Query 006345
Match_columns 649
No_of_seqs 353 out of 2657
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 21:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 3E-63 6.5E-68 529.0 -0.1 389 190-636 11-401 (490)
2 COG0484 DnaJ DnaJ-class molecu 100.0 2.1E-38 4.5E-43 336.3 15.1 183 439-641 3-213 (371)
3 PRK14296 chaperone protein Dna 100.0 3.7E-32 8E-37 290.5 12.3 184 439-640 3-221 (372)
4 PRK14282 chaperone protein Dna 100.0 1.2E-31 2.7E-36 285.9 12.2 185 439-640 3-224 (369)
5 PRK14286 chaperone protein Dna 100.0 5.3E-31 1.1E-35 281.5 15.3 179 439-640 3-218 (372)
6 PRK14288 chaperone protein Dna 100.0 4.1E-31 9E-36 282.1 13.5 178 440-640 3-207 (369)
7 PRK14277 chaperone protein Dna 100.0 8.9E-31 1.9E-35 280.9 14.6 187 438-641 3-228 (386)
8 PRK14287 chaperone protein Dna 100.0 1E-30 2.2E-35 279.3 13.8 177 439-639 3-209 (371)
9 PRK14279 chaperone protein Dna 100.0 9.6E-31 2.1E-35 281.3 13.0 181 439-640 8-241 (392)
10 PRK14276 chaperone protein Dna 100.0 1.2E-30 2.5E-35 279.5 12.7 183 439-640 3-218 (380)
11 KOG0712 Molecular chaperone (D 100.0 1.1E-30 2.3E-35 274.6 11.3 176 439-639 3-200 (337)
12 PRK14285 chaperone protein Dna 100.0 2.3E-30 4.9E-35 276.1 13.0 181 440-641 3-215 (365)
13 PRK14298 chaperone protein Dna 100.0 2.1E-30 4.6E-35 277.4 12.8 184 439-641 4-214 (377)
14 PRK14278 chaperone protein Dna 100.0 3.5E-30 7.5E-35 275.8 14.2 171 440-640 3-211 (378)
15 PRK14297 chaperone protein Dna 100.0 4.1E-30 8.8E-35 275.2 14.3 183 440-639 4-219 (380)
16 PRK14280 chaperone protein Dna 100.0 5E-30 1.1E-34 274.3 13.5 183 439-640 3-215 (376)
17 PRK14294 chaperone protein Dna 100.0 1E-29 2.3E-34 270.9 14.7 170 439-641 3-213 (366)
18 PRK14301 chaperone protein Dna 100.0 1.1E-29 2.4E-34 271.4 13.9 182 439-641 3-213 (373)
19 PRK14281 chaperone protein Dna 100.0 1.6E-29 3.4E-34 272.2 14.8 183 440-640 3-234 (397)
20 PRK14284 chaperone protein Dna 100.0 1.2E-29 2.6E-34 272.7 12.5 180 440-640 1-226 (391)
21 PRK14295 chaperone protein Dna 100.0 1.9E-29 4.1E-34 271.1 13.5 180 440-640 9-234 (389)
22 PRK10767 chaperone protein Dna 100.0 2.5E-29 5.5E-34 268.1 14.1 174 439-641 3-211 (371)
23 PTZ00037 DnaJ_C chaperone prot 100.0 1.6E-29 3.4E-34 274.3 12.6 170 440-640 28-223 (421)
24 PRK14283 chaperone protein Dna 100.0 2.7E-29 5.8E-34 268.8 13.2 185 438-641 3-219 (378)
25 TIGR02349 DnaJ_bact chaperone 100.0 3.6E-29 7.8E-34 265.1 13.9 183 441-641 1-216 (354)
26 PRK14289 chaperone protein Dna 100.0 6E-29 1.3E-33 266.6 14.2 184 439-640 4-226 (386)
27 PRK14291 chaperone protein Dna 100.0 7.3E-29 1.6E-33 265.9 13.7 175 440-640 3-223 (382)
28 PRK14300 chaperone protein Dna 100.0 2E-28 4.4E-33 261.6 14.1 172 440-641 3-214 (372)
29 PRK14290 chaperone protein Dna 100.0 2.6E-28 5.6E-33 260.1 14.6 180 440-640 3-220 (365)
30 PRK14293 chaperone protein Dna 100.0 2.2E-28 4.8E-33 261.4 14.1 182 440-640 3-215 (374)
31 PRK14292 chaperone protein Dna 99.9 1.3E-27 2.8E-32 255.0 14.1 179 440-640 2-212 (371)
32 KOG0713 Molecular chaperone (D 99.9 2.1E-23 4.7E-28 218.1 8.6 73 435-509 11-83 (336)
33 KOG0715 Molecular chaperone (D 99.9 4.6E-23 1E-27 214.3 8.0 179 440-641 43-233 (288)
34 KOG0691 Molecular chaperone (D 99.7 2.3E-17 5E-22 172.2 7.4 70 439-510 4-73 (296)
35 PRK14299 chaperone protein Dna 99.7 4.9E-17 1.1E-21 169.1 6.6 68 439-509 3-70 (291)
36 KOG0716 Molecular chaperone (D 99.7 5.1E-17 1.1E-21 166.3 5.9 68 440-509 31-98 (279)
37 PF00226 DnaJ: DnaJ domain; I 99.6 1.6E-16 3.4E-21 129.0 6.0 63 441-505 1-64 (64)
38 KOG0717 Molecular chaperone (D 99.6 3.4E-16 7.5E-21 169.1 7.6 68 440-509 8-76 (508)
39 PF14901 Jiv90: Cleavage induc 99.6 2.4E-16 5.1E-21 139.5 2.6 77 551-636 3-79 (94)
40 PRK10266 curved DNA-binding pr 99.6 1.1E-15 2.3E-20 160.1 6.6 66 440-508 4-69 (306)
41 KOG0718 Molecular chaperone (D 99.6 1.7E-15 3.8E-20 163.8 6.8 68 440-509 9-79 (546)
42 PTZ00341 Ring-infected erythro 99.6 3.7E-15 8E-20 172.5 6.8 70 438-510 571-640 (1136)
43 smart00271 DnaJ DnaJ molecular 99.5 1.3E-14 2.9E-19 115.7 6.6 59 440-500 1-60 (60)
44 COG2214 CbpA DnaJ-class molecu 99.5 1.2E-14 2.5E-19 137.9 6.4 67 439-507 5-72 (237)
45 KOG0719 Molecular chaperone (D 99.5 1.1E-14 2.4E-19 146.7 5.4 70 438-509 12-83 (264)
46 cd06257 DnaJ DnaJ domain or J- 99.5 4.4E-14 9.5E-19 110.7 6.5 55 441-497 1-55 (55)
47 KOG0624 dsRNA-activated protei 99.4 7.3E-14 1.6E-18 147.7 5.6 69 437-507 391-462 (504)
48 TIGR03835 termin_org_DnaJ term 99.4 1.3E-13 2.8E-18 157.0 7.6 67 440-509 2-68 (871)
49 KOG0721 Molecular chaperone (D 99.4 1.4E-13 3.1E-18 137.5 6.2 73 437-511 96-168 (230)
50 PRK05014 hscB co-chaperone Hsc 99.4 6.6E-13 1.4E-17 129.3 6.9 69 440-508 1-74 (171)
51 PHA03102 Small T antigen; Revi 99.4 4.6E-13 9.9E-18 128.6 5.4 65 440-510 5-71 (153)
52 PRK01356 hscB co-chaperone Hsc 99.3 1.6E-12 3.4E-17 126.2 6.8 69 440-508 2-73 (166)
53 PRK03578 hscB co-chaperone Hsc 99.3 1.9E-12 4E-17 126.8 6.8 69 440-508 6-79 (176)
54 PRK00294 hscB co-chaperone Hsc 99.3 2.3E-12 4.9E-17 125.9 7.3 71 439-509 3-78 (173)
55 KOG0550 Molecular chaperone (D 99.3 4.6E-12 1E-16 136.5 6.5 73 435-509 368-441 (486)
56 KOG0714 Molecular chaperone (D 99.2 7.9E-12 1.7E-16 124.6 3.8 69 439-509 2-71 (306)
57 KOG1150 Predicted molecular ch 99.2 9E-12 1.9E-16 123.5 3.5 90 415-506 22-118 (250)
58 KOG0722 Molecular chaperone (D 99.1 2.7E-11 5.8E-16 123.8 2.7 70 440-512 33-102 (329)
59 PRK09430 djlA Dna-J like membr 99.0 2.5E-10 5.4E-15 118.3 6.3 56 440-497 200-262 (267)
60 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.0 4.1E-10 9E-15 93.7 5.2 65 556-635 1-66 (66)
61 PTZ00100 DnaJ chaperone protei 99.0 3.3E-10 7.1E-15 104.5 4.8 51 440-496 65-115 (116)
62 PHA02624 large T antigen; Prov 98.9 5.4E-10 1.2E-14 126.5 4.8 59 440-504 11-71 (647)
63 PRK01773 hscB co-chaperone Hsc 98.9 2.3E-09 5.1E-14 105.0 7.1 70 440-509 2-76 (173)
64 COG5407 SEC63 Preprotein trans 98.8 3.7E-09 8E-14 115.0 4.3 70 439-510 97-171 (610)
65 TIGR00714 hscB Fe-S protein as 98.8 9.2E-09 2E-13 99.1 6.1 57 453-509 2-63 (157)
66 COG5269 ZUO1 Ribosome-associat 98.6 3E-08 6.6E-13 102.5 3.8 69 439-507 42-113 (379)
67 KOG1789 Endocytosis protein RM 98.1 2.3E-06 4.9E-11 100.5 5.4 56 440-498 1281-1338(2235)
68 PLN03165 chaperone protein dna 97.9 1.6E-05 3.4E-10 73.3 5.5 63 551-640 39-101 (111)
69 KOG0568 Molecular chaperone (D 97.6 9.4E-05 2E-09 75.8 5.2 56 440-498 47-103 (342)
70 KOG3192 Mitochondrial J-type c 97.2 0.00036 7.9E-09 67.8 4.3 72 437-508 5-81 (168)
71 KOG0723 Molecular chaperone (D 97.1 0.00093 2E-08 61.4 5.4 51 443-499 59-109 (112)
72 COG1107 Archaea-specific RecJ- 96.6 0.0012 2.7E-08 74.9 2.9 72 554-639 3-82 (715)
73 COG1076 DjlA DnaJ-domain-conta 95.8 0.0052 1.1E-07 60.2 2.5 67 441-507 2-73 (174)
74 KOG0431 Auxilin-like protein a 95.3 0.015 3.3E-07 65.2 4.2 42 454-495 400-448 (453)
75 COG1076 DjlA DnaJ-domain-conta 95.1 0.016 3.4E-07 56.9 3.1 53 440-494 113-172 (174)
76 PF05297 Herpes_LMP1: Herpesvi 94.9 0.0069 1.5E-07 64.1 0.0 83 262-353 81-179 (381)
77 COG0484 DnaJ DnaJ-class molecu 93.8 0.035 7.6E-07 60.9 2.4 51 552-624 158-210 (371)
78 TIGR02642 phage_xxxx uncharact 93.7 0.035 7.7E-07 55.7 1.9 15 626-640 116-130 (186)
79 PRK14279 chaperone protein Dna 92.7 0.055 1.2E-06 59.5 1.9 52 573-645 171-230 (392)
80 COG1107 Archaea-specific RecJ- 92.3 0.074 1.6E-06 61.1 2.1 66 549-645 49-116 (715)
81 PF00684 DnaJ_CXXCXGXG: DnaJ c 91.7 0.13 2.8E-06 43.0 2.3 50 551-621 13-66 (66)
82 PRK14285 chaperone protein Dna 91.3 0.081 1.7E-06 57.7 1.0 51 574-645 145-203 (365)
83 PRK14286 chaperone protein Dna 91.3 0.099 2.1E-06 57.2 1.7 52 573-645 148-207 (372)
84 PTZ00037 DnaJ_C chaperone prot 91.1 0.088 1.9E-06 58.7 1.0 52 574-645 149-212 (421)
85 PRK14278 chaperone protein Dna 90.9 0.093 2E-06 57.5 1.0 51 574-645 138-200 (378)
86 PRK14295 chaperone protein Dna 90.8 0.11 2.5E-06 57.0 1.7 51 574-645 165-223 (389)
87 PRK14294 chaperone protein Dna 90.7 0.12 2.5E-06 56.4 1.6 51 574-645 143-201 (366)
88 PRK14280 chaperone protein Dna 90.7 0.11 2.3E-06 57.0 1.2 51 574-645 142-204 (376)
89 PRK14282 chaperone protein Dna 90.7 0.1 2.2E-06 56.9 1.1 51 574-645 151-213 (369)
90 KOG2813 Predicted molecular ch 90.6 0.15 3.2E-06 55.0 2.1 10 627-636 258-267 (406)
91 PRK14296 chaperone protein Dna 90.5 0.11 2.5E-06 56.7 1.3 50 574-644 148-209 (372)
92 PRK14287 chaperone protein Dna 90.5 0.1 2.3E-06 57.0 1.0 51 574-645 137-199 (371)
93 PRK14297 chaperone protein Dna 90.3 0.13 2.8E-06 56.3 1.5 51 574-645 147-209 (380)
94 KOG2813 Predicted molecular ch 90.3 0.22 4.8E-06 53.8 3.1 24 611-638 235-258 (406)
95 PRK14277 chaperone protein Dna 90.2 0.13 2.8E-06 56.5 1.4 51 574-645 154-216 (386)
96 PRK14276 chaperone protein Dna 90.2 0.11 2.5E-06 56.8 0.9 51 574-645 145-207 (380)
97 PRK14290 chaperone protein Dna 90.1 0.12 2.7E-06 56.2 1.1 50 574-645 148-209 (365)
98 PRK10767 chaperone protein Dna 89.9 0.15 3.3E-06 55.6 1.6 51 574-645 141-199 (371)
99 PRK14300 chaperone protein Dna 89.9 0.21 4.7E-06 54.6 2.8 50 553-624 162-211 (372)
100 PRK14284 chaperone protein Dna 89.4 0.14 3E-06 56.4 0.9 51 574-645 157-215 (391)
101 PRK14298 chaperone protein Dna 89.2 0.14 3.1E-06 56.1 0.8 51 574-645 140-202 (377)
102 PRK14281 chaperone protein Dna 89.0 0.17 3.7E-06 55.8 1.2 50 574-645 162-223 (397)
103 PRK14301 chaperone protein Dna 88.9 0.27 5.8E-06 53.9 2.6 50 553-624 161-210 (373)
104 PRK14283 chaperone protein Dna 88.5 0.19 4.2E-06 55.0 1.2 51 574-645 145-207 (378)
105 TIGR02349 DnaJ_bact chaperone 88.3 0.34 7.4E-06 52.4 2.9 50 553-624 160-213 (354)
106 PRK14288 chaperone protein Dna 88.3 0.32 7E-06 53.2 2.7 50 553-624 156-205 (369)
107 PRK14293 chaperone protein Dna 87.1 0.27 5.9E-06 53.7 1.3 51 574-645 142-204 (374)
108 PRK14291 chaperone protein Dna 86.8 0.5 1.1E-05 51.9 3.1 50 552-624 172-221 (382)
109 PRK14289 chaperone protein Dna 86.8 0.26 5.7E-06 54.1 0.9 52 573-645 152-215 (386)
110 PF03656 Pam16: Pam16; InterP 84.0 1.9 4.1E-05 41.1 5.1 51 443-499 61-111 (127)
111 COG4709 Predicted membrane pro 82.1 18 0.0004 36.9 11.4 40 238-277 82-121 (195)
112 KOG0724 Zuotin and related mol 81.5 1.6 3.4E-05 46.7 4.0 55 454-508 4-62 (335)
113 PRK11644 sensory histidine kin 80.0 47 0.001 37.7 15.1 73 279-354 136-233 (495)
114 PRK14292 chaperone protein Dna 79.7 0.67 1.5E-05 50.6 0.5 52 574-645 138-201 (371)
115 PRK11598 putative metal depend 78.6 13 0.00028 43.3 10.3 38 247-284 51-92 (545)
116 PLN03165 chaperone protein dna 77.6 2.4 5.2E-05 39.6 3.4 45 555-624 54-99 (111)
117 PF09605 Trep_Strep: Hypotheti 77.4 47 0.001 33.3 12.6 61 286-346 58-122 (186)
118 PF14362 DUF4407: Domain of un 77.2 6.4 0.00014 41.6 6.9 20 456-475 155-174 (301)
119 PF11808 DUF3329: Domain of un 76.5 6.6 0.00014 34.9 5.7 29 268-296 11-39 (90)
120 TIGR02642 phage_xxxx uncharact 74.8 2 4.4E-05 43.3 2.3 32 553-597 99-130 (186)
121 PF10011 DUF2254: Predicted me 74.1 1.5E+02 0.0032 32.8 18.6 125 217-348 12-147 (371)
122 KOG0712 Molecular chaperone (D 71.8 1.5 3.2E-05 47.9 0.6 54 573-646 125-191 (337)
123 PF03208 PRA1: PRA1 family pro 71.0 30 0.00065 32.8 9.2 13 297-309 69-81 (153)
124 PRK01766 multidrug efflux prot 69.6 1.8E+02 0.0039 31.9 18.0 42 291-332 353-394 (456)
125 PF08507 COPI_assoc: COPI asso 67.3 1E+02 0.0023 29.1 11.8 24 272-295 57-80 (136)
126 PF03208 PRA1: PRA1 family pro 67.2 23 0.0005 33.6 7.5 35 290-325 100-134 (153)
127 PF09726 Macoilin: Transmembra 67.1 2.1E+02 0.0045 34.7 16.7 54 196-271 42-96 (697)
128 TIGR02185 Trep_Strep conserved 66.5 99 0.0021 31.1 12.1 33 287-319 61-93 (189)
129 PRK11827 hypothetical protein; 63.4 4.8 0.0001 33.9 1.8 35 553-591 8-42 (60)
130 KOG2946 Uncharacterized conser 63.0 6.3 0.00014 41.0 3.0 38 281-321 158-195 (234)
131 KOG3618 Adenylyl cyclase [Gene 63.0 1.1E+02 0.0024 37.6 13.1 132 205-356 70-201 (1318)
132 COG1480 Predicted membrane-ass 62.5 2.2E+02 0.0047 34.5 15.4 78 282-359 350-442 (700)
133 smart00778 Prim_Zn_Ribbon Zinc 61.9 5.1 0.00011 30.6 1.6 31 552-582 2-32 (37)
134 PF08273 Prim_Zn_Ribbon: Zinc- 61.2 4.2 9.1E-05 31.6 1.0 31 552-582 2-33 (40)
135 PF14687 DUF4460: Domain of un 58.0 22 0.00048 33.2 5.4 46 454-499 6-55 (112)
136 TIGR00947 2A73 probable bicarb 57.0 2.4E+02 0.0053 31.6 14.3 24 330-353 205-228 (425)
137 KOG2041 WD40 repeat protein [G 56.8 26 0.00057 42.2 6.8 33 157-189 656-692 (1189)
138 PRK10189 MATE family multidrug 56.2 2.3E+02 0.005 31.9 14.1 19 161-179 146-164 (478)
139 cd03031 GRX_GRX_like Glutaredo 56.1 9.8 0.00021 36.9 2.8 18 554-582 100-117 (147)
140 PRK09598 lipid A phosphoethano 55.3 87 0.0019 36.3 10.7 18 248-265 50-67 (522)
141 PF13446 RPT: A repeated domai 55.3 19 0.00042 29.4 4.1 27 440-468 5-31 (62)
142 PF12036 DUF3522: Protein of u 55.1 49 0.0011 33.2 7.7 23 282-304 115-137 (186)
143 PF04156 IncA: IncA protein; 55.0 60 0.0013 31.8 8.2 15 270-284 18-32 (191)
144 PF12805 FUSC-like: FUSC-like 54.9 37 0.00081 35.6 7.2 20 479-498 239-258 (284)
145 PF11833 DUF3353: Protein of u 54.7 27 0.00058 35.5 5.8 38 453-498 3-40 (194)
146 PF03348 Serinc: Serine incorp 53.7 98 0.0021 35.1 10.5 48 232-279 64-126 (429)
147 cd06181 BI-1-like BAX inhibito 52.2 2.6E+02 0.0055 28.0 16.3 39 225-263 51-90 (212)
148 TIGR00844 c_cpa1 na(+)/h(+) an 52.1 1.4E+02 0.0031 36.6 12.1 10 341-350 361-370 (810)
149 PRK12585 putative monovalent c 51.3 60 0.0013 33.3 7.6 14 255-268 16-29 (197)
150 COG0600 TauC ABC-type nitrate/ 50.3 2.1E+02 0.0046 30.4 11.8 94 215-308 12-127 (258)
151 PRK12287 tqsA pheromone autoin 49.9 3.4E+02 0.0074 29.4 13.7 25 332-356 294-318 (344)
152 PRK00488 pheS phenylalanyl-tRN 49.8 8.1 0.00018 42.4 1.3 33 550-607 257-289 (339)
153 PLN02922 prenyltransferase 48.9 1.4E+02 0.003 32.4 10.4 64 234-304 76-140 (315)
154 PRK13706 conjugal transfer pil 48.6 3.5E+02 0.0075 29.0 12.9 100 214-320 58-170 (248)
155 PHA03239 envelope glycoprotein 47.8 99 0.0021 35.3 9.3 56 246-301 254-309 (429)
156 COG2835 Uncharacterized conser 47.7 11 0.00025 31.8 1.6 35 553-591 8-42 (60)
157 PF11044 TMEMspv1-c74-12: Plec 47.5 19 0.00041 28.9 2.7 23 329-351 3-25 (49)
158 PF01098 FTSW_RODA_SPOVE: Cell 47.4 1.9E+02 0.004 31.5 11.2 33 216-248 68-101 (358)
159 PF03547 Mem_trans: Membrane t 46.7 2.5E+02 0.0054 30.2 12.0 181 247-434 15-211 (385)
160 PF07331 TctB: Tripartite tric 46.7 1.3E+02 0.0029 27.7 8.7 30 288-317 76-105 (141)
161 PF09726 Macoilin: Transmembra 46.6 2.3E+02 0.005 34.3 12.6 50 250-303 51-100 (697)
162 KOG4800 Neuronal membrane glyc 46.1 1.1E+02 0.0023 32.4 8.5 50 248-313 57-106 (248)
163 PRK10209 acid-resistance membr 45.4 2.4E+02 0.0051 28.2 10.8 11 269-279 56-66 (190)
164 PRK10726 hypothetical protein; 44.6 93 0.002 29.1 7.0 63 241-304 40-104 (105)
165 PRK13591 ubiA prenyltransferas 44.1 1.4E+02 0.0029 32.8 9.4 20 286-305 118-137 (307)
166 PRK14559 putative protein seri 43.4 12 0.00025 44.5 1.4 48 554-633 2-49 (645)
167 KOG4453 Predicted ER membrane 42.8 2.1E+02 0.0046 30.5 10.0 120 155-305 62-214 (269)
168 COG0266 Nei Formamidopyrimidin 42.8 33 0.00071 36.8 4.4 29 552-582 244-272 (273)
169 TIGR00927 2A1904 K+-dependent 42.5 39 0.00085 42.0 5.5 21 325-345 1065-1085(1096)
170 TIGR00630 uvra excinuclease AB 42.4 19 0.0004 44.5 2.9 34 576-622 737-770 (924)
171 COG0628 yhhT Predicted permeas 42.1 3.8E+02 0.0082 28.9 12.5 41 330-370 304-344 (355)
172 PF07331 TctB: Tripartite tric 42.0 2.8E+02 0.0061 25.5 11.6 27 206-232 34-60 (141)
173 TIGR02921 PEP_integral PEP-CTE 41.3 1.7E+02 0.0037 35.0 10.0 108 247-366 7-114 (952)
174 TIGR00630 uvra excinuclease AB 40.8 14 0.0003 45.7 1.5 31 611-642 737-776 (924)
175 PRK10907 intramembrane serine 40.6 2.4E+02 0.0053 30.2 10.5 47 205-253 132-178 (276)
176 PF14800 DUF4481: Domain of un 40.3 41 0.00089 36.6 4.7 17 248-264 72-88 (308)
177 cd03031 GRX_GRX_like Glutaredo 40.2 20 0.00042 34.9 2.2 31 551-582 108-140 (147)
178 PRK13387 1,4-dihydroxy-2-napht 40.2 1E+02 0.0022 33.4 7.8 19 287-305 114-132 (317)
179 PRK10160 taurine transporter s 39.7 4.4E+02 0.0096 27.6 12.2 21 268-288 86-106 (275)
180 KOG1287 Amino acid transporter 39.6 3.2E+02 0.0069 31.8 11.8 41 222-262 45-106 (479)
181 PRK11560 phosphoethanolamine t 39.3 2E+02 0.0043 33.9 10.4 43 247-289 49-97 (558)
182 COG2194 Predicted membrane-ass 39.2 6.5E+02 0.014 29.8 14.5 25 267-291 71-95 (555)
183 COG0178 UvrA Excinuclease ATPa 39.0 23 0.00049 43.3 2.8 34 577-623 732-765 (935)
184 TIGR01652 ATPase-Plipid phosph 38.7 5.4E+02 0.012 32.4 14.6 17 111-127 775-791 (1057)
185 PRK07419 1,4-dihydroxy-2-napht 38.7 2.1E+02 0.0045 31.0 9.8 19 287-305 119-137 (304)
186 PRK15033 tricarballylate utili 38.2 4.7E+02 0.01 29.7 12.6 17 249-265 238-254 (389)
187 PF10810 DUF2545: Protein of u 38.1 1.7E+02 0.0036 25.9 7.1 27 258-286 10-36 (80)
188 PF04216 FdhE: Protein involve 38.1 13 0.00028 39.3 0.7 59 553-633 172-246 (290)
189 KOG3359 Dolichyl-phosphate-man 38.0 3.1E+02 0.0066 33.5 11.7 20 325-344 259-278 (723)
190 TIGR00844 c_cpa1 na(+)/h(+) an 37.9 4.4E+02 0.0095 32.7 13.1 17 331-347 331-347 (810)
191 PF03811 Zn_Tnp_IS1: InsA N-te 37.8 24 0.00052 26.8 1.8 32 551-582 3-36 (36)
192 PRK13857 type IV secretion sys 37.6 66 0.0014 30.7 5.0 38 286-323 71-108 (120)
193 TIGR02755 TraX_Ftype type-F co 37.5 4.7E+02 0.01 27.5 11.7 20 214-238 34-53 (224)
194 PF13994 PgaD: PgaD-like prote 37.5 1.2E+02 0.0025 29.0 6.9 21 243-263 14-34 (138)
195 COG1198 PriA Primosomal protei 37.4 34 0.00074 41.3 4.0 53 550-634 432-484 (730)
196 COG3851 UhpB Signal transducti 37.1 1E+02 0.0023 34.9 7.2 30 325-355 204-233 (497)
197 PRK10245 adrA diguanylate cycl 36.7 2E+02 0.0044 31.4 9.5 13 248-260 101-113 (366)
198 PRK05771 V-type ATP synthase s 36.3 5.3E+02 0.011 30.6 13.4 69 235-307 326-414 (646)
199 KOG2824 Glutaredoxin-related p 36.2 42 0.0009 36.2 4.0 51 554-632 230-280 (281)
200 PF12725 DUF3810: Protein of u 36.2 4.8E+02 0.01 28.4 12.1 63 442-505 84-156 (318)
201 TIGR00751 menA 1,4-dihydroxy-2 36.1 2.1E+02 0.0045 30.6 9.2 18 288-305 110-127 (284)
202 PF05915 DUF872: Eukaryotic pr 35.9 99 0.0021 29.1 6.0 7 334-340 94-100 (115)
203 TIGR00955 3a01204 The Eye Pigm 35.7 6.8E+02 0.015 29.4 14.1 11 293-303 453-463 (617)
204 PF04515 Choline_transpo: Plas 35.4 4.1E+02 0.0088 28.1 11.3 46 270-315 25-70 (334)
205 PRK05771 V-type ATP synthase s 35.3 8.2E+02 0.018 29.0 15.5 20 212-231 445-464 (646)
206 KOG0510 Ankyrin repeat protein 35.3 4.3E+02 0.0093 32.9 12.3 93 170-274 572-675 (929)
207 PRK11383 hypothetical protein; 35.1 4.2E+02 0.0092 26.2 10.2 61 246-311 9-84 (145)
208 PF03904 DUF334: Domain of unk 34.9 1.5E+02 0.0032 31.3 7.5 19 333-352 201-219 (230)
209 KOG2824 Glutaredoxin-related p 34.6 29 0.00064 37.3 2.6 37 577-638 231-275 (281)
210 PF03142 Chitin_synth_2: Chiti 34.3 93 0.002 36.4 6.7 9 218-226 374-382 (527)
211 TIGR02872 spore_ytvI sporulati 34.2 2.8E+02 0.006 29.1 9.8 25 331-355 304-328 (341)
212 PF11239 DUF3040: Protein of u 34.1 88 0.0019 27.2 5.1 24 279-302 54-77 (82)
213 PRK02983 lysS lysyl-tRNA synth 34.0 5.5E+02 0.012 32.9 13.6 53 209-262 10-67 (1094)
214 PF11026 DUF2721: Protein of u 33.1 1.3E+02 0.0028 28.5 6.4 29 251-279 61-89 (130)
215 PF04632 FUSC: Fusaric acid re 32.9 8.3E+02 0.018 28.3 14.3 77 203-285 330-408 (650)
216 PRK10794 cell wall shape-deter 32.8 6.3E+02 0.014 28.0 12.6 30 219-248 80-109 (370)
217 PRK10862 SoxR reducing system 32.8 1.5E+02 0.0033 28.9 7.0 12 262-273 76-87 (154)
218 COG4662 TupA ABC-type tungstat 32.6 2.2E+02 0.0047 29.7 8.2 84 244-353 16-99 (227)
219 PF03839 Sec62: Translocation 32.5 1.3E+02 0.0027 31.6 6.7 31 214-245 108-138 (224)
220 COG3086 RseC Positive regulato 32.5 1E+02 0.0022 30.5 5.6 35 260-294 74-110 (150)
221 PHA03237 envelope glycoprotein 32.4 2.1E+02 0.0046 32.7 8.8 70 246-315 248-317 (424)
222 PF06570 DUF1129: Protein of u 32.3 3.1E+02 0.0067 27.7 9.3 11 179-189 35-45 (206)
223 PF07264 EI24: Etoposide-induc 32.2 2.8E+02 0.0061 27.4 8.9 23 246-268 15-38 (219)
224 PRK12887 ubiA tocopherol phyty 32.2 2.4E+02 0.0051 30.5 9.0 18 287-304 120-137 (308)
225 COG5547 Small integral membran 31.8 63 0.0014 27.4 3.5 19 299-317 22-40 (62)
226 TIGR03717 R_switched_YjbE inte 31.8 5.3E+02 0.012 25.8 11.7 60 304-369 94-153 (176)
227 COG1807 ArnT 4-amino-4-deoxy-L 31.8 8.2E+02 0.018 27.9 13.7 13 344-356 206-218 (535)
228 TIGR03663 conserved hypothetic 31.7 7.5E+02 0.016 28.1 13.2 19 271-289 150-168 (439)
229 COG1480 Predicted membrane-ass 31.4 5.6E+02 0.012 31.2 12.3 16 459-475 589-604 (700)
230 PF02673 BacA: Bacitracin resi 31.1 2.6E+02 0.0055 29.7 8.8 26 209-234 36-61 (259)
231 PRK10714 undecaprenyl phosphat 31.0 3.5E+02 0.0075 29.1 10.0 26 267-292 228-253 (325)
232 COG4758 Predicted membrane pro 30.8 3.6E+02 0.0079 28.6 9.6 7 318-324 40-46 (235)
233 PRK00349 uvrA excinuclease ABC 30.7 27 0.00058 43.3 1.7 16 576-598 739-754 (943)
234 KOG0061 Transporter, ABC super 30.6 9.8E+02 0.021 28.4 15.2 149 213-366 360-549 (613)
235 TIGR02210 rodA_shape rod shape 30.2 7.6E+02 0.016 27.0 12.6 29 220-248 66-94 (352)
236 PRK04214 rbn ribonuclease BN/u 30.1 8.2E+02 0.018 27.4 13.0 24 334-357 248-271 (412)
237 PRK13735 conjugal transfer mat 30.1 3.1E+02 0.0066 34.5 10.4 69 296-364 359-427 (942)
238 COG1863 MnhE Multisubunit Na+/ 30.0 2E+02 0.0044 28.5 7.4 24 285-308 22-46 (158)
239 PF07857 DUF1632: CEO family ( 30.0 1E+02 0.0023 32.7 5.7 81 205-306 22-102 (254)
240 TIGR03155 sulfolob_CbsB cytoch 29.9 7.5E+02 0.016 26.9 11.9 43 241-285 42-86 (302)
241 TIGR00540 hemY_coli hemY prote 29.8 1E+02 0.0022 33.9 5.8 26 263-288 1-26 (409)
242 PRK09459 pspG phage shock prot 29.3 2.9E+02 0.0064 24.6 7.3 9 297-305 55-63 (76)
243 TIGR03111 glyc2_xrt_Gpos1 puta 29.3 7.6E+02 0.016 27.6 12.6 33 276-308 329-361 (439)
244 COG3704 VirB6 Type IV secretor 29.3 2.2E+02 0.0048 32.3 8.4 73 257-352 182-254 (406)
245 KOG2592 Tumor differentially e 29.0 98 0.0021 35.1 5.5 68 232-299 68-150 (426)
246 PRK14873 primosome assembly pr 28.8 51 0.0011 39.4 3.6 24 611-637 411-434 (665)
247 PF06738 DUF1212: Protein of u 28.7 4.4E+02 0.0095 25.8 9.6 7 230-236 125-131 (193)
248 PRK05951 ubiA prenyltransferas 28.5 4.3E+02 0.0094 28.1 10.1 18 287-304 116-133 (296)
249 COG1030 NfeD Membrane-bound se 28.5 1.4E+02 0.003 34.2 6.7 14 267-280 237-250 (436)
250 PRK03564 formate dehydrogenase 28.5 40 0.00086 36.8 2.4 18 458-475 102-119 (309)
251 PTZ00370 STEVOR; Provisional 28.5 66 0.0014 34.9 3.9 34 271-304 243-276 (296)
252 COG0534 NorM Na+-driven multid 28.4 7.2E+02 0.016 28.0 12.3 71 200-284 15-85 (455)
253 COG4709 Predicted membrane pro 28.2 6.9E+02 0.015 25.9 12.2 16 304-319 119-134 (195)
254 PF12966 AtpR: N-ATPase, AtpR 28.2 1.7E+02 0.0037 26.0 5.9 54 300-358 15-72 (85)
255 COG1289 Predicted membrane pro 27.9 2.6E+02 0.0057 33.1 9.2 23 287-309 408-430 (674)
256 PRK00635 excinuclease ABC subu 27.9 35 0.00075 45.1 2.1 35 575-622 1607-1641(1809)
257 PRK12287 tqsA pheromone autoin 27.9 5.3E+02 0.011 27.9 10.8 20 337-356 295-314 (344)
258 KOG4112 Signal peptidase subun 27.8 1.2E+02 0.0026 28.0 4.9 22 271-292 30-51 (101)
259 TIGR00577 fpg formamidopyrimid 27.7 59 0.0013 34.4 3.4 27 554-582 246-272 (272)
260 PRK12392 bacteriochlorophyll c 27.6 3E+02 0.0065 30.2 8.9 17 288-304 126-142 (331)
261 PHA03242 envelope glycoprotein 27.4 2.9E+02 0.0063 31.7 8.9 71 246-316 245-315 (428)
262 TIGR00595 priA primosomal prot 27.4 54 0.0012 37.7 3.3 24 612-637 242-265 (505)
263 PLN03211 ABC transporter G-25; 27.2 1E+03 0.023 28.4 13.9 146 194-347 394-578 (659)
264 PF13260 DUF4051: Protein of u 27.1 34 0.00075 27.9 1.2 22 298-323 2-23 (54)
265 KOG2292 Oligosaccharyltransfer 27.0 75 0.0016 37.4 4.3 86 272-357 147-259 (751)
266 KOG2322 N-methyl-D-aspartate r 26.6 8.1E+02 0.018 26.1 11.7 63 219-281 88-152 (237)
267 KOG3882 Tetraspanin family int 26.5 2.5E+02 0.0054 28.4 7.6 18 268-285 54-71 (237)
268 PF06341 DUF1056: Protein of u 26.3 3.9E+02 0.0085 23.0 7.3 40 249-295 6-45 (63)
269 TIGR00870 trp transient-recept 26.3 1.2E+03 0.025 27.9 16.2 24 329-352 586-609 (743)
270 PF13248 zf-ribbon_3: zinc-rib 26.1 36 0.00077 23.7 1.0 21 554-582 3-23 (26)
271 PF10337 DUF2422: Protein of u 26.1 9.8E+02 0.021 27.0 13.9 40 190-229 16-55 (459)
272 PF10947 DUF2628: Protein of u 26.1 4.3E+02 0.0093 23.8 8.3 16 246-261 41-56 (108)
273 COG2194 Predicted membrane-ass 26.1 8.9E+02 0.019 28.7 12.8 13 456-468 357-369 (555)
274 COG5265 ATM1 ABC-type transpor 26.0 2.2E+02 0.0048 32.9 7.6 84 218-311 21-104 (497)
275 TIGR03716 R_switched_YkoY inte 25.8 7.7E+02 0.017 25.7 11.3 34 291-324 58-113 (215)
276 TIGR02235 menA_cyano-plnt 1,4- 25.8 5.5E+02 0.012 27.5 10.3 18 287-304 106-123 (285)
277 KOG4455 Uncharacterized conser 25.7 3.6E+02 0.0077 25.6 7.6 27 305-340 83-109 (110)
278 TIGR01478 STEVOR variant surfa 25.6 81 0.0018 34.2 4.0 33 272-304 248-280 (295)
279 COG5552 Uncharacterized conser 25.6 1.7E+02 0.0038 26.1 5.3 46 439-487 2-47 (88)
280 PLN00012 chlorophyll synthetas 25.4 3.9E+02 0.0085 29.9 9.4 108 258-377 165-280 (375)
281 PF12955 DUF3844: Domain of un 25.3 81 0.0017 29.4 3.4 29 246-274 65-93 (103)
282 PF13719 zinc_ribbon_5: zinc-r 25.1 42 0.00092 25.2 1.3 29 553-582 2-32 (37)
283 PRK10649 hypothetical protein; 24.8 4.3E+02 0.0094 31.1 10.0 119 223-343 49-202 (577)
284 PF14362 DUF4407: Domain of un 24.7 3.4E+02 0.0074 28.7 8.5 22 209-230 8-29 (301)
285 TIGR01473 cyoE_ctaB protoheme 24.7 8E+02 0.017 25.7 11.2 23 220-242 44-66 (280)
286 TIGR01695 mviN integral membra 24.7 7.4E+02 0.016 27.2 11.4 67 298-364 349-421 (502)
287 PLN00136 silicon transporter; 24.6 3.8E+02 0.0083 30.8 9.4 83 286-372 300-400 (482)
288 PF10329 DUF2417: Region of un 24.5 4.2E+02 0.009 28.0 8.8 30 340-369 125-156 (232)
289 PRK14714 DNA polymerase II lar 24.4 47 0.001 42.3 2.3 52 553-637 667-721 (1337)
290 PRK06080 1,4-dihydroxy-2-napht 24.2 5.7E+02 0.012 26.9 10.0 19 287-305 113-131 (293)
291 KOG4665 ATP synthase F0 subuni 24.0 9.2E+02 0.02 25.9 11.5 92 214-307 115-216 (252)
292 PF13398 Peptidase_M50B: Pepti 23.9 7.5E+02 0.016 24.9 12.2 24 296-319 126-149 (200)
293 PF03348 Serinc: Serine incorp 23.6 1.8E+02 0.0039 33.0 6.5 25 280-304 182-206 (429)
294 PRK14397 membrane protein; Pro 23.6 3.3E+02 0.0073 28.5 7.9 108 274-392 105-217 (222)
295 TIGR00595 priA primosomal prot 23.6 60 0.0013 37.3 2.8 26 553-582 222-247 (505)
296 TIGR03097 PEP_O_lig_1 probable 23.5 3.2E+02 0.0069 30.2 8.3 23 330-352 201-223 (402)
297 PF12084 DUF3561: Protein of u 23.4 1.4E+02 0.0031 28.0 4.6 62 242-304 44-107 (107)
298 KOG3142 Prenylated rab accepto 23.4 2.8E+02 0.0061 28.4 7.1 13 296-308 97-109 (187)
299 PF07787 DUF1625: Protein of u 23.3 2.1E+02 0.0045 29.7 6.4 18 208-225 177-194 (248)
300 PF08113 CoxIIa: Cytochrome c 23.3 1.6E+02 0.0035 22.4 4.0 15 287-301 7-21 (34)
301 PF07856 Orai-1: Mediator of C 23.3 1.8E+02 0.0039 29.3 5.7 42 254-299 110-153 (175)
302 PLN03140 ABC transporter G fam 23.2 1.1E+03 0.023 31.4 13.8 15 217-231 1219-1233(1470)
303 COG1287 Uncharacterized membra 23.2 6.1E+02 0.013 31.0 11.1 26 280-305 210-235 (773)
304 PF12351 Fig1: Ca2+ regulator 23.2 7.7E+02 0.017 24.7 10.7 60 247-306 109-168 (182)
305 PF14351 DUF4401: Domain of un 23.2 9.5E+02 0.021 25.8 14.6 113 233-348 163-298 (326)
306 PRK10929 putative mechanosensi 23.0 1.7E+03 0.037 28.8 15.4 156 182-341 433-648 (1109)
307 COG4317 Uncharacterized protei 22.9 1.2E+02 0.0026 27.5 3.9 31 269-299 4-41 (93)
308 PRK10774 cell division protein 22.9 8.8E+02 0.019 27.4 11.6 29 220-248 107-135 (404)
309 KOG4623 Uncharacterized conser 22.9 1.3E+03 0.029 27.4 12.9 34 201-234 178-215 (611)
310 PF11744 ALMT: Aluminium activ 22.8 7.9E+02 0.017 27.9 11.2 14 244-257 37-50 (406)
311 PRK00247 putative inner membra 22.8 3E+02 0.0065 31.5 8.0 18 296-313 250-267 (429)
312 TIGR00917 2A060601 Niemann-Pic 22.7 3.1E+02 0.0068 35.2 8.9 37 282-318 1078-1115(1204)
313 KOG0916 1,3-beta-glucan syntha 22.7 5.8E+02 0.013 33.7 10.8 125 221-353 414-567 (1679)
314 COG5415 Predicted integral mem 22.6 1.9E+02 0.0042 30.3 5.8 101 457-590 106-225 (251)
315 PF07698 7TM-7TMR_HD: 7TM rece 22.6 7.3E+02 0.016 24.2 16.5 57 266-322 63-119 (194)
316 PF03966 Trm112p: Trm112p-like 22.5 35 0.00075 28.7 0.5 19 572-590 50-68 (68)
317 COG4452 CreD Inner membrane pr 22.4 3.9E+02 0.0085 30.5 8.5 52 283-334 349-410 (443)
318 PF07092 DUF1356: Protein of u 22.4 34 0.00073 36.1 0.5 30 607-637 21-50 (238)
319 PF13903 Claudin_2: PMP-22/EMP 22.3 5.2E+02 0.011 23.9 8.4 17 337-353 148-164 (172)
320 PF02535 Zip: ZIP Zinc transpo 22.1 3.7E+02 0.0081 27.9 8.1 62 229-291 211-278 (317)
321 PF06027 DUF914: Eukaryotic pr 22.0 2.9E+02 0.0063 30.5 7.5 20 280-299 261-280 (334)
322 PF07158 MatC_N: Dicarboxylate 21.9 1.8E+02 0.0038 28.8 5.2 58 270-327 8-72 (149)
323 TIGR00997 ispZ intracellular s 21.8 3.1E+02 0.0068 27.7 7.1 35 308-342 54-89 (178)
324 PRK07566 bacteriochlorophyll/c 21.6 5E+02 0.011 28.0 9.1 19 287-305 132-150 (314)
325 PRK00293 dipZ thiol:disulfide 21.6 3.1E+02 0.0066 32.2 8.0 50 273-322 326-380 (571)
326 TIGR01666 YCCS hypothetical me 21.6 2E+02 0.0043 34.8 6.6 41 457-497 272-313 (704)
327 COG4062 MtrB Tetrahydromethano 21.4 83 0.0018 29.3 2.7 20 280-299 79-98 (108)
328 PRK12882 ubiA prenyltransferas 21.3 4.7E+02 0.01 27.3 8.7 19 287-305 105-123 (276)
329 PRK09776 putative diguanylate 21.2 1.6E+03 0.034 27.6 15.7 8 443-450 440-447 (1092)
330 PRK12872 ubiA prenyltransferas 21.2 9.2E+02 0.02 25.0 10.8 21 286-306 103-123 (285)
331 PF14752 RBP_receptor: Retinol 21.1 1.3E+03 0.027 27.9 12.8 45 322-368 466-510 (617)
332 PRK11301 livM leucine/isoleuci 21.0 8.5E+02 0.018 27.6 11.0 58 264-322 117-180 (419)
333 KOG4740 Uncharacterized conser 20.9 1.6E+02 0.0035 34.7 5.4 53 246-299 344-397 (564)
334 PF01594 UPF0118: Domain of un 20.9 9.6E+02 0.021 25.0 14.9 71 288-360 238-320 (327)
335 PF08792 A2L_zn_ribbon: A2L zi 20.9 66 0.0014 24.0 1.6 25 554-582 4-28 (33)
336 COG0815 Lnt Apolipoprotein N-a 20.7 5.8E+02 0.013 29.8 9.9 17 293-309 72-88 (518)
337 COG1295 Rbn Ribonuclease BN fa 20.7 1.1E+03 0.023 25.4 15.1 21 241-261 188-208 (303)
338 PF07295 DUF1451: Protein of u 20.7 84 0.0018 30.8 2.8 14 569-582 106-119 (146)
339 PRK01637 hypothetical protein; 20.7 7.3E+02 0.016 26.2 10.0 16 337-352 244-259 (286)
340 smart00730 PSN Presenilin, sig 20.6 1E+03 0.022 25.1 12.7 10 441-450 169-178 (249)
341 PRK08601 NADH dehydrogenase su 20.6 4E+02 0.0087 31.1 8.6 23 247-269 7-29 (509)
342 TIGR01476 chlor_syn_BchG bacte 20.6 6.5E+02 0.014 26.4 9.6 16 290-305 109-124 (283)
343 KOG0715 Molecular chaperone (D 20.6 42 0.00092 36.0 0.8 9 555-563 205-213 (288)
344 PF06827 zf-FPG_IleRS: Zinc fi 20.6 57 0.0012 23.1 1.2 26 555-582 3-28 (30)
345 PF01529 zf-DHHC: DHHC palmito 20.5 3.3E+02 0.0073 25.8 6.8 18 198-215 68-85 (174)
346 PF01528 Herpes_glycop: Herpes 20.5 1.2E+03 0.027 26.3 12.0 66 246-311 231-296 (374)
347 PF01810 LysE: LysE type trans 20.4 7.8E+02 0.017 23.7 12.2 28 204-231 50-77 (191)
348 KOG1705 Uncharacterized conser 20.3 33 0.00071 31.5 -0.1 61 551-636 18-80 (110)
349 PRK05580 primosome assembly pr 20.3 79 0.0017 37.7 3.0 22 612-635 410-431 (679)
350 PRK10747 putative protoheme IX 20.3 2E+02 0.0044 31.5 6.0 21 263-283 1-21 (398)
351 PF03419 Peptidase_U4: Sporula 20.2 9.5E+02 0.021 25.5 10.8 45 223-267 14-59 (293)
352 PF13829 DUF4191: Domain of un 20.2 1.7E+02 0.0037 30.8 5.0 15 432-446 146-160 (224)
353 PF02659 DUF204: Domain of unk 20.2 4.1E+02 0.0089 21.9 6.4 45 267-317 23-67 (67)
354 TIGR00918 2A060602 The Eukaryo 20.1 3.4E+02 0.0074 34.8 8.4 21 283-303 995-1015(1145)
355 PF05478 Prominin: Prominin; 20.1 1.7E+03 0.036 27.4 15.4 35 288-322 459-493 (806)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-63 Score=528.96 Aligned_cols=389 Identities=41% Similarity=0.694 Sum_probs=315.6
Q ss_pred HHHHHhhhhhhHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 006345 190 LMTNIYNAHDYVSRKVQQVYPVALNHL-GHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (649)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~ 268 (649)
++...++.||.+ .++||.|+..+ +++|++.|++ .+|+||++||||+++|+|++++|+||||+++|.+||.++.|
T Consensus 11 ~~~~~~k~~~~~----~~~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~ 85 (490)
T KOG0720|consen 11 VKLRVYKGRDLV----LTKMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTK 85 (490)
T ss_pred ecccccchhhhh----hhcCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeeccccccccc
Confidence 445566777755 55666666555 5788888877 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhh
Q 006345 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (649)
Q Consensus 269 ~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg 348 (649)
+++.|+++.+++.|.|.++++.+++++|++++|+| +||.++.+-+- .+|+++|+ +.+.|+.|.+.++.+|++
T Consensus 86 ~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~ 157 (490)
T KOG0720|consen 86 FILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWG 157 (490)
T ss_pred cccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhh
Confidence 99999999999999999999999999999999999 99999887777 88999988 778899999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006345 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMT 428 (649)
Q Consensus 349 ~~ls~NlaflS~diL~~lLq~~~~e~~~ss~~eq~~~ss~~~~~fs~eSs~~Ssses~~s~sss~~~~~~sts~~ds~~t 428 (649)
.++.+++.++.-+...+|+...+..+. - ..+ .+..+.+..+.+.++..++..+-.....-+...+
T Consensus 158 ~~~k~l~~~i~l~f~~~f~~~~~~~~~-~----------~r~----l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t 222 (490)
T KOG0720|consen 158 LTLKLLRAVILLDFSIYFERNKIIQQT-A----------DRP----LEPVKDSGAEEGDETVESRDYGCKKEIPVATNAT 222 (490)
T ss_pred hcchhhhhhhhhhcceeeeeehhhHHH-H----------hhh----cchhhhhccccCCCchhcCCcccccccccccchh
Confidence 999999999987777777764444331 0 011 1112222223333333344444444555555666
Q ss_pred c-HHHHHHHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006345 429 S-EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (649)
Q Consensus 429 s-eeev~ril~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~ 507 (649)
+ .+++.|.++..|+|.+|||++ +++.++|||.|||+|...|||||. .|.|+|.|+.|+.|||+|+|+++|+.||.+
T Consensus 223 ~~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 223 SFADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hHHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 6 688999999999999999998 899999999999999999999998 699999999999999999999999999998
Q ss_pred hhhhhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCccceeeeccCccccccCccccccccc
Q 006345 508 LRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 587 (649)
Q Consensus 508 ~~~ee~~~~f~~f~~~~~~~g~~gffg~gfg~~~g~dE~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~A 587 (649)
+.+++.. ++.+...... .+.+.++ ..++|.|++|.++|+|++|.++++.+|||++|+++|||
T Consensus 300 ~~kene~--~~~~~~~~~~-------------~~~~~eE---A~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~A 361 (490)
T KOG0720|consen 300 LKKENEL--HRQVISSLND-------------LQKAVEE---ARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPA 361 (490)
T ss_pred HHHHHHH--HHHHHHHHHH-------------HHHHHHH---HHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcc
Confidence 7765432 2222211110 0000112 27899999999999999999999999999999999999
Q ss_pred cCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceE
Q 006345 588 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLF 636 (649)
Q Consensus 588 kdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~ 636 (649)
|||+-|+|... . ..++.+|+|++++|||+++|++||||+.
