Query 006345
Match_columns 649
No_of_seqs 353 out of 2657
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yua_A Williams-beuren syndrom 99.8 4.5E-19 1.6E-23 155.6 7.5 71 440-512 17-87 (99)
2 2dn9_A DNAJ homolog subfamily 99.8 3.6E-19 1.2E-23 149.5 6.2 67 440-508 7-73 (79)
3 2ctq_A DNAJ homolog subfamily 99.8 1.1E-18 3.7E-23 156.5 8.4 69 440-510 20-88 (112)
4 2l6l_A DNAJ homolog subfamily 99.7 8.1E-19 2.8E-23 164.9 6.0 71 440-512 10-86 (155)
5 1hdj_A Human HSP40, HDJ-1; mol 99.7 1.3E-18 4.5E-23 145.6 6.2 67 440-509 3-69 (77)
6 2ctp_A DNAJ homolog subfamily 99.7 1.4E-18 4.9E-23 145.7 6.1 67 440-509 7-73 (78)
7 1wjz_A 1700030A21RIK protein; 99.7 8.7E-19 3E-23 151.4 4.7 69 439-509 15-89 (94)
8 2ctr_A DNAJ homolog subfamily 99.7 2.6E-18 8.9E-23 147.7 7.3 67 440-509 7-73 (88)
9 2och_A Hypothetical protein DN 99.7 2.1E-18 7.3E-23 143.1 6.5 69 436-509 4-72 (73)
10 2ej7_A HCG3 gene; HCG3 protein 99.7 2.1E-18 7.3E-23 145.7 6.3 67 440-508 9-76 (82)
11 2ctw_A DNAJ homolog subfamily 99.7 4.8E-18 1.6E-22 151.8 8.7 69 440-510 17-85 (109)
12 2cug_A Mkiaa0962 protein; DNAJ 99.7 2.4E-18 8.1E-23 147.9 6.4 67 440-509 17-83 (88)
13 2ys8_A RAB-related GTP-binding 99.7 6.9E-18 2.4E-22 146.0 9.3 75 426-503 11-87 (90)
14 2o37_A Protein SIS1; HSP40, J- 99.7 5.8E-18 2E-22 146.8 6.9 69 436-509 4-72 (92)
15 2dmx_A DNAJ homolog subfamily 99.7 5.1E-18 1.7E-22 146.6 6.1 67 440-508 9-76 (92)
16 2lgw_A DNAJ homolog subfamily 99.7 8.5E-18 2.9E-22 148.2 7.5 68 440-509 2-70 (99)
17 1bq0_A DNAJ, HSP40; chaperone, 99.7 1.8E-18 6.3E-23 152.6 2.7 68 440-509 3-70 (103)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.2E-17 4.3E-22 148.5 6.6 70 439-510 14-87 (109)
19 3apq_A DNAJ homolog subfamily 99.7 2.2E-17 7.5E-22 158.6 5.3 68 440-509 2-69 (210)
20 3lz8_A Putative chaperone DNAJ 99.6 2.2E-17 7.6E-22 173.2 0.0 69 438-509 26-94 (329)
21 3hho_A CO-chaperone protein HS 99.6 3.8E-16 1.3E-20 150.4 6.3 71 439-509 3-78 (174)
22 3bvo_A CO-chaperone protein HS 99.6 1.2E-15 4.1E-20 150.9 6.2 69 440-508 43-116 (207)
23 1iur_A KIAA0730 protein; DNAJ 99.6 8.6E-16 2.9E-20 133.3 4.4 64 440-505 16-80 (88)
24 1fpo_A HSC20, chaperone protei 99.6 9.9E-16 3.4E-20 147.2 4.9 69 441-509 2-75 (171)
25 1gh6_A Large T antigen; tumor 99.6 2.7E-16 9.2E-21 142.4 0.6 63 440-508 8-72 (114)
26 2pf4_E Small T antigen; PP2A, 99.6 5.8E-16 2E-20 149.8 1.8 66 440-509 11-76 (174)
27 1n4c_A Auxilin; four helix bun 99.6 1.9E-15 6.3E-20 147.2 5.1 63 440-504 117-182 (182)
28 2qwo_B Putative tyrosine-prote 99.5 2.1E-15 7.2E-20 132.2 3.4 62 434-497 26-91 (92)
29 1faf_A Large T antigen; J doma 99.5 4.2E-15 1.4E-19 126.1 4.6 62 440-505 11-72 (79)
30 3uo3_A J-type CO-chaperone JAC 99.5 9E-15 3.1E-19 141.9 3.9 65 440-508 11-81 (181)
31 3ag7_A Putative uncharacterize 99.5 1.6E-14 5.5E-19 129.2 2.8 57 440-499 41-104 (106)
32 3apo_A DNAJ homolog subfamily 99.4 8E-15 2.8E-19 165.9 0.7 69 440-510 21-89 (780)
33 2guz_A Mitochondrial import in 99.4 8.9E-14 3.1E-18 115.5 4.4 58 440-502 14-71 (71)
34 2y4t_A DNAJ homolog subfamily 99.0 3.7E-10 1.3E-14 114.4 6.4 67 438-506 380-449 (450)
35 2ctt_A DNAJ homolog subfamily 98.9 9.3E-10 3.2E-14 97.2 6.8 78 545-641 20-97 (104)
36 1exk_A DNAJ protein; extended 98.9 2.2E-09 7.7E-14 89.7 6.8 74 546-638 4-77 (79)
37 1nlt_A Protein YDJ1, mitochond 98.8 2.9E-09 9.8E-14 107.6 4.9 78 547-640 32-111 (248)
38 2guz_B Mitochondrial import in 98.3 6.2E-07 2.1E-11 74.0 4.9 52 441-498 5-59 (65)
39 3lcz_A YCZA, inhibitor of trap 96.6 0.00043 1.5E-08 55.0 0.5 34 607-641 6-39 (53)
40 2bx9_A Anti-trap, AT, tryptoph 94.5 0.015 5.3E-07 46.0 2.2 30 610-640 9-38 (53)
41 1exk_A DNAJ protein; extended 94.5 0.0083 2.8E-07 49.7 0.7 51 573-644 9-67 (79)
42 2ctt_A DNAJ homolog subfamily 93.4 0.041 1.4E-06 48.2 2.9 52 552-625 44-95 (104)
43 2bx9_A Anti-trap, AT, tryptoph 92.0 0.016 5.4E-07 45.9 -1.5 41 551-606 7-47 (53)
44 1nlt_A Protein YDJ1, mitochond 90.4 0.027 9.3E-07 56.7 -1.9 52 574-645 37-100 (248)
45 3lcz_A YCZA, inhibitor of trap 89.1 0.15 5E-06 40.4 1.7 31 552-597 8-38 (53)
46 2pzi_A Probable serine/threoni 77.6 1.4 4.6E-05 49.3 3.8 46 439-494 628-675 (681)
47 2js4_A UPF0434 protein BB2007; 57.0 4 0.00014 33.9 1.5 36 552-591 7-42 (70)
48 2pk7_A Uncharacterized protein 56.8 4 0.00014 33.8 1.5 35 552-590 7-41 (69)
49 2jr6_A UPF0434 protein NMA0874 56.6 3.9 0.00013 33.8 1.4 35 553-591 8-42 (68)
50 2hf1_A Tetraacyldisaccharide-1 56.4 3.9 0.00013 33.8 1.4 36 552-591 7-42 (68)
51 2jny_A Uncharacterized BCR; st 56.0 4 0.00014 33.7 1.3 35 553-591 10-44 (67)
52 3pmq_A Decaheme cytochrome C M 45.6 5.5 0.00019 45.7 0.8 33 545-582 183-218 (669)
53 3w0f_A Endonuclease 8-like 3; 42.5 18 0.00063 37.3 4.1 31 555-585 253-283 (287)
54 2xzf_A Formamidopyrimidine-DNA 39.1 18 0.00061 36.7 3.3 27 554-582 243-269 (271)
55 3j1r_A Archaeal adhesion filam 28.9 43 0.0015 23.0 2.7 16 289-304 10-25 (26)
56 3mkt_A Multi antimicrobial ext 28.7 3.2E+02 0.011 27.6 10.8 66 298-363 359-438 (460)
