSACNH 444 (649)
Q Consensus 413 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 444 (649)
.-.|.++++.+.+.+...+..|....|..+..
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 33344444444443333334443333333333
No 321
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.22 E-value=3.8e+02 Score=23.12 Aligned_cols=18 Identities=6% Similarity=0.143 Sum_probs=10.5
Q ss_pred HHHHHhCCChhHHHHHhc
Q 006343 109 VDGYCKKGRVIEAREIFD 126 (649)
Q Consensus 109 i~~~~~~g~~~~A~~~f~ 126 (649)
+...++.|+.+....+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455677666666655
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.14 E-value=4e+02 Score=25.29 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 006343 400 YNSMISGFA 408 (649)
Q Consensus 400 ~~~li~~~~ 408 (649)
|..++..|.
T Consensus 275 ~~pll~~~~ 283 (339)
T 1ug3_A 275 RAKLLQKYL 283 (339)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 455555555
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.31 E-value=2.6e+02 Score=28.34 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=57.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHH
Q 006343 434 TFLSVLSACNHVGLVEEGFIYFKSMKTLYNIEPG-PEHYACMVDILGRAGSLAEAIDLINSM-T-FEPPPGVWGALLGAG 510 (649)
Q Consensus 434 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~-~~~~~~~~~~ll~~~ 510 (649)
++..|.........++.|..+|..+.. +.|+ ...|+.|+-+....|+.-+|.-.+-+. . ..|-+.++.+|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~---~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 334444444556678899999999887 5675 788999999998899888888776543 3 567788888888877
Q ss_pred Hh
Q 006343 511 RT 512 (649)
Q Consensus 511 ~~ 512 (649)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.82 E-value=2.4e+02 Score=23.01 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 403 MISGFAQNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 334444444444555555555555444455554444444444443
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.75 E-value=3.3e+02 Score=23.52 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=34.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 006343 403 MISGFA---QNGLGEEALNLFRKMKDEGLVPNQITFLSVLSACNHVGL 447 (649)
Q Consensus 403 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 447 (649)
+|+++. +-.+++.|+-++-+|++.|-.|..+.-..++.|....|+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 445554 467899999999999999988877777777766666554
No 326
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.55 E-value=3.2e+02 Score=21.61 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 006343 211 TMYGRLGFMDEANKVFSM 228 (649)
Q Consensus 211 ~~y~~~g~~~~A~~~~~~ 228 (649)
...++.|+.+-+..+++.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHhc
Confidence 334455565555555544
No 327
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.44 E-value=97 Score=16.00 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 006343 593 LKEIEVTLQTISKGTKE 609 (649)
Q Consensus 593 ~~~i~~~l~~l~~~~~~ 609 (649)
.+++|.+|+.|...+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888887766554
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.34 E-value=1.4e+02 Score=26.17 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=28.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 006343 506 LLGAGRTHLNLDLAKLAAQHLMELEPDSATPYVVLSDLYSVIGKKRDGNR 555 (649)
Q Consensus 506 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (649)
.+..|...|.+++|.+++++.++-.|++...-..|.++-.+..-+.....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lq 169 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQ 169 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHH
Confidence 34456666777777777777666555333344455555555444444443
Done!