T Consensus 362 Kdgdiw~Ek~h----l-----gl~~tyy~c~DgkVYDITeWA~CQ~~~~ 401 (490)
T KOG0720|consen 362 KDGDIWAEKSH----L-----GLTPTYYACMDGKVYDITEWAICQGMAC 401 (490)
T ss_pred ccCCEeeeehh----c-----cccceeeeecCCceEeehhhhhcccccc
Confidence 99999999852 2 2357889999999999999999999875
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=336.28 Aligned_cols=183 Identities=27% Similarity=0.407 Sum_probs=142.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~f~ 518 (649)
.+|||+||||++ +||++||||||||||++||||+|+++++|+++|++|++||||||||+||+.||+++........|.
T Consensus 3 ~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 3 KRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred ccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 479999999999 899999999999999999999999889999999999999999999999999999986542111122
Q ss_pred hhcccccCC-----CCCCCCCCCCC-------CCCCCC----------------CCCCccccccccccccCccceeeecc
Q 006345 519 RFQSASQKN-----GRHGFFGSGYA-------RSEADC----------------DDPFGESRRIACKKCNNFHVWIETKK 570 (649)
Q Consensus 519 ~f~~~~~~~-----g~~gffg~gfg-------~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~k 570 (649)
.+ +....+ -+..+||++.+ +.++.| +..+.+.+.+.|+.|+|+| .+
T Consensus 81 g~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsG-----ak 154 (371)
T COG0484 81 GF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSG-----AK 154 (371)
T ss_pred CC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCC-----CC
Confidence 11 000000 01224433221 112222 2355678899999999998 78
Q ss_pred CccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 571 SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 571 s~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
+++.+.+|+.|+ |+|.+.+..+. |. ++++++|+ .|.|+|.+++++|.+|+|.|++....
T Consensus 155 ~gt~~~tC~tC~-------G~G~v~~~~~~---g~-~~~~~~C~-~C~G~G~~i~~pC~~C~G~G~v~~~~ 213 (371)
T COG0484 155 PGTDPKTCPTCN-------GSGQVRTVQRT---GF-FSFQQTCP-TCNGTGKIIKDPCGKCKGKGRVKKKK 213 (371)
T ss_pred CCCCCCcCCCCC-------CcCeEEEEEee---eE-EEEEEECC-CCccceeECCCCCCCCCCCCeEeeee
Confidence 888999999999 99999886543 33 46788999 89999999999999999999976543
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.7e-32 Score=290.47 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=136.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh--h--
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL--L-- 514 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~--~-- 514 (649)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++...-- .
T Consensus 3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~ 79 (372)
T PRK14296 3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGF 79 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCc
Confidence 479999999999 799999999999999999999997 478999999999999999999999999998643100 0
Q ss_pred ----hHhhhhccccc---C----CCCCCCCCCCCC----CCCCCC----------------CCCCccccccccccccCcc
Q 006345 515 ----DYFRRFQSASQ---K----NGRHGFFGSGYA----RSEADC----------------DDPFGESRRIACKKCNNFH 563 (649)
Q Consensus 515 ----~~f~~f~~~~~---~----~g~~gffg~gfg----~~~g~d----------------E~~f~isr~V~C~kC~GtG 563 (649)
..|..++...+ . .-+..+|+++.+ +.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G 159 (372)
T PRK14296 80 SSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSG 159 (372)
T ss_pred CcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCc
Confidence 00111011000 0 001223443211 112222 1234567789999999998
Q ss_pred ceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 564 VWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 564 ~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
...+....+|+.|+ |+|.+.... ++++ ++++.+.+|+ .|.|.|..+.++|+.|+|.|++...
T Consensus 160 -----~~~~~~~~~C~~C~-------G~G~~~~~~-~~g~-~~~q~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 221 (372)
T PRK14296 160 -----AESNSDIHICNNCH-------GTGEVLVQK-NMGF-FQFQQSAKCN-VCNGAGKIIKNKCKNCKGKGKYLER 221 (372)
T ss_pred -----cCCCCCCccCCCCC-------CCceEEEEE-eccc-eEEEEEecCC-CcCCcceeecccccCCCCceEEEEE
Confidence 56677789999999 999988765 3555 4457888999 8999999999999999999987654
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.2e-31 Score=285.89 Aligned_cols=185 Identities=27% Similarity=0.430 Sum_probs=136.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh----
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL---- 513 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~---- 513 (649)
.+|||+||||++ +|+.+|||+|||+||++||||+|+.+ +.|+++|++|++||+||+||.+|+.||+++.....
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~ 80 (369)
T PRK14282 3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ 80 (369)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence 479999999999 89999999999999999999999764 67899999999999999999999999998642110
Q ss_pred ---------hhHhhhhcccccCCCCCCCCCCCCC-------CCCCCC----------------CCCCccccccccccccC
Q 006345 514 ---------LDYFRRFQSASQKNGRHGFFGSGYA-------RSEADC----------------DDPFGESRRIACKKCNN 561 (649)
Q Consensus 514 ---------~~~f~~f~~~~~~~g~~gffg~gfg-------~~~g~d----------------E~~f~isr~V~C~kC~G 561 (649)
.++|..|.......-+..+|+++.+ +.++.+ +..+.+.+.+.|+.|+|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G 160 (369)
T PRK14282 81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG 160 (369)
T ss_pred cCCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence 0000001000000011223332100 112222 12345678899999999
Q ss_pred ccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 562 tG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
+| ...+....+|+.|+ |+|++.... ++++|++|+ +.+|+ .|.|.|..+.++|..|+|.|++...
T Consensus 161 ~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 224 (369)
T PRK14282 161 TG-----VEPGSGYVTCPKCH-------GTGRIREER-RSFFGVFVS-ERTCE-RCGGTGKIPGEYCHECGGSGRIRRR 224 (369)
T ss_pred cC-----CCCCCCCcCCCCCC-------CcCEEEEEE-EccCcceEE-EEECC-CCCCcceeCCCCCCCCCCceeEEEE
Confidence 98 55667788999999 999988754 567888775 66999 8999999999999999999987653
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=5.3e-31 Score=281.54 Aligned_cols=179 Identities=27% Similarity=0.428 Sum_probs=133.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh------
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------ 512 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee------ 512 (649)
..|||+||||++ +|+.+|||+|||+||++||||+|+.++.|+++|++|++||+||+||.+|+.||+++...-
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (372)
T PRK14286 3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence 369999999999 799999999999999999999998778899999999999999999999999999864210
Q ss_pred ---------------hhhHhhhhcccccCCCCCCCCCCCCCCCCCCC----------------CCCCccccccccccccC
Q 006345 513 ---------------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNN 561 (649)
Q Consensus 513 ---------------~~~~f~~f~~~~~~~g~~gffg~gfg~~~g~d----------------E~~f~isr~V~C~kC~G 561 (649)
..++|+.|+++.. .+. ...+....+.++.+ +..+.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~-~~~-~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G 158 (372)
T PRK14286 81 FGQGAYTDFSDIFGDFGDIFGDFFGGGR-GGG-SGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNG 158 (372)
T ss_pred CCCCCcccccccccchhhHHHHhhCCCc-cCC-CcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcC
Confidence 0012222221100 000 00000001112222 12345678899999999
Q ss_pred ccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 562 tG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
+| ...+....+|+.|+ |+|++.... |++| .+++|+ .|.|.|..+.++|+.|+|.|++...
T Consensus 159 ~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~ 218 (372)
T PRK14286 159 SG-----ASKGSSPTTCPDCG-------GSGQIRRTQ-----GFFS-VATTCP-TCRGKGTVISNPCKTCGGQGLQEKR 218 (372)
T ss_pred CC-----cCCCCCCccCCCCc-------CeEEEEEEe-----ceEE-EEEeCC-CCCceeeEecccCCCCCCCcEEecc
Confidence 98 56666778999999 999887642 5664 677999 8999999999999999999998653
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4.1e-31 Score=282.09 Aligned_cols=178 Identities=26% Similarity=0.418 Sum_probs=128.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---h--h
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE---L--L 514 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee---~--~ 514 (649)
.|||+||||++ +||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.||+.||+++...- . .
T Consensus 3 ~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~ 80 (369)
T PRK14288 3 LSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQ 80 (369)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCc
Confidence 69999999999 799999999999999999999998778899999999999999999999999999864210 0 0
Q ss_pred hHhhhhcccccCCCCCCCCCCC------CCCCCCCC----------------CCCCccccccccccccCccceeeeccCc
Q 006345 515 DYFRRFQSASQKNGRHGFFGSG------YARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSK 572 (649)
Q Consensus 515 ~~f~~f~~~~~~~g~~gffg~g------fg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~ks~ 572 (649)
..|..++.... .-+..+||++ ..+.++.+ +..+.+.+.+.|+.|+|+| ...+
T Consensus 81 ~~~~~~f~~~~-~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~~ 154 (369)
T PRK14288 81 SDFSDFFEDLG-SFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-----AKDK 154 (369)
T ss_pred cccccchhhHH-HHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc-----cCCC
Confidence 00111100000 0000112211 01112222 1133456788999999997 3333
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
...+|+.|+ |.|++.... |++| .+.+|+ .|.|.|.++.++|..|+|.|++...
T Consensus 155 -~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 207 (369)
T PRK14288 155 -ALETCKQCN-------GQGQVFMRQ-----GFMS-FAQTCG-ACQGKGKIIKTPCQACKGKTYILKD 207 (369)
T ss_pred -CCcCCCCCC-------CCcEEEEEe-----ceEE-EEEecC-CCCCCceEccccCccCCCcceEEEE
Confidence 678999999 999887642 4554 556999 8999999999999999999988653
No 7
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=8.9e-31 Score=280.91 Aligned_cols=187 Identities=25% Similarity=0.353 Sum_probs=137.5
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHh
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYF 517 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~f 517 (649)
...|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||+++...--...+
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~ 80 (386)
T PRK14277 3 AKKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGF 80 (386)
T ss_pred CCCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccc
Confidence 3479999999999 89999999999999999999999877889999999999999999999999999986421000000
Q ss_pred hh--hc-cccc-------CCC----CCCCCCCCCC---------CCCCCC----------------CCCCcccccccccc
Q 006345 518 RR--FQ-SASQ-------KNG----RHGFFGSGYA---------RSEADC----------------DDPFGESRRIACKK 558 (649)
Q Consensus 518 ~~--f~-~~~~-------~~g----~~gffg~gfg---------~~~g~d----------------E~~f~isr~V~C~k 558 (649)
.. +. ++.. ..+ +..+|++.|+ +.++.+ +..+.+.+.+.|+.
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~ 160 (386)
T PRK14277 81 GQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDV 160 (386)
T ss_pred ccCCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCC
Confidence 00 00 0000 000 0112221111 112222 12345678899999
Q ss_pred ccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEe
Q 006345 559 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLF 638 (649)
Q Consensus 559 C~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~ 638 (649)
|+|+| ...+....+|+.|+ |+|++.... .+++|++|+. .+|+ .|.|.|..+.++|..|+|.|++.
T Consensus 161 C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~G~~~~~-~~C~-~C~G~G~~~~~~C~~C~G~g~v~ 225 (386)
T PRK14277 161 CKGSG-----AKPGSKPVTCPVCH-------GTGQVRTRQ-NTPFGRIVNI-RTCD-RCHGEGKIITDPCNKCGGTGRIR 225 (386)
T ss_pred CCCCC-----cCCCCCCccCCCCC-------CEEEEEEEE-eccCceEEEE-EECC-CCCcceeeccCCCCCCCCCcEEe
Confidence 99997 55667788999999 999887744 5678888765 6999 89999999999999999999986
Q ss_pred eeh
Q 006345 639 SIL 641 (649)
Q Consensus 639 ~~~ 641 (649)
..+
T Consensus 226 ~~~ 228 (386)
T PRK14277 226 RRR 228 (386)
T ss_pred eee
Confidence 543
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1e-30 Score=279.32 Aligned_cols=177 Identities=25% Similarity=0.381 Sum_probs=135.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh------
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------ 512 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee------ 512 (649)
..|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+++....
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~ 79 (371)
T PRK14287 3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG 79 (371)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC
Confidence 369999999999 899999999999999999999997 47899999999999999999999999999864210
Q ss_pred --------hhhHhhhhcccccCCCCCCCCCCCCCCCCCCC----------------CCCCccccccccccccCccceeee
Q 006345 513 --------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (649)
Q Consensus 513 --------~~~~f~~f~~~~~~~g~~gffg~gfg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T 568 (649)
..++|+.|+++. + + ......+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 ~~~~~f~~~~d~f~~~fgg~----~-~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G----- 148 (371)
T PRK14287 80 GGAGDFGGFSDIFDMFFGGG----G-G-RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG----- 148 (371)
T ss_pred CCCccccchHHHHHhhhccc----c-C-CCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc-----
Confidence 012233222210 0 0 000001112222 1234567889999999997
Q ss_pred ccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEee
Q 006345 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFS 639 (649)
Q Consensus 569 ~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~ 639 (649)
...+..+.+|+.|+ |+|++... +.+++|++++ +.+|+ .|.|.|..+.++|+.|.|.|++..
T Consensus 149 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~ 209 (371)
T PRK14287 149 AKPGTKPETCSHCG-------GSGQLNVE-QNTPFGRVVN-RRVCH-HCEGTGKIIKQKCATCGGKGKVRK 209 (371)
T ss_pred cCCCCCCcccCCCC-------CEEEEEEE-EecCCceEEE-EEeCC-CCCCCCccccccCCCCCCeeEEee
Confidence 55666788999999 99988764 4578888875 67999 899999999999999999998864
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=9.6e-31 Score=281.32 Aligned_cols=181 Identities=27% Similarity=0.441 Sum_probs=133.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hhh--
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--ELL-- 514 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e--e~~-- 514 (649)
.+|||+||||++ +|+.+|||+|||+||++||||+|++++.|.++|++|++||+||+||+||+.||+++... +..
T Consensus 8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~ 85 (392)
T PRK14279 8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG 85 (392)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence 379999999999 79999999999999999999999877899999999999999999999999999986410 000
Q ss_pred ---------hH-----------hhhhccccc---CCC----CCCCCCCCCC------CCCCCC----------------C
Q 006345 515 ---------DY-----------FRRFQSASQ---KNG----RHGFFGSGYA------RSEADC----------------D 545 (649)
Q Consensus 515 ---------~~-----------f~~f~~~~~---~~g----~~gffg~gfg------~~~g~d----------------E 545 (649)
.. |..+++... ..+ +.++|+++.+ +.++.+ +
T Consensus 86 ~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 86 RRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred ccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 00 001110000 000 1122332110 112222 1
Q ss_pred CCCccccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc
Q 006345 546 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 625 (649)
Q Consensus 546 ~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk 625 (649)
..+.+.+.+.|+.|+|+| ...+....+|+.|+ |+|++.... |++ +++++|+ .|.|.|..+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~-~~~~~C~-~C~G~G~~i~ 226 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSG-----ARPGTSPKVCPTCN-------GSGVISRNQ-----GAF-GFSEPCT-DCRGTGSIIE 226 (392)
T ss_pred EEEeeeccccCCCCcccc-----ccCCCCCCCCCCCc-------ceEEEEEEe-----cce-EEEEecC-CCCceeEEeC
Confidence 234567889999999998 56667789999999 999887642 344 3568999 7999999999
Q ss_pred cccccCccceEEeee
Q 006345 626 TDWYICQVNLFLFSI 640 (649)
Q Consensus 626 t~Ca~CqG~G~~~~~ 640 (649)
++|..|.|.|++...
T Consensus 227 ~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 227 DPCEECKGTGVTTRT 241 (392)
T ss_pred CcCCCCCCCeEEEEe
Confidence 999999999998654
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.2e-30 Score=279.54 Aligned_cols=183 Identities=28% Similarity=0.421 Sum_probs=136.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhH--
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDY-- 516 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~-- 516 (649)
..|||+||||++ +||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++... ....
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~-~~~~~~ 78 (380)
T PRK14276 3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG-ANGGFG 78 (380)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc-ccCCCC
Confidence 369999999999 7999999999999999999999974 789999999999999999999999999986421 0000
Q ss_pred -----hhhhcccccCC----CCCCCCCCCC------CCCCCCC----------------CCCCccccccccccccCccce
Q 006345 517 -----FRRFQSASQKN----GRHGFFGSGY------ARSEADC----------------DDPFGESRRIACKKCNNFHVW 565 (649)
Q Consensus 517 -----f~~f~~~~~~~----g~~gffg~gf------g~~~g~d----------------E~~f~isr~V~C~kC~GtG~~ 565 (649)
+..|....... -+..+||++. .+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G-- 156 (380)
T PRK14276 79 GGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSG-- 156 (380)
T ss_pred CCCCCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcc--
Confidence 00000000000 0112333211 0112222 1234567789999999998
Q ss_pred eeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 566 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 566 ~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
...+....+|+.|+ |+|.+... +.+++|++|+ +.+|+ .|.|.|..++++|..|+|.|++...
T Consensus 157 ---~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~ 218 (380)
T PRK14276 157 ---AKPGTSPVTCGKCH-------GSGVITVD-TQTPLGMMRR-QVTCD-VCHGTGKEIKEPCQTCHGTGHEKQA 218 (380)
T ss_pred ---cCCCCCCccCCCCC-------CeeEEEEE-EecCCceEEE-EEECC-CCCCCCccccCCCCCCCCceEEEEE
Confidence 55667788999999 99998775 4567889876 67999 8999999999999999999997543
No 11
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=274.59 Aligned_cols=176 Identities=30% Similarity=0.400 Sum_probs=136.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~f~ 518 (649)
.+.||+||||++ +|+++|||||||+||++||||||+ .|.++|++|.+||||||||+||+.||+++...-...
T Consensus 3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~---~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g--- 74 (337)
T KOG0712|consen 3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNP---DAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG--- 74 (337)
T ss_pred ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc---
Confidence 478999999999 899999999999999999999996 488999999999999999999999999985432100
Q ss_pred hhcccccCCCCCCCCCCCCCC----CCCCC----------------CCCCccccccccccccCccceeeeccCccccccC
Q 006345 519 RFQSASQKNGRHGFFGSGYAR----SEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASARWC 578 (649)
Q Consensus 519 ~f~~~~~~~g~~gffg~gfg~----~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC 578 (649)
..+.+.+++..+|+.++.. .++.+ ..++.++++..|++|.|.| .. ...+..|
T Consensus 75 --~~~~g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG-----gk-sg~~~~C 146 (337)
T KOG0712|consen 75 --GGGGGFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG-----GK-SGSAPKC 146 (337)
T ss_pred --CCCCCCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC-----CC-CCCCCCC
Confidence 0011111122234432211 12222 2466788999999999996 33 3445589
Q ss_pred ccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe--cccccccCccceEEee
Q 006345 579 QECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--NATDWYICQVNLFLFS 639 (649)
Q Consensus 579 ~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~--dkt~Ca~CqG~G~~~~ 639 (649)
+.|+ |+|.... .+.+++||+|+++..|. .|.|++.. +++.|+.|+|.+++..
T Consensus 147 ~~C~-------GsGv~~~-~~~~gPg~~qs~q~~C~-~C~G~G~~~~~kd~C~~C~G~~~v~~ 200 (337)
T KOG0712|consen 147 TTCR-------GSGVQTR-TRQMGPGMVQSPQLVCD-SCNGSGETISLKDRCKTCSGAKVVRE 200 (337)
T ss_pred CCCC-------CCCceeE-EEeccccccccceeEec-cCCCccccccccccCcccccchhhhh
Confidence 9999 9997766 55789999999999999 89999987 6999999999998753
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.3e-30 Score=276.09 Aligned_cols=181 Identities=29% Similarity=0.416 Sum_probs=134.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh-hhHhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-LDYFR 518 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~-~~~f~ 518 (649)
+|||+||||++ +|+.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|+.||+++...-. ...+.
T Consensus 3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~ 80 (365)
T PRK14285 3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFE 80 (365)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCcc
Confidence 69999999999 8999999999999999999999988788999999999999999999999999998643100 00000
Q ss_pred hhccccc--------C-CCCCCCCCCCCC------CCCCCC----------------CCCCccccccccccccCccceee
Q 006345 519 RFQSASQ--------K-NGRHGFFGSGYA------RSEADC----------------DDPFGESRRIACKKCNNFHVWIE 567 (649)
Q Consensus 519 ~f~~~~~--------~-~g~~gffg~gfg------~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~ 567 (649)
.|.++.. . .-+..+|+++.+ +.++.+ +..+.+++.+.|+.|+|+|
T Consensus 81 ~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G---- 156 (365)
T PRK14285 81 GFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK---- 156 (365)
T ss_pred ccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc----
Confidence 0000000 0 001123332111 112222 1234567889999999998
Q ss_pred eccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 568 TKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 568 T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
...+.....|+.|+ |+|++.. .+|++ +++.+|+ .|.|.|..+.++|..|+|.|++...+
T Consensus 157 -~~~~~~~~~C~~C~-------G~G~~~~-----~~G~~-~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 157 -SEKGTSPSICNMCN-------GSGRVMQ-----GGGFF-RVTTTCP-KCYGNGKIISNPCKSCKGKGSLKKKE 215 (365)
T ss_pred -cCCCCCCccCCCcc-------CceeEEe-----cCcee-EEeeecC-CCCCcccccCCCCCCCCCCCEEeccE
Confidence 56677788999999 9998765 24676 5788999 89999999999999999999886543
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.1e-30 Score=277.40 Aligned_cols=184 Identities=27% Similarity=0.413 Sum_probs=136.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~f~ 518 (649)
.+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+++... ....+.
T Consensus 4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g-~~~~~~ 79 (377)
T PRK14298 4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG-IDNQYS 79 (377)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc-cccccC
Confidence 369999999999 799999999999999999999997 4789999999999999999999999999986421 000000
Q ss_pred --hhcccccCCC----CCCCCCCCC-----CCCCCCC----------------CCCCccccccccccccCccceeeeccC
Q 006345 519 --RFQSASQKNG----RHGFFGSGY-----ARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKS 571 (649)
Q Consensus 519 --~f~~~~~~~g----~~gffg~gf-----g~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~ks 571 (649)
..+...+..+ +..+||++. ++.++.+ +..+.+.+.+.|+.|+|+| .+.
T Consensus 80 ~~~~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~ 154 (377)
T PRK14298 80 AEDIFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTG-----AKP 154 (377)
T ss_pred cccccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCc-----ccC
Confidence 0000000000 122333211 1112222 1234567889999999998 566
Q ss_pred ccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 572 KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 572 ~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
+..+.+|+.|+ |+|++....+ .++|+ ++++.+|+ .|.|.|..+.++|..|.|.|++...+
T Consensus 155 ~~~~~~C~~C~-------G~G~~~~~~~-~~~g~-~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 214 (377)
T PRK14298 155 GTSPKRCPTCG-------GTGQVTTTRS-TPLGQ-FVTTTTCS-TCHGRGQVIESPCPVCSGTGKVRKTR 214 (377)
T ss_pred CCCCCcCCCCC-------CccEEEEEEe-cCcee-EEEEEeCC-CCCCCCcccCCCCCCCCCccEEEEEE
Confidence 77788999999 9999887654 45555 46889999 89999999999999999999986543
No 14
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.5e-30 Score=275.80 Aligned_cols=171 Identities=30% Similarity=0.444 Sum_probs=134.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee------- 512 (649)
+|||+||||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+++....
T Consensus 3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~ 79 (378)
T PRK14278 3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGG 79 (378)
T ss_pred CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCC
Confidence 69999999999 799999999999999999999997 58899999999999999999999999999864210
Q ss_pred --------hhhHhhhhcccccCCCCCCCCCCCC-------CCCCCCC----------------CCCCccccccccccccC
Q 006345 513 --------LLDYFRRFQSASQKNGRHGFFGSGY-------ARSEADC----------------DDPFGESRRIACKKCNN 561 (649)
Q Consensus 513 --------~~~~f~~f~~~~~~~g~~gffg~gf-------g~~~g~d----------------E~~f~isr~V~C~kC~G 561 (649)
..++|.. ||+++. .+.++.+ +..+.+.+.+.|+.|+|
T Consensus 80 g~~~~f~~~~d~f~~------------ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G 147 (378)
T PRK14278 80 GFGGGFGGLGDVFEA------------FFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHG 147 (378)
T ss_pred CCCcCcCchhHHHHH------------HhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcC
Confidence 0012222 233210 1112222 12345678899999999
Q ss_pred ccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 562 tG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
+| ...+..+.+|+.|+ |+|++.... ..++|++|+ +.+|+ .|.|.|.++.++|+.|.|.|++...
T Consensus 148 ~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 211 (378)
T PRK14278 148 KG-----TAGDSKPVTCDTCG-------GRGEVQTVQ-RSFLGQVMT-SRPCP-TCRGVGEVIPDPCHECAGDGRVRAR 211 (378)
T ss_pred cc-----CCCCCCceecCCcc-------CceEEEEEE-eccceeEEE-EEECC-CCCccceeeCCCCCCCCCceeEecc
Confidence 98 56677788999999 999987754 456778764 56999 8999999999999999999998654
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4.1e-30 Score=275.23 Aligned_cols=183 Identities=27% Similarity=0.439 Sum_probs=134.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh--hh--
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL--LD-- 515 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~--~~-- 515 (649)
.|||+||||++ +|+.+|||+|||+||++||||+++.++.|+++|++|++||+||+||.+|+.||+++...-- ..
T Consensus 4 ~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~ 81 (380)
T PRK14297 4 KDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFG 81 (380)
T ss_pred CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCC
Confidence 69999999999 7999999999999999999999987788999999999999999999999999998642100 00
Q ss_pred --Hhhhhccc-c-cC-CCCCCCCCCCC--------CCCCCCC----------------CCCCccccccccccccCcccee
Q 006345 516 --YFRRFQSA-S-QK-NGRHGFFGSGY--------ARSEADC----------------DDPFGESRRIACKKCNNFHVWI 566 (649)
Q Consensus 516 --~f~~f~~~-~-~~-~g~~gffg~gf--------g~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~ 566 (649)
.|..|... . .. .-+..+|++++ .+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G--- 158 (380)
T PRK14297 82 SGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTG--- 158 (380)
T ss_pred CCCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCccccc---
Confidence 00000000 0 00 00111233211 1112222 1234567889999999998
Q ss_pred eeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEee
Q 006345 567 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFS 639 (649)
Q Consensus 567 ~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~ 639 (649)
..++.....|+.|+ |.|++... +..++|++| .+.+|+ .|.|.|..+.++|..|+|.|++..
T Consensus 159 --~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~ 219 (380)
T PRK14297 159 --AKPGTSPKTCDKCG-------GTGQIRVQ-RNTPLGSFV-STTTCD-KCGGSGKVIEDPCNKCHGKGKVRK 219 (380)
T ss_pred --ccCCCcCccCCCcc-------CeEEEEEE-EEcCCceeE-EEEeCC-CCCCCceEcCCCCCCCCCCeEEEe
Confidence 45666678999999 99988775 456777765 578999 799999999999999999997643
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=5e-30 Score=274.33 Aligned_cols=183 Identities=27% Similarity=0.364 Sum_probs=135.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~~~f~ 518 (649)
..|||+||||++ +|+.+|||+|||+||++||||+++. +.|+++|++|++||+||+||.+|+.||+++... ....+.
T Consensus 3 ~~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~-~~~~~~ 78 (376)
T PRK14280 3 KRDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG-PNQGFG 78 (376)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc-cccCcC
Confidence 369999999999 7999999999999999999999974 789999999999999999999999999986421 000000
Q ss_pred -------hhcccccC-CCCCCCCCCCC------CCCCCCC----------------CCCCccccccccccccCccceeee
Q 006345 519 -------RFQSASQK-NGRHGFFGSGY------ARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (649)
Q Consensus 519 -------~f~~~~~~-~g~~gffg~gf------g~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T 568 (649)
.|.++... .-+..+||++. .+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G----- 153 (376)
T PRK14280 79 GGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSG----- 153 (376)
T ss_pred CCCCCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcc-----
Confidence 00000000 00112333211 1112222 1244567889999999998
Q ss_pred ccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 569 ~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
...+.....|+.|+ |+|++... +..++|++| .+.+|+ .|.|.|..+.++|..|.|.|++...