57 3u6p_A Formamidopyrimidine-DNA 28.3 43 0.0015 34.0 4.1 27 554-582 246-272 (273)
58 1k82_A Formamidopyrimidine-DNA 26.5 44 0.0015 33.8 3.7 27 554-582 241-267 (268)
59 2kpi_A Uncharacterized protein 25.0 21 0.00073 28.2 0.8 32 553-590 10-43 (56)
60 1y0p_A Fumarate reductase flav 22.3 17 0.00057 39.7 -0.4 23 611-634 66-88 (571)
61 2fiy_A Protein FDHE homolog; F 22.3 28 0.00096 36.2 1.4 30 552-581 181-214 (309)
62 1gh9_A 8.3 kDa protein (gene M 21.5 34 0.0012 28.5 1.4 35 553-593 4-38 (71)
No 1
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=155.64 Aligned_cols=71 Identities=34% Similarity=0.583 Sum_probs=66.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee 512 (649)
.|||+||||++ +++.+|||+|||+|++++|||+++.++.+.++|++|++||++|+||.+|+.||+.+..++
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e 87 (99)
T 2yua_A 17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDE 87 (99)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHH
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccc
Confidence 79999999999 799999999999999999999998778999999999999999999999999999765443
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=149.48 Aligned_cols=67 Identities=43% Similarity=0.601 Sum_probs=64.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||+||||++ +++.++||++||++++++|||+++.++.+.+.|++|++||++|+||.+|+.||.++
T Consensus 7 ~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 7 GDYYQILGVPR--NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 69999999999 79999999999999999999999877889999999999999999999999999875
No 3
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=156.51 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=65.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
.|||+||||++ +++.+|||+|||+|++++||||+++++.|.++|++|++||++|+||.+|+.||.++..
T Consensus 20 ~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCHHHHTTCCT--TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 79999999999 7999999999999999999999987788999999999999999999999999998754
No 4
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-19 Score=164.89 Aligned_cols=71 Identities=28% Similarity=0.531 Sum_probs=64.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE------KAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p------~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ee 512 (649)
.|||+||||++ +++.++||+|||+|++++||||++.++ .|.+.|++|++||++|+||.+|+.||..+...+
T Consensus 10 ~~~y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 10 KDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence 69999999999 789999999999999999999997652 477999999999999999999999999876543
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.74 E-value=1.3e-18 Score=145.57 Aligned_cols=67 Identities=42% Similarity=0.633 Sum_probs=63.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.++||++||++++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCT--TCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 68999999999 7999999999999999999999974 6789999999999999999999999998754
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=145.65 Aligned_cols=67 Identities=45% Similarity=0.604 Sum_probs=63.3
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||++||++++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 7 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 7 GDYYEILGVSR--GASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 79999999999 7999999999999999999999974 7899999999999999999999999998753
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.74 E-value=8.7e-19 Score=151.41 Aligned_cols=69 Identities=32% Similarity=0.539 Sum_probs=63.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~------p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..|||+||||++ +++.+|||+|||+|++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 15 ~~~~y~iLgv~~--~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 15 KKDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 379999999999 79999999999999999999998743 5688999999999999999999999998754
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=147.67 Aligned_cols=67 Identities=34% Similarity=0.549 Sum_probs=63.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||++||+|++++|||+++ ++.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 7 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 7 GSYYDILGVPK--SASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CSHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 69999999999 799999999999999999999997 58899999999999999999999999999764
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.73 E-value=2.1e-18 Score=143.08 Aligned_cols=69 Identities=41% Similarity=0.618 Sum_probs=61.4
Q ss_pred HhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 436 il~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
+....|||+||||++ +++.++||++||++++++|||+++++ .+.|++|++||++|+||.+|+.||+++.