T Consensus 154 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 215 (376)
T PRK14280 154 AKPGTSKETCSHCG-------GSGQVSVE-QNTPFGRVV-NRQTCP-HCNGTGQEIKEKCPTCHGKGKVRKR 215 (376)
T ss_pred cCCCCCCccCCCCC-------CEEEEEEE-eecCCceEE-EEEEcC-CCCCCCceecCCCCCCCCceEEEEE
Confidence 55667788999999 99988774 456778876 467999 8999999999999999999998654
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1e-29 Score=270.89 Aligned_cols=170 Identities=31% Similarity=0.478 Sum_probs=132.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh------
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------ 512 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee------ 512 (649)
.+|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||+++...-
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~ 80 (366)
T PRK14294 3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS 80 (366)
T ss_pred CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence 479999999999 799999999999999999999998778899999999999999999999999999864210
Q ss_pred -----------hhhHhhhhcccccCCCCCCCCC-CCC-------CCCCCCC----------------CCCCccccccccc
Q 006345 513 -----------LLDYFRRFQSASQKNGRHGFFG-SGY-------ARSEADC----------------DDPFGESRRIACK 557 (649)
Q Consensus 513 -----------~~~~f~~f~~~~~~~g~~gffg-~gf-------g~~~g~d----------------E~~f~isr~V~C~ 557 (649)
..++|.. +|+ ++. .+.++.+ +..+.+.+.+.|+
T Consensus 81 ~~~~~~~~~~~~~d~f~~------------~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~ 148 (366)
T PRK14294 81 GFSGFDDIFSSFGDIFED------------FFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCE 148 (366)
T ss_pred CcCccccchhhhhhhHHH------------hhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCC
Confidence 0011121 222 110 1112222 1134567789999
Q ss_pred cccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEE
Q 006345 558 KCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFL 637 (649)
Q Consensus 558 kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~ 637 (649)
.|+|+| ...+.....|+.|+ |+|.+.+.. |++| ++++|+ .|.|.|..+.++|..|.|.|++
T Consensus 149 ~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v 209 (366)
T PRK14294 149 ECHGSG-----CEPGTSPTTCPQCG-------GSGQVTQSQ-----GFFS-IRTTCP-RCRGMGKVIVSPCKTCHGQGRV 209 (366)
T ss_pred CCCCcc-----ccCCCCcccCCCcC-------CeEEEEEEe-----eeEE-EEeeCC-CCCCcCeecCcCCCCCCCceEe
Confidence 999998 55666778999999 999886532 5665 688999 8999999999999999999998
Q ss_pred eeeh
Q 006345 638 FSIL 641 (649)
Q Consensus 638 ~~~~ 641 (649)
...+
T Consensus 210 ~~~~ 213 (366)
T PRK14294 210 RVSK 213 (366)
T ss_pred ecce
Confidence 6543
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.1e-29 Score=271.43 Aligned_cols=182 Identities=30% Similarity=0.447 Sum_probs=132.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh-hhHh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-LDYF 517 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~-~~~f 517 (649)
..|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||+++...-. ...+
T Consensus 3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF 80 (373)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence 379999999999 7999999999999999999999987788999999999999999999999999998642100 0000
Q ss_pred hhhccc---c-cC-CCCCCCCCC-C------CCCCCCCC----------------CCCCccccccccccccCccceeeec
Q 006345 518 RRFQSA---S-QK-NGRHGFFGS-G------YARSEADC----------------DDPFGESRRIACKKCNNFHVWIETK 569 (649)
Q Consensus 518 ~~f~~~---~-~~-~g~~gffg~-g------fg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~ 569 (649)
..|... . .. .-+..+|+. + ..+.++.+ +..+.+.+.+.|+.|+|+| .
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G-----~ 155 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG-----A 155 (373)
T ss_pred CCcccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc-----c
Confidence 000000 0 00 000111221 0 01112222 1234567789999999998 5
Q ss_pred cCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 570 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 570 ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
..+..+..|+.|+ |+|.+.... |++| .+.+|+ .|.|.|.++.++|+.|+|.|++....
T Consensus 156 ~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 156 APGTSPETCRHCG-------GSGQVRQSQ-----GFFQ-IAVPCP-VCRGEGRVITHPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCCcccCCcc-------CeeEEEEEe-----eeEE-EEEeCC-CCCceeeecCCCCCCCCCCceeccce
Confidence 6667778999999 999887532 5554 488999 89999999999999999999986543
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.6e-29 Score=272.24 Aligned_cols=183 Identities=30% Similarity=0.488 Sum_probs=134.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee------- 512 (649)
.|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||++|+||.+|+.||+++...-
T Consensus 3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~ 80 (397)
T PRK14281 3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASG 80 (397)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccC
Confidence 69999999999 799999999999999999999998778899999999999999999999999999764210
Q ss_pred -----------hhhHh---hhhcccccCC------CCCCCCCCC-CC-----CCCCCC----------------CCCCcc
Q 006345 513 -----------LLDYF---RRFQSASQKN------GRHGFFGSG-YA-----RSEADC----------------DDPFGE 550 (649)
Q Consensus 513 -----------~~~~f---~~f~~~~~~~------g~~gffg~g-fg-----~~~g~d----------------E~~f~i 550 (649)
..++| +.|+++.... ++.+.|+++ .. +.++.+ +..+.+
T Consensus 81 ~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 160 (397)
T PRK14281 81 GGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence 01222 2333221000 000011111 00 012222 123456
Q ss_pred ccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEeccccccc
Q 006345 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~ 630 (649)
.+.+.|+.|+|+| ...+ ....|+.|+ |.|++.+.. +.++|++++ +.+|+ .|.|.|..++++|..
T Consensus 161 ~r~~~C~~C~G~G-----~~~~-~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~ 224 (397)
T PRK14281 161 KKQVPCKECNGTG-----SKTG-ATETCPTCH-------GSGEVRQAS-KTMFGQFVN-ITACP-TCGGEGRVVKDRCPA 224 (397)
T ss_pred EeeecCCCCCCcc-----cCCC-CCccCCCCC-------CCcEEEEEE-ecccceEEE-EEecC-CCcceeeeeCCCCCC
Confidence 7789999999997 3333 578999999 999887644 566778765 66999 899999999999999
Q ss_pred CccceEEeee
Q 006345 631 CQVNLFLFSI 640 (649)
Q Consensus 631 CqG~G~~~~~ 640 (649)
|.|.|++...
T Consensus 225 C~G~g~v~~~ 234 (397)
T PRK14281 225 CYGEGIKQGE 234 (397)
T ss_pred CCCCccEecc
Confidence 9999998653
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.2e-29 Score=272.65 Aligned_cols=180 Identities=27% Similarity=0.441 Sum_probs=132.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hhh---
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--ELL--- 514 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e--e~~--- 514 (649)
.|||+||||++ +|+++|||+|||+||++||||+|++++.|+++|++|++||++|+||.||+.||+++... +..
T Consensus 1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~ 78 (391)
T PRK14284 1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF 78 (391)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc
Confidence 48999999999 79999999999999999999999887889999999999999999999999999986431 000
Q ss_pred --hHh----------hhhccccc---CCCCCCCCCC-C--CC-------CCCCCC----------------CCCCccccc
Q 006345 515 --DYF----------RRFQSASQ---KNGRHGFFGS-G--YA-------RSEADC----------------DDPFGESRR 553 (649)
Q Consensus 515 --~~f----------~~f~~~~~---~~g~~gffg~-g--fg-------~~~g~d----------------E~~f~isr~ 553 (649)
..| ..+++... ..-+..+|++ + ++ +.++.+ +..+.+.+.
T Consensus 79 ~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~ 158 (391)
T PRK14284 79 GGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY 158 (391)
T ss_pred CCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence 001 00000000 0001123332 1 11 112222 123456788
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCcc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQV 633 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG 633 (649)
+.|+.|+|+| ...+.....|+.|+ |+|.+.... |++| ++.+|+ .|.|.|.+..++|..|.|
T Consensus 159 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 219 (391)
T PRK14284 159 KSCDACSGSG-----ANSSQGIKVCDRCK-------GSGQVVQSR-----GFFS-MASTCP-ECGGEGRVITDPCSVCRG 219 (391)
T ss_pred ccCCCCcccc-----cCCCCCCeecCccC-------CeeEEEEEe-----ceEE-EEEECC-CCCCCCcccCCcCCCCCC
Confidence 9999999998 56677789999999 999887642 5554 677999 899999999999999999
Q ss_pred ceEEeee
Q 006345 634 NLFLFSI 640 (649)
Q Consensus 634 ~G~~~~~ 640 (649)
.|++...
T Consensus 220 ~g~v~~~ 226 (391)
T PRK14284 220 QGRIKDK 226 (391)
T ss_pred cceecce
Confidence 9998543
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.9e-29 Score=271.14 Aligned_cols=180 Identities=29% Similarity=0.461 Sum_probs=131.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hhhhhh---
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD----ELRREE--- 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~----~~~~ee--- 512 (649)
.|||+||||++ +|+.+|||+|||+||++||||+++.++.|+++|++|++||+||+||.+|+.||+ ++...-
T Consensus 9 ~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 9 KDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 69999999999 799999999999999999999998778899999999999999999999999998 543110
Q ss_pred ------------hhhHhhhhcccccCC--------CCCCCCCCCC---CCCCCCC----------------CCCCccccc
Q 006345 513 ------------LLDYFRRFQSASQKN--------GRHGFFGSGY---ARSEADC----------------DDPFGESRR 553 (649)
Q Consensus 513 ------------~~~~f~~f~~~~~~~--------g~~gffg~gf---g~~~g~d----------------E~~f~isr~ 553 (649)
..++|..+.+..+.. .+.++|+++. .+.++.+ +..+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 001111110000000 0112233211 1112222 123456788
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCcc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQV 633 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG 633 (649)
+.|+.|+|+| .+.+....+|+.|+ |+|++.... |++| .+.+|+ .|.|.|.++.++|..|.|
T Consensus 167 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 227 (389)
T PRK14295 167 APCPACSGTG-----AKNGTTPRVCPTCS-------GTGQVSRNS-----GGFS-LSEPCP-DCKGRGLIADDPCLVCKG 227 (389)
T ss_pred ccCCCCcccc-----cCCCCCCcCCCCCC-------CEeEEEEEe-----cceE-EEEecC-CCcceeEEeccCCCCCCC
Confidence 9999999998 56667789999999 999887642 3333 567999 899999999999999999
Q ss_pred ceEEeee
Q 006345 634 NLFLFSI 640 (649)
Q Consensus 634 ~G~~~~~ 640 (649)
.|++...
T Consensus 228 ~g~~~~~ 234 (389)
T PRK14295 228 SGRAKSS 234 (389)
T ss_pred CceEeee
Confidence 9988654
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.5e-29 Score=268.09 Aligned_cols=174 Identities=30% Similarity=0.461 Sum_probs=133.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh-h---
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL-L--- 514 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~-~--- 514 (649)
..|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||++|+||.+|+.||+++...-. .
T Consensus 3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~ 80 (371)
T PRK10767 3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG 80 (371)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence 479999999999 7999999999999999999999987788999999999999999999999999997642100 0
Q ss_pred ----------hHhhhhcccccCCCCCCCCCCCC-----CCCCCCC----------------CCCCccccccccccccCcc
Q 006345 515 ----------DYFRRFQSASQKNGRHGFFGSGY-----ARSEADC----------------DDPFGESRRIACKKCNNFH 563 (649)
Q Consensus 515 ----------~~f~~f~~~~~~~g~~gffg~gf-----g~~~g~d----------------E~~f~isr~V~C~kC~GtG 563 (649)
+.|..++ ..+||++. .+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~f~~~f--------~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G 152 (371)
T PRK10767 81 GGFGGGGGFGDIFGDIF--------GDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG 152 (371)
T ss_pred CCCCCccccccchhhhh--------hhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence 0011111 11232211 1112222 1234567889999999997
Q ss_pred ceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 564 VWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 564 ~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
...+.....|+.|+ |.|++.... |++| .+.+|+ .|.|.|..+.++|..|+|.|++....
T Consensus 153 -----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 153 -----AKPGTSPKTCPTCH-------GAGQVRMQQ-----GFFT-VQQTCP-TCHGRGKIIKDPCKKCHGQGRVEKEK 211 (371)
T ss_pred -----cCCCCCCccCCCCC-------CeeEEEEee-----ceEE-EEEeCC-CCCCceeECCCCCCCCCCCceEeeee
Confidence 55666778999999 999887642 5554 677999 89999999999999999999986543
No 23
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=274.30 Aligned_cols=170 Identities=25% Similarity=0.373 Sum_probs=129.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e-------- 511 (649)
+|||+||||++ +||.+|||+|||+||++||||||+ + .++|++|++||+||+||.||+.||+++...
T Consensus 28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~ 101 (421)
T PTZ00037 28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101 (421)
T ss_pred hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence 79999999999 799999999999999999999985 2 489999999999999999999999986431
Q ss_pred hhhhHhhhhcccccCCCCCCCCCCCCCCCCCCC----------------CCCCccccccccccccCccceeeeccCcccc
Q 006345 512 ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA 575 (649)
Q Consensus 512 e~~~~f~~f~~~~~~~g~~gffg~gfg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T~ks~s~a 575 (649)
+..++|..|+++. +...++.++.+ +..+.+.+.+.|+.|+|+| . .....
T Consensus 102 d~~d~f~~~Fggg---------~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G-----~-~~~~~ 166 (421)
T PTZ00037 102 DASDLFDLIFGGG---------RKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHG-----G-PKDAF 166 (421)
T ss_pred chhhhHHHhhccc---------cccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCC-----C-CCCCC
Confidence 1123333333210 00011122322 2244567889999999997 3 33467
Q ss_pred ccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc--cccccCccceEEeee
Q 006345 576 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--TDWYICQVNLFLFSI 640 (649)
Q Consensus 576 rtC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk--t~Ca~CqG~G~~~~~ 640 (649)
.+|+.|+ |+|++....+ +++ ++++++.+|+ .|.|.|..+. ++|..|+|.|++...
T Consensus 167 ~~C~~C~-------G~G~~~~~~~-~g~-~~~q~~~~C~-~C~G~G~~i~~~~~C~~C~G~g~v~~~ 223 (421)
T PTZ00037 167 VDCKLCN-------GQGIRVQIRQ-MGS-MIHQTQSTCN-SCNGQGKIIPESKKCKNCSGKGVKKTR 223 (421)
T ss_pred ccCCCCC-------CCCeEEEEEe-ecc-eeeEEEEeCC-CCCCcceeccccccCCcCCCcceeeee
Confidence 8999999 9998766443 444 7788999999 8999998874 899999999998654
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.7e-29 Score=268.75 Aligned_cols=185 Identities=27% Similarity=0.381 Sum_probs=135.9
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-h---
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE-L--- 513 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee-~--- 513 (649)
..+|||++|||++ +|+.+|||+|||+||++||||+|+. +.|+++|++|++||++|+||.+|+.||+++...- .
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~ 79 (378)
T PRK14283 3 EKRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ 79 (378)
T ss_pred CcCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc
Confidence 3579999999999 8999999999999999999999974 7899999999999999999999999999864210 0
Q ss_pred hhH---------hhhhcccccCCCCCCC-CCCCC--CCCCCCC----------------CCCCccccccccccccCccce
Q 006345 514 LDY---------FRRFQSASQKNGRHGF-FGSGY--ARSEADC----------------DDPFGESRRIACKKCNNFHVW 565 (649)
Q Consensus 514 ~~~---------f~~f~~~~~~~g~~gf-fg~gf--g~~~g~d----------------E~~f~isr~V~C~kC~GtG~~ 565 (649)
... |..|.... ...+..+ |+++. ++.++.+ ...+.+.+.+.|+.|.|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G-- 156 (378)
T PRK14283 80 EDIFNNINFEDIFQGFGFGI-GNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR-- 156 (378)
T ss_pred cccccccCccccccccccch-hhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc--
Confidence 000 11110000 0000011 22211 1122222 1234567789999999997
Q ss_pred eeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 566 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 566 ~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
...+.....|+.|+ |.|++.+.. .+++|++++ +.+|+ .|.|.|..+.++|..|.|.|.+...+
T Consensus 157 ---~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 219 (378)
T PRK14283 157 ---AEPGSEVKTCPTCG-------GTGQVKQVR-NTILGQMMN-VTTCP-DCQGEGKIVEKPCSNCHGKGVVRETK 219 (378)
T ss_pred ---cCCCCCCccCCCcC-------CccEEEEEE-eccCceEEE-EEECC-CCCccceecCCCCCCCCCceeeccce
Confidence 55666788999999 999998754 466788764 56999 89999999999999999999986543
No 25
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.96 E-value=3.6e-29 Score=265.14 Aligned_cols=183 Identities=27% Similarity=0.419 Sum_probs=135.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh------
Q 006345 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL------ 514 (649)
Q Consensus 441 D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~~------ 514 (649)
|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.++......
T Consensus 1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 77 (354)
T TIGR02349 1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGG 77 (354)
T ss_pred ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCC
Confidence 7999999999 799999999999999999999997 5778999999999999999999999999976431100
Q ss_pred hHhhhhcc-ccc-C-CCCCCCCCCCCC--------CCCCCC----------------CCCCccccccccccccCccceee
Q 006345 515 DYFRRFQS-ASQ-K-NGRHGFFGSGYA--------RSEADC----------------DDPFGESRRIACKKCNNFHVWIE 567 (649)
Q Consensus 515 ~~f~~f~~-~~~-~-~g~~gffg~gfg--------~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~ 567 (649)
..|..+.. ... . .-+..+|+++.+ +.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G---- 153 (354)
T TIGR02349 78 GGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTG---- 153 (354)
T ss_pred CCcCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCC----
Confidence 00000000 000 0 001123332111 112222 1234567889999999998
Q ss_pred eccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 568 TKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 568 T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
...+.....|+.|+ |.|++... +.+++|++|+ +.+|+ .|.|.|..+.++|+.|+|.|++....
T Consensus 154 -~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 216 (354)
T TIGR02349 154 -AKPGTDPKTCPTCG-------GTGQVRRQ-QGTPFGFFQQ-QQTCP-TCGGEGKIIKEPCSTCKGKGRVKERK 216 (354)
T ss_pred -CCCCCCCccCCCCC-------CeeEEEEE-EeccCCceEE-EEecC-CCCCcceecCCCCCCCCCCcEecccc
Confidence 55566688999999 99988875 4678899886 67999 89999999999999999999987654
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=6e-29 Score=266.59 Aligned_cols=184 Identities=28% Similarity=0.481 Sum_probs=137.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e------- 511 (649)
..|||++|||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||++|+||.+|+.||+++...
T Consensus 4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 479999999999 79999999999999999999999888899999999999999999999999999976421
Q ss_pred --------hhhhHhhhh---cccccCCCCC--CCCCCCC---CCCCCCC----------------CCCCccccccccccc
Q 006345 512 --------ELLDYFRRF---QSASQKNGRH--GFFGSGY---ARSEADC----------------DDPFGESRRIACKKC 559 (649)
Q Consensus 512 --------e~~~~f~~f---~~~~~~~g~~--gffg~gf---g~~~g~d----------------E~~f~isr~V~C~kC 559 (649)
+..++|..| +++.. ++.. +.++.+. .+.++.+ +..+.+.+.+.|+.|
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~-gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHG-GGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccc-cCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 011222222 11100 0000 0011000 0112222 123456778999999
Q ss_pred cCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEee
Q 006345 560 NNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFS 639 (649)
Q Consensus 560 ~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~ 639 (649)
+|+| ...+.....|+.|+ |.|++.... .+++|+++. +.+|+ .|.|.|+.+..+|..|.|.|++..
T Consensus 161 ~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~ 225 (386)
T PRK14289 161 HGTG-----AEGNNGSETCPTCK-------GSGSVTRVQ-NTILGTMQT-QSTCP-TCNGEGKIIKKKCKKCGGEGIVYG 225 (386)
T ss_pred CCCC-----CCCCCCCCcCCCCc-------CeEEEEEEE-ecccceEEE-EEecC-CCCccccccCcCCCCCCCCcEEee
Confidence 9998 56677789999999 999888754 567788764 88999 899999999999999999999865
Q ss_pred e
Q 006345 640 I 640 (649)
Q Consensus 640 ~ 640 (649)
.
T Consensus 226 ~ 226 (386)
T PRK14289 226 E 226 (386)
T ss_pred e
Confidence 3
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=7.3e-29 Score=265.85 Aligned_cols=175 Identities=26% Similarity=0.423 Sum_probs=129.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e-------- 511 (649)
+|||+||||++ +|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 79 (382)
T PRK14291 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ 79 (382)
T ss_pred CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcc
Confidence 69999999999 7999999999999999999999975 789999999999999999999999999976421
Q ss_pred ------------hhhhHhhhhcccccCCCCCCCCCCC-----C-----CCCCCCC----------------CCCCccccc
Q 006345 512 ------------ELLDYFRRFQSASQKNGRHGFFGSG-----Y-----ARSEADC----------------DDPFGESRR 553 (649)
Q Consensus 512 ------------e~~~~f~~f~~~~~~~g~~gffg~g-----f-----g~~~g~d----------------E~~f~isr~ 553 (649)
++.++|..|++.+ ++.++|++. . .+.++.+ ...+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~d~f~~~f~~f---g~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~ 156 (382)
T PRK14291 80 QGQEGFSDFGGGNIEDILEDVFDIF---GFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRY 156 (382)
T ss_pred ccccccccccCCCHHHHHHHHHHhc---cccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeee
Confidence 0012222222111 001112210 0 0112222 123456778
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCcc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQV 633 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG 633 (649)
+.|+.|+|+| ...+.....|+.|+ |.|++... .|+ ++.+++|+ .|.|.|+ +.++|..|+|
T Consensus 157 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~-~~~~~~C~-~C~G~G~-~~~~C~~C~G 216 (382)
T PRK14291 157 VPCEACGGTG-----YDPGSGEKVCPTCG-------GSGEIYQR-----GGF-FRISQTCP-TCGGEGV-LREPCSKCNG 216 (382)
T ss_pred ccCCCCcccc-----CCCCCCCccCCCCC-------CceEEEEe-----cce-EEEEecCC-CCCCceE-EccCCCCCCC
Confidence 9999999998 56667788999999 99988764 133 45678999 8999995 6899999999
Q ss_pred ceEEeee
Q 006345 634 NLFLFSI 640 (649)
Q Consensus 634 ~G~~~~~ 640 (649)
.|++...
T Consensus 217 ~g~v~~~ 223 (382)
T PRK14291 217 RGLVIKK 223 (382)
T ss_pred CceEEee
Confidence 9998653
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2e-28 Score=261.62 Aligned_cols=172 Identities=26% Similarity=0.388 Sum_probs=131.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL------ 513 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee~------ 513 (649)
+|||+||||++ +||.+|||+|||++|++||||+++ ++.|+++|++|++||++|+||.+|+.||+++...-.
T Consensus 3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 79 (372)
T PRK14300 3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRG 79 (372)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccC
Confidence 69999999999 799999999999999999999997 467899999999999999999999999998642100
Q ss_pred ------------hhHhhhhcccccCCCCCCCCCCC--CCC----CCCCC----------------CCCCccccccccccc
Q 006345 514 ------------LDYFRRFQSASQKNGRHGFFGSG--YAR----SEADC----------------DDPFGESRRIACKKC 559 (649)
Q Consensus 514 ------------~~~f~~f~~~~~~~g~~gffg~g--fg~----~~g~d----------------E~~f~isr~V~C~kC 559 (649)
.++|..|++. +|+++ ..+ .++.+ +..+.+.+.+.|+.|
T Consensus 80 ~~g~~~~~~~~~~~~f~~~f~~--------~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C 151 (372)
T PRK14300 80 GGGNHGGFHPDINDIFGDFFSD--------FMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTC 151 (372)
T ss_pred CCCCCCccccchhhhHHHHHHh--------hcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCC
Confidence 0111111111 11211 001 12221 123456778999999
Q ss_pred cCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEee
Q 006345 560 NNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFS 639 (649)
Q Consensus 560 ~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~ 639 (649)
+|+| ...+.....|+.|+ |+|.+... .|++| ++.+|+ .|.|.|..+.++|..|.|.|++..
T Consensus 152 ~G~g-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~ 212 (372)
T PRK14300 152 HGSG-----SEKGETVTTCDACS-------GVGATRMQ-----QGFFT-IEQACH-KCQGNGQIIKNPCKKCHGMGRYHK 212 (372)
T ss_pred CCcc-----cCCCCCCccCCCcc-------CeEEEEEe-----eceEE-EEEeCC-CCCccceEeCCCCCCCCCceEEEe
Confidence 9998 56677788999999 99988753 25665 677999 899999999999999999999865
Q ss_pred eh
Q 006345 640 IL 641 (649)
Q Consensus 640 ~~ 641 (649)
..
T Consensus 213 ~~ 214 (372)
T PRK14300 213 QR 214 (372)
T ss_pred eE
Confidence 43
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.6e-28 Score=260.15 Aligned_cols=180 Identities=26% Similarity=0.396 Sum_probs=132.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p-~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e------- 511 (649)
.|||+||||++ +|+.+|||+|||+||++||||+++.++ .|+++|++|++||++|+||.+|+.||.++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~ 80 (365)
T PRK14290 3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN 80 (365)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC
Confidence 69999999999 799999999999999999999998654 79999999999999999999999999976421
Q ss_pred ----------hhhhHhhhhcccccCCCCCCCCCC-CCCC---CCCCC----------------CCCCccccccccccccC
Q 006345 512 ----------ELLDYFRRFQSASQKNGRHGFFGS-GYAR---SEADC----------------DDPFGESRRIACKKCNN 561 (649)
Q Consensus 512 ----------e~~~~f~~f~~~~~~~g~~gffg~-gfg~---~~g~d----------------E~~f~isr~V~C~kC~G 561 (649)
+..++|..|+++.. +. .+|++ +..+ .++.+ +..+.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~~~--~~-~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 81 FNWDNFTHFSDINDIFNQIFGGNF--GS-DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccccchhHHHHHHhcCcc--cc-ccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 11233444433210 00 01111 0011 11222 11335677899999999
Q ss_pred ccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 562 tG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
+| ...+ ...+|+.|+ |.|++....+ +++ +.++.+.+|+ .|.|.|..+.++|..|+|.|++...
T Consensus 158 ~g-----~~~~-~~~~C~~C~-------G~G~~~~~~~-~g~-~~~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 220 (365)
T PRK14290 158 TG-----AKNG-KLITCPTCH-------GTGQQRIVRG-QGF-FRMVTVTTCR-TCGGRGRIPEEKCPRCNGTGTVVVN 220 (365)
T ss_pred cc-----CCCC-CCccCCCCC-------CcCEEEEEec-cCe-EEEEEEEeCC-CCCCceeEccCCCCCCCCceeEEEe
Confidence 97 3333 678999999 9998877542 222 3356778999 8999999999999999999998654
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.2e-28 Score=261.37 Aligned_cols=182 Identities=27% Similarity=0.396 Sum_probs=136.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e-------- 511 (649)
.|||+||||++ +|+.+|||+|||+|+++||||+++. +.|+++|++|++||++|+||.+|+.||.++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~ 79 (374)
T PRK14293 3 ADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFP 79 (374)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcC
Confidence 69999999999 7999999999999999999999974 779999999999999999999999999876421
Q ss_pred ------hhhhHhhhhcccccCCCCCCCCC-CCCCCCCCCC----------------CCCCccccccccccccCccceeee
Q 006345 512 ------ELLDYFRRFQSASQKNGRHGFFG-SGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (649)
Q Consensus 512 ------e~~~~f~~f~~~~~~~g~~gffg-~gfg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T 568 (649)
...++|..|+++.+..+..+ ++ ...++.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 ~~~~~~~~~d~f~~~fg~~~~~~~~~-~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G----- 153 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGFGGAGGQG-GRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG----- 153 (374)
T ss_pred CcccccchHHHHHHHhcccCCCCCCC-ccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC-----
Confidence 01134444443210000000 00 0001112221 1234567789999999997
Q ss_pred ccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 569 ~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
...+.....|+.|+ |.|++.... ..++|++|+ +.+|+ .|.|.|..+.++|..|.|.|++...
T Consensus 154 ~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 215 (374)
T PRK14293 154 AKPGTGPTTCSTCG-------GAGQVRRAT-RTPFGSFTQ-VSECP-TCNGTGQVIEDPCDACGGQGVKQVT 215 (374)
T ss_pred CCCCCCCeeCCCCC-------CcceEEEEE-ecCcceEEE-EeeCC-CCCcceeEeccCCCCCCCCcccccc
Confidence 56666788999999 999887754 467788875 58999 8999999999999999999997654
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.3e-27 Score=255.03 Aligned_cols=179 Identities=26% Similarity=0.449 Sum_probs=133.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e-------- 511 (649)
.|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||+++...
T Consensus 2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~ 78 (371)
T PRK14292 2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGD 78 (371)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCc
Confidence 59999999999 799999999999999999999997 4789999999999999999999999999976421
Q ss_pred -------hhhhHhhhhcccccCCCCCCCCCCCCCCCCCCC----------------CCCCccccccccccccCccceeee
Q 006345 512 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (649)
Q Consensus 512 -------e~~~~f~~f~~~~~~~g~~gffg~gfg~~~g~d----------------E~~f~isr~V~C~kC~GtG~~~~T 568 (649)
++.++|..|+++... .+..+ ..++.++.+ ...+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~---~~~~~-~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G----- 149 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGF---GGGRG-RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR----- 149 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCc---CCCCC-cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc-----
Confidence 011334433321100 00000 011112222 1234567789999999997
Q ss_pred ccCcc-ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeee
Q 006345 569 KKSKA-SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 569 ~ks~s-~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
..... ...+|+.|+ |+|.+....+ ..+|++|+ +.+|+ .|.|.|.....+|..|.|.|++...
T Consensus 150 ~~~~~~~~~~C~~C~-------G~G~~~~~~~-~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (371)
T PRK14292 150 TEPGGKPPKTCPTCR-------GAGAVRAQAR-TIFGVVET-QQPCP-TCRGEGQIITDPCTVCRGRGRTLKA 212 (371)
T ss_pred cCCCCCCCccCCCCC-------CccEEEEEEe-ccCceEEE-eeecC-CCcccceecCCCCCCCCCceEEeec
Confidence 33333 478899999 9998887554 45688765 67999 8999999999999999999988653
No 32
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-23 Score=218.12 Aligned_cols=73 Identities=42% Similarity=0.604 Sum_probs=69.2
Q ss_pred HHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 435 ril~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
-++..+|||+||||++ +|+..|||+||||||++||||||++||.|.+.|++|+.||||||||++|+.||.++.
T Consensus 11 ~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 4456689999999999 899999999999999999999999999999999999999999999999999999983
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.6e-23 Score=214.33 Aligned_cols=179 Identities=25% Similarity=0.398 Sum_probs=130.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh------hh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------EL 513 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e------e~ 513 (649)
.|||+||||++ +|+..|||+||++||++||||.|.. ++|.++|++|.+|||+|+|++||+.||..+... ++
T Consensus 43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~ 119 (288)
T KOG0715|consen 43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP 119 (288)
T ss_pred cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence 49999999999 8999999999999999999999986 699999999999999999999999999987643 12
Q ss_pred hhHhhhhccc-ccCC--CCCCCCC--CCCCC-CCCCCCCCCccccccccccccCccceeeeccCccccccCccccccccc
Q 006345 514 LDYFRRFQSA-SQKN--GRHGFFG--SGYAR-SEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 587 (649)
Q Consensus 514 ~~~f~~f~~~-~~~~--g~~gffg--~gfg~-~~g~dE~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~A 587 (649)
.+.|..+++. ..+. +....+- ..|.. .++. ...+.++....|..|.|.+ ...+.+...|..|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~-~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~----- 188 (288)
T KOG0715|consen 120 FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGS-KKRISFNVLSDCETCFGSG-----AEEGAKRESCKTCS----- 188 (288)
T ss_pred cchHHHhhcccccccccCcccccccccCHHHHhhcc-ccceEEEeecccccccCcC-----cccccccccchhhh-----
Confidence 3444444333 1000 0000000 00000 0111 2345566778999999997 66778888999999
Q ss_pred cCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 588 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 588 kdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
|.|.+.... ..++.+ . +|. .|.+.+.+..+.|..|.|.|.+...+
T Consensus 189 --~~~~~~~~~-~~~f~~--~---~~~-~c~~~~~~~~~~c~~~~g~~~v~~~k 233 (288)
T KOG0715|consen 189 --GRGLVSNPK-EDPFIL--Y---TCS-YCLGRGLVLRDNCQACSGAGQVRRAK 233 (288)
T ss_pred --Ccccccccc-cCCcce--e---ecc-cccccceeccchHHHhhcchhhhhhe
Confidence 999665533 223322 1 899 69999999999999999999776544
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-17 Score=172.19 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=67.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
..|||+|||+++ +++..|||||||+.|++|||||||+||.|.+.|+.|.+||+||+|+.+|..||+.++.
T Consensus 4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 579999999999 7999999999999999999999999999999999999999999999999999998764
No 35
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4.9e-17 Score=169.12 Aligned_cols=68 Identities=37% Similarity=0.541 Sum_probs=64.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..|||+||||++ +||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||+++.
T Consensus 3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 479999999999 799999999999999999999997 57899999999999999999999999999764
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.1e-17 Score=166.30 Aligned_cols=68 Identities=40% Similarity=0.637 Sum_probs=65.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|+|+|||+++ +|+.++|||+||+|+++||||+++.+|++.++|++|++||++|+||.+|..||+++.
T Consensus 31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 68999999999 899999999999999999999999889999999999999999999999999999854
No 37
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.65 E-value=1.6e-16 Score=128.96 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=59.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006345 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD 505 (649)
Q Consensus 441 D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p-~A~e~Fk~I~~AYeVLSDp~kR~~YD 505 (649)
|||+||||++ +++.++||++|+++++++|||+++.++ .+.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999 799999999999999999999987754 68999999999999999999999998
No 38
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.4e-16 Score=169.11 Aligned_cols=68 Identities=41% Similarity=0.615 Sum_probs=63.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
+.||+||||.+ +++..+||++||+|||+|||||||.. .+|.+.|+.|+.||+|||||..|+.||.+..
T Consensus 8 ~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 8 RCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 68999999999 79999999999999999999998754 6799999999999999999999999998743
No 39
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=99.60 E-value=2.4e-16 Score=139.51 Aligned_cols=77 Identities=40% Similarity=0.819 Sum_probs=70.3
Q ss_pred ccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEeccccccc
Q 006345 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~ 630 (649)
.+++.|++|++.|+|++|.++...+|+|+.|+++||||||++|+|.+.. |++- ++|+|.+++|||+|+|++
T Consensus 3 ~n~i~C~~C~~~H~r~~t~r~~~~AR~C~~C~~~H~Ak~gDiWaE~~~~----G~~~-----~yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 3 SNTIRCDKCGGKHKRIETDRPPSAARYCQDCKIRHPAKEGDIWAESSSL----GFLW-----TYYACMDGKVYDITEWAT 73 (94)
T ss_pred cceeechhhCCeeeeEEecCchhhhHhHHHhhhhcccccCCeEEEeccc----ceEE-----EEEEEcCceEEehhhhhh
Confidence 5789999999999999999999999999999999999999999998642 4442 788999999999999999
Q ss_pred CccceE
Q 006345 631 CQVNLF 636 (649)
Q Consensus 631 CqG~G~ 636 (649)
|||+..
T Consensus 74 Cq~~~~ 79 (94)
T PF14901_consen 74 CQGMHL 79 (94)
T ss_pred cccccc
Confidence 999986
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.59 E-value=1.1e-15 Score=160.07 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=62.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||++|||++ +++.+|||+|||+||++||||+++. +.|.++|++|++||++|+||.+|+.||.++
T Consensus 4 ~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 69999999999 7999999999999999999999864 689999999999999999999999999875
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-15 Score=163.83 Aligned_cols=68 Identities=37% Similarity=0.589 Sum_probs=62.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~---p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||.+|+|++ +||.+|||+|||++++.|||||..+. ..|++.|++|++|||||+||++|+.||.++.
T Consensus 9 ~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 9 IELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred hhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 58999999999 79999999999999999999998632 4588999999999999999999999998764
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.55 E-value=3.7e-15 Score=172.46 Aligned_cols=70 Identities=31% Similarity=0.385 Sum_probs=65.0
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
..++||+||||++ +|+..+||+|||+||++|||||+++ +.|.++|++|++||+||+||.+|+.||+++..
T Consensus 571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 3479999999999 8999999999999999999999986 47889999999999999999999999998754
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.3e-14 Score=115.69 Aligned_cols=59 Identities=49% Similarity=0.756 Sum_probs=54.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHHhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSFK 500 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~-~p~A~e~Fk~I~~AYeVLSDp~k 500 (649)
.|||+||||++ +++.++||++|+++++++|||++++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999 7999999999999999999999975 57899999999999999999853
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=137.88 Aligned_cols=67 Identities=42% Similarity=0.681 Sum_probs=63.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~-A~e~Fk~I~~AYeVLSDp~kR~~YD~~ 507 (649)
..+||+||||++ +++.+|||++||+++++||||+++.++. |.+.|+.|++||++|+|+.+|..||..
T Consensus 5 ~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 379999999998 8999999999999999999999998775 999999999999999999999999985
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-14 Score=146.73 Aligned_cols=70 Identities=39% Similarity=0.625 Sum_probs=63.6
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~--~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..+|+|+||||.+ +|+..+||+||++|++++|||+++ ...+|.++|+.|+.||+||+|.++|+.||+.+.
T Consensus 12 ~~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 3469999999999 799999999999999999999994 236689999999999999999999999998754
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.49 E-value=4.4e-14 Score=110.67 Aligned_cols=55 Identities=44% Similarity=0.680 Sum_probs=51.5
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q 006345 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (649)
Q Consensus 441 D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSD 497 (649)
|||++|||++ +++.++||++||++++++|||++++.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999998 799999999999999999999997546789999999999999986
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=7.3e-14 Score=147.71 Aligned_cols=69 Identities=35% Similarity=0.479 Sum_probs=62.9
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006345 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (649)
Q Consensus 437 l~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~---p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~ 507 (649)
...+|||+||||.+ +|+..||.|||||+|++||||..... ..|+++|..|..|-|||+||++|+.||..
T Consensus 391 s~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 391 SGKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred hccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 34579999999999 89999999999999999999998653 34889999999999999999999999985
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.44 E-value=1.3e-13 Score=156.97 Aligned_cols=67 Identities=34% Similarity=0.540 Sum_probs=63.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +|+.++||++||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.++.
T Consensus 2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 69999999999 7999999999999999999999975 7889999999999999999999999999764
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-13 Score=137.54 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=65.5
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006345 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (649)
Q Consensus 437 l~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~e 511 (649)
.+..|+||||||++ .+++.|||||||+|++++||||++.....++.|..|.+||+.|+|+..|+.|..++...
T Consensus 96 ~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 96 RQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 34479999999999 79999999999999999999999754566788999999999999999999999987653
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=6.6e-13 Score=129.26 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=60.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||++|||++..+++..+||++||++++++|||+....+. |.+.|+.|++||++|+||.+|+.|+-.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 38999999999666899999999999999999999765422 5678999999999999999999999654
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.37 E-value=4.6e-13 Score=128.57 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=59.1
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 440 ~D~YeILGV~~~~~A--s~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
..+|+||||++ +| |.+|||+|||++++++||||++. .++|++|++||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 45799999999 78 99999999999999999999743 47999999999999999999999998654
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.6e-12 Score=126.21 Aligned_cols=69 Identities=32% Similarity=0.458 Sum_probs=60.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~---A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||++|||++..+++..+|+++||++++++|||++..... +.+.+..|++||++|+||.+|+.|+-.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 58999999999656899999999999999999999865322 3456889999999999999999998764
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.9e-12 Score=126.79 Aligned_cols=69 Identities=32% Similarity=0.452 Sum_probs=60.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHH-----HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A-----~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||++|||++..+++..+|+++||++++++|||+++..+.+ .+.+..|++||++|+||.+|..|+-.+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 699999999996668999999999999999999998755443 445689999999999999999999654
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.32 E-value=2.3e-12 Score=125.93 Aligned_cols=71 Identities=28% Similarity=0.363 Sum_probs=63.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..|||++|||++..+.+..+|+++||++++++|||++.+.+. +.+.|..|++||++|+||.+|+.|+-.+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 479999999999777899999999999999999999866433 56789999999999999999999997653
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.6e-12 Score=136.53 Aligned_cols=73 Identities=38% Similarity=0.626 Sum_probs=66.7
Q ss_pred HHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 435 ril~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
+.-+.+|||.|||+.+ +++.+|||++||++|+.+|||++.++ .+|+.+|+++.+||.+|+||.+|..||....
T Consensus 368 kkSkRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHhhhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 4445689999999999 89999999999999999999999887 7899999999999999999999999997643
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.9e-12 Score=124.57 Aligned_cols=69 Identities=43% Similarity=0.598 Sum_probs=61.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..|||+||+|++ +|+.+|||+|||++|+++|||+++.+ ..|.++|+++.+||++|+||.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 369999999998 68888999999999999999998764 2466689999999999999999999999875
No 57
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9e-12 Score=123.53 Aligned_cols=90 Identities=36% Similarity=0.503 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHhcCC------CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHH
Q 006345 415 PGVPSTSGDDSEMTSEDEVVRLLNCT------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKK 487 (649)
Q Consensus 415 ~~~~sts~~ds~~tseeev~ril~~~------D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~ 487 (649)
....++...|+.+++.++|+|++.+- ++|+||.|.| ..+.++||+.||+|++..|||||+.| +.|..+|..
T Consensus 22 ~evk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdi 99 (250)
T KOG1150|consen 22 QEVKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDI 99 (250)
T ss_pred HHHHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHH
Confidence 34456778899999999999999963 8899999999 78999999999999999999999988 889999999
Q ss_pred HHHHHHHhhhhhhhhhhhh
Q 006345 488 LQNAYEVLFDSFKRKAYDD 506 (649)
Q Consensus 488 I~~AYeVLSDp~kR~~YD~ 506 (649)
+.+||..|-|+..|..-+.
T Consensus 100 vkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 100 VKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred HHHHHHHHhCHHHHHHHHH
Confidence 9999999999987765554
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.7e-11 Score=123.83 Aligned_cols=70 Identities=33% Similarity=0.558 Sum_probs=64.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee 512 (649)
.|.|++|||.+ +++..||+||||+||+++|||++++ +++.+.|..|..||++|.|.+.|..||-.+..++
T Consensus 33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 69999999999 6899999999999999999999985 7788999999999999999999999997765543
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.04 E-value=2.5e-10 Score=118.30 Aligned_cols=56 Identities=39% Similarity=0.528 Sum_probs=50.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----HHHHHHHHHHHHHHHHhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFD 497 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~---~----p~A~e~Fk~I~~AYeVLSD 497 (649)
.++|++|||++ ++|.+|||++||+|+++||||++.+ + +.|+++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999 7999999999999999999999642 1 4588999999999999985
No 60
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.00 E-value=4.1e-10 Score=93.67 Aligned_cols=65 Identities=23% Similarity=0.458 Sum_probs=50.3
Q ss_pred cccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec-ccccccCccc
Q 006345 556 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-ATDWYICQVN 634 (649)
Q Consensus 556 C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d-kt~Ca~CqG~ 634 (649)
|+.|+|+| .+++..+.+|+.|+ |+|++....+ . ++++++++++|+ .|.|+|.++ .++|+.|+|.
T Consensus 1 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~-~~~~~~~~~~C~-~C~G~G~~i~~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTG-----AKPGKKPKTCPQCN-------GSGQVTRRQQ-T-PGGVFQMQQTCP-KCGGTGKIIEKDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTS-----B-STTT-EE-TTSS-------SSSEEEEEEE-S-SSTTEEEEEE-T-TTSSSSEE-TSSB-SSSTTS
T ss_pred CCcCCCcc-----cCCCCCCcCCcCCC-------CeeEEEEEEe-C-CCeEEEEEEECC-CCcceeeEECCCCCCCCCCc
Confidence 89999998 66788899999999 9999998765 3 345567889999 799999998 9999999998
Q ss_pred e
Q 006345 635 L 635 (649)
Q Consensus 635 G 635 (649)
|
T Consensus 66 g 66 (66)
T PF00684_consen 66 G 66 (66)
T ss_dssp S
T ss_pred C
Confidence 6
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.00 E-value=3.3e-10 Score=104.51 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=45.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLS 496 (649)
.++|+||||++ +++.+|||++||+|++++|||+.. + .+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 57899999999 799999999999999999999963 3 368899999999995
No 62
>PHA02624 large T antigen; Provisional
Probab=98.94 E-value=5.4e-10 Score=126.47 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=54.9
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 504 (649)
Q Consensus 440 ~D~YeILGV~~~~~A--s~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~Y 504 (649)
.++|++|||++ +| +.++||+|||++|++|||||+. + .++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 57899999999 78 9999999999999999999973 2 48999999999999999999998
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.90 E-value=2.3e-09 Score=104.96 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||++||+|+..+.+..++++.||++.+++|||+....+ .|.+.-..||+||.+|+||-+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 6899999999977799999999999999999999986542 255678899999999999999999976543
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.78 E-value=3.7e-09 Score=115.03 Aligned_cols=70 Identities=29% Similarity=0.437 Sum_probs=62.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---c--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N--EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~---~--p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
-.|+|||||++. +++..+||++||+|+.|+||||.+. + .+-+|.+++|++||+.|+|+..|+.|-.++..
T Consensus 97 ~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 97 GFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred CCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 379999999999 7899999999999999999999864 1 45679999999999999999999999988654
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.77 E-value=9.2e-09 Score=99.15 Aligned_cols=57 Identities=30% Similarity=0.385 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc-----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 453 NVDVSILKREYRKKAMLVHPDKNMGN-----EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 453 ~As~~EIKKAYRKLAlk~HPDKn~~~-----p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
+.+..+|+++||++++++|||+.+.. ..+.+.|..|++||++|+||.+|+.|+-.+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46789999999999999999996543 2267899999999999999999999997654
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3e-08 Score=102.54 Aligned_cols=69 Identities=38% Similarity=0.472 Sum_probs=60.2
Q ss_pred CCCcccccCcccCC-CCCHHHHHHHHHHHHHHhCCCCC--CCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKN--MGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (649)
Q Consensus 439 ~~D~YeILGV~~~~-~As~~EIKKAYRKLAlk~HPDKn--~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~ 507 (649)
..|+|.+|||+.+. .+++.+|.++.++...+||||+. .++-...+.|+.|+.||+||+|+.+|..||.-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 36999999999642 37889999999999999999997 23355679999999999999999999999975
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.3e-06 Score=100.52 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=47.5
Q ss_pred CCcccccCcccCC--CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhh
Q 006345 440 TDHYSALGLSRFE--NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (649)
Q Consensus 440 ~D~YeILGV~~~~--~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp 498 (649)
.+-|+||.++-.. .-+.+.||++|+|||.+|||||| |+..++|.++++|||.|+..
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHHH
Confidence 4789999998531 12458899999999999999999 57889999999999999844
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.91 E-value=1.6e-05 Score=73.34 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=49.4
Q ss_pred ccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEeccccccc
Q 006345 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~ 630 (649)
...+.|..|+|+| . +.|+.|+ |+|++.... . + .++.+.+|+ .|.|+|.. .|..
T Consensus 39 ~~~v~C~~C~GsG-----~------~~C~~C~-------G~G~v~~~~---~-g-~~q~~~~C~-~C~G~Gk~---~C~~ 91 (111)
T PLN03165 39 ENTQPCFPCSGTG-----A------QVCRFCV-------GSGNVTVEL---G-G-GEKEVSKCI-NCDGAGSL---TCTT 91 (111)
T ss_pred ccCCCCCCCCCCC-----C------cCCCCCc-------CcCeEEEEe---C-C-cEEEEEECC-CCCCccee---eCCC
Confidence 4567999999997 2 3799999 999987542 1 2 256778999 79999974 4999
Q ss_pred CccceEEeee
Q 006345 631 CQVNLFLFSI 640 (649)
Q Consensus 631 CqG~G~~~~~ 640 (649)
|+|.|++-.-
T Consensus 92 C~G~G~~~~~ 101 (111)
T PLN03165 92 CQGSGIQPRY 101 (111)
T ss_pred CCCCEEEeee
Confidence 9999997643
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=9.4e-05 Score=75.78 Aligned_cols=56 Identities=23% Similarity=0.467 Sum_probs=49.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH-Hhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFDS 498 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYe-VLSDp 498 (649)
..+|.||||.. .|+.++++.+|.+|++++|||.... ....+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHHH
Confidence 47899999999 7899999999999999999999853 556789999999998 88754
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00036 Score=67.81 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=59.3
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC----c-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG----N-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 437 l~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~----~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
....+||.++|.......++.-++.-|.-..+++|||+... + ..|.+...++++||.+|.||-+|+.|=-.+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34578999999887656777788889999999999999421 1 358889999999999999999999997543
No 71
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00093 Score=61.36 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=42.8
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhh
Q 006345 443 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 499 (649)
Q Consensus 443 YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~ 499 (649)
-.||||.+ +++.+.||+|+|+..+..|||+..+ |- .-.+|++|+++|....
T Consensus 59 ~lIL~v~~--s~~k~KikeaHrriM~~NHPD~GGS-PY---lAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 59 ALILGVTP--SLDKDKIKEAHRRIMLANHPDRGGS-PY---LASKINEAKDLLEGTS 109 (112)
T ss_pred HHHhCCCc--cccHHHHHHHHHHHHHcCCCcCCCC-HH---HHHHHHHHHHHHhccc
Confidence 46899998 7999999999999999999999965 53 2247999999997543
No 72
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.0012 Score=74.93 Aligned_cols=72 Identities=17% Similarity=0.396 Sum_probs=50.7
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeec-------CCccceeEEEeecccccccCceEec-c
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSE-------PLFFGIFQKVDVPCAYVCANSRIYN-A 625 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q-------~~~~G~~qq~~~pC~y~C~Gsgi~d-k 625 (649)
..|+.|+|+| .-......|+.|+ |+|++..... .-..-++.....||+ .|.|.|.+. -
T Consensus 3 ~~C~~C~g~G------~i~v~~e~c~vc~-------gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~-~c~gkG~V~v~ 68 (715)
T COG1107 3 KKCPECGGKG------KIVVGEEECPVCH-------GTGFSDDFDPKGVANLSRETVDLFASFEIPCP-KCRGKGTVTVY 68 (715)
T ss_pred ccccccCCCc------eEeeeeeeccccc-------ccccccccChhhhhhhhhccccccccCCCCCC-eeccceeEEEE
Confidence 4799999987 2233456799999 9998743221 011223445577999 799987776 6
Q ss_pred cccccCccceEEee
Q 006345 626 TDWYICQVNLFLFS 639 (649)
Q Consensus 626 t~Ca~CqG~G~~~~ 639 (649)
..|+.|.|.|.+..
T Consensus 69 ~~c~~c~G~gkv~~ 82 (715)
T COG1107 69 DTCPECGGTGKVLT 82 (715)
T ss_pred eecccCCCceeEEe
Confidence 89999999998764
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0052 Score=60.23 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=52.9
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006345 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (649)
Q Consensus 441 D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~~AYeVLSDp~kR~~YD~~ 507 (649)
+++..+|.++....+.+.++..|+.+.+.+|||+....+. +.+.+..++.||.+|.||-+|..|=--
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4556666666434566789999999999999999865432 446899999999999999999998643
No 74
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.35 E-value=0.015 Score=65.21 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc---H----HHHHHHHHHHHHHHHh
Q 006345 454 VDVSILKREYRKKAMLVHPDKNMGN---E----KAVEAFKKLQNAYEVL 495 (649)
Q Consensus 454 As~~EIKKAYRKLAlk~HPDKn~~~---p----~A~e~Fk~I~~AYeVL 495 (649)
.+.++|||+|||..|.+||||.+.. . .|++.|..+++||+..
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999997653 2 2556677777777643
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.016 Score=56.91 Aligned_cols=53 Identities=36% Similarity=0.507 Sum_probs=46.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC--c-----HHHHHHHHHHHHHHHH
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG--N-----EKAVEAFKKLQNAYEV 494 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~--~-----p~A~e~Fk~I~~AYeV 494 (649)
.+.|.+|++++ ..+..+|+++||++....|||+-.. . ..+.+++++|++||+-
T Consensus 113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999 7899999999999999999999532 1 4578999999999975
No 76
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=94.94 E-value=0.0069 Score=64.10 Aligned_cols=83 Identities=27% Similarity=0.614 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHHHHh--------hhhhhHHHHHHhhhhhcccchhhHH
Q 006345 262 AMVGMFKFLMVLVVAALV-----AFFIGFALALVVVALSGTILLWLY--------GSFWTTFFVIFLGGLAFKFTHERLA 328 (649)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~-----~~~~g~~~~~~iv~~~~~~ilw~~--------~~fw~t~~~~i~gg~~f~~~h~r~~ 328 (649)
...|++.+.+++-++++. ++|+|...-++++-+ ++..|+| ++||+...+++ +|.|. .|
T Consensus 81 GlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lL--aL~vW~Ym~lLr~~GAs~WtiLaFcL----AF~La---iv 151 (381)
T PF05297_consen 81 GLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLL--ALGVWFYMWLLRELGASFWTILAFCL----AFLLA---IV 151 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHH---HH
Confidence 344444444444333332 356666555555443 4555666 57777655442 33332 44
Q ss_pred HHHHHHHH---hhhhhhhhhhhhHHHHh
Q 006345 329 LFITTMYS---IYCAWTYVGWLGLLLAL 353 (649)
Q Consensus 329 ~~i~~~y~---iy~~~~~~gwlg~~ls~ 353 (649)
+||.++|+ -|-+-+..-||=+||++
T Consensus 152 lLIIAv~L~qaWfT~L~dL~WL~LFlai 179 (381)
T PF05297_consen 152 LLIIAVLLHQAWFTILVDLYWLLLFLAI 179 (381)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544443 33344455565555543
No 77
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.035 Score=60.92 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=36.5
Q ss_pred cccccccccCccceeeec--cCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 552 RRIACKKCNNFHVWIETK--KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~--ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
....|++|+|+|...... ..-....+|+.|+ |+|.+. ..||+ .|.|.+...
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~-------G~G~~i--------------~~pC~-~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN-------GTGKII--------------KDPCG-KCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc-------cceeEC--------------CCCCC-CCCCCCeEe
Confidence 567899999998543333 1223567899999 999653 23799 899988755
No 78
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=93.68 E-value=0.035 Score=55.69 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=8.0
Q ss_pred cccccCccceEEeee
Q 006345 626 TDWYICQVNLFLFSI 640 (649)
Q Consensus 626 t~Ca~CqG~G~~~~~ 640 (649)
++|+.|+|.|++..+
T Consensus 116 ~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 116 RECDTCAGTGRFRPT 130 (186)
T ss_pred CCCCCCCCccEEeee
Confidence 345566666655544
No 79
>PRK14279 chaperone protein DnaJ; Provisional
Probab=92.75 E-value=0.055 Score=59.55 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=39.0
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec--------ccccccCccceEEeeehhhh
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--------ATDWYICQVNLFLFSILNQC 644 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d--------kt~Ca~CqG~G~~~~~~~~~ 644 (649)
.....|+.|+ |+|..... ...+|+ .|.|+|+.. ..+|..|+|.|.+ ++|.|
T Consensus 171 ~~~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--i~~~C 229 (392)
T PRK14279 171 TSPAPCTTCH-------GSGARPGT-----------SPKVCP-TCNGSGVISRNQGAFGFSEPCTDCRGTGSI--IEDPC 229 (392)
T ss_pred eccccCCCCc-------cccccCCC-----------CCCCCC-CCcceEEEEEEecceEEEEecCCCCceeEE--eCCcC
Confidence 3457899999 99964321 124799 899998753 4789999999997 67778
Q ss_pred h
Q 006345 645 L 645 (649)
Q Consensus 645 ~ 645 (649)
-
T Consensus 230 ~ 230 (392)
T PRK14279 230 E 230 (392)
T ss_pred C
Confidence 3
No 80
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=92.29 E-value=0.074 Score=61.07 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=46.1
Q ss_pred ccccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEeccc-c
Q 006345 549 GESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNAT-D 627 (649)
Q Consensus 549 ~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt-~ 627 (649)
..++.++|++|+|+|. -.-...|+.|. |+|.+. +|. .|..-..-... -
T Consensus 49 ~~~~~~pc~~c~gkG~-------V~v~~~c~~c~-------G~gkv~----------------~c~-~cG~~~~~~~~~l 97 (715)
T COG1107 49 FASFEIPCPKCRGKGT-------VTVYDTCPECG-------GTGKVL----------------TCD-ICGDIIVPWEEGL 97 (715)
T ss_pred cccCCCCCCeecccee-------EEEEeecccCC-------CceeEE----------------eec-cccceecCccccc
Confidence 3467889999999872 12346799999 998653 366 57643333222 4
Q ss_pred cccCccceE-Eeeehhhhh
Q 006345 628 WYICQVNLF-LFSILNQCL 645 (649)
Q Consensus 628 Ca~CqG~G~-~~~~~~~~~ 645 (649)
|+.|+-+.. ++..-|.|-
T Consensus 98 c~~c~~~~~~vy~l~~~c~ 116 (715)
T COG1107 98 CPECRRKPKIVYVLDNSCT 116 (715)
T ss_pred ChhHhhCCceeEEeccccc
Confidence 999999998 888888884
No 81
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=91.66 E-value=0.13 Score=43.02 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=30.8
Q ss_pred ccccccccccCccceeeecc----CccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCce
Q 006345 551 SRRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSR 621 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~k----s~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsg 621 (649)
.....|+.|+|+|....... .-.....|+.|+ |+|.+. . ..+|+ .|.|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~-------G~G~~i-~------------~~~C~-~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCG-------GTGKII-E------------KDPCK-TCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTS-------SSSEE--T------------SSB-S-SSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCc-------ceeeEE-C------------CCCCC-CCCCcC
Confidence 35568999999995443331 123457899999 999764 1 23799 799875
No 82
>PRK14285 chaperone protein DnaJ; Provisional
Probab=91.28 E-value=0.081 Score=57.72 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=37.7
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe--------cccccccCccceEEeeehhhhh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--------NATDWYICQVNLFLFSILNQCL 645 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~--------dkt~Ca~CqG~G~~~~~~~~~~ 645 (649)
....|..|+ |.|..... ...+|+ .|.|+|.. ...+|+.|+|.|.+ +.|.|-
T Consensus 145 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~--~~~~C~ 203 (365)
T PRK14285 145 RNMLCESCL-------GKKSEKGT-----------SPSICN-MCNGSGRVMQGGGFFRVTTTCPKCYGNGKI--ISNPCK 203 (365)
T ss_pred ecccCCCCC-------CcccCCCC-----------CCccCC-CccCceeEEecCceeEEeeecCCCCCcccc--cCCCCC
Confidence 456799999 99953211 123699 89998865 35789999999987 577774
No 83
>PRK14286 chaperone protein DnaJ; Provisional
Probab=91.28 E-value=0.099 Score=57.18 Aligned_cols=52 Identities=29% Similarity=0.465 Sum_probs=38.2
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe--------cccccccCccceEEeeehhhh
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--------NATDWYICQVNLFLFSILNQC 644 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~--------dkt~Ca~CqG~G~~~~~~~~~ 644 (649)
.....|..|+ |.|..... ...+|+ .|.|.|+. ...+|+.|+|.|.+ +.+.|
T Consensus 148 ~r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~--~~~~C 206 (372)
T PRK14286 148 PRLESCVDCN-------GSGASKGS-----------SPTTCP-DCGGSGQIRRTQGFFSVATTCPTCRGKGTV--ISNPC 206 (372)
T ss_pred eccccCCCCc-------CCCcCCCC-----------CCccCC-CCcCeEEEEEEeceEEEEEeCCCCCceeeE--ecccC
Confidence 3456799999 99964221 123699 89999865 35689999999988 56777
Q ss_pred h
Q 006345 645 L 645 (649)
Q Consensus 645 ~ 645 (649)
-
T Consensus 207 ~ 207 (372)
T PRK14286 207 K 207 (372)
T ss_pred C
Confidence 3
No 84
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=91.06 E-value=0.088 Score=58.70 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=39.1
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe------------cccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY------------NATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~------------dkt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|+ |.|... . ...+|+ .|.|+|+. ...+|+.|+|.|.+....
T Consensus 149 r~~~C~~C~-------G~G~~~--~----------~~~~C~-~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~ 208 (421)
T PTZ00037 149 KDVICANCE-------GHGGPK--D----------AFVDCK-LCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES 208 (421)
T ss_pred ccccccccC-------CCCCCC--C----------CCccCC-CCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc
Confidence 456799999 999421 1 124799 89999853 356899999999998877
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 209 ~~C~ 212 (421)
T PTZ00037 209 KKCK 212 (421)
T ss_pred ccCC
Confidence 8884
No 85
>PRK14278 chaperone protein DnaJ; Provisional
Probab=90.90 E-value=0.093 Score=57.50 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=37.1
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|+ |+|..... ...+|+ .|.|+|... ..+|..|+|.|.+ +.
T Consensus 138 ~~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 196 (378)
T PRK14278 138 TAVLCDRCH-------GKGTAGDS-----------KPVTCD-TCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV--IP 196 (378)
T ss_pred eeccCCCCc-------CccCCCCC-----------CceecC-CccCceEEEEEEeccceeEEEEEECCCCCcccee--eC
Confidence 456799999 99953211 124699 799988643 4689999999987 46
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 197 ~~C~ 200 (378)
T PRK14278 197 DPCH 200 (378)
T ss_pred CCCC
Confidence 7773
No 86
>PRK14295 chaperone protein DnaJ; Provisional
Probab=90.82 E-value=0.11 Score=57.04 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=38.0
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe--------cccccccCccceEEeeehhhhh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--------NATDWYICQVNLFLFSILNQCL 645 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~--------dkt~Ca~CqG~G~~~~~~~~~~ 645 (649)
....|..|. |+|..... ...+|+ .|.|+|+. ...+|+.|+|.|.+ +.|.|-
T Consensus 165 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--~~~~C~ 223 (389)
T PRK14295 165 SQAPCPACS-------GTGAKNGT-----------TPRVCP-TCSGTGQVSRNSGGFSLSEPCPDCKGRGLI--ADDPCL 223 (389)
T ss_pred ccccCCCCc-------ccccCCCC-----------CCcCCC-CCCCEeEEEEEecceEEEEecCCCcceeEE--eccCCC
Confidence 456799999 99964321 124799 89998764 35789999999987 567774
No 87
>PRK14294 chaperone protein DnaJ; Provisional
Probab=90.71 E-value=0.12 Score=56.40 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=38.2
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec--------ccccccCccceEEeeehhhhh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--------ATDWYICQVNLFLFSILNQCL 645 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d--------kt~Ca~CqG~G~~~~~~~~~~ 645 (649)
....|..|. |.|..... ...+|+ .|.|.|... ..+|+.|+|.|.+ +.|.|-
T Consensus 143 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~--~~~~C~ 201 (366)
T PRK14294 143 KLETCEECH-------GSGCEPGT-----------SPTTCP-QCGGSGQVTQSQGFFSIRTTCPRCRGMGKV--IVSPCK 201 (366)
T ss_pred ecccCCCCC-------CccccCCC-----------CcccCC-CcCCeEEEEEEeeeEEEEeeCCCCCCcCee--cCcCCC
Confidence 456799999 99964321 124799 899998654 5799999999987 567774
No 88
>PRK14280 chaperone protein DnaJ; Provisional
Probab=90.70 E-value=0.11 Score=56.97 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=37.0
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe------------cccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY------------NATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~------------dkt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|+ |.|..... ...+|+ .|.|+|.. ...+|..|+|.|.+ +.
T Consensus 142 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 200 (376)
T PRK14280 142 KEETCDTCH-------GSGAKPGT-----------SKETCS-HCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE--IK 200 (376)
T ss_pred eeccCCCCC-------CcccCCCC-----------CCccCC-CCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce--ec
Confidence 456799999 99953221 123699 89998764 24689999999987 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 201 ~~C~ 204 (376)
T PRK14280 201 EKCP 204 (376)
T ss_pred CCCC
Confidence 7673
No 89
>PRK14282 chaperone protein DnaJ; Provisional
Probab=90.68 E-value=0.1 Score=56.88 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=37.3
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |+|..... ...+|+ .|.|+|... ...|+.|+|.|.+ +.
T Consensus 151 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~~ 209 (369)
T PRK14282 151 RYETCPHCG-------GTGVEPGS-----------GYVTCP-KCHGTGRIREERRSFFGVFVSERTCERCGGTGKI--PG 209 (369)
T ss_pred ecccCCCCC-------ccCCCCCC-----------CCcCCC-CCCCcCEEEEEEEccCcceEEEEECCCCCCccee--CC
Confidence 456799999 99964211 124799 899987654 4589999999987 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 210 ~~C~ 213 (369)
T PRK14282 210 EYCH 213 (369)
T ss_pred CCCC
Confidence 7774
No 90
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=0.15 Score=55.03 Aligned_cols=10 Identities=10% Similarity=-0.081 Sum_probs=5.5
Q ss_pred ccccCccceE
Q 006345 627 DWYICQVNLF 636 (649)
Q Consensus 627 ~Ca~CqG~G~ 636 (649)
+|.+|.|.|-
T Consensus 258 ~C~TC~gtgs 267 (406)
T KOG2813|consen 258 PCTTCSGTGS 267 (406)
T ss_pred ccccccCccc
Confidence 4555655554
No 91
>PRK14296 chaperone protein DnaJ; Provisional
Probab=90.55 E-value=0.11 Score=56.73 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=36.7
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|..|+ |.|..... ...+|+ .|.|+|+.. ..+|+.|+|.|.+ +.
T Consensus 148 ~~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~--~~ 206 (372)
T PRK14296 148 LLTNCSKCF-------GSGAESNS-----------DIHICN-NCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI--IK 206 (372)
T ss_pred eeeccCCCC-------CCccCCCC-----------CCccCC-CCCCCceEEEEEeccceEEEEEecCCCcCCccee--ec
Confidence 456799999 99963221 123699 899998764 3589999999988 46
Q ss_pred hhh
Q 006345 642 NQC 644 (649)
Q Consensus 642 ~~~ 644 (649)
+.|
T Consensus 207 ~~C 209 (372)
T PRK14296 207 NKC 209 (372)
T ss_pred ccc
Confidence 666
No 92
>PRK14287 chaperone protein DnaJ; Provisional
Probab=90.53 E-value=0.1 Score=56.96 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=37.3
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |.|..... ...+|+ .|.|+|+.. ...|+.|+|.|.+ +.
T Consensus 137 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~~ 195 (371)
T PRK14287 137 REETCGTCH-------GSGAKPGT-----------KPETCS-HCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI--IK 195 (371)
T ss_pred eeccCCCCC-------CcccCCCC-----------CCcccC-CCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc--cc
Confidence 456799999 99964211 124699 899998654 3689999999987 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 196 ~~C~ 199 (371)
T PRK14287 196 QKCA 199 (371)
T ss_pred ccCC
Confidence 6663
No 93
>PRK14297 chaperone protein DnaJ; Provisional
Probab=90.31 E-value=0.13 Score=56.32 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=37.4
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe------------cccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY------------NATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~------------dkt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |.|...- . ...+|+ .|.|.|.. ...+|..|+|.|.+ +.
T Consensus 147 r~~~C~~C~-------G~G~~~~--------~---~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~~ 205 (380)
T PRK14297 147 RNENCETCN-------GTGAKPG--------T---SPKTCD-KCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV--IE 205 (380)
T ss_pred eeccCCCcc-------cccccCC--------C---cCccCC-CccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE--cC
Confidence 456799999 9996411 1 134799 89999865 35689999999987 46
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|.
T Consensus 206 ~~C~ 209 (380)
T PRK14297 206 DPCN 209 (380)
T ss_pred CCCC
Confidence 7774
No 94
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.22 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.8
Q ss_pred ecccccccCceEecccccccCccceEEe
Q 006345 611 VPCAYVCANSRIYNATDWYICQVNLFLF 638 (649)
Q Consensus 611 ~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~ 638 (649)
..|. .|+|.|+. +|.+|+|.|.+-
T Consensus 235 ~~C~-~C~G~G~~---~C~tC~grG~k~ 258 (406)
T KOG2813|consen 235 DLCY-MCHGRGIK---ECHTCKGRGKKP 258 (406)
T ss_pred chhh-hccCCCcc---cCCcccCCCCcc
Confidence 4577 79998864 699999999753
No 95
>PRK14277 chaperone protein DnaJ; Provisional
Probab=90.19 E-value=0.13 Score=56.48 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=37.3
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |.|..... ...+|+ .|.|.|+.. ..+|..|+|.|.+ +.
T Consensus 154 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~~ 212 (386)
T PRK14277 154 RFEKCDVCK-------GSGAKPGS-----------KPVTCP-VCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI--IT 212 (386)
T ss_pred eeccCCCCC-------CCCcCCCC-----------CCccCC-CCCCEEEEEEEEeccCceEEEEEECCCCCcceee--cc
Confidence 456799999 99964221 124799 899997653 3589999999988 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 213 ~~C~ 216 (386)
T PRK14277 213 DPCN 216 (386)
T ss_pred CCCC
Confidence 7773
No 96
>PRK14276 chaperone protein DnaJ; Provisional
Probab=90.17 E-value=0.11 Score=56.82 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=37.0
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|..|+ |.|..... ...+|+ .|.|+|... ..+|+.|+|.|.+ ++
T Consensus 145 ~~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~~ 203 (380)
T PRK14276 145 REATCHTCN-------GSGAKPGT-----------SPVTCG-KCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE--IK 203 (380)
T ss_pred ccccCCCCc-------CcccCCCC-----------CCccCC-CCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc--cc
Confidence 456799999 99953211 124799 899987653 4589999999988 46
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 204 ~~C~ 207 (380)
T PRK14276 204 EPCQ 207 (380)
T ss_pred CCCC
Confidence 7673
No 97
>PRK14290 chaperone protein DnaJ; Provisional
Probab=90.09 E-value=0.12 Score=56.21 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=37.1
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |.|.... ...+|+ .|.|.|+.. ...|+.|.|.|++ ++
T Consensus 148 r~~~C~~C~-------G~g~~~~------------~~~~C~-~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~--~~ 205 (365)
T PRK14290 148 RNAMCPDCS-------GTGAKNG------------KLITCP-TCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI--PE 205 (365)
T ss_pred ecccCCCCc-------cccCCCC------------CCccCC-CCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE--cc
Confidence 356799999 9995321 123699 899988643 4689999999987 67
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 206 ~~C~ 209 (365)
T PRK14290 206 EKCP 209 (365)
T ss_pred CCCC
Confidence 8884
No 98
>PRK10767 chaperone protein DnaJ; Provisional
Probab=89.95 E-value=0.15 Score=55.57 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=37.4
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec--------ccccccCccceEEeeehhhhh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--------ATDWYICQVNLFLFSILNQCL 645 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d--------kt~Ca~CqG~G~~~~~~~~~~ 645 (649)
....|+.|. |.|..... ...+|+ .|.|+|+.. ..+|..|+|.|.+ ++|.|-
T Consensus 141 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--~~~~C~ 199 (371)
T PRK10767 141 TLVTCDTCH-------GSGAKPGT-----------SPKTCP-TCHGAGQVRMQQGFFTVQQTCPTCHGRGKI--IKDPCK 199 (371)
T ss_pred ecccCCCCC-------CcccCCCC-----------CCccCC-CCCCeeEEEEeeceEEEEEeCCCCCCceeE--CCCCCC
Confidence 456799999 99954321 123699 899998653 5689999999987 467773
No 99
>PRK14300 chaperone protein DnaJ; Provisional
Probab=89.91 E-value=0.21 Score=54.55 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=31.1
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
...|+.|+|+|.....-..-.....|+.|+ |.|.+.. .+|+ .|.|.++..
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v~ 211 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQ-------GNGQIIK--------------NPCK-KCHGMGRYH 211 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCC-------ccceEeC--------------CCCC-CCCCceEEE
Confidence 457999999884322111112345788888 8886532 2588 788877754
No 100
>PRK14284 chaperone protein DnaJ; Provisional
Probab=89.43 E-value=0.14 Score=56.37 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=37.6
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec--------ccccccCccceEEeeehhhhh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN--------ATDWYICQVNLFLFSILNQCL 645 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d--------kt~Ca~CqG~G~~~~~~~~~~ 645 (649)
....|+.|+ |+|..... ...+|+ .|.|+|... ..+|+.|+|.|.+ +.|.|-
T Consensus 157 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~--~~~~C~ 215 (391)
T PRK14284 157 GYKSCDACS-------GSGANSSQ-----------GIKVCD-RCKGSGQVVQSRGFFSMASTCPECGGEGRV--ITDPCS 215 (391)
T ss_pred eeccCCCCc-------ccccCCCC-----------CCeecC-ccCCeeEEEEEeceEEEEEECCCCCCCCcc--cCCcCC
Confidence 456799999 99953211 124699 899998753 4699999999987 567773
No 101
>PRK14298 chaperone protein DnaJ; Provisional
Probab=89.25 E-value=0.14 Score=56.06 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=37.0
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|..|. |+|..... ...+|+ .|.|+|+.. ..+|..|+|.|.+ +.
T Consensus 140 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 198 (377)
T PRK14298 140 RAERCSTCS-------GTGAKPGT-----------SPKRCP-TCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV--IE 198 (377)
T ss_pred eeccCCCCC-------CCcccCCC-----------CCCcCC-CCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc--cC
Confidence 456799999 99953211 124699 899988654 4689999999986 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 199 ~~C~ 202 (377)
T PRK14298 199 SPCP 202 (377)
T ss_pred CCCC
Confidence 7773
No 102
>PRK14281 chaperone protein DnaJ; Provisional
Probab=89.04 E-value=0.17 Score=55.85 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=36.7
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|..|. |.|.... ...+|+ .|.|.|+.. ..+|..|+|.|.+ ++
T Consensus 162 r~~~C~~C~-------G~G~~~~------------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 219 (397)
T PRK14281 162 KQVPCKECN-------GTGSKTG------------ATETCP-TCHGSGEVRQASKTMFGQFVNITACPTCGGEGRV--VK 219 (397)
T ss_pred eeecCCCCC-------CcccCCC------------CCccCC-CCCCCcEEEEEEecccceEEEEEecCCCcceeee--eC
Confidence 456799999 9995321 123699 899987643 4579999999988 57
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 220 ~~C~ 223 (397)
T PRK14281 220 DRCP 223 (397)
T ss_pred CCCC
Confidence 7773
No 103
>PRK14301 chaperone protein DnaJ; Provisional
Probab=88.87 E-value=0.27 Score=53.88 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=30.7
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
...|+.|+|+|.....-..-.....|+.|+ |.|.+.. .+|+ .|.|.++..
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v~ 210 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCR-------GEGRVIT--------------HPCP-KCKGSGIVQ 210 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCC-------ceeeecC--------------CCCC-CCCCCceec
Confidence 357899998874321111112356788888 8886532 2588 788877665
No 104
>PRK14283 chaperone protein DnaJ; Provisional
Probab=88.50 E-value=0.19 Score=54.97 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=37.4
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|. |.|..... ...+|+ .|.|.|+.. ..+|..|+|.|.+ +.
T Consensus 145 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 203 (378)
T PRK14283 145 HTKKCPVCN-------GSRAEPGS-----------EVKTCP-TCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI--VE 203 (378)
T ss_pred eeccCCCCC-------ccccCCCC-----------CCccCC-CcCCccEEEEEEeccCceEEEEEECCCCCcccee--cC
Confidence 356799999 99953211 124799 899997753 4689999999988 56
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
|.|-
T Consensus 204 ~~C~ 207 (378)
T PRK14283 204 KPCS 207 (378)
T ss_pred CCCC
Confidence 7774
No 105
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=88.32 E-value=0.34 Score=52.43 Aligned_cols=50 Identities=18% Similarity=0.447 Sum_probs=32.4
Q ss_pred ccccccccCccceeeecc----CccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 553 RIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~k----s~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
...|+.|+|+|....... .-.....|+.|. |.|.+.. .+|+ .|.|.++..
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCG-------GEGKIIK--------------EPCS-TCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCC-------CcceecC--------------CCCC-CCCCCcEec
Confidence 567999999984332211 011235899999 9996532 2588 799888765
No 106
>PRK14288 chaperone protein DnaJ; Provisional
Probab=88.29 E-value=0.32 Score=53.17 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=30.9
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
...|+.|+|+|........-.....|+.|. |.|.+.. .+|+ .|.|.++..
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v~ 205 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQ-------GKGKIIK--------------TPCQ-ACKGKTYIL 205 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCC-------CCceEcc--------------ccCc-cCCCcceEE
Confidence 457999999884221111112345799998 8886532 2588 788876654
No 107
>PRK14293 chaperone protein DnaJ; Provisional
Probab=87.10 E-value=0.27 Score=53.74 Aligned_cols=51 Identities=18% Similarity=0.405 Sum_probs=37.2
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|..|. |+|..... ...+|+ .|.|+|+.. ..+|..|.|.|.+ ++
T Consensus 142 r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 200 (374)
T PRK14293 142 HLETCETCR-------GSGAKPGT-----------GPTTCS-TCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV--IE 200 (374)
T ss_pred ccccCCCCC-------CcCCCCCC-----------CCeeCC-CCCCcceEEEEEecCcceEEEEeeCCCCCcceeE--ec
Confidence 456799999 99953211 123699 799998643 3589999999987 67
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 201 ~~C~ 204 (374)
T PRK14293 201 DPCD 204 (374)
T ss_pred cCCC
Confidence 7773
No 108
>PRK14291 chaperone protein DnaJ; Provisional
Probab=86.78 E-value=0.5 Score=51.89 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=28.8
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
....|+.|+|+|........-.....|+.|+ |.|.+ . .+|. .|.|.++..
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~-------G~G~~-~--------------~~C~-~C~G~g~v~ 221 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCG-------GEGVL-R--------------EPCS-KCNGRGLVI 221 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCC-------CceEE-c--------------cCCC-CCCCCceEE
Confidence 3456888888874322211112345788888 88832 1 2577 688776543
No 109
>PRK14289 chaperone protein DnaJ; Provisional
Probab=86.77 E-value=0.26 Score=54.06 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=37.2
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeee
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSI 640 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~ 640 (649)
.....|..|. |.|..... ...+|+ .|.|+|... ..+|+.|.|.|++ +
T Consensus 152 ~r~~~C~~C~-------G~G~~~~~-----------~~~~C~-~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--~ 210 (386)
T PRK14289 152 KKYVPCSHCH-------GTGAEGNN-----------GSETCP-TCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI--I 210 (386)
T ss_pred EeecccCCCC-------CCCCCCCC-----------CCCcCC-CCcCeEEEEEEEecccceEEEEEecCCCCccccc--c
Confidence 3457899999 99954221 124699 899987654 4689999999987 4
Q ss_pred hhhhh
Q 006345 641 LNQCL 645 (649)
Q Consensus 641 ~~~~~ 645 (649)
.+.|-
T Consensus 211 ~~~C~ 215 (386)
T PRK14289 211 KKKCK 215 (386)
T ss_pred CcCCC
Confidence 56663
No 110
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=83.96 E-value=1.9 Score=41.13 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=37.1
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhh
Q 006345 443 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSF 499 (649)
Q Consensus 443 YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~ 499 (649)
..||+|++ ..+.++|.+.|.+|-...+|++..+ . -.-.+|..|.|.|..+-
T Consensus 61 ~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS-f---YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS-F---YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G----SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC-H---HHHHHHHHHHHHHHHHH
Confidence 57899998 7899999999999999999998743 2 34457888999887554
No 111
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.13 E-value=18 Score=36.85 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=21.5
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 238 IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAA 277 (649)
Q Consensus 238 ~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~ 277 (649)
+..+++||.-+++.++|..+.-+...++++-..+.+..++
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~ 121 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSG 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777776655544444443333333333
No 112
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=1.6 Score=46.75 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 454 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 454 As~~EIKKAYRKLAlk~HPDKn~~----~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
++..+|+.+|+..++..|||+... .-...+.|++|.+||++|.+..+|..+|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 567899999999999999999841 1245678999999999999977777777653
No 113
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=79.98 E-value=47 Score=37.72 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=39.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHh-----------h------------hhhhHHHHHHhhhhhccc-ch-hhHHHHHHH
Q 006345 279 VAFFIGFALALVVVALSGTILLWLY-----------G------------SFWTTFFVIFLGGLAFKF-TH-ERLALFITT 333 (649)
Q Consensus 279 ~~~~~g~~~~~~iv~~~~~~ilw~~-----------~------------~fw~t~~~~i~gg~~f~~-~h-~r~~~~i~~ 333 (649)
..+..+.|.|++++.+ +..+|-| . -+|...++.+.+-....+ .+ ++|+++...