T Consensus 4 m~~~~~~y~iLgl~~--~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 4 MVKETGYYDVLGVKP--DASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp --CCCCHHHHHTCCT--TCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred ccCCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345689999999999 79999999999999999999999653 5899999999999999999999998753
No 10
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=145.70 Aligned_cols=67 Identities=43% Similarity=0.612 Sum_probs=62.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||+||||++ +++.+|||++||++++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||.++
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 9 VDYYEVLDVPR--QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp CCHHHHTTCCT--TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 69999999999 79999999999999999999999765 468899999999999999999999999875
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=4.8e-18 Score=151.80 Aligned_cols=69 Identities=39% Similarity=0.576 Sum_probs=65.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
.|||+||||++ +++.+|||++||+|++++|||+++.++.+.++|++|++||++|+||.+|+.||.++..
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 69999999999 7999999999999999999999987789999999999999999999999999987643
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.4e-18 Score=147.93 Aligned_cols=67 Identities=37% Similarity=0.528 Sum_probs=63.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||++||++++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 17 ~d~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 17 FDPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 69999999999 7999999999999999999999975 7899999999999999999999999998753
No 13
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=146.04 Aligned_cols=75 Identities=32% Similarity=0.526 Sum_probs=67.7
Q ss_pred CCCcH--HHHHHHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhh
Q 006345 426 EMTSE--DEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKA 503 (649)
Q Consensus 426 ~~tse--eev~ril~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~ 503 (649)
.++.+ +++.+++...|||+||||++ +++.+|||+|||+|+++|||||++. +.+.++|++|++||++|+||.+|+.
T Consensus 11 ~~s~~~~~~~~~~~~~~~~y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 11 SFTKEQADAIRRIRNSKDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CCCHHHHHHHHHHHTCSSHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 45544 47788899999999999999 7999999999999999999999975 7889999999999999999999875
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.8e-18 Score=146.78 Aligned_cols=69 Identities=39% Similarity=0.613 Sum_probs=62.9
Q ss_pred HhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 436 il~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
++...|||+||||++ +++.+|||++||+|++++|||+++++ .+.|++|++||++|+||.+|+.||.++.
T Consensus 4 m~~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 4 MVKETKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp CCSCCHHHHHHTCCT--TCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cccCCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 445689999999999 79999999999999999999999764 4799999999999999999999999864
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=146.63 Aligned_cols=67 Identities=43% Similarity=0.597 Sum_probs=62.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||+||||++ +++.+|||++||+|++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||..+
T Consensus 9 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 9 ANYYEVLGVQA--SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCHHHHHTCCT--TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred cCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 69999999999 78999999999999999999999765 578899999999999999999999999875
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-18 Score=148.24 Aligned_cols=68 Identities=43% Similarity=0.623 Sum_probs=63.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||++||++++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 2 ~d~Y~iLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPR--SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCT--TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 68999999999 79999999999999999999999765 4688999999999999999999999999764
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.71 E-value=1.8e-18 Score=152.63 Aligned_cols=68 Identities=41% Similarity=0.687 Sum_probs=64.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||++||+|++++|||+++.++.+.++|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCSTTTTSSCS--SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 68999999999 799999999999999999999998767899999999999999999999999999864
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.70 E-value=1.2e-17 Score=148.52 Aligned_cols=70 Identities=31% Similarity=0.424 Sum_probs=64.6
Q ss_pred CCCcccccCcccCCCC-CHHHHHHHHHHHHHHhCCCCCCC---cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENV-DVSILKREYRKKAMLVHPDKNMG---NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 439 ~~D~YeILGV~~~~~A-s~~EIKKAYRKLAlk~HPDKn~~---~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
..|||+||||++ ++ +.+|||+|||++++++|||++++ .+.+.+.|++|++||++|+||.+|+.||..+..
T Consensus 14 ~~~~y~iLgv~~--~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 14 LENCYDVLEVNR--EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSCHHHHTTCCG--GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCHHHHcCCCC--CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 379999999999 68 99999999999999999999975 367889999999999999999999999998764
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.67 E-value=2.2e-17 Score=158.60 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=64.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||++ +++.+|||+|||++++++||||+++++.|.++|++|++||++|+||.+|+.||+++.
T Consensus 2 ~~~y~~l~~~~--~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 58999999999 799999999999999999999998788899999999999999999999999999864
No 20
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.63 E-value=2.2e-17 Score=173.16 Aligned_cols=69 Identities=35% Similarity=0.527 Sum_probs=0.0
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..+|||+||||++ +|+.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||+++.