T Consensus 136 ~~~l~~~~g~~~~~p~--~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~ 213 (495)
T PRK11644 136 NALLLTLTGGLTLAPT--CLLFWHYLAQNTWLPLGPSLVSQPVNWRGRHIVWYLLLFVLSIWLQLGLPDELSRFTPFCLA 213 (495)
T ss_pred HHHHHHHhchHHHHHH--HHHHHHHHhhcccccCCccccCCCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455677778877777 6677877 2 255544333222222111 12 344444322
Q ss_pred HHHhhhhhhhhhhhhHHHHhh
Q 006345 334 MYSIYCAWTYVGWLGLLLALN 354 (649)
Q Consensus 334 ~y~iy~~~~~~gwlg~~ls~N 354 (649)
+ .++.+..+.||-|.+++.=
T Consensus 214 ~-p~i~~a~~~g~~~a~l~~l 233 (495)
T PRK11644 214 I-PIIALAWRYGWQGALLATL 233 (495)
T ss_pred H-HHHHHHHhcCccchHHHHH
Confidence 2 3455666899987777543
No 114
>PRK14292 chaperone protein DnaJ; Provisional
Probab=79.75 E-value=0.67 Score=50.61 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=36.4
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec------------ccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN------------ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d------------kt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|+ |.|..... +...+|+ .|.|+|... ...|..|+|.|.. +.
T Consensus 138 r~~~C~~C~-------G~G~~~~~----------~~~~~C~-~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~~ 197 (371)
T PRK14292 138 RLTECEHCH-------GSRTEPGG----------KPPKTCP-TCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI--IT 197 (371)
T ss_pred eeecCCCCc-------ccccCCCC----------CCCccCC-CCCCccEEEEEEeccCceEEEeeecCCCccccee--cC
Confidence 456799999 99953210 1124698 899987654 3589999999987 45
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 198 ~~C~ 201 (371)
T PRK14292 198 DPCT 201 (371)
T ss_pred CCCC
Confidence 6664
No 115
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=78.59 E-value=13 Score=43.25 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHhh
Q 006345 247 TSFFSVIWCSILSVIAMVG---MFKF-LMVLVVAALVAFFIG 284 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~---~~~~-l~~~~~~~~~~~~~g 284 (649)
.++.+++|+.++.+++..+ +.|. ++++.+.++++.|.-
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~ 92 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFM 92 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666664 3333 444445555444433
No 116
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=77.63 E-value=2.4 Score=39.61 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=30.7
Q ss_pred ccccccCccceeeeccC-ccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 555 ACKKCNNFHVWIETKKS-KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 555 ~C~kC~GtG~~~~T~ks-~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
.|+.|+|+|.....-.. -.....|+.|+ |.|.+ +|. .|.|.+...
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~-------G~Gk~-----------------~C~-~C~G~G~~~ 99 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCD-------GAGSL-----------------TCT-TCQGSGIQP 99 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCC-------Cccee-----------------eCC-CCCCCEEEe
Confidence 89999999854322211 12356899999 88831 388 799988765
No 117
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=77.41 E-value=47 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhccc----chhhHHHHHHHHHHhhhhhhhhhh
Q 006345 286 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGW 346 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~----~h~r~~~~i~~~y~iy~~~~~~gw 346 (649)
...++|.++.--+++.+-|.+|+.....+++|...-+ .|-|=...++.-|++|++.....|
T Consensus 58 ~G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~ 122 (186)
T PF09605_consen 58 RGAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPY 122 (186)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhH
Confidence 3455666666666678888889999999988876433 222223446778888888766444
No 118
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.17 E-value=6.4 Score=41.55 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC
Q 006345 456 VSILKREYRKKAMLVHPDKN 475 (649)
Q Consensus 456 ~~EIKKAYRKLAlk~HPDKn 475 (649)
.+++.+++..+....++...
T Consensus 155 ~~~~~~~~~~~~~E~~g~~~ 174 (301)
T PF14362_consen 155 EKEIDRAQQEAQCEIFGTGG 174 (301)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 56788888888888888743
No 119
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=76.53 E-value=6.6 Score=34.90 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006345 268 KFLMVLVVAALVAFFIGFALALVVVALSG 296 (649)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~~~~~~iv~~~~ 296 (649)
.+++.+.++++++.++|.....+.+++++
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~ 39 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLL 39 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455566666777777766655555533
No 120
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=74.76 E-value=2 Score=43.34 Aligned_cols=32 Identities=22% Similarity=0.583 Sum_probs=23.8
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeEEEEe
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS 597 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~ 597 (649)
...|++|+|+|..+. ....|+.|+ |+|.+...
T Consensus 99 ~~~C~~C~G~G~~i~------~~~~C~~C~-------G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR------RQRECDTCA-------GTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEec------CCCCCCCCC-------CccEEeee
Confidence 567999999973221 125699999 99988764
No 121
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=74.10 E-value=1.5e+02 Score=32.82 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhhhhc--c-hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-
Q 006345 217 GHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVV- 292 (649)
Q Consensus 217 ~~~~~~~~~~~~~w~~~~~r--g-~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv- 292 (649)
+-++.+++.++..|+|-.+- + ...+...++.+.=.|+=...=|++++.+++.-++..++..+..+ |+|.++=.
T Consensus 12 ~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq---~sPR~l~~f 88 (371)
T PF10011_consen 12 YAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQ---FSPRLLRNF 88 (371)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHH
Confidence 44566777777788876543 1 44455555554444433334444444454444444444444444 34444311
Q ss_pred -------HHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhh
Q 006345 293 -------ALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (649)
Q Consensus 293 -------~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg 348 (649)
-.+|++| |.|-...++++..+-...-.-.++++.++.++++.|+...+-|..
T Consensus 89 ~~d~~~q~vLg~Fi----gtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~ 147 (371)
T PF10011_consen 89 MRDRVTQVVLGTFI----GTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIH 147 (371)
T ss_pred HhCchHHHHHHHHH----HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 222222222222222222224588899999999999999999965
No 122
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.84 E-value=1.5 Score=47.94 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=41.8
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec-------------ccccccCccceEEee
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-------------ATDWYICQVNLFLFS 639 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d-------------kt~Ca~CqG~G~~~~ 639 (649)
.....|+.|. |+|..... ..+|+ .|.|+++.. ...|..|.|.|....
T Consensus 125 ~~~~iCs~C~-------GsGgksg~------------~~~C~-~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~ 184 (337)
T KOG0712|consen 125 SRNFICSKCS-------GSGGKSGS------------APKCT-TCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETIS 184 (337)
T ss_pred ccCccCCcCC-------CCCCCCCC------------CCCCC-CCCCCCceeEEEeccccccccceeEeccCCCcccccc
Confidence 4567899999 99965432 12688 799887654 367999999999999
Q ss_pred ehhhhhh
Q 006345 640 ILNQCLS 646 (649)
Q Consensus 640 ~~~~~~~ 646 (649)
.++.|..
T Consensus 185 ~kd~C~~ 191 (337)
T KOG0712|consen 185 LKDRCKT 191 (337)
T ss_pred ccccCcc
Confidence 9999964
No 123
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=71.05 E-value=30 Score=32.82 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=5.9
Q ss_pred HHHHHHhhhhhhH
Q 006345 297 TILLWLYGSFWTT 309 (649)
Q Consensus 297 ~~ilw~~~~fw~t 309 (649)
++.+|+|.+.+..
T Consensus 69 ~~~~~~~~~~~~~ 81 (153)
T PF03208_consen 69 VVALWAFIYKSRK 81 (153)
T ss_pred HHHHHHHHhhhcc
Confidence 4444554444443
No 124
>PRK01766 multidrug efflux protein; Reviewed
Probab=69.59 E-value=1.8e+02 Score=31.93 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHH
Q 006345 291 VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFIT 332 (649)
Q Consensus 291 iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~ 332 (649)
++.+...++.|+..++.+.++-+++.|.+-.....++..++.
T Consensus 353 v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 394 (456)
T PRK01766 353 VVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFIT 394 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHH
Confidence 344444455555555566666666677666666655544443
No 125
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=67.35 E-value=1e+02 Score=29.09 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q 006345 272 VLVVAALVAFFIGFALALVVVALS 295 (649)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~iv~~~ 295 (649)
..--+...-.++|.+.-.+++|..
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l 80 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTL 80 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHH
Confidence 444445555666666666555543
No 126
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=67.24 E-value=23 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchh
Q 006345 290 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHE 325 (649)
Q Consensus 290 ~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~ 325 (649)
.++++++++++|+... +.+.+..++.+....+-|+
T Consensus 100 ~~~~~~~~~~l~~~~~-~~~l~~~l~~~~~lvl~HA 134 (153)
T PF03208_consen 100 LALLIVSILLLFFTSA-GLTLFWSLGASVLLVLLHA 134 (153)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555333 4444444445544444444
No 127
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.12 E-value=2.1e+02 Score=34.71 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=33.5
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 196 NAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRG-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLM 271 (649)
Q Consensus 196 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg-~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~ 271 (649)
-+--.+.+++|..||. ||+ ||- .|||--=|- -|+|+..|+.-..=|+|++++-+
T Consensus 42 ~~d~~~~~r~e~~~p~---wl~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~p~ 96 (697)
T PF09726_consen 42 LADFMLEFRFEYLWPF---WLL-----------------LRSVYDSFKYQGL--AFSVFFVCIAFTSDLICLFFIPV 96 (697)
T ss_pred HHHHHhhhHHHHHHHH---HHH-----------------HHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577889999996 221 111 122222222 28888888887778889887654
No 128
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=66.46 E-value=99 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.573 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 006345 287 LALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 319 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~ 319 (649)
..++|.+++--+++.+-|.+|......+++|..
T Consensus 61 G~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gli 93 (189)
T TIGR02185 61 GVIFIFGILLGLLFFLMGMYWPMIISSIIGGLL 93 (189)
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345666666556677888888877777777654
No 129
>PRK11827 hypothetical protein; Provisional
Probab=63.41 E-value=4.8 Score=33.87 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=25.7
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
-..||.|+|.=. .........|..|+...|++||=
T Consensus 8 ILaCP~ckg~L~----~~~~~~~Lic~~~~laYPI~dgI 42 (60)
T PRK11827 8 IIACPVCNGKLW----YNQEKQELICKLDNLAFPLRDGI 42 (60)
T ss_pred heECCCCCCcCe----EcCCCCeEECCccCeeccccCCc
Confidence 358999999732 22334567899999999998873
No 130
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.03 E-value=6.3 Score=40.96 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 006345 281 FFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (649)
Q Consensus 281 ~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~ 321 (649)
..+||-.-.+.|+. ++.|+...+.+.-++++..|++++
T Consensus 158 ~IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WS 195 (234)
T KOG2946|consen 158 CILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWS 195 (234)
T ss_pred hhhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788877777765 689999999999999999998877
No 131
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=63.03 E-value=1.1e+02 Score=37.55 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=65.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006345 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIG 284 (649)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g 284 (649)
.++.||-+.+-.-.....+++....|-=-. .+-+++- |.++|..-||+.|++|+..++.... .+-.-+--
T Consensus 70 ~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~ft~~--~lY~rhy~ 139 (1318)
T KOG3618|consen 70 LERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLFTFT--KLYARHYA 139 (1318)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHHHHH--HHHHHHhh
Confidence 455666666554444445555555663111 1234444 7889999999998888776654321 11111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 006345 285 FALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS 356 (649)
Q Consensus 285 ~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~Nla 356 (649)
-|-.+....++++-+ +++.--+..+|+---..|+.-+-.+.+||-+-----|||+.+.+--+
T Consensus 140 ~TS~~~tlLvc~~tL----------a~ltat~r~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi~YS 201 (1318)
T KOG3618|consen 140 WTSLALTLLVCALTL----------ANLTATARPAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGIAYS 201 (1318)
T ss_pred HHHHHHHHHHHHHHH----------HHhhhccchhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222222222222222 12222223344444445555555566666666556666666555433
No 132
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=62.45 E-value=2.2e+02 Score=34.48 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=35.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhh---hhhhHHHHHHh--hhhhcccch-hhHHHHHHH-----HHHhhhh----hhhhhh
Q 006345 282 FIGFALALVVVALSGTILLWLYG---SFWTTFFVIFL--GGLAFKFTH-ERLALFITT-----MYSIYCA----WTYVGW 346 (649)
Q Consensus 282 ~~g~~~~~~iv~~~~~~ilw~~~---~fw~t~~~~i~--gg~~f~~~h-~r~~~~i~~-----~y~iy~~----~~~~gw 346 (649)
.+....+++...++.+.++.+++ +.|++.++.+- ...++.-++ .|-.++-.. ++.++.+ .+-.-|
T Consensus 350 lv~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~s~~~~~~~l~~~s~rs~i~~~g~~~~~~~m~~~l~l~~~~~~~~ 429 (700)
T COG1480 350 LVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSW 429 (700)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444544455555555555 45555555444 222222232 333322221 2222222 445567
Q ss_pred hhHHHHhhhhhhh
Q 006345 347 LGLLLALNLSFVS 359 (649)
Q Consensus 347 lg~~ls~NlaflS 359 (649)
....+..=.+|+|
T Consensus 430 ~~~~~~~~~~fls 442 (700)
T COG1480 430 YDALQDAIFAFLS 442 (700)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666666
No 133
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=61.95 E-value=5.1 Score=30.65 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=24.2
Q ss_pred cccccccccCccceeeeccCccccccCcccc
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
+.++||.|.|+..+.++.+.+.-.-.|..|.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 4578999999877666666666677899996
No 134
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=61.16 E-value=4.2 Score=31.59 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=18.1
Q ss_pred cccccccccCcccee-eeccCccccccCcccc
Q 006345 552 RRIACKKCNNFHVWI-ETKKSKASARWCQECN 582 (649)
Q Consensus 552 r~V~C~kC~GtG~~~-~T~ks~s~artC~~C~ 582 (649)
+..+||.|.|+..+. .+.+.+.-.-+|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 457899999998766 6666666778899995
No 135
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=58.04 E-value=22 Score=33.16 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHH----HHHHHHHHHHHHHhhhhh
Q 006345 454 VDVSILKREYRKKAMLVHPDKNMGNEKA----VEAFKKLQNAYEVLFDSF 499 (649)
Q Consensus 454 As~~EIKKAYRKLAlk~HPDKn~~~p~A----~e~Fk~I~~AYeVLSDp~ 499 (649)
.+..++|.|.|..-++.|||.....|++ ++.++.++.-.+.|..+.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 5667999999999999999987666653 356777777777776543
No 136
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=57.02 E-value=2.4e+02 Score=31.57 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHh
Q 006345 330 FITTMYSIYCAWTYVGWLGLLLAL 353 (649)
Q Consensus 330 ~i~~~y~iy~~~~~~gwlg~~ls~ 353 (649)
.+..+.+++.-.+|.||+|++.++
T Consensus 205 ~~l~~~~L~lT~SRg~wl~l~~~~ 228 (425)
T TIGR00947 205 LGVNALCLLFTYSRGGWLGLLAAL 228 (425)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHH
Confidence 334567788889999998876554
No 137
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.81 E-value=26 Score=42.17 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=23.1
Q ss_pred hhhhhhHHHHHHHHhHHHH----HHHHHHHHHhcCch
Q 006345 157 VKLSVNVVVRSLRVYVVPT----LKAAIELLERQSPM 189 (649)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 189 (649)
-.++-++-++.+|-++--+ ++.|..+.|++.|.
T Consensus 656 k~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp 692 (1189)
T KOG2041|consen 656 KTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP 692 (1189)
T ss_pred cceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch
Confidence 3456677788888765322 46788899988886
No 138
>PRK10189 MATE family multidrug exporter; Provisional
Probab=56.21 E-value=2.3e+02 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=11.3
Q ss_pred hhHHHHHHHHhHHHHHHHH
Q 006345 161 VNVVVRSLRVYVVPTLKAA 179 (649)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (649)
...+..-+|..++++.=.+
T Consensus 146 ~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 146 KALALTYLELTVWSYPAAA 164 (478)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456667777666554443
No 139
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=56.07 E-value=9.8 Score=36.95 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=12.2
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
..|..|.|.+ -..|..|+
T Consensus 100 ~~C~~Cgg~r-----------fv~C~~C~ 117 (147)
T cd03031 100 GVCEGCGGAR-----------FVPCSECN 117 (147)
T ss_pred CCCCCCCCcC-----------eEECCCCC
Confidence 4588887764 24588887
No 140
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=55.33 E-value=87 Score=36.35 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 006345 248 SFFSVIWCSILSVIAMVG 265 (649)
Q Consensus 248 ~~~~~~w~~~~s~~~~~~ 265 (649)
++++++|+.++.++++.+
T Consensus 50 ~~~~~~~~~~~~~~~l~~ 67 (522)
T PRK09598 50 MLVVLLFCVNGLLFLLLG 67 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554444
No 141
>PF13446 RPT: A repeated domain in UCH-protein
Probab=55.33 E-value=19 Score=29.41 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHH
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAM 468 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAl 468 (649)
.+-|++||+++ +.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~--~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDE--DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCC--CCCHHHHHHHHHHHHH
Confidence 35699999988 7899999999999877
No 142
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=55.08 E-value=49 Score=33.20 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhh
Q 006345 282 FIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 282 ~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
-++++.++.++|+..+++.|+|.
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 45778888888888888888776
No 143
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.98 E-value=60 Score=31.83 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 006345 270 LMVLVVAALVAFFIG 284 (649)
Q Consensus 270 l~~~~~~~~~~~~~g 284 (649)
|++.|+++++.+..|
T Consensus 18 li~~gI~~Lv~~~~~ 32 (191)
T PF04156_consen 18 LIASGIAALVLFISG 32 (191)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455555555444433
No 144
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=54.94 E-value=37 Score=35.61 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 006345 479 EKAVEAFKKLQNAYEVLFDS 498 (649)
Q Consensus 479 p~A~e~Fk~I~~AYeVLSDp 498 (649)
+.-...++.+.++.+.+.+.
T Consensus 239 ~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 239 NRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666665543
No 145
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=54.68 E-value=27 Score=35.54 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhh
Q 006345 453 NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (649)
Q Consensus 453 ~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp 498 (649)
+|+.|||++|+.++..+|- +|+ +.-.+|..||+.+-=.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAILME 40 (194)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHHHH
Confidence 7999999999999999982 233 4445799999876533
No 146
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=53.72 E-value=98 Score=35.14 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=32.7
Q ss_pred hh---hhcchhhhhh--ccchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 006345 232 DC---TIRGIDSFMR--MGTTSFFSVIWCSIL----------SVIAMVGMFKFLMVLVVAALV 279 (649)
Q Consensus 232 ~~---~~rg~~~~~~--~g~~~~~~~~w~~~~----------s~~~~~~~~~~l~~~~~~~~~ 279 (649)
|| ..-|..++.| +|.+.||++|....+ .+=.-.+.+|+|+.+++..+.
T Consensus 64 ~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~ 126 (429)
T PF03348_consen 64 DCPSDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGA 126 (429)
T ss_pred CcchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHhee
Confidence 66 5668888888 477778888877666 233446777887776655443
No 147
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=52.22 E-value=2.6e+02 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHhhhh-hhcchhhhhhccchhHHHHHHHHHHHHHHH
Q 006345 225 LLSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAM 263 (649)
Q Consensus 225 ~~~~~w~~~-~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~ 263 (649)
+.+..|.-| ..+.-..-.++.--..|.+.....++.+..
T Consensus 51 l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~ 90 (212)
T cd06181 51 LGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILS 90 (212)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 444445555665555566655555555443
No 148
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=52.08 E-value=1.4e+02 Score=36.62 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=6.1
Q ss_pred hhhhhhhhHH
Q 006345 341 WTYVGWLGLL 350 (649)
Q Consensus 341 ~~~~gwlg~~ 350 (649)
+.++||+|..
T Consensus 361 rlFigWFGpR 370 (810)
T TIGR00844 361 AMFIGHFGPI 370 (810)
T ss_pred HHHheeeccc
Confidence 4467777643
No 149
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=51.34 E-value=60 Score=33.35 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 006345 255 CSILSVIAMVGMFK 268 (649)
Q Consensus 255 ~~~~s~~~~~~~~~ 268 (649)
-+||.+++.+|++.
T Consensus 16 G~~f~ligaIGLlR 29 (197)
T PRK12585 16 GGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHh
Confidence 44445555555544
No 150
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=50.31 E-value=2.1e+02 Score=30.37 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 006345 215 HLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL----SVIAMVGMFKFLMVLVVAALVAFFIGFALALV 290 (649)
Q Consensus 215 ~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~----s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 290 (649)
+...+..++.++..-|+-|....++.++==.|.+.+..+|-.+- ---..+-+..+++.+++|++++..+|...|..
T Consensus 12 ~~~~~~~~~~~l~~Wq~~~~~~~~~~~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~ 91 (258)
T COG0600 12 ALLPLLGLLALLALWQLAARLGLIPPFILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55556666666666666666666788888888888888877665 23345667888999999998888888877643
Q ss_pred ------------------HHHHHHHHHHHHhhhhhh
Q 006345 291 ------------------VVALSGTILLWLYGSFWT 308 (649)
Q Consensus 291 ------------------iv~~~~~~ilw~~~~fw~ 308 (649)
.+++..++|+|+=-.-+-
T Consensus 92 ~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s 127 (258)
T COG0600 92 RLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETS 127 (258)
T ss_pred HHHHHHHhHHHHHHhcCCHHHHHHHHHHHHhCCcch
Confidence 467888999997544443
No 151
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=49.95 E-value=3.4e+02 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhhh
Q 006345 332 TTMYSIYCAWTYVGWLGLLLALNLS 356 (649)
Q Consensus 332 ~~~y~iy~~~~~~gwlg~~ls~Nla 356 (649)
+++.+++---...|-+|++|++=++
T Consensus 294 ~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 294 VVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444433445555777777654
No 152
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=49.77 E-value=8.1 Score=42.45 Aligned_cols=33 Identities=30% Similarity=0.785 Sum_probs=26.2
Q ss_pred cccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeE
Q 006345 550 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQ 607 (649)
Q Consensus 550 isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~q 607 (649)
.+..+.|..|+|.| |..|+ |.||+|.- +-||+.
T Consensus 257 ~Evdv~~~~~~g~g--------------c~~ck-------~~~WiEil----G~Gmv~ 289 (339)
T PRK00488 257 AEVDVSCFKCGGKG--------------CRVCK-------GTGWLEIL----GCGMVH 289 (339)
T ss_pred eEEEEEEeccCCCc--------------ccccC-------CCCceEEe----ccCccC
Confidence 45678999999875 99999 99999973 456653
No 153
>PLN02922 prenyltransferase
Probab=48.92 E-value=1.4e+02 Score=32.43 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=34.6
Q ss_pred hhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhh
Q 006345 234 TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI-GFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 234 ~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~iv~~~~~~ilw~~~ 304 (649)
..||.|..-|-|+.-+.- |--.+..+..+++.+++.+.+...+ .-.+.++++|+.|+++-|+|.
T Consensus 76 ~~~G~D~~~~~~~~~~~~-------s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 76 ADTGVDKNKKESVVNLVG-------SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hccCcCcccCCCCCCccc-------CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 589999877776433321 2222222222222222222222211 123668889999999999986
No 154
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=48.64 E-value=3.5e+02 Score=28.96 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch----------hhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006345 214 NHLGHFAKIMLLLSMLWLDCTIRGI----------DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 283 (649)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~----------~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~ 283 (649)
.|+-.+||+..=++.+ +.|| .-..||.-.++++-+=-.+. .+...-..++..+.++..+...+
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l~--~~~~~~~NI~fTLalgl~~l~~~ 130 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYLA--GFPWYEGNILFAFAVAAQVLTWC 130 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH--hcccccCcHHHHHHHHHHHHHHH
Confidence 4677788888777665 7887 34556655444332100000 11112225555555555555555
Q ss_pred hhhhHHHHHHH--HHHHH-HHHhhhhhhHHHHHHhhhhhc
Q 006345 284 GFALALVVVAL--SGTIL-LWLYGSFWTTFFVIFLGGLAF 320 (649)
Q Consensus 284 g~~~~~~iv~~--~~~~i-lw~~~~fw~t~~~~i~gg~~f 320 (649)
-.....+.+++ .+++. .++.+..+..+++++++=+.|
T Consensus 131 e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~ 170 (248)
T PRK13706 131 ETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRL 170 (248)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33221111111 11222 223354666666666666644
No 155
>PHA03239 envelope glycoprotein M; Provisional
Probab=47.80 E-value=99 Score=35.32 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw 301 (649)
.+||++-.|-..+..+.+..++-++..+.+=.++..|+---+|..+=.++|..|||
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~ 309 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAG 309 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999999999999
No 156
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=47.72 E-value=11 Score=31.76 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.2
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
-..||.|+|.= + ........+|+.|++..|++||=
T Consensus 8 iLaCP~~kg~L-~---~~~~~~~L~c~~~~~aYpI~dGI 42 (60)
T COG2835 8 ILACPVCKGPL-V---YDEEKQELICPRCKLAYPIRDGI 42 (60)
T ss_pred eeeccCcCCcc-e---EeccCCEEEecccCceeecccCc
Confidence 35799999982 2 22334588999999999998874
No 157
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=47.52 E-value=19 Score=28.90 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHH
Q 006345 329 LFITTMYSIYCAWTYVGWLGLLL 351 (649)
Q Consensus 329 ~~i~~~y~iy~~~~~~gwlg~~l 351 (649)
.|+|++|++..+-..+.|.|+++
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~I 25 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSI 25 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888899988764
No 158
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=47.44 E-value=1.9e+02 Score=31.47 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHh-hhhhhcchhhhhhccchh
Q 006345 216 LGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 248 (649)
Q Consensus 216 ~~~~~~~~~~~~~~w-~~~~~rg~~~~~~~g~~~ 248 (649)
....+.+++|++... ..-.+.|-.+.+++|+-+
T Consensus 68 ~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 68 ILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 344567777777777 899999999999999654
No 159
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=46.70 E-value=2.5e+02 Score=30.18 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhh
Q 006345 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 326 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r 326 (649)
..+++.-| -++.--..-.+-++.+-+.+-+++...+.-+.-.-.+.-+..++++....+.+..++..+....|....++
T Consensus 15 ~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T PF03547_consen 15 LGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEW 93 (385)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHhhhh----------------hhhHHHHHHHHhhhhccCCCCCCCccCCCCCCCC
Q 006345 327 LALFITTMYSIYCAWTYVGWLGLLLALNLS----------------FVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGP 390 (649)
Q Consensus 327 ~~~~i~~~y~iy~~~~~~gwlg~~ls~Nla----------------flS~diL~~lLq~~~~e~~~ss~~eq~~~ss~~~ 390 (649)
. ..+.+.|...-.|.+|+++...+. ++-.-+...++....++.....+++++..+....
T Consensus 94 ~-----~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 168 (385)
T PF03547_consen 94 R-----GVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSE 168 (385)
T ss_pred c-----eEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccccccccccccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 006345 391 SFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVV 434 (649)
Q Consensus 391 ~~fs~eSs~~Ssses~~s~sss~~~~~~sts~~ds~~tseeev~ 434 (649)
..-+.+.....++ ...........+.......+...+..+...
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (385)
T PF03547_consen 169 QEDSDEMSLDGSS-PSSTEEEIDEDGSPSSTPSQSSASAPSSVS 211 (385)
T ss_pred ccCCccccCCccc-ccccccccccCCcccccccccccccchhhc
No 160
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=46.68 E-value=1.3e+02 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 006345 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (649)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg 317 (649)
.++++.+.+-+++.-+..|+++.++++++-
T Consensus 76 ~~~~~~~~~y~~~~~~lGf~~at~~~~~~~ 105 (141)
T PF07331_consen 76 LLVLGLLVLYVLLLEYLGFIIATFLFLFAF 105 (141)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333434444445666666666655443
No 161
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.57 E-value=2.3e+02 Score=34.33 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 006345 250 FSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 303 (649)
Q Consensus 250 ~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~ 303 (649)
|=.+|-|.|.+-+++=-++.= |+| +-++|+..++-.=+|-+|=|-+-|+|
T Consensus 51 ~e~~~p~wl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~~~~~~p~~~~~ 100 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYDSFKYQ---GLA-FSVFFVCIAFTSDLICLFFIPVHWLF 100 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999988887666543 222 33344444444444444444455554
No 162
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=46.07 E-value=1.1e+02 Score=32.35 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 006345 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI 313 (649)
Q Consensus 248 ~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~ 313 (649)
-+..|=|-..+++++++++++..+- ++...|.+|+.-| +.-.||+|+-+.
T Consensus 57 tv~ii~~~F~~~~~~wI~ifqyvf~----~iaa~f~~yG~~i------------l~egF~ttgA~r 106 (248)
T KOG4800|consen 57 TVLIIEQYFSINIVSWICIFQYVFY----GIAAFFFLYGILI------------LAEGFYTTGAVR 106 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHH------------HhhhhhhhhhHH
Confidence 3556778888899999999987543 3334455553322 344678888776
No 163
>PRK10209 acid-resistance membrane protein; Provisional
Probab=45.42 E-value=2.4e+02 Score=28.25 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 006345 269 FLMVLVVAALV 279 (649)
Q Consensus 269 ~l~~~~~~~~~ 279 (649)
++++-|+..++
T Consensus 56 ~ll~~Gi~~l~ 66 (190)
T PRK10209 56 LLICSGIALIV 66 (190)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 164
>PRK10726 hypothetical protein; Provisional
Probab=44.55 E-value=93 Score=29.08 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=37.4
Q ss_pred hhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 006345 241 FMRMGTTS--FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 241 ~~~~g~~~--~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
|+=.|++. ||+-.|=.||.+.-.+-++-+++.+-.-+=++.-+. .-++.|+++|+.+.+|+.|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~l-~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLLYSIL-FTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 34445554 456679999987766554444444433333333333 3356778888888888754
No 165
>PRK13591 ubiA prenyltransferase; Provisional
Probab=44.05 E-value=1.4e+02 Score=32.76 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 006345 286 ALALVVVALSGTILLWLYGS 305 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~ 305 (649)
..++++++++++++.|+|..
T Consensus 118 ~~g~~ll~ll~~l~g~lYS~ 137 (307)
T PRK13591 118 MDGMLLLAFLPFITGYLYSK 137 (307)
T ss_pred HHhHHHHHHHHHHHHHHhcC
Confidence 33445678888888999985
No 166
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.44 E-value=12 Score=44.48 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=33.4
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCcc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQV 633 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~CqG 633 (649)
+.|+.|+.. ....++.|+.|+ .- +. ..+|+ .|.-.--....-|+.|.-
T Consensus 2 ~~Cp~Cg~~--------n~~~akFC~~CG--------~~--------l~-------~~~Cp-~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE--------NPNNNRFCQKCG--------TS--------LT-------HKPCP-QCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc--------CCCCCccccccC--------CC--------CC-------CCcCC-CCCCCCCcccccccccCC
Confidence 479999865 256678899997 11 00 12588 798777777788988864
No 167
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=42.83 E-value=2.1e+02 Score=30.47 Aligned_cols=120 Identities=15% Similarity=0.196 Sum_probs=72.8
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCchHHHHHhhhhhhHhhhhhhhhHHHHHHHH-----------------
Q 006345 155 EKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLG----------------- 217 (649)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------- 217 (649)
.|-|.-..++....=-+.++++.++.+.=+=|.++.+.-+ +-.++..+.-.||+.++-..
T Consensus 62 ~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi---~ifigdlirlnWP~FsrLy~r~lg~lmre~erhl~nG 138 (269)
T KOG4453|consen 62 LKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFI---HIFIGDLIRLNWPIFSRLYIRGLGILMREVERHLLNG 138 (269)
T ss_pred hhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHH---HHHHhHHHHhccHHHHHHHHhcccccchHHHHHHhcc
Confidence 3456666777777778889999998877666666622211 33456677888998764321
Q ss_pred ---HHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 006345 218 ---HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF--------- 285 (649)
Q Consensus 218 ---~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~--------- 285 (649)
....|..-+..+|+|.+| .++++.+|| =++|..|+-=+|-
T Consensus 139 vLfYvLgl~fs~~ff~kespi-----------~s~~Llswc-----------------Dt~AdtvGRKfG~~tpk~aknK 190 (269)
T KOG4453|consen 139 VLFYVLGLLFSAVFFWKESPI-----------GSISLLSWC-----------------DTIADTVGRKFGSTTPKYAKNK 190 (269)
T ss_pred hHHHHHHHHHHhhccccccHH-----------HHHHHHHHh-----------------hhHHHHHhhhccccCCCcCCCc
Confidence 122233333445555544 344455555 3566666655553
Q ss_pred ----hhHHHHHHHHHHHHHHHhhh
Q 006345 286 ----ALALVVVALSGTILLWLYGS 305 (649)
Q Consensus 286 ----~~~~~iv~~~~~~ilw~~~~ 305 (649)
..|.|++|+|.-+..|.|..
T Consensus 191 SlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 191 SLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred cccchHHHHHHHHHHHHHHHHHHh
Confidence 25778888888777777765
No 168
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=42.76 E-value=33 Score=36.83 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=18.9
Q ss_pred cccccccccCccceeeeccCccccccCcccc
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
...+|..|.+.=.. ....+...-||+.|+
T Consensus 244 ~GepC~~CGt~I~k--~~~~gR~t~~CP~CQ 272 (273)
T COG0266 244 AGEPCRRCGTPIEK--IKLGGRSTFYCPVCQ 272 (273)
T ss_pred CCCCCCccCCEeEE--EEEcCCcCEeCCCCC
Confidence 34579999886322 223455678899996
No 169
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=42.46 E-value=39 Score=42.00 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhh
Q 006345 325 ERLALFITTMYSIYCAWTYVG 345 (649)
Q Consensus 325 ~r~~~~i~~~y~iy~~~~~~g 345 (649)
.++-+.+..+|.+|++....-
T Consensus 1065 R~lGivlLvlYvvFLV~aiLi 1085 (1096)
T TIGR00927 1065 KILGFTMFLLYFVFLIISVML 1085 (1096)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666654433
No 170
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.37 E-value=19 Score=44.54 Aligned_cols=34 Identities=35% Similarity=0.805 Sum_probs=19.0
Q ss_pred ccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceE
Q 006345 576 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 622 (649)
Q Consensus 576 rtC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi 622 (649)
-.|+.|+ |.|++....+ |.+. +..+|+ +|.|.+.
T Consensus 737 G~C~~C~-------G~G~~~~~~~-f~~~----~~~~C~-~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQ-------GDGVIKIEMH-FLPD----VYVPCE-VCKGKRY 770 (924)
T ss_pred CCCCCCc-------cceEEEEEcc-CCCC----cccCCC-CcCCcee
Confidence 3588888 8888876432 3221 234565 4554443
No 171
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=42.13 E-value=3.8e+02 Score=28.93 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHhhh
Q 006345 330 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSK 370 (649)
Q Consensus 330 ~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~~lLq~~ 370 (649)
.++++.++..--.-+|..|++++.=++-+--+++.......
T Consensus 304 p~~ilisll~g~~l~G~~G~ila~pl~~~~k~~~~~~~~~~ 344 (355)
T COG0628 304 PLVILLSLLGGGSLFGFVGLILAPPLAAVLKVLLRAWLEEE 344 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555667888899999988877666666666633
No 172
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=42.03 E-value=2.8e+02 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006345 206 QQVYPVALNHLGHFAKIMLLLSMLWLD 232 (649)
Q Consensus 206 ~~~~p~~~~~~~~~~~~~~~~~~~w~~ 232 (649)
.+.||.+..+++-...++++.......
T Consensus 34 p~~fP~~l~~~l~~~~~~l~~~~~~~~ 60 (141)
T PF07331_consen 34 PGFFPRLLGILLLILSLLLLVRSFRGP 60 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467999999999999888887766653
No 173
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=41.33 E-value=1.7e+02 Score=35.04 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhh
Q 006345 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 326 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r 326 (649)
+++-.|.|.-=|...++.++ -+|...|+-++.+.++|--+--+-++++-++- +-.+-+++||..|..|-
T Consensus 7 ~~~~~ifw~wnlt~~~l~~~-~i~pf~~~p~i~~~~~g~~~~~~a~~~i~lia--------ip~i~~~ig~~~f~~~p-- 75 (952)
T TIGR02921 7 ACCEGIFWFWNLTFASLTGL-GILPFFGLPAILAAAIGDHPIEFALALILLIA--------IPAICIGIGGTCFLKNP-- 75 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHcccchHHHHHHHHHHHH--------HHHHHhhhcchhhhcCc--
Confidence 45666777766665555543 35566777777777777766544443321111 22345566666665552
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHH
Q 006345 327 LALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFF 366 (649)
Q Consensus 327 ~~~~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~~l 366 (649)
+.||-..|.+=---++.--+-+||.+.|.--|+.||+-+
T Consensus 76 -~~liklfygve~pi~~i~l~~lflirel~p~~s~ili~~ 114 (952)
T TIGR02921 76 -TALIKLFYGVEAPIFFICLLRLFLIRELNPASSHILINI 114 (952)
T ss_pred -HHHHHHHHcccchHHHHHHHHHHHHHhcCcchhhHHHHH
Confidence 223444454333333444455677777776666555443
No 174
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.79 E-value=14 Score=45.65 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=25.5
Q ss_pred ecccccccCceEec---------ccccccCccceEEeeehh
Q 006345 611 VPCAYVCANSRIYN---------ATDWYICQVNLFLFSILN 642 (649)
Q Consensus 611 ~pC~y~C~Gsgi~d---------kt~Ca~CqG~G~~~~~~~ 642 (649)
-.|+ .|.|.|+.. ..+|+.|+|.+|-..++.
T Consensus 737 G~C~-~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~ 776 (924)
T TIGR00630 737 GRCE-ACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLE 776 (924)
T ss_pred CCCC-CCccceEEEEEccCCCCcccCCCCcCCceeChHHHh
Confidence 3599 899999887 579999999998766543
No 175
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=40.59 E-value=2.4e+02 Score=30.19 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHH
Q 006345 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVI 253 (649)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~ 253 (649)
-.+.|-++...+.|+|-+=++.=++|+=-. |-.---++|+.-|+.+.
T Consensus 132 ~~q~WRl~T~~flH~~~~Hl~fNml~l~~l--G~~iE~~~G~~~~l~l~ 178 (276)
T PRK10907 132 KFELWRYFTHALLHFSLLHILFNLLWWWYL--GGAVEKRLGSGKLIVIT 178 (276)
T ss_pred cCCcHHHHhHHHHhCCHHHHHHHHHHHHHH--HHHHHHHHChHHHHHHH
Confidence 347799999999999877666655555332 22222467777665553
No 176
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=40.31 E-value=41 Score=36.61 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006345 248 SFFSVIWCSILSVIAMV 264 (649)
Q Consensus 248 ~~~~~~w~~~~s~~~~~ 264 (649)
-||++||+.++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999976665
No 177
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=40.23 E-value=20 Score=34.91 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=19.1
Q ss_pred ccccccccccCccceeeeccC--ccccccCcccc
Q 006345 551 SRRIACKKCNNFHVWIETKKS--KASARWCQECN 582 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~ks--~s~artC~~C~ 582 (649)
.+.++|..|+|++. ++.... ....+.|+.|+
T Consensus 108 ~rfv~C~~C~Gs~k-~~~~~~~~~~~~~rC~~Cn 140 (147)
T cd03031 108 ARFVPCSECNGSCK-VFAENATAAGGFLRCPECN 140 (147)
T ss_pred cCeEECCCCCCcce-EEeccCcccccEEECCCCC
Confidence 57899999999863 222221 23345666666
No 178
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=40.17 E-value=1e+02 Score=33.36 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 006345 287 LALVVVALSGTILLWLYGS 305 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (649)
+.++++|+.|+++.|.|..
T Consensus 114 ~~~l~igl~g~~~~~~Yt~ 132 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTG 132 (317)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 4568889999999999964
No 179
>PRK10160 taurine transporter subunit; Provisional
Probab=39.69 E-value=4.4e+02 Score=27.64 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhH
Q 006345 268 KFLMVLVVAALVAFFIGFALA 288 (649)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~~~~ 288 (649)
.++++++++.+++..+|+..+
T Consensus 86 ~~~~g~~ia~~ig~~lg~~~~ 106 (275)
T PRK10160 86 RIVLALLAAVVIGIPVGIAMG 106 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444
No 180
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=39.63 E-value=3.2e+02 Score=31.82 Aligned_cols=41 Identities=27% Similarity=0.634 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhh---cchhhhhhccch------------------hHHHHHHHHHHHHHH
Q 006345 222 IMLLLSMLWLDCTI---RGIDSFMRMGTT------------------SFFSVIWCSILSVIA 262 (649)
Q Consensus 222 ~~~~~~~~w~~~~~---rg~~~~~~~g~~------------------~~~~~~w~~~~s~~~ 262 (649)
=+.+++.+|.-|.+ =|--+.+.|||+ -.|+-+|.+.+++.-
T Consensus 45 svg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p 106 (479)
T KOG1287|consen 45 SVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVP 106 (479)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhh
Confidence 46778889999964 466677777764 467888888776543
No 181
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=39.35 E-value=2e+02 Score=33.88 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhHH
Q 006345 247 TSFFSVIWCSILSVIAMVG------MFKFLMVLVVAALVAFFIGFALAL 289 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~------~~~~l~~~~~~~~~~~~~g~~~~~ 289 (649)
.++.++++++++.++++.+ +..+++++.+.++++.|.-.+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~K~~~~~l~l~sa~~~Yf~~~ygv 97 (558)
T PRK11560 49 VVELAATVLVTFFLLRLLSLFGRRFWRVLASLLVLFSAAASYYMTFFNV 97 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566677777766666665 223455566666666665444443
No 182
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=39.19 E-value=6.5e+02 Score=29.79 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 006345 267 FKFLMVLVVAALVAFFIGFALALVV 291 (649)
Q Consensus 267 ~~~l~~~~~~~~~~~~~g~~~~~~i 291 (649)
..++.++++.++++.|.++.-++++
T Consensus 71 k~~~~~l~l~sa~asy~~~~y~i~~ 95 (555)
T COG2194 71 KPLAGVLSLVSAAASYFAYFYGIII 95 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345566777777888888888776
No 183
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=38.97 E-value=23 Score=43.31 Aligned_cols=34 Identities=32% Similarity=0.794 Sum_probs=22.4
Q ss_pred cCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe
Q 006345 577 WCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 623 (649)
Q Consensus 577 tC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~ 623 (649)
.|..|+ |+|++....+ |.|.+ -.||+ +|.|...-
T Consensus 732 RCe~C~-------GdG~ikIeM~-FLpdV----yv~Ce-vC~GkRYn 765 (935)
T COG0178 732 RCEACQ-------GDGVIKIEMH-FLPDV----YVPCE-VCHGKRYN 765 (935)
T ss_pred CCcccc-------CCceEEEEec-cCCCc----eeeCC-CcCCcccc
Confidence 488898 9998877653 44433 35788 57665443
No 184
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=38.75 E-value=5.4e+02 Score=32.44 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=8.1
Q ss_pred CCCCCCCCccccccccc
Q 006345 111 GDSTDNISSRETCGVRI 127 (649)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (649)
|||....++.....+..
T Consensus 775 GDG~ND~~mlk~AdVGI 791 (1057)
T TIGR01652 775 GDGANDVSMIQEADVGV 791 (1057)
T ss_pred eCCCccHHHHhhcCeee
Confidence 45444455555544444
No 185
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=38.68 E-value=2.1e+02 Score=30.99 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 006345 287 LALVVVALSGTILLWLYGS 305 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (649)
+-++++|++|+++-|+|..
T Consensus 119 ~~~l~ig~~g~~~~~~YT~ 137 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQG 137 (304)
T ss_pred HHHHHHHHHHHHHhheccC
Confidence 5578888999999998853
No 186
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=38.20 E-value=4.7e+02 Score=29.72 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006345 249 FFSVIWCSILSVIAMVG 265 (649)
Q Consensus 249 ~~~~~w~~~~s~~~~~~ 265 (649)
=.++||-.++++++-..
T Consensus 238 H~l~~yGFil~f~aT~v 254 (389)
T PRK15033 238 HHLTFYGFMLCFAATVV 254 (389)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777666655543
No 187
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=38.10 E-value=1.7e+02 Score=25.90 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006345 258 LSVIAMVGMFKFLMVLVVAALVAFFIGFA 286 (649)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~~~g~~ 286 (649)
+|+.+.+| |+-=+||+++++..|+|..
T Consensus 10 lsIlcVSg--YigQVlg~~savSsf~gm~ 36 (80)
T PF10810_consen 10 LSILCVSG--YIGQVLGVASAVSSFFGMV 36 (80)
T ss_pred HHHHHhhh--HHHHHHHHHHHHHHHHHHH
Confidence 34444444 5556789999999988753
No 188
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=38.09 E-value=13 Score=39.30 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred ccccccccCccce-eeeccC--ccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCc---------
Q 006345 553 RIACKKCNNFHVW-IETKKS--KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANS--------- 620 (649)
Q Consensus 553 ~V~C~kC~GtG~~-~~T~ks--~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gs--------- 620 (649)
...||-|++.-.. ...+.. +.+-..|..| |+-|-..+ ..|+ .|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C--------~t~W~~~R-------------~~Cp-~Cg~~~~~~l~~~~ 229 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLC--------GTEWRFVR-------------IKCP-YCGNTDHEKLEYFT 229 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT----------EEE--T-------------TS-T-TT---SS-EEE---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCC--------CCeeeecC-------------CCCc-CCCCCCCcceeeEe
Confidence 3578888876321 122222 4566778888 46664432 2588 48732
Q ss_pred ----eEecccccccCcc
Q 006345 621 ----RIYNATDWYICQV 633 (649)
Q Consensus 621 ----gi~dkt~Ca~CqG 633 (649)
..+....|..|++
T Consensus 230 ~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 230 VEGEPAYRVEVCESCGS 246 (290)
T ss_dssp -----SEEEEEETTTTE
T ss_pred cCCCCcEEEEECCcccc
Confidence 1123567888874
No 189
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.05 E-value=3.1e+02 Score=33.50 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhhhhhhhh
Q 006345 325 ERLALFITTMYSIYCAWTYV 344 (649)
Q Consensus 325 ~r~~~~i~~~y~iy~~~~~~ 344 (649)
+|+..||..=.+||.+..++
T Consensus 259 ar~~~LI~iP~~iYl~~F~v 278 (723)
T KOG3359|consen 259 ARLFFLIGIPFLIYLLFFYV 278 (723)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888877777788777664
No 190
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=37.92 E-value=4.4e+02 Score=32.67 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=7.9
Q ss_pred HHHHHHhhhhhhhhhhh
Q 006345 331 ITTMYSIYCAWTYVGWL 347 (649)
Q Consensus 331 i~~~y~iy~~~~~~gwl 347 (649)
+..+..++.+|.-+.|+
T Consensus 331 lLaL~LifVrRPpaVll 347 (810)
T TIGR00844 331 ILSLVVIFLRRIPAVLI 347 (810)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555444554
No 191
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=37.77 E-value=24 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=19.2
Q ss_pred ccccccccccCcc-ceeeecc-CccccccCcccc
Q 006345 551 SRRIACKKCNNFH-VWIETKK-SKASARWCQECN 582 (649)
Q Consensus 551 sr~V~C~kC~GtG-~~~~T~k-s~s~artC~~C~ 582 (649)
+..|.||.|+.+. ++..... .+.+...|..|+
T Consensus 3 ~i~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 3 KIDVHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred cEeeeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 4567888888876 4433332 334555677774
No 192
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=37.55 E-value=66 Score=30.70 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccc
Q 006345 286 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~ 323 (649)
.-.+-++++.++-++||+|..=..-...+++|+...|-
T Consensus 71 g~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~iVFG 108 (120)
T PRK13857 71 GQSLAVLGIVAIGISWMFGRASLGLVAGVVGGIVIMFG 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheec
Confidence 34456778888999999998766666677777665554
No 193
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=37.53 E-value=4.7e+02 Score=27.53 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch
Q 006345 214 NHLGHFAKIMLLLSMLWLDCTIRGI 238 (649)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~ 238 (649)
.|+-..||+..=++. .+.||
T Consensus 34 ~~l~~iGR~AfPiF~-----lveGf 53 (224)
T TIGR02755 34 EWLFLAGRGAFPLFA-----LVWGL 53 (224)
T ss_pred HHHHHHHHHHHHHHH-----HHHHH
Confidence 467777887766554 67776
No 194
>PF13994 PgaD: PgaD-like protein
Probab=37.46 E-value=1.2e+02 Score=29.04 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=15.8
Q ss_pred hccchhHHHHHHHHHHHHHHH
Q 006345 243 RMGTTSFFSVIWCSILSVIAM 263 (649)
Q Consensus 243 ~~g~~~~~~~~w~~~~s~~~~ 263 (649)
|+....+-++.|+.|+.++..
T Consensus 14 r~~~~~lT~~~W~~~~yL~~p 34 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRP 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677778888899988776543
No 195
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.42 E-value=34 Score=41.32 Aligned_cols=53 Identities=15% Similarity=0.384 Sum_probs=34.4
Q ss_pred cccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccc
Q 006345 550 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 629 (649)
Q Consensus 550 isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca 629 (649)
+...+.|..|+-. -.|+.|. .+...... - -...|.| |.-. .-....|+
T Consensus 432 ys~~l~C~~Cg~v-------------~~Cp~Cd---------~~lt~H~~--~------~~L~CH~-Cg~~-~~~p~~Cp 479 (730)
T COG1198 432 YAPLLLCRDCGYI-------------AECPNCD---------SPLTLHKA--T------GQLRCHY-CGYQ-EPIPQSCP 479 (730)
T ss_pred ccceeecccCCCc-------------ccCCCCC---------cceEEecC--C------CeeEeCC-CCCC-CCCCCCCC
Confidence 4456899999864 3599997 22322211 1 1235885 8755 55678899
Q ss_pred cCccc
Q 006345 630 ICQVN 634 (649)
Q Consensus 630 ~CqG~ 634 (649)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99988
No 196
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=37.10 E-value=1e+02 Score=34.86 Aligned_cols=30 Identities=43% Similarity=0.690 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 006345 325 ERLALFITTMYSIYCAWTYVGWLGLLLALNL 355 (649)
Q Consensus 325 ~r~~~~i~~~y~iy~~~~~~gwlg~~ls~Nl 355 (649)
+||.+++..+=.|+.|+ +.||=|.+|+--+
T Consensus 204 ~rf~l~~l~lP~I~lA~-~yGWQG~llasll 233 (497)
T COG3851 204 SRFTLFCLALPIIALAW-HYGWQGALLASLL 233 (497)
T ss_pred hhHhHHHHHHHHHHHHH-HhcchHHHHHHHH
Confidence 69999999999999998 7799999887444
No 197
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=36.74 E-value=2e+02 Score=31.37 Aligned_cols=13 Identities=15% Similarity=0.713 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 006345 248 SFFSVIWCSILSV 260 (649)
Q Consensus 248 ~~~~~~w~~~~s~ 260 (649)
+++.-+|..++.+
T Consensus 101 ~~~~g~~~~~~~~ 113 (366)
T PRK10245 101 AVLAGMWVGVMGV 113 (366)
T ss_pred HHHHhHHHHHHcc
Confidence 3444445555433
No 198
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=36.32 E-value=5.3e+02 Score=30.55 Aligned_cols=69 Identities=23% Similarity=0.430 Sum_probs=40.4
Q ss_pred hcchhhhhhc---------cchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHH
Q 006345 235 IRGIDSFMRM---------GTTSFFSVIWCSILSVIA---MVGMFKFLMVLVVAALVAFF--------IGFALALVVVAL 294 (649)
Q Consensus 235 ~rg~~~~~~~---------g~~~~~~~~w~~~~s~~~---~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~iv~~ 294 (649)
+|.|++++.| =||.|+.+.++.|+.+.= =+|++.+| ++.+.... -....-+++.|+
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l----~~~~l~~~~~k~~~~~~~~~~il~~~gi 401 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLL----IGLLLSFKLKKKSEGLKRLLKILIYLGI 401 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4666666654 578889998888887641 23333332 22222211 122344566777
Q ss_pred HHHHHHHHhhhhh
Q 006345 295 SGTILLWLYGSFW 307 (649)
Q Consensus 295 ~~~~ilw~~~~fw 307 (649)
+.++.=++||+|+
T Consensus 402 ~sii~G~lyG~fF 414 (646)
T PRK05771 402 STIIWGLLTGSFF 414 (646)
T ss_pred HHHHHHHHHHhHh
Confidence 7777778888774
No 199
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.20 E-value=42 Score=36.17 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=31.4
Q ss_pred cccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecccccccCc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQ 632 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~Ca~Cq 632 (649)
-.|..|.|.++ ..|..|+ |+=.+..... ..+.+ ..|. .|++.|... |+.|.
T Consensus 230 ~~C~~CGg~rF-----------lpC~~C~-------GS~kv~~~~~--~~~~~----~rC~-~CNENGLvr---Cp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----------LPCSNCH-------GSCKVHEEEE--DDGGV----LRCL-ECNENGLVR---CPVCS 280 (281)
T ss_pred CcCCCcCCcce-----------EecCCCC-------Cceeeeeecc--CCCcE----EECc-ccCCCCcee---CCccC
Confidence 56888888652 2477888 6665544211 11222 2588 799888876 77774
No 200
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=36.18 E-value=4.8e+02 Score=28.45 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=35.4
Q ss_pred cccccCcccCCCCCHHHHHHHHHHHH-------HHhCCCCCCC---cHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006345 442 HYSALGLSRFENVDVSILKREYRKKA-------MLVHPDKNMG---NEKAVEAFKKLQNAYEVLFDSFKRKAYD 505 (649)
Q Consensus 442 ~YeILGV~~~~~As~~EIKKAYRKLA-------lk~HPDKn~~---~p~A~e~Fk~I~~AYeVLSDp~kR~~YD 505 (649)
+++-||++.. ..+.+|+++-.++++ .+.++|.+.. +-.-++.|+++.+||+.|.+.-..-.|.
T Consensus 84 l~~~l~l~~~-~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l~~~ 156 (318)
T PF12725_consen 84 LSERLGLETE-EYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFLSGY 156 (318)
T ss_pred HHHHcCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 3444555543 355666655554443 3344443311 0123688999999999998765444433
No 201
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=36.06 E-value=2.1e+02 Score=30.56 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 006345 288 ALVVVALSGTILLWLYGS 305 (649)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~ 305 (649)
.++++|+.|+++.|.|..
T Consensus 110 ~~l~lg~~~~~~~~~Yt~ 127 (284)
T TIGR00751 110 WFIALGALCIAAAITYTV 127 (284)
T ss_pred HHHHHHHHHHHHhHhhcC
Confidence 467899999999999964
No 202
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=35.93 E-value=99 Score=29.13 Aligned_cols=7 Identities=29% Similarity=0.225 Sum_probs=3.2
Q ss_pred HHHhhhh
Q 006345 334 MYSIYCA 340 (649)
Q Consensus 334 ~y~iy~~ 340 (649)
++.+||+
T Consensus 94 ~~i~y~a 100 (115)
T PF05915_consen 94 TRIAYYA 100 (115)
T ss_pred HHHHHHH
Confidence 4444444
No 203
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=35.74 E-value=6.8e+02 Score=29.42 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=6.7
Q ss_pred HHHHHHHHHHh
Q 006345 293 ALSGTILLWLY 303 (649)
Q Consensus 293 ~~~~~~ilw~~ 303 (649)
.+|.+++-||.
T Consensus 453 ~if~~i~Y~~~ 463 (617)
T TIGR00955 453 ALFTSITYWMI 463 (617)
T ss_pred HHHHhhhheec
Confidence 35666666663
No 204
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=35.36 E-value=4.1e+02 Score=28.13 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 006345 270 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFL 315 (649)
Q Consensus 270 l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~ 315 (649)
-++..+-..+...+...|.+++++++..++...+..+|+.+++-+.
T Consensus 25 ~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~ 70 (334)
T PF04515_consen 25 PFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLF 70 (334)
T ss_pred HHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777889999999999998888888888887765544
No 205
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.28 E-value=8.2e+02 Score=28.97 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006345 212 ALNHLGHFAKIMLLLSMLWL 231 (649)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~w~ 231 (649)
+...+.-+|-+.+++-+.|.
T Consensus 445 ~l~lsl~iGvi~i~~g~~l~ 464 (646)
T PRK05771 445 ILIISLLIGVIHLFLGLLLG 464 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655553
No 206
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=35.27 E-value=4.3e+02 Score=32.87 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred HhHHHHHHHHHHHHHhcCchHHH---HHhhhh-------hhHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 006345 170 VYVVPTLKAAIELLERQSPMLMT---NIYNAH-------DYVSRK-VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGI 238 (649)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~ 238 (649)
.+.+.+++++..|.|+.++-+.. .+.++- =+.... +.+||--|+.++.-|-..|-|++++
T Consensus 572 ~i~~~~~~E~iQifqqk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi--------- 642 (929)
T KOG0510|consen 572 SIILGILRECIQIFQQKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMI--------- 642 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 55678899999999999987221 111111 111222 5588888887777666666666553
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 239 DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLV 274 (649)
Q Consensus 239 ~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~ 274 (649)
+ ||---+.|+||.--++--+.=+.++|.+++++
T Consensus 643 ~---~~p~~gIfvvM~~~I~ktflk~f~vfs~llia 675 (929)
T KOG0510|consen 643 G---RFPVFGIFVVMLEVILKTFLKSFMVFSILLIA 675 (929)
T ss_pred c---cCCccceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333466777666555555555555544433
No 207
>PRK11383 hypothetical protein; Provisional
Probab=35.08 E-value=4.2e+02 Score=26.22 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---------------HHhhhhhhHH
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILL---------------WLYGSFWTTF 310 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~il---------------w~~~~fw~t~ 310 (649)
|.+|..+-|..++. |++-+++.|==|....-==||-.++|+.|+|+.+.. -+|+--|+..
T Consensus 9 t~af~~~sw~al~~-----g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~ 83 (145)
T PRK11383 9 SPAFSIVSWIALVG-----GIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVF 83 (145)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHH
Confidence 56777777766543 333334444444433333488889999999998872 5667777654
Q ss_pred H
Q 006345 311 F 311 (649)
Q Consensus 311 ~ 311 (649)
+
T Consensus 84 l 84 (145)
T PRK11383 84 I 84 (145)
T ss_pred H
Confidence 4
No 208
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.88 E-value=1.5e+02 Score=31.32 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.6
Q ss_pred HHHHhhhhhhhhhhhhHHHH
Q 006345 333 TMYSIYCAWTYVGWLGLLLA 352 (649)
Q Consensus 333 ~~y~iy~~~~~~gwlg~~ls 352 (649)
..|+.|.+- |+-|+|+|..
T Consensus 201 lwyi~Y~vP-Y~~~ig~~i~ 219 (230)
T PF03904_consen 201 LWYIAYLVP-YIFAIGLFIY 219 (230)
T ss_pred HHHHHHhhH-HHHHHHHHHH
Confidence 345555555 4447776643
No 209
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=29 Score=37.26 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=28.5
Q ss_pred cCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc--------cccccCccceEEe
Q 006345 577 WCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--------TDWYICQVNLFLF 638 (649)
Q Consensus 577 tC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk--------t~Ca~CqG~G~~~ 638 (649)
.|..|. |.+|+ ||. .|.|+..... ..|..|+=.|++-
T Consensus 231 ~C~~CG-------g~rFl-----------------pC~-~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 231 VCESCG-------GARFL-----------------PCS-NCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred cCCCcC-------CcceE-----------------ecC-CCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 599998 77653 688 8999855443 6899999998863
No 210
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=34.29 E-value=93 Score=36.36 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 006345 218 HFAKIMLLL 226 (649)
Q Consensus 218 ~~~~~~~~~ 226 (649)
.+-+++.|+
T Consensus 374 Ti~Nl~eLl 382 (527)
T PF03142_consen 374 TIHNLFELL 382 (527)
T ss_pred hHhhHhHHH
Confidence 344555443
No 211
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=34.18 E-value=2.8e+02 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHhhh
Q 006345 331 ITTMYSIYCAWTYVGWLGLLLALNL 355 (649)
Q Consensus 331 i~~~y~iy~~~~~~gwlg~~ls~Nl 355 (649)
+.++.++..--..+|++|.+++.=+
T Consensus 304 ~~vl~~~l~g~~~~G~~G~~l~~~~ 328 (341)
T TIGR02872 304 LATLISMYIGLKLFGFLGLIFGPVI 328 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667888899987544
No 212
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=34.15 E-value=88 Score=27.24 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=11.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH
Q 006345 279 VAFFIGFALALVVVALSGTILLWL 302 (649)
Q Consensus 279 ~~~~~g~~~~~~iv~~~~~~ilw~ 302 (649)
++...|...+...++++|.++||.
T Consensus 54 ~llv~G~~~~~~~~~v~G~~v~~~ 77 (82)
T PF11239_consen 54 ALLVAGVVLSQPPLGVAGFVVMVA 77 (82)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444466666555543
No 213
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=33.98 E-value=5.5e+02 Score=32.86 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-----hhhhhhcchhhhhhccchhHHHHHHHHHHHHHH
Q 006345 209 YPVALNHLGHFAKIMLLLSML-----WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIA 262 (649)
Q Consensus 209 ~p~~~~~~~~~~~~~~~~~~~-----w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~ 262 (649)
=|-+..|++.+-.++.|++.+ |.-=.+|+|....=+.... +.++|-.+|-+.|
T Consensus 10 ~p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~-~sl~~g~~Ll~lA 67 (1094)
T PRK02983 10 VPAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPD-TSLAWAFVLALLA 67 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCc-hHHHHHHHHHHHH
Confidence 366777777777777776655 3333445553332222222 5555555555554
No 214
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=33.07 E-value=1.3e+02 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 251 SVIWCSILSVIAMVGMFKFLMVLVVAALV 279 (649)
Q Consensus 251 ~~~w~~~~s~~~~~~~~~~l~~~~~~~~~ 279 (649)
++-|..+++.+|..+..-..+.+.+.+..
T Consensus 61 li~~ai~~~~~s~ll~~l~i~~lf~~~~~ 89 (130)
T PF11026_consen 61 LIRRAITLATLSALLVCLVILLLFLSALL 89 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555544444444444433
No 215
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=32.90 E-value=8.3e+02 Score=28.30 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=41.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 006345 203 RKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVI--AMVGMFKFLMVLVVAALVA 280 (649)
Q Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~--~~~~~~~~l~~~~~~~~~~ 280 (649)
...-+-||.....-.+..-.+++...+|.-..--|- .+...+..+=||+++.. ..-.+..++....++++++
T Consensus 330 ~~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G------~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a 403 (650)
T PF04632_consen 330 FPLHRDWPLALRNALRAFLAILIAGLFWIATGWPSG------ATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLA 403 (650)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChh------HHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHH
Confidence 334455777777777777777888888876644432 22334444555555543 2223344444444444444
Q ss_pred HHhhh
Q 006345 281 FFIGF 285 (649)
Q Consensus 281 ~~~g~ 285 (649)
++..+
T Consensus 404 ~~~~~ 408 (650)
T PF04632_consen 404 FLYLF 408 (650)
T ss_pred HHHHH
Confidence 44333
No 216
>PRK10794 cell wall shape-determining protein; Provisional
Probab=32.85 E-value=6.3e+02 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhccchh
Q 006345 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (649)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (649)
+..+++|++.....-...|-.+-+++|+-+
T Consensus 80 ~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 80 IICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 455666666666677778888899999765
No 217
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=32.78 E-value=1.5e+02 Score=28.95 Aligned_cols=12 Identities=0% Similarity=-0.108 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 006345 262 AMVGMFKFLMVL 273 (649)
Q Consensus 262 ~~~~~~~~l~~~ 273 (649)
..+.++|+|..+
T Consensus 76 kaa~lvYllPLl 87 (154)
T PRK10862 76 RSALLVYMTPLV 87 (154)
T ss_pred HHHHHHHHHHHH
Confidence 344455655443
No 218
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=32.61 E-value=2.2e+02 Score=29.71 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=50.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccc
Q 006345 244 MGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323 (649)
Q Consensus 244 ~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~ 323 (649)
.+...+..|.|-++.+ |.+.++-.++.-..-+.+..+-++....+|+-++--++ ++=.++.|+.
T Consensus 16 ~ld~~l~~iv~~tl~v--Sl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~----------s~PTVlvGLl---- 79 (227)
T COG4662 16 SLDPELIGIVATTLYV--SLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLL----------SMPTVLVGLL---- 79 (227)
T ss_pred hCCHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHhcCchHHHHHHHHHHhh----------cccHHHHHHH----
Confidence 3566788888888764 33333334444444455556666666666665544433 3444444533
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 006345 324 HERLALFITTMYSIYCAWTYVGWLGLLLAL 353 (649)
Q Consensus 324 h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~ 353 (649)
+|.+-+=.--+||+|+++..
T Consensus 80 ----------LylLlSr~GPlG~f~LLfT~ 99 (227)
T COG4662 80 ----------LYLLLSRSGPLGWFNLLFTQ 99 (227)
T ss_pred ----------HHHHHhccCCCccchhHhhh
Confidence 77777777788999887654
No 219
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=32.55 E-value=1.3e+02 Score=31.61 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhhcc
Q 006345 214 NHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMG 245 (649)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g 245 (649)
.+...+..+++++.++ .-|...=.-..+|.|
T Consensus 108 ~~~~~l~~~~~~~~v~-a~~lFPlWP~~~r~g 138 (224)
T PF03839_consen 108 PLMQYLIGALLLVGVI-AICLFPLWPRWMRQG 138 (224)
T ss_pred cHHHHHHHHHHHHHHH-HHHhhhcChHHHhhe
Confidence 4444554444444433 444444444444444
No 220
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.51 E-value=1e+02 Score=30.50 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhhhHHHHHHH
Q 006345 260 VIAMVGMFKFL--MVLVVAALVAFFIGFALALVVVAL 294 (649)
Q Consensus 260 ~~~~~~~~~~l--~~~~~~~~~~~~~g~~~~~~iv~~ 294 (649)
+...+-++|++ +.|.++++...++++.=.+-|+++
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~ 110 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGA 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34445566664 455566666777777766666544
No 221
>PHA03237 envelope glycoprotein M; Provisional
Probab=32.36 E-value=2.1e+02 Score=32.74 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFL 315 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~ 315 (649)
.+||++-.|-..+..+.+..++-++..+.+=.++..|+-.-+|..+=.++|..|||+-.-=+..-|--.+
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~vl~G~~lG~lia~~~l~~p~~~Y~~~f~~~v 317 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVHVLPGPALGLLIAYGMLAVTTHDYFNRFYYAV 317 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 3688899999999999999999999999999999999999999999999999999986666555554333
No 222
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.26 E-value=3.1e+02 Score=27.68 Aligned_cols=11 Identities=36% Similarity=0.193 Sum_probs=6.3
Q ss_pred HHHHHHhcCch
Q 006345 179 AIELLERQSPM 189 (649)
Q Consensus 179 ~~~~~~~~~~~ 189 (649)
--+.+|-||.=
T Consensus 35 l~~LleaQk~G 45 (206)
T PF06570_consen 35 LPHLLEAQKKG 45 (206)
T ss_pred HHHHHHHHhCC
Confidence 34566666654
No 223
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=32.21 E-value=2.8e+02 Score=27.37 Aligned_cols=23 Identities=9% Similarity=0.314 Sum_probs=10.6
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHH
Q 006345 246 TTSFFSVIWCSI-LSVIAMVGMFK 268 (649)
Q Consensus 246 ~~~~~~~~w~~~-~s~~~~~~~~~ 268 (649)
+-.+....+.++ ++++-+.++.+
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~~~ 38 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLALFI 38 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444 44444433333
No 224
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=32.15 E-value=2.4e+02 Score=30.50 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 006345 287 LALVVVALSGTILLWLYG 304 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (649)
+.++.++++++++.|+|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456777888888999987
No 225
>COG5547 Small integral membrane protein [Function unknown]
Probab=31.83 E-value=63 Score=27.39 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=15.0
Q ss_pred HHHHhhhhhhHHHHHHhhh
Q 006345 299 LLWLYGSFWTTFFVIFLGG 317 (649)
Q Consensus 299 ilw~~~~fw~t~~~~i~gg 317 (649)
||.+...||=|.+++++++
T Consensus 22 ili~t~GfwKtilviil~~ 40 (62)
T COG5547 22 ILILTFGFWKTILVIILIL 40 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567778999998888776
No 226
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=31.82 E-value=5.3e+02 Score=25.75 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHhh
Q 006345 304 GSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKS 369 (649)
Q Consensus 304 ~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~~lLq~ 369 (649)
.+||.+...+.+.=.+|++.. +++.+++..=...+-++|+.+++=+=..+++.+..++++
T Consensus 94 ~~~~~~v~~I~~~D~~fS~Ds------V~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~ 153 (176)
T TIGR03717 94 TTLWAAIKTIVIADAVMSLDN------VLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDR 153 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999864 333344443344556667777776654444466666653
No 227
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=31.75 E-value=8.2e+02 Score=27.87 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=8.1
Q ss_pred hhhhhHHHHhhhh
Q 006345 344 VGWLGLLLALNLS 356 (649)
Q Consensus 344 ~gwlg~~ls~Nla 356 (649)
-.|+|+++++=++
T Consensus 206 ~~~~g~~l~~l~~ 218 (535)
T COG1807 206 RLWLGLLLGLLPV 218 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777766655
No 228
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=31.66 E-value=7.5e+02 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhhhHH
Q 006345 271 MVLVVAALVAFFIGFALAL 289 (649)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~ 289 (649)
+..+++...++.-..+.++
T Consensus 150 ~lag~~~gLa~ltKg~~~l 168 (439)
T TIGR03663 150 FLAASALALAFTSKENAYL 168 (439)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 229
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=31.40 E-value=5.6e+02 Score=31.21 Aligned_cols=16 Identities=31% Similarity=0.332 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhCCCCC
Q 006345 459 LKREYRKKAMLVHPDKN 475 (649)
Q Consensus 459 IKKAYRKLAlk~HPDKn 475 (649)
||-.|.| |+.-.|+..
T Consensus 589 ikYFY~k-Ake~~~~v~ 604 (700)
T COG1480 589 IKYFYYK-AKEENPNVK 604 (700)
T ss_pred HHHHHHH-HHHhCCCCC
Confidence 4444444 666667743
No 230
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=31.09 E-value=2.6e+02 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006345 209 YPVALNHLGHFAKIMLLLSMLWLDCT 234 (649)
Q Consensus 209 ~p~~~~~~~~~~~~~~~~~~~w~~~~ 234 (649)
-+....-..|+|.++-+++.||+|-.
T Consensus 36 ~~~~f~v~lhlGtllAvl~~fr~~i~ 61 (259)
T PF02673_consen 36 PGLAFDVFLHLGTLLAVLIYFRKDIW 61 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999964
No 231
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.98 E-value=3.5e+02 Score=29.08 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 006345 267 FKFLMVLVVAALVAFFIGFALALVVV 292 (649)
Q Consensus 267 ~~~l~~~~~~~~~~~~~g~~~~~~iv 292 (649)
.+=|-.++..|++.+.+|+..+++++
T Consensus 228 ~~Plr~~~~~g~~~~~~~~~~~~~~~ 253 (325)
T PRK10714 228 TTPLRLLSLLGSIIAIGGFSLAVLLV 253 (325)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666655555544
No 232
>COG4758 Predicted membrane protein [Function unknown]
Probab=30.80 E-value=3.6e+02 Score=28.60 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=3.0
Q ss_pred hhcccch
Q 006345 318 LAFKFTH 324 (649)
Q Consensus 318 ~~f~~~h 324 (649)
+.+.++|
T Consensus 40 l~~~~t~ 46 (235)
T COG4758 40 LFRIYTT 46 (235)
T ss_pred HHhheeh
Confidence 3444444
No 233
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=30.71 E-value=27 Score=43.33 Aligned_cols=16 Identities=31% Similarity=0.819 Sum_probs=11.5
Q ss_pred ccCccccccccccCCCeEEEEee
Q 006345 576 RWCQECNDYHQAKDGDGWVEQSS 598 (649)
Q Consensus 576 rtC~~C~~~h~AkdG~G~Ve~~~ 598 (649)
..|+.|+ |.|++....
T Consensus 739 G~C~~C~-------G~G~~~~~~ 754 (943)
T PRK00349 739 GRCEACQ-------GDGVIKIEM 754 (943)
T ss_pred CCCCccc-------ccceEEEEe
Confidence 4588888 888777643
No 234
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.64 E-value=9.8e+02 Score=28.43 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHH-------------------------------HHHHHHH
Q 006345 213 LNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIW-------------------------------CSILSVI 261 (649)
Q Consensus 213 ~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w-------------------------------~~~~s~~ 261 (649)
.+...+..-.+++.+++|..+.-.=--- -|.|-..|++..| ..+++-+
T Consensus 360 ~r~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~ 438 (613)
T KOG0061|consen 360 LRLIQSLVTGLLLGLLYLNLGNDAKGIQ-NRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKT 438 (613)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcc-cchhhHHHHHHHHHHh---
Q 006345 262 AMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK-FTHERLALFITTMYSI--- 337 (649)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~-~~h~r~~~~i~~~y~i--- 337 (649)
....-+.++..+.-++++-+..|..+.+ --|..+++-.+..+|+..-+.++.|.++. .+.+-+++.++.++-+
T Consensus 439 l~~lP~~~i~~~if~~i~Y~m~gl~~~~---~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~ 515 (613)
T KOG0061|consen 439 LAELPFLLVLSIIFSSIVYWMVGLNPGL---SRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFG 515 (613)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHh
Q ss_pred -hhhh-----hhhhhhhHHHHhhhhhhhHHHHHHH
Q 006345 338 -YCAW-----TYVGWLGLLLALNLSFVSSDALIFF 366 (649)
Q Consensus 338 -y~~~-----~~~gwlg~~ls~NlaflS~diL~~l 366 (649)
|++. .|+.|+ -.+|.--..+..-+.+.+
T Consensus 516 G~fi~~~~ip~~~~w~-~~~S~~ry~~e~l~~n~~ 549 (613)
T KOG0061|consen 516 GFFINFDSIPKYFRWI-SYLSYFRYAFEALLINQF 549 (613)
T ss_pred hhhcCcccccHHHHHH-HHHhHHHHHHHHHHHHHh
No 235
>TIGR02210 rodA_shape rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example.
Probab=30.15 E-value=7.6e+02 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhhccchh
Q 006345 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (649)
Q Consensus 220 ~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (649)
..+++|++.....-.+.|-+.-+++|+.+
T Consensus 66 ~~~~ll~l~~~~g~~v~Ga~rWi~lg~~~ 94 (352)
T TIGR02210 66 LGLLLLVAVLLFGTTGKGAQRWIDLGFFR 94 (352)
T ss_pred HHHHHHHHHHHcCCCcCCceeeeecCCcc
Confidence 44555555554555677888888888754
No 236
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=30.07 E-value=8.2e+02 Score=27.36 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=15.0
Q ss_pred HHHhhhhhhhhhhhhHHHHhhhhh
Q 006345 334 MYSIYCAWTYVGWLGLLLALNLSF 357 (649)
Q Consensus 334 ~y~iy~~~~~~gwlg~~ls~Nlaf 357 (649)
...++.+|+|+.|+=+++.-.+++
T Consensus 248 ~v~i~LlWlyls~~I~L~Gael~~ 271 (412)
T PRK04214 248 AVPILLLWIYLLWVLVLLGASLTS 271 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777776777655543
No 237
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=30.07 E-value=3.1e+02 Score=34.52 Aligned_cols=69 Identities=10% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHH
Q 006345 296 GTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALI 364 (649)
Q Consensus 296 ~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~ 364 (649)
|-+..++|..+|...|.||=.-.+|...-....+-+..+=.|...-.++++++..|++-.-||+=-|+-
T Consensus 359 gY~~~~iwLqlWppLfAIIN~~m~~~~~~~G~~~tLs~~~~i~~~~sdia~~aGyL~msIP~LA~~ivk 427 (942)
T PRK13735 359 GYVFALMWLQSWPLLYAILNSAMTFYAKQNGAPVVLSELSQIQLKYSDLASTAGYLSMMIPPLSWGMVK 427 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666778777766654333322211211111112123334455566666677766666644433
No 238
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=30.05 E-value=2e+02 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=13.2
Q ss_pred hhhHHHHHHH-HHHHHHHHhhhhhh
Q 006345 285 FALALVVVAL-SGTILLWLYGSFWT 308 (649)
Q Consensus 285 ~~~~~~iv~~-~~~~ilw~~~~fw~ 308 (649)
++++-+++|+ +|++++|+...|-.