T Consensus 26 ~~~d~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCC--CCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 3479999999999 7999999999999999999999974 6899999999999999999999999999743
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.61 E-value=3.8e-16 Score=150.35 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=62.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~-----A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
..|||+||||++.++++.++||++||+++++|||||+++.+. |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 379999999999544459999999999999999999976543 77899999999999999999999998654
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=150.86 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=61.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||+||||++..+++.++||++||+|++++||||+++++ .|.+.|++|++||+||+||.+|+.||..+
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 6999999999955589999999999999999999997643 25688999999999999999999999754
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.57 E-value=8.6e-16 Score=133.26 Aligned_cols=64 Identities=28% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYD 505 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~-p~A~e~Fk~I~~AYeVLSDp~kR~~YD 505 (649)
.++|+||||++ +++.+|||+|||+|+++||||+++++ +.|.++|++|++||++|+|+..|..+.
T Consensus 16 ~~~y~vLgv~~--~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~ 80 (88)
T 1iur_A 16 KEVTSVVEQAW--KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA 80 (88)
T ss_dssp HHHHHHHHHTT--SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred HHHHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 57899999999 79999999999999999999999876 458999999999999999998875444
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.57 E-value=9.9e-16 Score=147.17 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=61.1
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 441 D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p-----~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
|||+||||++.++++.++||++||+++++|||||+++++ .|.+.|+.|++||+||+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999943349999999999999999999997653 356899999999999999999999998653
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.57 E-value=2.7e-16 Score=142.43 Aligned_cols=63 Identities=29% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~--~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.+||+||||++ +++. ++||+|||+|++++||||++. .++|++|++||++|+||.+|+.||.++
T Consensus 8 ~~~Y~iLgv~~--~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCT--TSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCC--CCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 58999999999 6666 999999999999999999964 489999999999999999999999753
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.55 E-value=5.8e-16 Score=149.78 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=56.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~ 509 (649)
.|||+||||+++++.+.+|||+|||++|+++||||+++ +++|++|++||++|+||.+|+.||+++.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 58999999999432237999999999999999999864 3899999999999999999999999864
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.55 E-value=1.9e-15 Score=147.17 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=58.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHHHHhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAY 504 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~---A~e~Fk~I~~AYeVLSDp~kR~~Y 504 (649)
.|||+||||++ +++.+|||+|||++++++||||+++++. |.+.|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~--~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGG--GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCC--CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999 7999999999999999999999976543 889999999999999999999988
No 28
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.53 E-value=2.1e-15 Score=132.20 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=55.1
Q ss_pred HHHhcC-CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH---HHHHHHHHHHHHHHHhhh
Q 006345 434 VRLLNC-TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFD 497 (649)
Q Consensus 434 ~ril~~-~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p---~A~e~Fk~I~~AYeVLSD 497 (649)
..++.. .++|++|||++ .++.+|||+|||+++++|||||+++++ .|+++|++|++||+||.+
T Consensus 26 ~~~L~~~~~~y~~Lgv~~--~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 26 HTVLWAGETKWKPVGMAD--LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp GGTSCTTCCSCCCCCGGG--SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCeecCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 355555 59999999999 799999999999999999999998754 488999999999999986
No 29
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.53 E-value=4.2e-15 Score=126.08 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=54.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYD 505 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD 505 (649)
.++|+||||+++..++.++||+|||+|++++|||+++. .++|++|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 57899999999222999999999999999999999853 489999999999999999998754
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.48 E-value=9e-15 Score=141.92 Aligned_cols=65 Identities=31% Similarity=0.441 Sum_probs=59.4
Q ss_pred CCccccc------CcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006345 440 TDHYSAL------GLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (649)
Q Consensus 440 ~D~YeIL------GV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~ 508 (649)
.|||+|| |+++ .+++.++||++||+|++++||||+++ +.+.|++|++||+||+||.+|+.||..+
T Consensus 11 ~d~y~ll~~~~p~~~~~-~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 11 STFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCTGGGCTTTCTTCSCC-SCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHhccccccCCCC-CCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 7999999 4665 37999999999999999999999974 7789999999999999999999999876
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.45 E-value=1.6e-14 Score=129.24 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=51.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---cH----HHHHHHHHHHHHHHHhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---NE----KAVEAFKKLQNAYEVLFDSF 499 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~---~p----~A~e~Fk~I~~AYeVLSDp~ 499 (649)
.|||+|||+++ |+.+|||+|||++++++||||++. ++ .|+++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 59999999986 899999999999999999999863 11 47899999999999999986
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.45 E-value=8e-15 Score=165.86 Aligned_cols=69 Identities=38% Similarity=0.568 Sum_probs=40.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~~YD~~~~~ 510 (649)
.|||+||||++ +|+.+|||+|||+|++++||||+++++.|.++|++|++||++|+||.+|+.||+++..
T Consensus 21 ~~~y~~lg~~~--~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 21 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp --CHHHHTCCT--TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence 79999999999 7999999999999999999999987788999999999999999999999999998753
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.9e-14 Score=115.45 Aligned_cols=58 Identities=24% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhh
Q 006345 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRK 502 (649)
Q Consensus 440 ~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp~kR~ 502 (649)
.++|+||||++. +++.+|||++||+|++++|||++. ++ +.|++|++||++|+|+..|+
T Consensus 14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g-~~---~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHhhhhhcC
Confidence 578999999983 389999999999999999999974 33 69999999999999998774
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.98 E-value=3.7e-10 Score=114.38 Aligned_cols=67 Identities=37% Similarity=0.512 Sum_probs=56.4
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 006345 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (649)
Q Consensus 438 ~~~D~YeILGV~~~~~As~~EIKKAYRKLAlk~HPDKn~~~---p~A~e~Fk~I~~AYeVLSDp~kR~~YD~ 506 (649)
...++|++||+.+ .++.++|+++|+++++++|||+.+.+ +.+.++|++|.+||++|+||++|..||.
T Consensus 380 ~~~~~y~~lg~~~--~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 380 QKRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HSCCSGGGSCSST--TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred cchhHHHHhCCCc--cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3469999999999 67889999999999999999999764 3488999999999999999999999997
No 35
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=9.3e-10 Score=97.18 Aligned_cols=78 Identities=17% Similarity=0.350 Sum_probs=64.6
Q ss_pred CCCCccccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec
Q 006345 545 DDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (649)
Q Consensus 545 E~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d 624 (649)
+..+.+.+.+.|+.|+|+| .+++....+|+.|+ |+|++.... |+++ .+.+|+ .|.|.|..+
T Consensus 20 ~~~i~~~~~~~C~~C~G~G-----~~~g~~~~~C~~C~-------G~G~~~~~~-----G~~~-~~~~C~-~C~G~G~~i 80 (104)
T 2ctt_A 20 NKEFTVNIMDTCERCNGKG-----NEPGTKVQHCHYCG-------GSGMETINT-----GPFV-MRSTCR-RCGGRGSII 80 (104)
T ss_dssp CTTCCSSCCEECSSSSSSS-----SCTTCCCEECSSSS-------SSCEEEEEE-----TTEE-EEEECS-SSSSSSEEC
T ss_pred EEEEEeeeeeECCCCcCCc-----cCCCCCCccCCCCC-------CCEEEEEEe-----CCEE-EEEECC-cCCCcceEC
Confidence 4567789999999999998 56677789999999 999887642 3333 467899 899999999
Q ss_pred ccccccCccceEEeeeh
Q 006345 625 ATDWYICQVNLFLFSIL 641 (649)
Q Consensus 625 kt~Ca~CqG~G~~~~~~ 641 (649)
.++|+.|+|.|++...+
T Consensus 81 ~~~C~~C~G~G~v~~~k 97 (104)
T 2ctt_A 81 ISPCVVCRGAGQAKQKK 97 (104)
T ss_dssp SSCCSSSSSCSEECCCC
T ss_pred CCcCCCCCCeeEEEEEE
Confidence 99999999999986543
No 36
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.89 E-value=2.2e-09 Score=89.74 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=61.0
Q ss_pred CCCccccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc
Q 006345 546 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 625 (649)
Q Consensus 546 ~~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk 625 (649)
..+.+.+.+.|+.|+|+| ..+......|+.|+ |+|.+... + |+++ .+.+|+ .|.|.|.++.
T Consensus 4 ~~i~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~----g~~~-~~~~C~-~C~G~G~~~~ 64 (79)
T 1exk_A 4 KEIRIPTLEECDVCHGSG-----AKPGTQPQTCPTCH-------GSGQVQMR-Q----GFFA-VQQTCP-HCQGRGTLIK 64 (79)
T ss_dssp TSCCCCCEEECGGGTTTS-----BCSSSCCEECTTTT-------TSSEEEEE-E----TTEE-EEEECT-TTTTSSEECS
T ss_pred EEEEcccceECCCCcccc-----cCCCccCCCCCCCc-------CeEEEEEE-c----CCCE-EeeECc-CCCCccEECC
Confidence 456788999999999997 44455567999999 99987653 2 4444 567999 8999999999
Q ss_pred cccccCccceEEe
Q 006345 626 TDWYICQVNLFLF 638 (649)
Q Consensus 626 t~Ca~CqG~G~~~ 638 (649)
++|+.|+|.|++.
T Consensus 65 ~~C~~C~G~G~~~ 77 (79)
T 1exk_A 65 DPCNKCHGHGRVE 77 (79)
T ss_dssp SBCGGGTTSSEEE
T ss_pred CcCCCCCCeEEEe
Confidence 9999999999874
No 37
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.79 E-value=2.9e-09 Score=107.58 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=65.6
Q ss_pred CCccccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEec--
Q 006345 547 PFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-- 624 (649)
Q Consensus 547 ~f~isr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~d-- 624 (649)
.+.+.+.+.|+.|+|+| .++++ ..+|+.|+ |+|++.... +.++ ++|+.+.+|+ .|.|.|..+
T Consensus 32 ~i~~~r~~~C~~C~G~G-----~~~g~-~~~C~~C~-------G~G~~~~~~-~~g~-~~~~~~~~C~-~C~G~G~~i~~ 95 (248)
T 1nlt_A 32 KLALNKQILCKECEGRG-----GKKGA-VKKCTSCN-------GQGIKFVTR-QMGP-MIQRFQTECD-VCHGTGDIIDP 95 (248)
T ss_dssp EEEEEEEEECTTTTTCS-----BSTTT-CCCCTTSS-------SSSCEEEEE-ESSS-EEEEEECSCT-TCSSSSSCCCT
T ss_pred EEEeeEEEeCCCCcCcc-----CCCCC-CccCCCCC-------CCcEEEEEE-ecCc-eEEEEEEcCC-CCCCcCEEecc
Confidence 45678889999999997 55555 58999999 999887654 4566 7888999999 899999888
Q ss_pred ccccccCccceEEeee
Q 006345 625 ATDWYICQVNLFLFSI 640 (649)
Q Consensus 625 kt~Ca~CqG~G~~~~~ 640 (649)
.++|+.|+|.|++...