T Consensus 22 ~s~~~~i~G~ivg~iv~~~~~~~~~ 46 (158)
T COG1863 22 FSPANLILGFIVGAIVLLLLRRFLP 46 (158)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566666653 45555555555444
No 239
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=30.03 E-value=1e+02 Score=32.66 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=47.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006345 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIG 284 (649)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g 284 (649)
++---|++..|++-.|-++.-+++. .++|+-- +.-.+|.+-.-.-..=.++.-++.-+|
T Consensus 22 ~~~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~-----------------f~p~amlgG~lW~~gN~~~vpii~~iG 80 (254)
T PF07857_consen 22 FDTGDGFFFQWVMCSGIFLVGLVVN----LILGFPP-----------------FYPWAMLGGALWATGNILVVPIIKTIG 80 (254)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCc-----------------ceeHHHhhhhhhhcCceeehhHhhhhh
Confidence 3333588888888887655322211 1233321 122344443322223334456677889
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 006345 285 FALALVVVALSGTILLWLYGSF 306 (649)
Q Consensus 285 ~~~~~~iv~~~~~~ilw~~~~f 306 (649)
..+|++|-+.+-+++=|..+-|
T Consensus 81 Lglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 81 LGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999888887776655
No 240
>TIGR03155 sulfolob_CbsB cytochrome b558/566, subunit B. Members of this protein family are CbsB, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=29.89 E-value=7.5e+02 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=25.5
Q ss_pred hhhccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q 006345 241 FMRMGTTSFFSVIWCSILSVIA--MVGMFKFLMVLVVAALVAFFIGF 285 (649)
Q Consensus 241 ~~~~g~~~~~~~~w~~~~s~~~--~~~~~~~l~~~~~~~~~~~~~g~ 285 (649)
+.|+|..+|..-.- ++-++| ++--.|.|+-++++-++.-|+-+
T Consensus 42 L~~iGni~fY~~fv--~l~lvSills~kykaLlplti~LlISpf~~L 86 (302)
T TIGR03155 42 LLRIGNVSFYIFFI--SLLLVSLLLSNKYKALLPLTIVLIISPFLAL 86 (302)
T ss_pred HHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 46899998865432 233333 34445677777777666655443
No 241
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.80 E-value=1e+02 Score=33.90 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhH
Q 006345 263 MVGMFKFLMVLVVAALVAFFIGFALA 288 (649)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~g~~~~ 288 (649)
|..++.++++++++++++.++-.-+|
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~G 26 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQG 26 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44445455555555555555554443
No 242
>PRK09459 pspG phage shock protein G; Reviewed
Probab=29.28 E-value=2.9e+02 Score=24.58 Aligned_cols=9 Identities=11% Similarity=0.818 Sum_probs=5.0
Q ss_pred HHHHHHhhh
Q 006345 297 TILLWLYGS 305 (649)
Q Consensus 297 ~~ilw~~~~ 305 (649)
++..|+|-+
T Consensus 55 ~v~vW~~r~ 63 (76)
T PRK09459 55 VVVVWVIRA 63 (76)
T ss_pred HHHHHHHHH
Confidence 455566654
No 243
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=29.28 E-value=7.6e+02 Score=27.57 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 006345 276 AALVAFFIGFALALVVVALSGTILLWLYGSFWT 308 (649)
Q Consensus 276 ~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~ 308 (649)
+.++..++|+.+.+....++.+.++|+..++..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (439)
T TIGR03111 329 AMIFLIFLGYPVKLVVGSNLLIYILYVLSSFLN 361 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666666655554555555555444433
No 244
>COG3704 VirB6 Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion]
Probab=29.26 E-value=2.2e+02 Score=32.32 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHH
Q 006345 257 ILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYS 336 (649)
Q Consensus 257 ~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~ 336 (649)
++++..+--..-+.+.+..-.++..-+||+.++++++.++|.||-.-+=+++..++|=--- |+
T Consensus 182 ~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~i~~yi~a~I~i~vll~igPiFI~l~lF~~TR--------~~--------- 244 (406)
T COG3704 182 LIPLLGVGNGGILVAILAFWVIVISLIGYAIILYIMAFIAIVVLLGIGPLFIPLMLFDRTR--------RL--------- 244 (406)
T ss_pred HhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HH---------
Q ss_pred hhhhhhhhhhhhHHHH
Q 006345 337 IYCAWTYVGWLGLLLA 352 (649)
Q Consensus 337 iy~~~~~~gwlg~~ls 352 (649)
+=+|+|.+++
T Consensus 245 ------Fd~Wl~~lis 254 (406)
T COG3704 245 ------FDNWLGQLIS 254 (406)
T ss_pred ------HHHHHHHHHH
No 245
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=28.97 E-value=98 Score=35.09 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=42.4
Q ss_pred hhh-hcchhhhhhc--cchhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHH
Q 006345 232 DCT-IRGIDSFMRM--GTTSFFSVIWCSILSVIA----------MVGMFKFLMVLVVAALVAFFIG--FALALVVVALSG 296 (649)
Q Consensus 232 ~~~-~rg~~~~~~~--g~~~~~~~~w~~~~s~~~----------~~~~~~~l~~~~~~~~~~~~~g--~~~~~~iv~~~~ 296 (649)
||- .=|++++.|+ |.++||+++=..++.+-+ -.+.+|+++-+|+.....+... ++.-.+.|+.+|
T Consensus 68 ~c~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~G 147 (426)
T KOG2592|consen 68 DCGKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFG 147 (426)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHh
Confidence 776 7788888885 777777765444333322 1357788887777665554444 455556666666
Q ss_pred HHH
Q 006345 297 TIL 299 (649)
Q Consensus 297 ~~i 299 (649)
..+
T Consensus 148 a~~ 150 (426)
T KOG2592|consen 148 AAL 150 (426)
T ss_pred HHH
Confidence 544
No 246
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.75 E-value=51 Score=39.35 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=16.3
Q ss_pred ecccccccCceEecccccccCccceEE
Q 006345 611 VPCAYVCANSRIYNATDWYICQVNLFL 637 (649)
Q Consensus 611 ~pC~y~C~Gsgi~dkt~Ca~CqG~G~~ 637 (649)
..|.| |.-.. ....|+.|.+.-+.
T Consensus 411 l~Ch~-CG~~~--~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 411 PRCRW-CGRAA--PDWRCPRCGSDRLR 434 (665)
T ss_pred eECCC-CcCCC--cCccCCCCcCCcce
Confidence 35884 88643 36789999876543
No 247
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.68 E-value=4.4e+02 Score=25.79 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=3.2
Q ss_pred hhhhhhc
Q 006345 230 WLDCTIR 236 (649)
Q Consensus 230 w~~~~~r 236 (649)
|.|+.+=
T Consensus 125 ~~~~~~a 131 (193)
T PF06738_consen 125 WIDMIVA 131 (193)
T ss_pred HHHHHHH
Confidence 5554443
No 248
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=28.52 E-value=4.3e+02 Score=28.14 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 006345 287 LALVVVALSGTILLWLYG 304 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (649)
..++++|+.|+++-|.|.
T Consensus 116 ~~~l~l~~~~~~~~~~Yt 133 (296)
T PRK05951 116 IGAVTLALLGVFLWTCYM 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 446777888888888884
No 249
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=1.4e+02 Score=34.19 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 006345 267 FKFLMVLVVAALVA 280 (649)
Q Consensus 267 ~~~l~~~~~~~~~~ 280 (649)
.++|+.+|+-+++.
T Consensus 237 a~ILl~LG~~gLif 250 (436)
T COG1030 237 ALILLLLGFLGLIF 250 (436)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 250
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.50 E-value=40 Score=36.77 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 006345 458 ILKREYRKKAMLVHPDKN 475 (649)
Q Consensus 458 EIKKAYRKLAlk~HPDKn 475 (649)
..++..+.|...+.|+..
T Consensus 102 ~w~~~L~~Ll~~l~~~~~ 119 (309)
T PRK03564 102 HWQKLLMALIAELKPEAS 119 (309)
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 445555666666666643
No 251
>PTZ00370 STEVOR; Provisional
Probab=28.49 E-value=66 Score=34.94 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 006345 271 MVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
..-+++++.+.|..|+.+.+++-+.+||++.+|-
T Consensus 243 agtAAtaAsaaF~Pygiaalvllil~vvliilYi 276 (296)
T PTZ00370 243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYI 276 (296)
T ss_pred cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3446777788899999988888887777765553
No 252
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=28.36 E-value=7.2e+02 Score=27.99 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=35.4
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 200 YVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 279 (649)
Q Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~ 279 (649)
..+..+.-.+|++..-+... +..=.|-..=| |+|+.++=.|-= ..+++.+.-..-+.+.+|..+++
T Consensus 15 ~~k~l~~la~P~i~~~l~~~-------l~~~vD~~~vG-----~~~~~alaav~l--a~~i~~~~~~~~~gl~~g~~~li 80 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQT-------LYGLVDTFMVG-----HLGAEALAAVGL--ANPIFFLIIAIFIGLGTGTTVLV 80 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh-----cccHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566777889887654432 22222333323 233322222111 12222333334455677888888
Q ss_pred HHHhh
Q 006345 280 AFFIG 284 (649)
Q Consensus 280 ~~~~g 284 (649)
.+++|
T Consensus 81 aq~~G 85 (455)
T COG0534 81 AQAIG 85 (455)
T ss_pred HHHHc
Confidence 88887
No 253
>COG4709 Predicted membrane protein [Function unknown]
Probab=28.21 E-value=6.9e+02 Score=25.90 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHhhhhh
Q 006345 304 GSFWTTFFVIFLGGLA 319 (649)
Q Consensus 304 ~~fw~t~~~~i~gg~~ 319 (649)
.++|++++..+++|..
T Consensus 119 f~~~a~~~agil~g~~ 134 (195)
T COG4709 119 FSGWALVAAGILGGVI 134 (195)
T ss_pred HHHHHHHHHHHhcccc
Confidence 4566666666666633
No 254
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=28.17 E-value=1.7e+02 Score=26.03 Aligned_cols=54 Identities=30% Similarity=0.543 Sum_probs=35.3
Q ss_pred HHHhhhhhhHHHHHHhhhh---hcccc-hhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhh
Q 006345 300 LWLYGSFWTTFFVIFLGGL---AFKFT-HERLALFITTMYSIYCAWTYVGWLGLLLALNLSFV 358 (649)
Q Consensus 300 lw~~~~fw~t~~~~i~gg~---~f~~~-h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~Nlafl 358 (649)
.+++++.|.|.=....+.. .+.+. -.|.++.+...|.+ ...+|..++.++ +-|+
T Consensus 15 ~~yF~gLw~tvr~~~~~~~p~~~~~~S~l~R~~l~~~~f~~~----~~~~~~~lL~~l-~GF~ 72 (85)
T PF12966_consen 15 ALYFGGLWWTVRRLLASKRPALWFLLSFLLRLALVLAGFYLL----AQGGWWRLLACL-LGFL 72 (85)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHH-HHHH
Confidence 4567788888777766651 13333 36888888888877 677887666554 4444
No 255
>COG1289 Predicted membrane protein [Function unknown]
Probab=27.90 E-value=2.6e+02 Score=33.14 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhH
Q 006345 287 LALVVVALSGTILLWLYGSFWTT 309 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~fw~t 309 (649)
.|.++-.++|.+++|+...-+..
T Consensus 408 ~GTllg~~~g~~~l~~~~p~~~~ 430 (674)
T COG1289 408 LGTLLGLLLGLLVLLLLLPLIPG 430 (674)
T ss_pred HHHHHHHHHHHHHHHHhcccchh
Confidence 34444444444444444444443
No 256
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=27.86 E-value=35 Score=45.11 Aligned_cols=35 Identities=26% Similarity=0.590 Sum_probs=21.2
Q ss_pred cccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceE
Q 006345 575 ARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 622 (649)
Q Consensus 575 artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi 622 (649)
.-.|+.|+ |+|+++...+ |.+ -+..+|+ +|.|.+.
T Consensus 1607 ~GrC~~C~-------G~G~i~i~m~-fl~----dv~~~C~-~C~G~R~ 1641 (1809)
T PRK00635 1607 QGQCSDCW-------GLGYQWIDRA-FYA----LEKRPCP-TCSGFRI 1641 (1809)
T ss_pred CCCCCCCc-------cCceEEEecc-cCC----CcccCCC-CCCCcCC
Confidence 34699998 9998876543 333 2334676 5555543
No 257
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=27.86 E-value=5.3e+02 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhHHHHhhhh
Q 006345 337 IYCAWTYVGWLGLLLALNLS 356 (649)
Q Consensus 337 iy~~~~~~gwlg~~ls~Nla 356 (649)
+..+-..+||+..++.+=++
T Consensus 295 vllsil~gg~l~G~~G~ila 314 (344)
T PRK12287 295 VFLSLIFWGWLLGPVGMLLS 314 (344)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 44555566777666666665
No 258
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.83 E-value=1.2e+02 Score=28.02 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 006345 271 MVLVVAALVAFFIGFALALVVV 292 (649)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~iv 292 (649)
+++-++|+|++..||..--|=+
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777776544443
No 259
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.67 E-value=59 Score=34.38 Aligned_cols=27 Identities=19% Similarity=0.562 Sum_probs=16.9
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
.+|+.|++.=.. ..-.+..+-+|+.|+
T Consensus 246 ~pC~~Cg~~I~~--~~~~gR~t~~CP~CQ 272 (272)
T TIGR00577 246 EPCRRCGTPIEK--IKVGGRGTHFCPQCQ 272 (272)
T ss_pred CCCCCCCCeeEE--EEECCCCCEECCCCC
Confidence 579999765211 122355678888885
No 260
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=27.63 E-value=3e+02 Score=30.16 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006345 288 ALVVVALSGTILLWLYG 304 (649)
Q Consensus 288 ~~~iv~~~~~~ilw~~~ 304 (649)
.++..++.|+++.|+|.
T Consensus 126 ~il~~~~~~l~l~~~YS 142 (331)
T PRK12392 126 VIISSILAGLFVAYIYS 142 (331)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 34556678888999885
No 261
>PHA03242 envelope glycoprotein M; Provisional
Probab=27.44 E-value=2.9e+02 Score=31.69 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLG 316 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~g 316 (649)
.+||++-.|-..+..+.+..++-++..+.+=.++..|+-.-+|..+=.++|..|||+-.-=++.-+...+.
T Consensus 245 gNsF~v~~~~~v~~ai~~F~vL~ii~liv~E~vL~~Yv~vl~G~~lG~lia~~~l~~p~~rY~~~~~~~v~ 315 (428)
T PHA03242 245 ANNFHLSLPGTLVCLTAVFALLVVLLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGYYVAE 315 (428)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 47889999999999999999999999999999999999999999999999999999876666555544333
No 262
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.36 E-value=54 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=14.0
Q ss_pred cccccccCceEecccccccCccceEE
Q 006345 612 PCAYVCANSRIYNATDWYICQVNLFL 637 (649)
Q Consensus 612 pC~y~C~Gsgi~dkt~Ca~CqG~G~~ 637 (649)
.|.| |.-.. -....|+.|.+..+.
T Consensus 242 ~Ch~-Cg~~~-~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 242 RCHY-CGYQE-PIPKTCPQCGSEDLV 265 (505)
T ss_pred EcCC-CcCcC-CCCCCCCCCCCCeeE
Confidence 4774 76333 334678888775443
No 263
>PLN03211 ABC transporter G-25; Provisional
Probab=27.23 E-value=1e+03 Score=28.42 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHH------
Q 006345 194 IYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMF------ 267 (649)
Q Consensus 194 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~------ 267 (649)
+.--|.... ..+..-...+-..++.--+++-+++| .+..-.-.-|+|---|.++.|..+-++.++.-..
T Consensus 394 ~L~~R~~~~--~r~~~~~~~r~~~~i~~~ll~G~lf~---~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~ 468 (659)
T PLN03211 394 ILLQRSLKE--RKHESFNTLRVFQVIAAALLAGLMWW---HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIF 468 (659)
T ss_pred HHHHHHHHH--HhCcHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred --------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---------hhhhhhHHHHHHhhhhhccc-------c
Q 006345 268 --------KFLMVLVVAALVAFFIGFALALVVVALSGTILLWL---------YGSFWTTFFVIFLGGLAFKF-------T 323 (649)
Q Consensus 268 --------~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~---------~~~fw~t~~~~i~gg~~f~~-------~ 323 (649)
|=+.+..+|-.++- .-.-++..-+|++++-|| +..||.+.+++.+.+.++.+ +
T Consensus 469 ~rE~~~~~Y~~~~Y~la~~l~e---lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 469 VKERASGMYTLSSYFMARIVGD---LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHhhhCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred hhhHHHHHHHHHHhhhhh---------hhhhhh
Q 006345 324 HERLALFITTMYSIYCAW---------TYVGWL 347 (649)
Q Consensus 324 h~r~~~~i~~~y~iy~~~---------~~~gwl 347 (649)
-.-+..+++.++.++.+. .++.|+
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~ 578 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWI 578 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHH
No 264
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=27.06 E-value=34 Score=27.92 Aligned_cols=22 Identities=18% Similarity=0.744 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhHHHHHHhhhhhcccc
Q 006345 298 ILLWLYGSFWTTFFVIFLGGLAFKFT 323 (649)
Q Consensus 298 ~ilw~~~~fw~t~~~~i~gg~~f~~~ 323 (649)
+|-| .||+.++++++||.+-++
T Consensus 2 fiaw----ywivli~lv~~gy~~hmk 23 (54)
T PF13260_consen 2 FIAW----YWIVLIVLVVVGYFCHMK 23 (54)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556 499999999999877665
No 265
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=75 Score=37.41 Aligned_cols=86 Identities=27% Similarity=0.521 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHHhh-----hhhhHHHH-------HHhhhhhcccchhhHHH
Q 006345 272 VLVVAALVAFFIGFAL----------ALVVVALSGTILLWLYG-----SFWTTFFV-------IFLGGLAFKFTHERLAL 329 (649)
Q Consensus 272 ~~~~~~~~~~~~g~~~----------~~~iv~~~~~~ilw~~~-----~fw~t~~~-------~i~gg~~f~~~h~r~~~ 329 (649)
.|.+|+.++.-.||+- |+-|.++.-.+-||.=+ .||.++-- ---|||.|..|.--+-|
T Consensus 147 GL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHV 226 (751)
T KOG2292|consen 147 GLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHV 226 (751)
T ss_pred cHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHH
Confidence 3556666666666653 34555555555666532 35554422 22499999999755545
Q ss_pred HHHHHHHhhhhhhhhh-----hhhHHHHhhhhh
Q 006345 330 FITTMYSIYCAWTYVG-----WLGLLLALNLSF 357 (649)
Q Consensus 330 ~i~~~y~iy~~~~~~g-----wlg~~ls~Nlaf 357 (649)
|+..+..=|+-|.|++ =+|.+||+-..|
T Consensus 227 lvlllmGRyS~rlyiaY~t~y~lGtllsmqipf 259 (751)
T KOG2292|consen 227 LVLLLMGRYSSRLYIAYTTFYCLGTLLSMQIPF 259 (751)
T ss_pred HHHHHhcccccceeeehhhHHHHHHHHHccCcc
Confidence 5544444444444443 367888877764
No 266
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=26.57 E-value=8.1e+02 Score=26.15 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhh-hccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006345 219 FAKIMLLLSMLWLDCTIRGIDSFM-RMGTTSFFSVIWCSIL-SVIAMVGMFKFLMVLVVAALVAF 281 (649)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~~-~~g~~~~~~~~w~~~~-s~~~~~~~~~~l~~~~~~~~~~~ 281 (649)
..-++.++...|+-|+.+==+.+= -+.--+.|-+-=++.+ -++++.-...+|+++++.++|+.
T Consensus 88 ~~~~vf~vt~l~l~c~~~~r~k~P~N~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~ 152 (237)
T KOG2322|consen 88 ALIVVFIVTYLSLACCEGLRRKSPVNLILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVVL 152 (237)
T ss_pred HHHHHHHHHHHHHHccCcccccCcHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhee
Confidence 344566777788888865332221 1111111211111111 12344445678999999888875
No 267
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=26.51 E-value=2.5e+02 Score=28.40 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 006345 268 KFLMVLVVAALVAFFIGF 285 (649)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~ 285 (649)
++++++|+...++-|+|+
T Consensus 54 ~ili~~G~v~~~v~flGc 71 (237)
T KOG3882|consen 54 YILIAVGGVVFLVGFLGC 71 (237)
T ss_pred hhhhhhhHHHHHHHHhhh
Confidence 344444444444444444
No 268
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=26.33 E-value=3.9e+02 Score=23.04 Aligned_cols=40 Identities=23% Similarity=0.628 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006345 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALS 295 (649)
Q Consensus 249 ~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~ 295 (649)
||-.+|=- .-++-+++.++.-...++.++++.|++.+++.
T Consensus 6 ~fk~iW~~-------~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~ 45 (63)
T PF06341_consen 6 FFKTIWKY-------FDIILFILAMIFINITAFLINQIAGLISIGIT 45 (63)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777752 22344566677777778889999999888773
No 269
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=26.27 E-value=1.2e+03 Score=27.90 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHH
Q 006345 329 LFITTMYSIYCAWTYVGWLGLLLA 352 (649)
Q Consensus 329 ~~i~~~y~iy~~~~~~gwlg~~ls 352 (649)
.+...+|.+|.+-+.+-=|-+++|
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIA 609 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIA 609 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777766444443333
No 270
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.13 E-value=36 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.817 Sum_probs=15.1
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
+.|+.|+-.. ....+.|+.|+
T Consensus 3 ~~Cp~Cg~~~--------~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGAEI--------DPDAKFCPNCG 23 (26)
T ss_pred CCCcccCCcC--------CcccccChhhC
Confidence 5688887642 45578899986
No 271
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=26.13 E-value=9.8e+02 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=23.1
Q ss_pred HHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006345 190 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSML 229 (649)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (649)
++..+.++-......+=..=|-|.+|+++.+-|+.+.++.
T Consensus 16 ~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~ 55 (459)
T PF10337_consen 16 LKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVI 55 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHH
Confidence 3334444444444444455577777777777777666554
No 272
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=26.10 E-value=4.3e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHH
Q 006345 246 TTSFFSVIWCSILSVI 261 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~ 261 (649)
.|.||..+|+..=-+-
T Consensus 41 ~Af~f~~~w~l~r~mw 56 (108)
T PF10947_consen 41 WAFFFGPLWLLYRKMW 56 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666554443
No 273
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=26.08 E-value=8.9e+02 Score=28.69 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 006345 456 VSILKREYRKKAM 468 (649)
Q Consensus 456 ~~EIKKAYRKLAl 468 (649)
.+.+=.-+.+...
T Consensus 357 De~LL~~~~~~l~ 369 (555)
T COG2194 357 DEALLPDLDQVLA 369 (555)
T ss_pred hHHHhHhHHHHhh
Confidence 3344444444433
No 274
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=2.2e+02 Score=32.91 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006345 218 HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGT 297 (649)
Q Consensus 218 ~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~ 297 (649)
.|-.+.-|.+.+=+.-.-=|+.-.++.||-+.=.|+|-..+.+.- .+.=-++++.|+-+.++..... ..+
T Consensus 21 ~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P---------~~~Ei~l~~vi~~~~~~~~f~~-~t~ 90 (497)
T COG5265 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILP---------TLVEISLVAVILWRVYGWWFAL-TTL 90 (497)
T ss_pred HHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhH---------HHHHHHHHHHHHHhhcccHHHH-HHH
Confidence 344455567777788888899999999999998999987766532 2222223333444444444432 246
Q ss_pred HHHHHhhhhhhHHH
Q 006345 298 ILLWLYGSFWTTFF 311 (649)
Q Consensus 298 ~ilw~~~~fw~t~~ 311 (649)
+.+|+|..||+...
T Consensus 91 vtv~lY~~ftv~~s 104 (497)
T COG5265 91 VTVILYLLFTVIVS 104 (497)
T ss_pred HHHHHHHHhheeeh
Confidence 78899999997654
No 275
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=25.83 E-value=7.7e+02 Score=25.65 Aligned_cols=34 Identities=29% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHh----------------------hhhhhHHHHHHhhhhhcccch
Q 006345 291 VVALSGTILLWLY----------------------GSFWTTFFVIFLGGLAFKFTH 324 (649)
Q Consensus 291 iv~~~~~~ilw~~----------------------~~fw~t~~~~i~gg~~f~~~h 324 (649)
+.-++|++++|.. .+||.+...+.+.=.+|++.+
T Consensus 58 l~~iGG~~Ll~~~~k~l~~~~~~~~~~~~~~~~~~~~f~~av~~I~~~DlvFSlDS 113 (215)
T TIGR03716 58 IKAIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWRTVLKVELMDIAFSVDS 113 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHHHhhh
Confidence 4555677777764 358888888888888888754
No 276
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=25.79 E-value=5.5e+02 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 006345 287 LALVVVALSGTILLWLYG 304 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (649)
+.++++|++|+++-|+|.
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 456788899999999886
No 277
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.66 E-value=3.6e+02 Score=25.56 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=17.4
Q ss_pred hhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhh
Q 006345 305 SFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCA 340 (649)
Q Consensus 305 ~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~ 340 (649)
.+|+-++ ++|++ -+|+.-|..|+||.+
T Consensus 83 ~~f~~~f---~~Gl~------tyVl~Wtf~Y~lv~~ 109 (110)
T KOG4455|consen 83 NLFTESF---LGGLT------TYVLAWTFFYGLVHV 109 (110)
T ss_pred HHHHHHH---hchHH------HHHHHHHHHhhhhcc
Confidence 3444443 56655 677888888887754
No 278
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.64 E-value=81 Score=34.25 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 006345 272 VLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
.-+++++.+.|..|+.+.+++-+.+||++.+|-
T Consensus 248 gtAAtaA~aaF~Pcgiaalvllil~vvliiLYi 280 (295)
T TIGR01478 248 ERAASAATSTFLPYGIAALVLIILTVVLIILYI 280 (295)
T ss_pred chHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999888888777777765553
No 279
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=1.7e+02 Score=26.06 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKK 487 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~ 487 (649)
|++.-+++|++| .++.+||+.|-++..+|+.--..|+ ....++|..
T Consensus 2 CRNIk~LfnfdP--PAT~~EvrdAAlQfVRKlSGtT~PS-~~n~~AFe~ 47 (88)
T COG5552 2 CRNIKELFNFDP--PATPVEVRDAALQFVRKLSGTTHPS-AANAEAFEA 47 (88)
T ss_pred ccchHHHhCCCC--CCCcHHHHHHHHHHHHHhcCCCCcc-hhhHHHHHH
Confidence 345567889999 7999999999988888875444432 223345543
No 280
>PLN00012 chlorophyll synthetase; Provisional
Probab=25.40 E-value=3.9e+02 Score=29.87 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hh--hhhhHHHHHHHHHHHHHHHhh----hhhhHHHH-HHhhhhhcccchhhHHH
Q 006345 258 LSVIAMVGMFKFLMVLVVAALVAF-FI--GFALALVVVALSGTILLWLYG----SFWTTFFV-IFLGGLAFKFTHERLAL 329 (649)
Q Consensus 258 ~s~~~~~~~~~~l~~~~~~~~~~~-~~--g~~~~~~iv~~~~~~ilw~~~----~fw~t~~~-~i~gg~~f~~~h~r~~~ 329 (649)
+|.-.+..+..+++.++++..+.. ++ ...+-+++++++|+++.|+|. .+=-.+.+ -++.|..|.
T Consensus 165 Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~-------- 236 (375)
T PLN00012 165 ISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYI-------- 236 (375)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHH--------
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHhhhhccCCCC
Q 006345 330 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTD 377 (649)
Q Consensus 330 ~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~~lLq~~~~e~~~s 377 (649)
..-.++.|.+.-.+-|..+++++=..++ .+..++.+...+...+
T Consensus 237 -~lp~~~g~a~~g~~s~~~illal~~~l~---~lai~ivnd~~Die~D 280 (375)
T PLN00012 237 -SLPWWAGQALFGTLTPDVVVLTLLYSIA---GLGIAIVNDFKSIEGD 280 (375)
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHhhhcchhhH
No 281
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=25.27 E-value=81 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLV 274 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~ 274 (649)
+..|+++.|..++-+...++.+.+|.++|
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I~lL~svG 93 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAIGLLFSVG 93 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45688888888888777777777776665
No 282
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=25.06 E-value=42 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=17.2
Q ss_pred ccccccccCccceeeecc--CccccccCcccc
Q 006345 553 RIACKKCNNFHVWIETKK--SKASARWCQECN 582 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~k--s~s~artC~~C~ 582 (649)
.+.||.|+.... +...+ .+.....|+.|+
T Consensus 2 ~i~CP~C~~~f~-v~~~~l~~~~~~vrC~~C~ 32 (37)
T PF13719_consen 2 IITCPNCQTRFR-VPDDKLPAGGRKVRCPKCG 32 (37)
T ss_pred EEECCCCCceEE-cCHHHcccCCcEEECCCCC
Confidence 367888888742 21111 334566788886
No 283
>PRK10649 hypothetical protein; Provisional
Probab=24.84 E-value=4.3e+02 Score=31.11 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHh-hhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhhH
Q 006345 223 MLLLSMLW-LDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAF-------------FIGFALA 288 (649)
Q Consensus 223 ~~~~~~~w-~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~-------------~~g~~~~ 288 (649)
.+|++.+| .-+.+ |---+|+=.+.+.+|+|++++.-+.-....-..+.-++...|.. +..+...
T Consensus 49 ~~~~~~~~~~~~~l--~p~~~~~~~~~~~~vl~~~~l~~~~Y~~~yg~~~~~~mi~~v~eTn~~Ea~e~ls~~~~~~~~l 126 (577)
T PRK10649 49 ALLFSSLWLIPVFL--FPRRIRIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYFSLKIVL 126 (577)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhh--------hhHHHHHHhhhh-------------hcccchhhHHHHHHHHHHhhhhhhh
Q 006345 289 LVVVALSGTILLWLYGSF--------WTTFFVIFLGGL-------------AFKFTHERLALFITTMYSIYCAWTY 343 (649)
Q Consensus 289 ~~iv~~~~~~ilw~~~~f--------w~t~~~~i~gg~-------------~f~~~h~r~~~~i~~~y~iy~~~~~ 343 (649)
+.++.+..++++|.-..- ++.++++++++. .|.-+|..+.-.++-...++.+..+
T Consensus 127 ~~~l~~l~~~~~~~r~~~~~~~~~~~~~~~~l~l~~~~~~~~~k~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~ 202 (577)
T PRK10649 127 IALAYTAVAVLLWTRLRPVYIPWPWRYVVSFALLYGLILHPIAMNTFIKHKPFEKTLDKLASRMEPAAPWQFLTGY 202 (577)
T ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHhccchhHHHHHHHH
No 284
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.74 E-value=3.4e+02 Score=28.72 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 006345 209 YPVALNHLGHFAKIMLLLSMLW 230 (649)
Q Consensus 209 ~p~~~~~~~~~~~~~~~~~~~w 230 (649)
+|-=......+|.++++..++|
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la 29 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLA 29 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555544
No 285
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=24.74 E-value=8e+02 Score=25.71 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhhcchhhhh
Q 006345 220 AKIMLLLSMLWLDCTIRGIDSFM 242 (649)
Q Consensus 220 ~~~~~~~~~~w~~~~~rg~~~~~ 242 (649)
.-++......|-|..=|++|...
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~ 66 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKM 66 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCC
Confidence 33455555677777668999864
No 286
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=24.69 E-value=7.4e+02 Score=27.23 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHh------hhhhhhhhhhhHHHHhhhhhhhHHHHH
Q 006345 298 ILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSI------YCAWTYVGWLGLLLALNLSFVSSDALI 364 (649)
Q Consensus 298 ~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~i------y~~~~~~gwlg~~ls~NlaflS~diL~ 364 (649)
++.|+...+++.++..++.+.....++.+..+.+..+..+ |..-...|..|..++.=++.+..-++.
T Consensus 349 ~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~ 421 (502)
T TIGR01695 349 ILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLL 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666667777787755544433321 222223466666666666555443443
No 287
>PLN00136 silicon transporter; Provisional
Probab=24.56 E-value=3.8e+02 Score=30.81 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHhhh----------hhhHHHHHHhhhh--hcccchhhHHHHHHHHHHhh------hhhhhhhhh
Q 006345 286 ALALVVVALSGTILLWLYGS----------FWTTFFVIFLGGL--AFKFTHERLALFITTMYSIY------CAWTYVGWL 347 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~----------fw~t~~~~i~gg~--~f~~~h~r~~~~i~~~y~iy------~~~~~~gwl 347 (649)
...+-++++.|.+++.+.+. -|-|.+ ++.|+. ...+.+..+.-++.....-+ -.-..++|+
T Consensus 300 g~p~~~iAl~~a~~lll~~~~~~~~~l~~v~W~~Ll-ff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~~~~~~~~~~~ 378 (482)
T PLN00136 300 GLNMSWTAITTAIALVVVDFRDAEPCLDTVSYSLLV-FFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVI 378 (482)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHhCCCcHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34566677777777766653 143322 222221 12234444444444332211 133344555
Q ss_pred hHHHHhhhhhhhHHHHHHHHhhhhc
Q 006345 348 GLLLALNLSFVSSDALIFFLKSKVN 372 (649)
Q Consensus 348 g~~ls~NlaflS~diL~~lLq~~~~ 372 (649)
..++| +|+||-...-+...-+.
T Consensus 379 s~~lS---~~isNvp~~~~m~p~v~ 400 (482)
T PLN00136 379 ILLLS---NLASNVPTVLLMGDEVA 400 (482)
T ss_pred HHHHH---HHhccHHHHHHHHHHHH
Confidence 55554 67777766666664444
No 288
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=24.52 E-value=4.2e+02 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=19.2
Q ss_pred hhhhhhhhhHHHHhhh--hhhhHHHHHHHHhh
Q 006345 340 AWTYVGWLGLLLALNL--SFVSSDALIFFLKS 369 (649)
Q Consensus 340 ~~~~~gwlg~~ls~Nl--aflS~diL~~lLq~ 369 (649)
.|.+.||+|.+..+=- .++.+-+.+..+++
T Consensus 125 ~R~~eG~vGi~s~iWa~l~~l~~~~~D~~v~~ 156 (232)
T PF10329_consen 125 TRHEEGWVGIASVIWAFLSSLWGILADRYVEW 156 (232)
T ss_pred HHhHhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4668899998765432 35556666666653
No 289
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.38 E-value=47 Score=42.30 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=31.0
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec---ccccc
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN---ATDWY 629 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d---kt~Ca 629 (649)
...|++|+... ....|+.|+ .. .. + ...|+ .|...-..+ ...|+
T Consensus 667 ~rkCPkCG~~t----------~~~fCP~CG-------s~----te--~---------vy~CP-sCGaev~~des~a~~CP 713 (1337)
T PRK14714 667 RRRCPSCGTET----------YENRCPDCG-------TH----TE--P---------VYVCP-DCGAEVPPDESGRVECP 713 (1337)
T ss_pred EEECCCCCCcc----------ccccCcccC-------Cc----CC--C---------ceeCc-cCCCccCCCccccccCC
Confidence 46899998752 113899997 11 10 0 11588 788543222 55899
Q ss_pred cCccceEE
Q 006345 630 ICQVNLFL 637 (649)
Q Consensus 630 ~CqG~G~~ 637 (649)
.|...-.=
T Consensus 714 ~CGtplv~ 721 (1337)
T PRK14714 714 RCDVELTP 721 (1337)
T ss_pred CCCCcccc
Confidence 99865443
No 290
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=24.16 E-value=5.7e+02 Score=26.86 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 006345 287 LALVVVALSGTILLWLYGS 305 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (649)
+-++++|++++++.|.|..
T Consensus 113 ~~~~~~~~~~~~~~~~Ys~ 131 (293)
T PRK06080 113 WWLLLLGLLCIAAAILYTG 131 (293)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 3457778888888899864
No 291
>KOG4665 consensus ATP synthase F0 subunit 6 and related proteins [Energy production and conversion]
Probab=24.01 E-value=9.2e+02 Score=25.92 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhh--------hhhccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006345 214 NHLGHFAKIMLLLSMLWLDCTIRGIDS--------FMRMGTTSFFSVIWCS--ILSVIAMVGMFKFLMVLVVAALVAFFI 283 (649)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~~~--------~~~~g~~~~~~~~w~~--~~s~~~~~~~~~~l~~~~~~~~~~~~~ 283 (649)
.=+.|++-.+.+....|+.-+|-|++| |+.-||..-+.-+=.+ +.|.++=...+ -+-+++--.++|.+
T Consensus 115 ~~t~~l~~tlala~~iwlg~~i~gl~sh~~~~fa~f~p~Gtp~pL~p~lvlIE~iS~~~r~lsL--~vRL~aNi~aGHLl 192 (252)
T KOG4665|consen 115 TPTSHLGFTLALAISIWLGTTILGLQSHGLHFFAYFLPAGTPLPLIPFLVLIETISYLIRPLSL--GVRLTANILAGHLL 192 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHcchhheeEECCCCCccchhHHHHHHHHHHHHhcchhh--HhHhhhhHHHHHHH
Confidence 345688888889999999999999999 4555665443322222 22222221111 12233344455555
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhh
Q 006345 284 GFALALVVVALSGTILLWLYGSFW 307 (649)
Q Consensus 284 g~~~~~~iv~~~~~~ilw~~~~fw 307 (649)
+-..|=..+..+++-..|+...|-
T Consensus 193 ~~iL~~~~~~~m~~nli~l~i~~~ 216 (252)
T KOG4665|consen 193 MNILGGLLFTMMLMNLIFLVIGAI 216 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544443
No 292
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=23.94 E-value=7.5e+02 Score=24.90 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhh
Q 006345 296 GTILLWLYGSFWTTFFVIFLGGLA 319 (649)
Q Consensus 296 ~~~ilw~~~~fw~t~~~~i~gg~~ 319 (649)
.++++|.++.-|+...+..+.|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~ig~~ 149 (200)
T PF13398_consen 126 LLIALWFFAPPWILRFILLFIGVF 149 (200)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHH
Confidence 345566666666666665555543
No 293
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=23.61 E-value=1.8e+02 Score=33.05 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=17.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhh
Q 006345 280 AFFIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 280 ~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
...++.|...|+.++.++++|..+.
T Consensus 182 ~~Li~~T~~~y~~si~~~v~~y~~f 206 (429)
T PF03348_consen 182 IALIGVTLLFYAASIAGIVLMYVFF 206 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677778888887777766553
No 294
>PRK14397 membrane protein; Provisional
Probab=23.56 E-value=3.3e+02 Score=28.55 Aligned_cols=108 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhh----HHHHHHHHHHhhhhhhhhhhhh
Q 006345 274 VVAALVAFFIGFAL-ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER----LALFITTMYSIYCAWTYVGWLG 348 (649)
Q Consensus 274 ~~~~~~~~~~g~~~-~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r----~~~~i~~~y~iy~~~~~~gwlg 348 (649)
|+|..++.++...| ..++..+.-++++++..+....+++..+.-..+++-... ++.++..+..+|=++.
T Consensus 105 GVAt~~Gvll~l~p~~~li~~~vf~~v~~itr~vSL~Si~a~~~~pi~~~~~~~~~~~~~~~~~a~lvi~rHr~------ 178 (222)
T PRK14397 105 AVATTIGVFIPLAFWQLLLSGILCLLVIWRSGFVSLGSLTLVTALPVMLLITGKWKLIPLALVVMALVYWSHRE------ 178 (222)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhhccCCCCCCCccCCCCCCCCCC
Q 006345 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSF 392 (649)
Q Consensus 349 ~~ls~NlaflS~diL~~lLq~~~~e~~~ss~~eq~~~ss~~~~~ 392 (649)
|+.-+-+--=+.+-++.-+..+.+.++...+.+.+..+.
T Consensus 179 -----NI~RL~~G~E~k~~~k~~~~~~~~~~~~~~~~~~~~~~~ 217 (222)
T PRK14397 179 -----NIGRLARGEEKPWQKKHHDAAQGTAAGAAPTANADAADA 217 (222)
T ss_pred -----HHHHHHcCCcchhhcccCccccccCCCCCCcccCCHHHc
No 295
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.55 E-value=60 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=15.2
Q ss_pred ccccccccCccceeeeccCccccccCcccc
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
...|+.|++. .|.........|+.|+
T Consensus 222 ~~~C~~C~~~----l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 222 ILCCPNCDVS----LTYHKKEGKLRCHYCG 247 (505)
T ss_pred ccCCCCCCCc----eEEecCCCeEEcCCCc
Confidence 4567777764 2333444566777775
No 296
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=23.52 E-value=3.2e+02 Score=30.19 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHH
Q 006345 330 FITTMYSIYCAWTYVGWLGLLLA 352 (649)
Q Consensus 330 ~i~~~y~iy~~~~~~gwlg~~ls 352 (649)
.+.+++++..-.+|.||+|+.+.