T Consensus 96 ~~~C~~C~G~g~~~~~ 111 (248)
T 1nlt_A 96 KDRCKSCNGKKVENER 111 (248)
T ss_dssp TSBCSSSTTSCEEEEE
T ss_pred CCCCcccCCCceEeee
Confidence 9999999999998654
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.2e-07 Score=73.95 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=44.7
Q ss_pred CcccccCcccCCC---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhh
Q 006345 441 DHYSALGLSRFEN---VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (649)
Q Consensus 441 D~YeILGV~~~~~---As~~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeVLSDp 498 (649)
+-|.||||++ + ++.++|+++||+|....||||..+ + ....+|++|+++|...
T Consensus 5 EA~~ILgv~~--~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-~---yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEE--SKGDLNMDKINNRFNYLFEVNDKEKGGS-F---YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCG--GGTCCSHHHHHHHHHHHHHHTCGGGTCC-H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CcCcCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHHHHH
Confidence 3488999998 6 899999999999999999999743 3 6677899999999643
No 39
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.58 E-value=0.00043 Score=54.97 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=29.5
Q ss_pred EEEeecccccccCceEecccccccCccceEEeeeh
Q 006345 607 QKVDVPCAYVCANSRIYNATDWYICQVNLFLFSIL 641 (649)
Q Consensus 607 qq~~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~~ 641 (649)
|+++.+|+ .|.|+|..+.++|+.|+|.|++....
T Consensus 6 qq~~~~C~-~C~GsG~~i~~~C~~C~G~G~v~~~~ 39 (53)
T 3lcz_A 6 DDLETTCP-NCNGSGREEPEPCPKCLGKGVILTAQ 39 (53)
T ss_dssp HHHEEECT-TTTTSCEETTEECTTTTTSSEEECHH
T ss_pred CceeccCc-CCcccccCCCCcCCCCCCcEEEEEEe
Confidence 45677999 89999999999999999999987654
No 40
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.54 E-value=0.015 Score=46.02 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=24.6
Q ss_pred eecccccccCceEecccccccCccceEEeee
Q 006345 610 DVPCAYVCANSRIYNATDWYICQVNLFLFSI 640 (649)
Q Consensus 610 ~~pC~y~C~Gsgi~dkt~Ca~CqG~G~~~~~ 640 (649)
+.+|+ .|.|+|..+..+|+.|+|.|.+...
T Consensus 9 ~~~C~-~C~GsG~~~~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 9 EVACP-KCERAGEIEGTPCPACSGKGVILTA 38 (53)
T ss_dssp EEECT-TTTTSSEETTEECTTTTTSSEEECH
T ss_pred cccCC-CCcceeccCCCCCccCCCCccEEEE
Confidence 34788 7998888888899999999988653
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=94.52 E-value=0.0083 Score=49.69 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=37.2
Q ss_pred cccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc--------cccccCccceEEeeehhhh
Q 006345 573 ASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--------TDWYICQVNLFLFSILNQC 644 (649)
Q Consensus 573 s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk--------t~Ca~CqG~G~~~~~~~~~ 644 (649)
.....|+.|+ |+|.... . ...+|+ .|.|+|.... .+|+.|+|.|.+. .+.|
T Consensus 9 ~~~~~C~~C~-------G~G~~~~--------~---~~~~C~-~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--~~~C 67 (79)
T 1exk_A 9 PTLEECDVCH-------GSGAKPG--------T---QPQTCP-TCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI--KDPC 67 (79)
T ss_dssp CCEEECGGGT-------TTSBCSS--------S---CCEECT-TTTTSSEEEEEETTEEEEEECTTTTTSSEEC--SSBC
T ss_pred ccceECCCCc-------ccccCCC--------c---cCCCCC-CCcCeEEEEEEcCCCEEeeECcCCCCccEEC--CCcC
Confidence 3467899999 9995311 1 134799 7999987754 5999999999874 3444
No 42
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.38 E-value=0.041 Score=48.18 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=35.8
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEecc
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 625 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~dk 625 (649)
....|+.|+|+|........-....+|+.|+ |.|.+. ..+|+ .|.|.|....
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~-------G~G~~i--------------~~~C~-~C~G~G~v~~ 95 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCG-------GRGSII--------------ISPCV-VCRGAGQAKQ 95 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSS-------SSSEEC--------------SSCCS-SSSSCSEECC
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCC-------CcceEC--------------CCcCC-CCCCeeEEEE
Confidence 3568999999984322211112346899999 999653 24799 8999988764
No 43
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=91.98 E-value=0.016 Score=45.94 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=27.7
Q ss_pred ccccccccccCccceeeeccCccccccCccccccccccCCCeEEEEeecCCcccee
Q 006345 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF 606 (649)
Q Consensus 551 sr~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~ 606 (649)
.....|+.|+|+|. .. ...|+.|+ |+|.+.......++|++
T Consensus 7 ~~~~~C~~C~GsG~-----~~---~~~C~~C~-------G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 7 DLEVACPKCERAGE-----IE---GTPCPACS-------GKGVILTAQGYTLLDFI 47 (53)
T ss_dssp HHEEECTTTTTSSE-----ET---TEECTTTT-------TSSEEECHHHHHHHHHH
T ss_pred CccccCCCCcceec-----cC---CCCCccCC-------CCccEEEEecccHHHHH
Confidence 34578999999972 21 25799999 99988764323344443
No 44
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=90.43 E-value=0.027 Score=56.69 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=38.6
Q ss_pred ccccCccccccccccCCCeEEEEeecCCccceeEEEeecccccccCceEe------------cccccccCccceEEeeeh
Q 006345 574 SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY------------NATDWYICQVNLFLFSIL 641 (649)
Q Consensus 574 ~artC~~C~~~h~AkdG~G~Ve~~~q~~~~G~~qq~~~pC~y~C~Gsgi~------------dkt~Ca~CqG~G~~~~~~ 641 (649)
....|+.|+ |+|.. + |- ..+|+ .|.|+|.. ....|+.|+|.|.+....
T Consensus 37 r~~~C~~C~-------G~G~~-----~---g~----~~~C~-~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~ 96 (248)
T 1nlt_A 37 KQILCKECE-------GRGGK-----K---GA----VKKCT-SCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK 96 (248)
T ss_dssp EEEECTTTT-------TCSBS-----T---TT----CCCCT-TSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT
T ss_pred EEEeCCCCc-------CccCC-----C---CC----CccCC-CCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC
Confidence 356899999 99952 1 11 14799 79998853 467899999999877667
Q ss_pred hhhh
Q 006345 642 NQCL 645 (649)
Q Consensus 642 ~~~~ 645 (649)
+.|-
T Consensus 97 ~~C~ 100 (248)
T 1nlt_A 97 DRCK 100 (248)
T ss_dssp SBCS
T ss_pred CCCc
Confidence 7773
No 45
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=89.12 E-value=0.15 Score=40.42 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=23.2
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCCCeEEEEe
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS 597 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~Ve~~ 597 (649)
....|+.|+|+|.. ....|+.|+ |+|.+...
T Consensus 8 ~~~~C~~C~GsG~~--------i~~~C~~C~-------G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGRE--------EPEPCPKCL-------GKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEE--------TTEECTTTT-------TSSEEECH
T ss_pred eeccCcCCcccccC--------CCCcCCCCC-------CcEEEEEE
Confidence 35689999999721 126799999 99988653
No 46
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=77.62 E-value=1.4 Score=49.32 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=34.8
Q ss_pred CCCcccccCcccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Q 006345 439 CTDHYSALGLSRFENVDV--SILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEV 494 (649)
Q Consensus 439 ~~D~YeILGV~~~~~As~--~EIKKAYRKLAlk~HPDKn~~~p~A~e~Fk~I~~AYeV 494 (649)
..|||.+||++. +... .+|+++||++|+..+++ .+++..+..|+.|
T Consensus 628 ~~~~~~~lG~~~--~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPF--TSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEES--SHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCC--ChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 358999999976 3222 56999999999976443 3678888888876
No 47
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=57.01 E-value=4 Score=33.93 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=25.3
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
.-..||.|+|.= ..........|+.|+...|++||=
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 7 DILVCPVCKGRL----EFQRAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCBCTTTCCBE----EEETTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCcC----EEeCCCCEEEcCCCCceecCCCCe
Confidence 346899999962 222234567899999888887773
No 48
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=56.77 E-value=4 Score=33.85 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.8
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCC
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDG 590 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG 590 (649)
.-..||.|+|.= ..........|+.|+...|++||
T Consensus 7 eiL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 7 DILACPICKGPL----KLSADKTELISKGAGLAYPIRDG 41 (69)
T ss_dssp GTCCCTTTCCCC----EECTTSSEEEETTTTEEEEEETT
T ss_pred hheeCCCCCCcC----eEeCCCCEEEcCCCCcEecCcCC
Confidence 346899999862 12233456789999988888776
No 49
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=56.58 E-value=3.9 Score=33.78 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=24.7
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
-..||.|+|.= ..........|+.|+...|++||=
T Consensus 8 iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 8 ILVCPVTKGRL----EYHQDKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CCBCSSSCCBC----EEETTTTEEEETTTTEEEEEETTE
T ss_pred heECCCCCCcC----eEeCCCCEEEcCCCCcEecCCCCe
Confidence 46899999862 122234567899999888887763
No 50
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=56.37 E-value=3.9 Score=33.80 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.1
Q ss_pred cccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 552 RRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
.-..||.|+|.= ..........|+.|+...|++||=
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2hf1_A 7 EILVCPLCKGPL----VFDKSKDELICKGDRLAFPIKDGI 42 (68)
T ss_dssp EECBCTTTCCBC----EEETTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCcC----eEeCCCCEEEcCCCCcEecCCCCe
Confidence 346899999862 122234567899999888887773
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=55.97 E-value=4 Score=33.74 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=25.0
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCC
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGD 591 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~ 591 (649)
-..||.|+|.= ..........|+.|+...|++||=
T Consensus 10 iL~CP~ck~~L----~~~~~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 10 VLACPKDKGPL----RYLESEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp CCBCTTTCCBC----EEETTTTEEEETTTTEEEEEETTE
T ss_pred HhCCCCCCCcC----eEeCCCCEEEcCCCCccccCCCCE
Confidence 45899999952 222234567899999888888773
No 52
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=45.57 E-value=5.5 Score=45.73 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCCccccccccccccCccceeeeccCcc---ccccCcccc
Q 006345 545 DDPFGESRRIACKKCNNFHVWIETKKSKA---SARWCQECN 582 (649)
Q Consensus 545 E~~f~isr~V~C~kC~GtG~~~~T~ks~s---~artC~~C~ 582 (649)
+..+.+.+...|..|+|+| .+.+. .+.+|+.|+
T Consensus 183 ~k~i~v~~~~~C~tCHGsG-----A~~Gt~~~~~~tC~tCH 218 (669)
T 3pmq_A 183 AYTRNLVSIDTCNSCHSNL-----AFHGGRYNQVETCVTCH 218 (669)
T ss_dssp CCCCCCCCSHHHHHHHSSC-----CTTTTTSCSSSCSTTTS
T ss_pred ceEEEeccCCcCCCCCCCC-----CcCCccCcCCccCCCCC
Confidence 4556778899999999997 45555 688999999
No 53
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=42.48 E-value=18 Score=37.35 Aligned_cols=31 Identities=16% Similarity=0.490 Sum_probs=20.2
Q ss_pred ccccccCccceeeeccCccccccCccccccc
Q 006345 555 ACKKCNNFHVWIETKKSKASARWCQECNDYH 585 (649)
Q Consensus 555 ~C~kC~GtG~~~~T~ks~s~artC~~C~~~h 585 (649)
+|+.|...=..+.-+..+..+-+|+.|+..|
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 8999987643322222356788999998544
No 54
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=39.07 E-value=18 Score=36.70 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=17.0
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
.+|+.|.+.=.. ..-.+...-+|+.|+
T Consensus 243 ~pC~~CG~~I~~--~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQK--IKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEE--EEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeE--EEECCCceEECCCCC
Confidence 579999775211 122345677899887
No 55
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=28.88 E-value=43 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 006345 289 LVVVALSGTILLWLYG 304 (649)
Q Consensus 289 ~~iv~~~~~~ilw~~~ 304 (649)
+.++++.+.|++|++.