T Consensus 201 ~~l~~~al~lT~SRga~l~~~~~ 223 (402)
T TIGR03097 201 MLLTVISVLGSYSRGALLALVAM 223 (402)
T ss_pred HHHHHHHHHHccchHHHHHHHHH
Confidence 44556677888888888887654
No 297
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=23.44 E-value=1.4e+02 Score=27.98 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=30.6
Q ss_pred hhccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 006345 242 MRMGTTSFF--SVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (649)
Q Consensus 242 ~~~g~~~~~--~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (649)
+=.|++.+| +-.|=.||.+.-.+-+.-+.+.+-.-+=+ .+.-..-++.++.+|+++.+|+.|
T Consensus 44 l~YG~nTLfFfLYTWPFFLALmPvsVl~Gi~l~~ll~g~l-~~s~~~t~l~V~~lFwllF~~L~G 107 (107)
T PF12084_consen 44 LVYGSNTLFFFLYTWPFFLALMPVSVLIGIALSSLLRGKL-LWSLLATGLAVGCLFWLLFSWLSG 107 (107)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-eeehhhHHHHHHHHHHHHHHHHcC
Confidence 445665544 45799988875433222221111111101 111123356677788888877654
No 298
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=2.8e+02 Score=28.43 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhh
Q 006345 296 GTILLWLYGSFWT 308 (649)
Q Consensus 296 ~~~ilw~~~~fw~ 308 (649)
+++..|+|-+|.-
T Consensus 97 ~lv~~w~~LY~~r 109 (187)
T KOG3142|consen 97 ALVAAWLFLYFLR 109 (187)
T ss_pred HHHHHHHheeeec
Confidence 4455555555543
No 299
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=23.32 E-value=2.1e+02 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 006345 208 VYPVALNHLGHFAKIMLL 225 (649)
Q Consensus 208 ~~p~~~~~~~~~~~~~~~ 225 (649)
+=....+|+.+++.++|+
T Consensus 177 ~~n~~~tW~lR~~G~llm 194 (248)
T PF07787_consen 177 SANNTLTWILRFIGWLLM 194 (248)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334556777776665554
No 300
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=23.29 E-value=1.6e+02 Score=22.44 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHH
Q 006345 287 LALVVVALSGTILLW 301 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw 301 (649)
.++.+|++.+++||-
T Consensus 7 Gal~vv~iLt~~ILv 21 (34)
T PF08113_consen 7 GALGVVMILTAFILV 21 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHH
Confidence 345566666666653
No 301
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=23.28 E-value=1.8e+02 Score=29.32 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHH
Q 006345 254 WCSILSVIAMVGMFKFLMVLVVAALVAFFIG--FALALVVVALSGTIL 299 (649)
Q Consensus 254 w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g--~~~~~~iv~~~~~~i 299 (649)
|..-+-+ |+.-||..+++++-|-++.- ...++.+.++.++++
T Consensus 110 W~~s~~l----Gi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~ 153 (175)
T PF07856_consen 110 WRFSTVL----GIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVL 153 (175)
T ss_pred HHHHHHH----HHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHH
Confidence 7665555 99999999999998888877 667777766655443
No 302
>PLN03140 ABC transporter G family member; Provisional
Probab=23.24 E-value=1.1e+03 Score=31.37 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q 006345 217 GHFAKIMLLLSMLWL 231 (649)
Q Consensus 217 ~~~~~~~~~~~~~w~ 231 (649)
.++.--+++-+++|.
T Consensus 1219 ~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1219 FTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHHHHHHhhC
Confidence 333333444555564
No 303
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=23.22 E-value=6.1e+02 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhh
Q 006345 280 AFFIGFALALVVVALSGTILLWLYGS 305 (649)
Q Consensus 280 ~~~~g~~~~~~iv~~~~~~ilw~~~~ 305 (649)
...-|+-..+.|++++++|.+-++..
T Consensus 210 ~sW~g~~~~~~i~l~~~~~~~v~~~~ 235 (773)
T COG1287 210 LAWGGYYYILAILLLYALVLLVLAFL 235 (773)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666544443
No 304
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=23.19 E-value=7.7e+02 Score=24.73 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 006345 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSF 306 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f 306 (649)
.+-....++.+.+++...+.+.--.+..++..++.-++++.-..=+|.-+.++-|+...|
T Consensus 109 v~~~~l~l~~~~~~l~~~~a~~qH~a~~A~~~~~~~~s~g~v~~~~G~~a~~l~W~aF~f 168 (182)
T PF12351_consen 109 VSKVALGLSFLSVLLWLVGAMWQHVASVASSTMIEDASMGIVKVKVGKAAMVLGWFAFAF 168 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEeccchhHHhHHHHHHHH
Confidence 345556667777777788888888888888888888877775555777788888865555
No 305
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=23.17 E-value=9.5e+02 Score=25.79 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=55.5
Q ss_pred hhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhh---h---hHH
Q 006345 233 CTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMF-----------------KFLMVLVVAALVAFFIGF---A---LAL 289 (649)
Q Consensus 233 ~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~-----------------~~l~~~~~~~~~~~~~g~---~---~~~ 289 (649)
+.-+--+..-.++.+.++.++..+.++........ .++++..+++..++..-. + ..+
T Consensus 163 ~~~~~~~~~~p~~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (326)
T PF14351_consen 163 RAPRRSALLEPLAYGLLLSLLGILLVSIFNSLFMFLTPQFFQSSWFYALWILYLLLIIALLLFYVLWRRRQSLTSPLWIV 242 (326)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44555666667777777777777777666655555 222222222222222111 1 122
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhh
Q 006345 290 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (649)
Q Consensus 290 ~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg 348 (649)
..+++..+...|++..--..++++++.|+ .+++|...-+..+..+|.+..|-=+|+
T Consensus 243 ~~~~l~ll~~~~~~~pgi~~~lllLll~~---~~~~~~l~~l~~~~ll~~l~~YYY~L~ 298 (326)
T PF14351_consen 243 VALALALLALLAFPAPGIGAALLLLLLAF---YRGSRWLFGLGVLALLYYLSWYYYQLQ 298 (326)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 22233223333444333444444454442 245566666666666666655544443
No 306
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.01 E-value=1.7e+03 Score=28.75 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHhcCch-HHHHHhhhhhhHhhhhhhhhHHHHHHH-----------HHHHHHHHHHHHHhhhhhhcchhh--hhhccch
Q 006345 182 LLERQSPM-LMTNIYNAHDYVSRKVQQVYPVALNHL-----------GHFAKIMLLLSMLWLDCTIRGIDS--FMRMGTT 247 (649)
Q Consensus 182 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------~~~~~~~~~~~~~w~~~~~rg~~~--~~~~g~~ 247 (649)
||-+++|+ +-.-..-..+.....-.-.|.-+..++ .-++-|++..+..|.-=.++.+-. --|.|..
T Consensus 433 Wv~s~~Pi~l~w~~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~l~~~lll~~~~~~~r~~~~~~l~~~~~~vg~v 512 (1109)
T PRK10929 433 WVADVSPISLSYPLEIAQDLRRLLSLDTFSQLGKASVMMLTSKETLLPLFGALLLVGFSISSRRHYHAFLERSSSRVGKV 512 (1109)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh--------------
Q 006345 248 -------SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSF-------------- 306 (649)
Q Consensus 248 -------~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f-------------- 306 (649)
.+..++|..++++ ...++.+++..++-.+...++....|..+.+ -+.++|+|...
T Consensus 513 ~~D~~~~T~~al~~t~l~al--P~pl~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~w~~~~~~~~~~~~Gl~~~HF 588 (1109)
T PRK10929 513 TQDHFSLTLRTVFWSILVAS--PLPVLWAALGYGLQNAWPYPLAVAIGDGVTA--TVPLLWVFMICATFARPNGLFIAHF 588 (1109)
T ss_pred ccccccccHHHHHHHHHHHh--HHHHHHHHHHHHhhhhhhhhhHhhccHHHHH--HHHHHHHHHHHHHHcCCCCeeHHhc
Q ss_pred ------------------hhHHHHHHhhhhhcccch-------hhHHHHHHHHHHhhhhh
Q 006345 307 ------------------WTTFFVIFLGGLAFKFTH-------ERLALFITTMYSIYCAW 341 (649)
Q Consensus 307 ------------------w~t~~~~i~gg~~f~~~h-------~r~~~~i~~~y~iy~~~ 341 (649)
|+..-++++.......+- .|+++++.++...+.++
T Consensus 589 ~w~~~~v~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~~ 648 (1109)
T PRK10929 589 GWPRERVARAMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVTL 648 (1109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHHH
No 307
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.90 E-value=1.2e+02 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHH
Q 006345 269 FLMVLVVAALVAFFIGF-------ALALVVVALSGTIL 299 (649)
Q Consensus 269 ~l~~~~~~~~~~~~~g~-------~~~~~iv~~~~~~i 299 (649)
.|+++|+.-+|++.... -|.+-+||+.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 46777776666655443 35566777777665
No 308
>PRK10774 cell division protein FtsW; Provisional
Probab=22.89 E-value=8.8e+02 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhhccchh
Q 006345 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (649)
Q Consensus 220 ~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (649)
..+++|++..=..-.+-|-++-+++|+.+
T Consensus 107 ~~l~llllv~~~g~~~~Ga~rWi~iG~~~ 135 (404)
T PRK10774 107 GSIIMLLIVLVVGSSVNGASRWIALGPLR 135 (404)
T ss_pred HHHHHHHHHHHcCCccCCcceEEEeCCcc
Confidence 34444444433455667888888998755
No 309
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.85 E-value=1.3e+03 Score=27.36 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=19.8
Q ss_pred HhhhhhhhhHHHHHHHH---HHHH-HHHHHHHHhhhhh
Q 006345 201 VSRKVQQVYPVALNHLG---HFAK-IMLLLSMLWLDCT 234 (649)
Q Consensus 201 ~~~~~~~~~p~~~~~~~---~~~~-~~~~~~~~w~~~~ 234 (649)
+.-|+.+|+|...+-++ ++++ +|-+..++|.=|-
T Consensus 178 ~~~K~pH~n~~alr~l~~~~q~~rrff~~~~~v~~l~~ 215 (611)
T KOG4623|consen 178 LNYKVPHHNPKALRVLWLLRQFGRRFFYLQSIVWHLYH 215 (611)
T ss_pred hhhcCccccHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 44578888887766544 2333 3455556665553
No 310
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=22.82 E-value=7.9e+02 Score=27.94 Aligned_cols=14 Identities=14% Similarity=0.499 Sum_probs=7.0
Q ss_pred ccchhHHHHHHHHH
Q 006345 244 MGTTSFFSVIWCSI 257 (649)
Q Consensus 244 ~g~~~~~~~~w~~~ 257 (649)
+|..++..||=+.+
T Consensus 37 ~~~~~~WavlTVvv 50 (406)
T PF11744_consen 37 FGQNAMWAVLTVVV 50 (406)
T ss_pred hhhcchHHHhhhHh
Confidence 45665555544433
No 311
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.80 E-value=3e+02 Score=31.53 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhHHHHH
Q 006345 296 GTILLWLYGSFWTTFFVI 313 (649)
Q Consensus 296 ~~~ilw~~~~fw~t~~~~ 313 (649)
||++=|+.+++|+++=-+
T Consensus 250 allLYWv~snlwtl~Qq~ 267 (429)
T PRK00247 250 AIALYWVANNLWTLIQNI 267 (429)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 678888888888876533
No 312
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=22.72 E-value=3.1e+02 Score=35.25 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=18.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhh-hhhhHHHHHHhhhh
Q 006345 282 FIGFALALVVVALSGTILLWLYG-SFWTTFFVIFLGGL 318 (649)
Q Consensus 282 ~~g~~~~~~iv~~~~~~ilw~~~-~fw~t~~~~i~gg~ 318 (649)
.+..+..+.+++++|++-+|=.. +.-...-|+|..|+
T Consensus 1078 iv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi 1115 (1204)
T TIGR00917 1078 NVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI 1115 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh
Confidence 33445566666666666655332 23334445555554
No 313
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=22.69 E-value=5.8e+02 Score=33.69 Aligned_cols=125 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhh---hhcchhhhhhccchhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhh
Q 006345 221 KIMLLLSMLWLDC---TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGM------------FKFLMVLVVAALVAFFIGF 285 (649)
Q Consensus 221 ~~~~~~~~~w~~~---~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~------------~~~l~~~~~~~~~~~~~g~ 285 (649)
++-.|..+.|.|+ +++=|.+.++|.++ |.-||...++++=+... .|+..-+-+++....-.=.
T Consensus 414 ~~qal~iVaW~dvf~k~l~~f~Twl~l~q~--fa~iWvi~~~v~y~~s~~nspt~y~~~~~~yl~p~~la~~~~~~p~~~ 491 (1679)
T KOG0916|consen 414 RYQALIIVAWNDVFYKVLSEFRTWLHLLQN--FARIWVIHFSVFYYYSVYNSPTLYTKNVHIYLGPQPLAAVLWAVPALR 491 (1679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCceeEEEeeeeecCCcHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhh------------hhhh--HHHHHHhhhhhcccchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Q 006345 286 ALALVVVALSGTILLWLYG------------SFWT--TFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLL 351 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~------------~fw~--t~~~~i~gg~~f~~~h~r~~~~i~~~y~iy~~~~~~gwlg~~l 351 (649)
..--=++-..+.++.|.+. .+|. ..++++.+...|. +..=.-+-|++||.- .+|-.|+|.
T Consensus 492 ~~v~~~~~~~~~~~~W~~~pr~~~Gph~~~~r~~~n~~~v~~~w~Pvv~V-----y~mdtqiwy~i~s~l-vggivg~f~ 565 (1679)
T KOG0916|consen 492 GTVESLIMLIATLFEWWFVPRKFPGPHEFFPRFKNNIGVVIANWAPVVLV-----YFMDTQIWYAIFSTL-VGGIVGFFF 565 (1679)
T ss_pred hHHHHHHHHHHHHHhhhcccccCCCchhhhHHHHHHHHHHHHHHhhHhhe-----eehhhHHHHHHHHHH-HHHHHHHHH
Q ss_pred Hh
Q 006345 352 AL 353 (649)
Q Consensus 352 s~ 353 (649)
++
T Consensus 566 ~l 567 (1679)
T KOG0916|consen 566 HL 567 (1679)
T ss_pred Hh
No 314
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.65 E-value=1.9e+02 Score=30.33 Aligned_cols=101 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHH-HHH-HHHHHHHHHhhhhhhhh-----------------hhhhhhhhhhhhhHh
Q 006345 457 SILKREYRKKAMLVHPDKNMGNEKAV-EAF-KKLQNAYEVLFDSFKRK-----------------AYDDELRREELLDYF 517 (649)
Q Consensus 457 ~EIKKAYRKLAlk~HPDKn~~~p~A~-e~F-k~I~~AYeVLSDp~kR~-----------------~YD~~~~~ee~~~~f 517 (649)
++++...|+..-++.-.+.-....+- ++| .+.+.+|.-|++-..++ .||+....--
T Consensus 106 ~kLra~~rk~l~~LK~e~~y~aT~~ii~ky~e~~~~~~~~l~N~k~~k~~~~~~s~~~~~~~~~~w~D~V~~vl~----- 180 (251)
T COG5415 106 AKLRAIHRKKLEKLKEETHYNATSSIIQKYSEELNAKYQELNNLKTEKEKFKKESHVKKKEDSDAWFDKVISVLA----- 180 (251)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccchhHHHHHHhhHHHHhhcccccccccCcccchHHHHHHHHHHh-----
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCccceeeeccCccccccCccccccccccCC
Q 006345 518 RRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDG 590 (649)
Q Consensus 518 ~~f~~~~~~~g~~gffg~gfg~~~g~dE~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG 590 (649)
|.+|....-....+|++|+-......-+..+...-.|+.|+ +++|
T Consensus 181 ------------------------G~ne~~~~~~~alIC~~C~hhngl~~~~ek~~~efiC~~Cn----~~n~ 225 (251)
T COG5415 181 ------------------------GGNELDLSPFKALICPQCHHHNGLYRLAEKPIIEFICPHCN----HKND 225 (251)
T ss_pred ------------------------CCCccccCchhhhccccccccccccccccccchheecccch----hhcC
No 315
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=22.62 E-value=7.3e+02 Score=24.22 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 006345 266 MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (649)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~ 322 (649)
..|+.....++-++..++|...|++...+..+++.-+..+-....++.+++|.+..+
T Consensus 63 ~~~~~P~a~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (194)
T PF07698_consen 63 FPYLIPVAAAAMLLTILIDPRLAILASLFLSLLASLLFGFDFEFFLYSLVSGIVAIF 119 (194)
T ss_pred hhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 477788888888999999999999999888888777766666666666777665443
No 316
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=22.47 E-value=35 Score=28.66 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=15.4
Q ss_pred ccccccCccccccccccCC
Q 006345 572 KASARWCQECNDYHQAKDG 590 (649)
Q Consensus 572 ~s~artC~~C~~~h~AkdG 590 (649)
......|+.|++..|++||
T Consensus 50 ~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 50 VEGELICPECGREYPIRDG 68 (68)
T ss_dssp TTTEEEETTTTEEEEEETT
T ss_pred cCCEEEcCCCCCEEeCCCC
Confidence 3456789999988888887
No 317
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=22.44 E-value=3.9e+02 Score=30.47 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhh---------hHHHHHHhhhhhccc-chhhHHHHHHHH
Q 006345 283 IGFALALVVVALSGTILLWLYGSFW---------TTFFVIFLGGLAFKF-THERLALFITTM 334 (649)
Q Consensus 283 ~g~~~~~~iv~~~~~~ilw~~~~fw---------~t~~~~i~gg~~f~~-~h~r~~~~i~~~ 334 (649)
+|||++-+|-.+.++++.=+|-.+- ++..|..+=|.||++ |-|-.++|+-++
T Consensus 349 iGFt~Ayl~aSla~a~l~~~YL~avl~~~~~g~~f~~~L~~lygvm~glL~~edyALL~Gs~ 410 (443)
T COG4452 349 IGFTVAYLIASLAGALLNGIYLQAVLRGWRNGLLFFLALLLLYGVMFGLLNSEDYALLLGSL 410 (443)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhH
Confidence 5778777777777666665654432 334455566778876 445555555443
No 318
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=22.36 E-value=34 Score=36.08 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEeecccccccCceEecccccccCccceEE
Q 006345 607 QKVDVPCAYVCANSRIYNATDWYICQVNLFL 637 (649)
Q Consensus 607 qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~ 637 (649)
++....|- -|.+..--+--+||+|||.|.|
T Consensus 21 ~~~~~~~~-py~e~~g~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 21 SKEDISSF-PYVEFTGRDSVTCPTCQGTGRI 50 (238)
T ss_pred cccccccC-ccccccCCCCCcCCCCcCCccC
No 319
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=22.33 E-value=5.2e+02 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhhHHHHh
Q 006345 337 IYCAWTYVGWLGLLLAL 353 (649)
Q Consensus 337 iy~~~~~~gwlg~~ls~ 353 (649)
-|.--.+++|.|.++.+
T Consensus 148 ~~gwSf~la~~a~~~~l 164 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILLL 164 (172)
T ss_pred EECHHHHHHHHHHHHHH
Confidence 44555567777766654
No 320
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.09 E-value=3.7e+02 Score=27.88 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=35.3
Q ss_pred HhhhhhhcchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhhHHHH
Q 006345 229 LWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMV------LVVAALVAFFIGFALALVV 291 (649)
Q Consensus 229 ~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~------~~~~~~~~~~~g~~~~~~i 291 (649)
.|.....=|.. +++.|.......+|..++|+...+|++--..+ .....+.+.++++..|.|+
T Consensus 211 k~~e~~~~~~~-l~~~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~l 278 (317)
T PF02535_consen 211 KIPEGFALGSI-LVKAGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFL 278 (317)
T ss_pred HhHHHhhhhhh-hhhhccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH
Confidence 44444333322 45666666777778888888888877544433 2223344455555555554
No 321
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=21.98 E-value=2.9e+02 Score=30.47 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=7.9
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 006345 280 AFFIGFALALVVVALSGTIL 299 (649)
Q Consensus 280 ~~~~g~~~~~~iv~~~~~~i 299 (649)
.+.+|...+.+.--++++++
T Consensus 261 ~~nLsLLTsd~~ali~~i~~ 280 (334)
T PF06027_consen 261 FFNLSLLTSDFYALIIDIFF 280 (334)
T ss_pred eeehHHHHhhHHHHHHHHHh
Confidence 33444444333333334433
No 322
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=21.94 E-value=1.8e+02 Score=28.75 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-------hhhhHHHHHHhhhhhcccchhhH
Q 006345 270 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYG-------SFWTTFFVIFLGGLAFKFTHERL 327 (649)
Q Consensus 270 l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~-------~fw~t~~~~i~gg~~f~~~h~r~ 327 (649)
|++++++-+++.+-..-.|++-++.-=++-..+.+ ..|.+.+++++.|.+|.++++..
T Consensus 8 l~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~ 72 (149)
T PF07158_consen 8 LLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQV 72 (149)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555444332122212222 46999999999999999987543
No 323
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=21.77 E-value=3.1e+02 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.560 Sum_probs=23.1
Q ss_pred hHHHHHHhhhhhcccchhhHHHHHHH-HHHhhhhhh
Q 006345 308 TTFFVIFLGGLAFKFTHERLALFITT-MYSIYCAWT 342 (649)
Q Consensus 308 ~t~~~~i~gg~~f~~~h~r~~~~i~~-~y~iy~~~~ 342 (649)
+.++++++||++-.++.++|+-+-+| +|.++.+..
T Consensus 54 s~~lv~vFGglTl~~~d~~FIk~KpTIi~~lfa~~l 89 (178)
T TIGR00997 54 SFVLIVVFGGLTLIFHDSRFIKWKPTIIYGLFAVIL 89 (178)
T ss_pred HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 34566778888888888888766554 444444443
No 324
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=21.64 E-value=5e+02 Score=27.96 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 006345 287 LALVVVALSGTILLWLYGS 305 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (649)
+..+.++++++++.|+|..
T Consensus 132 ~~~~~l~l~~~~~~~~Yt~ 150 (314)
T PRK07566 132 PWVFLAALLGLFLAWIYSA 150 (314)
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 4456667777888888873
No 325
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=21.63 E-value=3.1e+02 Score=32.20 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHhhhhhhHHHHHHhhhhhccc
Q 006345 273 LVVAALVAFFIGFALALVVVALSGTIL-----LWLYGSFWTTFFVIFLGGLAFKF 322 (649)
Q Consensus 273 ~~~~~~~~~~~g~~~~~~iv~~~~~~i-----lw~~~~fw~t~~~~i~gg~~f~~ 322 (649)
.|+....++-+|..+-++++|+++--+ -||-.--.+.++++++.|+.+..
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677777777788888887554 35544444567777777766543
No 326
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=21.59 E-value=2e+02 Score=34.79 Aligned_cols=41 Identities=5% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHHHHHHHHHhhh
Q 006345 457 SILKREYRKKAMLVHPDKNM-GNEKAVEAFKKLQNAYEVLFD 497 (649)
Q Consensus 457 ~EIKKAYRKLAlk~HPDKn~-~~p~A~e~Fk~I~~AYeVLSD 497 (649)
+++.++-++++...+-.+.. .++.....+..++.+.+-+.+
T Consensus 272 ~~~a~ac~~la~ai~~~~~~~~~~~~~~al~~l~~sl~~~~~ 313 (704)
T TIGR01666 272 ELQAQACKEITASIRLNKPYQHDKRVERALLGTLHSLDLYRA 313 (704)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 35556666666555433221 124455667777777766654
No 327
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=21.41 E-value=83 Score=29.33 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.2
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 006345 280 AFFIGFALALVVVALSGTIL 299 (649)
Q Consensus 280 ~~~~g~~~~~~iv~~~~~~i 299 (649)
-+|.||..|+.|+|++++++
T Consensus 79 na~yGfviGl~i~aLlAlil 98 (108)
T COG4062 79 NAFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999987766
No 328
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=21.35 E-value=4.7e+02 Score=27.28 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 006345 287 LALVVVALSGTILLWLYGS 305 (649)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (649)
+..++++++++++.|+|..
T Consensus 105 ~~~~~~~~~~~~~~~~Yt~ 123 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYAE 123 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445667777777788853
No 329
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.22 E-value=1.6e+03 Score=27.58 Aligned_cols=8 Identities=0% Similarity=0.235 Sum_probs=4.3
Q ss_pred ccccCccc
Q 006345 443 YSALGLSR 450 (649)
Q Consensus 443 YeILGV~~ 450 (649)
++++|.++
T Consensus 440 ~~l~G~~~ 447 (1092)
T PRK09776 440 FELYEIPP 447 (1092)
T ss_pred HHHhCCCc
Confidence 45556554
No 330
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=21.17 E-value=9.2e+02 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 006345 286 ALALVVVALSGTILLWLYGSF 306 (649)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~f 306 (649)
.+..++++++++++.|+|...
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys~~ 123 (285)
T PRK12872 103 GPKFALIFIIPLILGILYSVF 123 (285)
T ss_pred cHHHHHHHHHHHHHHHHHhCh
Confidence 355667777788888888764
No 331
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=21.05 E-value=1.3e+03 Score=27.91 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHh
Q 006345 322 FTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLK 368 (649)
Q Consensus 322 ~~h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~NlaflS~diL~~lLq 368 (649)
++|+|+ +-...|.+|..-+.+|.++.++=+-++.+-|-++..-+.
T Consensus 466 l~nRr~--f~~~~y~~f~~Nv~~Gl~~~~~R~l~s~l~~~~~~~R~D 510 (617)
T PF14752_consen 466 LDNRRA--FHIFTYFLFFYNVLVGLLSCLWRLLKSALFGIVHISRMD 510 (617)
T ss_pred eechhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455664 445578888888888888777666666666655555444
No 332
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional
Probab=20.99 E-value=8.5e+02 Score=27.64 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHH-hh-hhhhHHHHHHhhhhhccc
Q 006345 264 VGMFKFLMVLVVAALVA----FFIGFALALVVVALSGTILLWL-YG-SFWTTFFVIFLGGLAFKF 322 (649)
Q Consensus 264 ~~~~~~l~~~~~~~~~~----~~~g~~~~~~iv~~~~~~ilw~-~~-~fw~t~~~~i~gg~~f~~ 322 (649)
.++.|.++.+|..-+++ .-+|+.. .+.+|-....++.. ++ +||....+-++.+.++.+
T Consensus 117 ~~~iy~llAlGl~lv~G~~G~ldlg~ga-f~~lGAy~~a~l~~~~gl~~~~al~la~lvaal~G~ 180 (419)
T PRK11301 117 LTLIYVILGLGLNVVVGLAGLLDLGYVG-FYAVGAYTYALLNHYYGLGFWECLPIAGLMAALFGF 180 (419)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 34566666666655543 2333332 22232222222222 23 567665555555544433
No 333
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=1.6e+02 Score=34.74 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA-LALVVVALSGTIL 299 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~iv~~~~~~i 299 (649)
+..+|+-+|+-+.|+++| ++.++|....=-.++...+|++ ..+|.++++++++
T Consensus 344 ~~GlF~Gi~~li~s~Isi-~~~~il~~~~~~~~A~~v~~~~~l~~f~~a~la~l~ 397 (564)
T KOG4740|consen 344 SVGLFLGIALLIGSFISI-ALFNILCSEDNPRAADYVVGITDLLLFVVALLACLF 397 (564)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHcCCCchhhHhhhhHHHHHHHHHHHHHHHH
Confidence 456888899999999886 5778888877767777778888 7777776665544
No 334
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=20.90 E-value=9.6e+02 Score=25.00 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhccc------------chhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 006345 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF------------THERLALFITTMYSIYCAWTYVGWLGLLLALNL 355 (649)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~------------~h~r~~~~i~~~y~iy~~~~~~gwlg~~ls~Nl 355 (649)
|..++.+.++++.+..+. |..++.+++....-.. +..+ .=++.++.+++---.-+|+.|++++.=+
T Consensus 238 G~~i~~ip~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~il~P~i~g~~~~-i~p~~~l~~~~~g~~~fG~~G~il~~pi 315 (327)
T PF01594_consen 238 GPIIVLIPAAIYALLQGG-PWAALIVLIVFIVIQQLEDNILRPKIMGRSLG-IHPLLILLAVIIGGYLFGFIGLILAPPI 315 (327)
T ss_pred ccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcccccchhhhcccC-CCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666666667777777 3333333322221111 0011 0123444445555557788899998766
Q ss_pred hhhhH
Q 006345 356 SFVSS 360 (649)
Q Consensus 356 aflS~ 360 (649)
.-+..
T Consensus 316 ~~~~~ 320 (327)
T PF01594_consen 316 LAVIK 320 (327)
T ss_pred HHHHH
Confidence 54433
No 335
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=20.87 E-value=66 Score=24.00 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=14.8
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
..|+.|++.++.. +...-+.|+.|.
T Consensus 4 ~~C~~C~~~~i~~----~~~~~~~C~~Cg 28 (33)
T PF08792_consen 4 KKCSKCGGNGIVN----KEDDYEVCIFCG 28 (33)
T ss_pred eEcCCCCCCeEEE----ecCCeEEcccCC
Confidence 4677777776321 234456677775
No 336
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.73 E-value=5.8e+02 Score=29.80 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhhhH
Q 006345 293 ALSGTILLWLYGSFWTT 309 (649)
Q Consensus 293 ~~~~~~ilw~~~~fw~t 309 (649)
+.++.-+-|++.++...
T Consensus 72 ~~~~~~~~Wi~~~~~~~ 88 (518)
T COG0815 72 GFFLAGFYWLGTSLGVG 88 (518)
T ss_pred HHHHHhHHHHhhHhhhc
Confidence 44555556666555444
No 337
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=20.73 E-value=1.1e+03 Score=25.40 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=10.2
Q ss_pred hhhccchhHHHHHHHHHHHHH
Q 006345 241 FMRMGTTSFFSVIWCSILSVI 261 (649)
Q Consensus 241 ~~~~g~~~~~~~~w~~~~s~~ 261 (649)
+.+++....++++|..|..+.
T Consensus 188 ~~~~~~~~~~l~~~~~f~~ly 208 (303)
T COG1295 188 LLRLRLLVSLLLLTLGFFLLY 208 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554443
No 338
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.72 E-value=84 Score=30.77 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=9.8
Q ss_pred ccCccccccCcccc
Q 006345 569 KKSKASARWCQECN 582 (649)
Q Consensus 569 ~ks~s~artC~~C~ 582 (649)
...+.....|..|+
T Consensus 106 E~~g~G~l~C~~Cg 119 (146)
T PF07295_consen 106 EVVGPGTLVCENCG 119 (146)
T ss_pred cEecCceEecccCC
Confidence 34455677899996
No 339
>PRK01637 hypothetical protein; Reviewed
Probab=20.72 E-value=7.3e+02 Score=26.19 Aligned_cols=16 Identities=38% Similarity=0.958 Sum_probs=8.4
Q ss_pred hhhhhhhhhhhhHHHH
Q 006345 337 IYCAWTYVGWLGLLLA 352 (649)
Q Consensus 337 iy~~~~~~gwlg~~ls 352 (649)
+..+|.|+.|.-+++.
T Consensus 244 ~lllWlyl~~~ilL~G 259 (286)
T PRK01637 244 ILFVWVYLSWCIVLLG 259 (286)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666544443
No 340
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=20.64 E-value=1e+03 Score=25.12 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=6.7
Q ss_pred CcccccCccc
Q 006345 441 DHYSALGLSR 450 (649)
Q Consensus 441 D~YeILGV~~ 450 (649)
+.+..||+-.
T Consensus 169 ~~~~~LGLGD 178 (249)
T smart00730 169 GRFSMLGLGD 178 (249)
T ss_pred CccceecCCC
Confidence 3467788864
No 341
>PRK08601 NADH dehydrogenase subunit 5; Validated
Probab=20.64 E-value=4e+02 Score=31.13 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 006345 247 TSFFSVIWCSILSVIAMVGMFKF 269 (649)
Q Consensus 247 ~~~~~~~w~~~~s~~~~~~~~~~ 269 (649)
.++++++|.-.+.+-.++|++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (509)
T PRK08601 7 SQTLLTLFFIALIIALLSGLLFL 29 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888654
No 342
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=20.61 E-value=6.5e+02 Score=26.35 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 006345 290 VVVALSGTILLWLYGS 305 (649)
Q Consensus 290 ~iv~~~~~~ilw~~~~ 305 (649)
+++++.++++.|+|..
T Consensus 109 ~~l~~~~~~~~~~Ys~ 124 (283)
T TIGR01476 109 VLFTVVGIVLAVIYSM 124 (283)
T ss_pred HHHHHHHHHHhheecC
Confidence 5567777788888864
No 343
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=42 Score=35.98 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=4.6
Q ss_pred ccccccCcc
Q 006345 555 ACKKCNNFH 563 (649)
Q Consensus 555 ~C~kC~GtG 563 (649)
.|..|.+.+
T Consensus 205 ~~~~c~~~~ 213 (288)
T KOG0715|consen 205 TCSYCLGRG 213 (288)
T ss_pred ecccccccc
Confidence 455555543
No 344
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=20.56 E-value=57 Score=23.12 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=12.9
Q ss_pred ccccccCccceeeeccCccccccCcccc
Q 006345 555 ACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 555 ~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
.|++|+..- .-....+..+.+|+.|.
T Consensus 3 ~C~rC~~~~--~~~~~~~r~~~~C~rCq 28 (30)
T PF06827_consen 3 KCPRCWNYI--EDIGINGRSTYLCPRCQ 28 (30)
T ss_dssp B-TTT--BB--EEEEETTEEEEE-TTTC
T ss_pred cCccCCCcc--eEeEecCCCCeECcCCc
Confidence 588888763 12223445677888886
No 345
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=20.54 E-value=3.3e+02 Score=25.79 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=10.2
Q ss_pred hhhHhhhhhhhhHHHHHH
Q 006345 198 HDYVSRKVQQVYPVALNH 215 (649)
Q Consensus 198 ~~~~~~~~~~~~p~~~~~ 215 (649)
.++-..++++|=|.+-.+
T Consensus 68 C~~CV~~~DHHC~w~~~c 85 (174)
T PF01529_consen 68 CNRCVLRFDHHCPWLGNC 85 (174)
T ss_pred cccccccccccchhhccc
Confidence 345556677776654443
No 346
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=20.46 E-value=1.2e+03 Score=26.31 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 006345 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFF 311 (649)
Q Consensus 246 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~ 311 (649)
-++|++-.|-..+..+.+..++-++..+.+=.++..|+---+|..+=.++|..+||+-.-=+-.-+
T Consensus 231 gNsF~v~~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~p~~~Y~~~f 296 (374)
T PF01528_consen 231 GNSFYVSVSDMVFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGLPAIRYENRF 296 (374)
T ss_pred hcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 368888999999999999999888888999999999999999998888888888887554444333
No 347
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=20.40 E-value=7.8e+02 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 006345 204 KVQQVYPVALNHLGHFAKIMLLLSMLWL 231 (649)
Q Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~~~~~w~ 231 (649)
.+...+|.+..++.-+|.+.|+.+-+..
T Consensus 50 ~l~~~~~~~~~~l~~~G~~~L~~lg~~~ 77 (191)
T PF01810_consen 50 ALLKSSPWLFMILKLLGALYLLYLGYKL 77 (191)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688888888888888777665443
No 348
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=20.33 E-value=33 Score=31.49 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=36.9
Q ss_pred ccccccccccCccceeee--ccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEeccccc
Q 006345 551 SRRIACKKCNNFHVWIET--KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDW 628 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T--~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dkt~C 628 (649)
..-..|.+|+|.- -+|. -++....+.|.+|. .| +.+..|- .|.+-|+.+...|
T Consensus 18 ~~G~LCEkCDgkC-~ICDS~VRP~tlVRiC~eC~--------~G---------------s~q~~ci-ic~~~gV~d~~yc 72 (110)
T KOG1705|consen 18 AIGRLCEKCDGKC-VICDSYVRPCTLVRICDECN--------YG---------------SYQGRCV-ICGGVGVSDAYYC 72 (110)
T ss_pred hhhhhHHhcCCcc-cccccccccceeeeeehhcC--------Cc---------------cccCceE-EecCCcccchHHH
Confidence 3344566666642 1111 24566778888887 22 1223566 6888888888888
Q ss_pred ccCccceE
Q 006345 629 YICQVNLF 636 (649)
Q Consensus 629 a~CqG~G~ 636 (649)
..|-.++.
T Consensus 73 ~ectr~ek 80 (110)
T KOG1705|consen 73 KECTRQEK 80 (110)
T ss_pred HHHHhhcc
Confidence 87775554
No 349
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.27 E-value=79 Score=37.69 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=11.4
Q ss_pred cccccccCceEecccccccCccce
Q 006345 612 PCAYVCANSRIYNATDWYICQVNL 635 (649)
Q Consensus 612 pC~y~C~Gsgi~dkt~Ca~CqG~G 635 (649)
.|.| |.-... ....|+.|.+.-
T Consensus 410 ~Ch~-Cg~~~~-~~~~Cp~Cg~~~ 431 (679)
T PRK05580 410 RCHH-CGYQEP-IPKACPECGSTD 431 (679)
T ss_pred ECCC-CcCCCC-CCCCCCCCcCCe
Confidence 4663 653322 235677776653
No 350
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.26 E-value=2e+02 Score=31.50 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 006345 263 MVGMFKFLMVLVVAALVAFFI 283 (649)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~ 283 (649)
|.-++.+|++++++.+++.++
T Consensus 1 M~r~l~~~~~l~~~~~~~~~~ 21 (398)
T PRK10747 1 MLKVLLLFVLLIAGIVVGPMI 21 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554545544
No 351
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=20.24 E-value=9.5e+02 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhhcch-hhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006345 223 MLLLSMLWLDCTIRGI-DSFMRMGTTSFFSVIWCSILSVIAMVGMF 267 (649)
Q Consensus 223 ~~~~~~~w~~~~~rg~-~~~~~~g~~~~~~~~w~~~~s~~~~~~~~ 267 (649)
+.=.++.|.-..+.+- -+..|+=.+|++--+|+|++-+-.+..+.
T Consensus 14 ~md~~lL~~t~~~~~~~~~~~Rll~~A~~Gal~~~~~~~p~~~~~~ 59 (293)
T PF03419_consen 14 LMDYFLLWLTARLLKRRASRWRLLLGAAIGALYSLLIFFPPLSFLY 59 (293)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 3333444443333333 35677777888888887777664444333
No 352
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.22 E-value=1.7e+02 Score=30.78 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=8.5
Q ss_pred HHHHHhcCCCccccc
Q 006345 432 EVVRLLNCTDHYSAL 446 (649)
Q Consensus 432 ev~ril~~~D~YeIL 446 (649)
.+.|++....-|+|.
T Consensus 146 rv~RV~~~vPV~~i~ 160 (224)
T PF13829_consen 146 RVARVVGNVPVHDII 160 (224)
T ss_pred HhccccCCCCeEEEE
Confidence 455666655666553
No 353
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=20.18 E-value=4.1e+02 Score=21.86 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 006345 267 FKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (649)
Q Consensus 267 ~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg 317 (649)
+...++.++...+..++|+..|-.+...++-. .=|+.++++++.|
T Consensus 23 ~~~~~~ig~~~~~~~~~G~~~G~~~~~~~~~~------~~~igg~iLi~iG 67 (67)
T PF02659_consen 23 LLIALIIGIFQFIMPLLGLLLGRRLGRFIGSY------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC
Confidence 34455556666666666776666666544432 3455555555543
No 354
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=20.12 E-value=3.4e+02 Score=34.85 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHh
Q 006345 283 IGFALALVVVALSGTILLWLY 303 (649)
Q Consensus 283 ~g~~~~~~iv~~~~~~ilw~~ 303 (649)
+-+++...+|+++|++-+|=-
T Consensus 995 v~l~v~~i~v~v~G~M~lwgI 1015 (1145)
T TIGR00918 995 IVLVLALMTVELFGMMGLLGI 1015 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 335666777888888877743
No 355
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.09 E-value=1.7e+03 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 006345 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (649)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~fw~t~~~~i~gg~~f~~ 322 (649)
|.+..+-.|+.++-.+.-+-++.+.|++||.++.+
T Consensus 459 g~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~~~~l 493 (806)
T PF05478_consen 459 GNFLMAGVGLSFLFSWFLMLLVLFYFLVGGNTYTL 493 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 55444333333333333344566777788866544
Done!