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555666666543
No 56
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=28.70 E-value=3.2e+02 Score=27.58 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHhhhhhhHHHHHHhhhhhcccchhhHHHHHHHHHH-------hhhhhhh-------hhhhhHHHHhhhhhhhHHHH
Q 006345 298 ILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYS-------IYCAWTY-------VGWLGLLLALNLSFVSSDAL 363 (649)
Q Consensus 298 ~ilw~~~~fw~t~~~~i~gg~~f~~~h~r~~~~i~~~y~-------iy~~~~~-------~gwlg~~ls~NlaflS~diL 363 (649)
++.|+...+.+.++-.++.+.+...++.+....+..+-. .|..-.+ .|-.|+.++.-++.+..-++
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~ 438 (460)
T 3mkt_A 359 LLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALM 438 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHH
Confidence 344444555555666667788888888777655543311 1222222 45556666666665544333
No 57
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=28.29 E-value=43 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=17.3
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
.+|+.|+..=.. ..-.+....+|+.|+
T Consensus 246 ~pC~~CG~~I~~--~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEK--TVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEE--EEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEE--EEECCCCeEECCCCC
Confidence 479999775211 122345678899996
No 58
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.55 E-value=44 Score=33.82 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=16.9
Q ss_pred cccccccCccceeeeccCccccccCcccc
Q 006345 554 IACKKCNNFHVWIETKKSKASARWCQECN 582 (649)
Q Consensus 554 V~C~kC~GtG~~~~T~ks~s~artC~~C~ 582 (649)
.+|+.|.+.=.. ..-.+...-+|+.|+
T Consensus 241 ~pC~~CG~~I~~--~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVA--TKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEE--EEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeE--EEECCCceEECCCCC
Confidence 579999776211 122345677888886
No 59
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.02 E-value=21 Score=28.23 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=22.9
Q ss_pred ccccccccCccceeeeccCccccccCc--cccccccccCC
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQ--ECNDYHQAKDG 590 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~--~C~~~h~AkdG 590 (649)
-..|+.|+|.=. .. .....|+ .|+...|++||
T Consensus 10 iL~CP~c~~~L~----~~--~~~L~C~~~~c~~~YPI~dG 43 (56)
T 2kpi_A 10 ILACPACHAPLE----ER--DAELICTGQDCGLAYPVRDG 43 (56)
T ss_dssp SCCCSSSCSCEE----EE--TTEEEECSSSCCCEEEEETT
T ss_pred heeCCCCCCcce----ec--CCEEEcCCcCCCcEEeeECC
Confidence 358999999621 11 1567899 99988888776
No 60
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=22.32 E-value=17 Score=39.75 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=16.7
Q ss_pred ecccccccCceEecccccccCccc
Q 006345 611 VPCAYVCANSRIYNATDWYICQVN 634 (649)
Q Consensus 611 ~pC~y~C~Gsgi~dkt~Ca~CqG~ 634 (649)
..|. .|...-......|..|+-.
T Consensus 66 ~~C~-~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 66 VACT-SCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CCGG-GTCCSSSCBCCGGGGTCCC
T ss_pred CCcc-ccCccccCCCccccccChh
Confidence 4788 7986544566789999864
No 61
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.31 E-value=28 Score=36.23 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=16.9
Q ss_pred cccccccccCccceee-e--c-cCccccccCccc
Q 006345 552 RRIACKKCNNFHVWIE-T--K-KSKASARWCQEC 581 (649)
Q Consensus 552 r~V~C~kC~GtG~~~~-T--~-ks~s~artC~~C 581 (649)
....||.|++....-. . + ..+.+-..|..|
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C 214 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLC 214 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTT
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCC
Confidence 4557888887753211 1 1 234456678888
No 62
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.49 E-value=34 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=23.8
Q ss_pred ccccccccCccceeeeccCccccccCccccccccccCCCeE
Q 006345 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGW 593 (649)
Q Consensus 553 ~V~C~kC~GtG~~~~T~ks~s~artC~~C~~~h~AkdG~G~ 593 (649)
-+.|+ |.-. |+.. ...+...|+ |+..|+.+.-+-+
T Consensus 4 vv~C~-C~~~--~~~~--~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 4 IFRCD-CGRA--LYSR--EGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEEET-TSCC--EEEE--TTCSEEEET-TTEEEECCSSSCB
T ss_pred EEECC-CCCE--EEEc--CCCcEEECC-CCCeeeeceEEEE
Confidence 36798 9775 3333 367788999 9977777655544
Done!