BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006346
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus
GN=Xpc PE=1 SV=2
Length = 930
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/551 (30%), Positives = 252/551 (45%), Gaps = 85/551 (15%)
Query: 17 SCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEAC 76
SC + E E +G P + + + ++S S + +PSS E C
Sbjct: 395 SCSEGEEA-EQKVQGRPHARKRRVAAKVSYKEESESDGAGSGSDFEPSSGEGQHSSDEDC 453
Query: 77 HPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKI 136
P + Q KR Q A S + T + + C + SS+ KR KK+
Sbjct: 454 EPGPRKQ--KRAS----APQRTKAGSKSASKTQRGSQC-EPSSFPEASSSSSGCKRGKKV 506
Query: 137 ESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAA 196
SG + + RK W EVYC + KWV VD + ++ Q V
Sbjct: 507 SSG---------AEEMADRKPAGVDQWLEVYCEPQ---AKWVCVDCVHGVVG--QPVACY 552
Query: 197 AAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGG 256
A K + Y+V G W R ++R + AW
Sbjct: 553 KYATK-PMTYVVGIDSDG-----------WVRDVTQRYDPAW------------------ 582
Query: 257 MTQMEKRHVNASNILEALKTSNYLYRDSFPNHVSLYGDSDLNVESSAKDSFVADRNSLED 316
MT K V+A E L+ YR S + +R ED
Sbjct: 583 MTATRKCRVDAEWWAETLRP----YR-----------------------SLLTEREKKED 615
Query: 317 MELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQ 375
E + + L +PLPT+ YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV
Sbjct: 616 QEFQAKHLDQPLPTSISTYKNHPLYALKRHLLKFQAIYPETAAVLGYCRGEAVYSRDCVH 675
Query: 376 TLKTKERWLREALQVKANEVPVKVIKN-SSKSKKGQDFEPEDYDEVDARGNIELYGKWQL 434
TL +++ WL++A V+ EVP K++K S++++K + EP+ +D D + LYG WQ
Sbjct: 676 TLHSRDTWLKQARVVRLGEVPYKMVKGFSNRARKARLSEPQLHDHND----LGLYGHWQT 731
Query: 435 EPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFE 494
E + P AV+G VPRNE G V ++ +P G V + LP + VA++L ID A+ GF+
Sbjct: 732 EEYQPPIAVDGKVPRNEFGNVYLFLPSMMPVGCVQMTLPNLNRVARKLGIDCVQAITGFD 791
Query: 495 FRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTR 554
F G PV DG +VC EF+D +L A+ E+ E +EK+++E +A W L+ ++ R
Sbjct: 792 FHGGYCHPVTDGYIVCEEFRDVLLAAWENEQAIIEKKEKEKKEKRALGNWKLLVRGLLIR 851
Query: 555 QRLNNCYGNNS 565
+RL YG S
Sbjct: 852 ERLKLRYGAKS 862
>sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC
PE=1 SV=4
Length = 940
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 139/406 (34%), Positives = 203/406 (50%), Gaps = 70/406 (17%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRR 221
W EV+C E KWV VD + ++ Q + A K + Y+V G +DVT+R
Sbjct: 531 WLEVFCEQEE---KWVCVDCVHGVVG--QPLTCYKYATK-PMTYVVGIDSDGWVRDVTQR 584
Query: 222 YCMKWYRIASKRVNSAWWDAVLAPLRELESGATGGMTQMEKRHVNASNILEALKTSNYLY 281
Y W MT K V+A E L+ Y
Sbjct: 585 YDPVW------------------------------MTVTRKCRVDAEWWAETLRP----Y 610
Query: 282 RDSFPNHVSLYGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLY 341
+ F DR ED+E + + + +PLPT YKNH LY
Sbjct: 611 QSPF-----------------------MDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLY 647
Query: 342 VIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVI 400
++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL++A V+ EVP K++
Sbjct: 648 ALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMV 707
Query: 401 KN-SSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWS 459
K S++++K + EP+ +E D + L+G WQ E + P AV+G VPRNE G V ++
Sbjct: 708 KGFSNRARKARLAEPQLREEND----LGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFL 763
Query: 460 EKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILE 519
+P G V L LP ++ VA++L+ID A+ GF+F G S PV DG +VC EFKD +L
Sbjct: 764 PSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLT 823
Query: 520 AYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYGNNS 565
A+ E+ E +EK+++E +A W L ++ R+RL YG S
Sbjct: 824 AWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYGPKS 869
>sp|Q24595|XPC_DROME DNA repair protein complementing XP-C cells homolog OS=Drosophila
melanogaster GN=mus210 PE=1 SV=2
Length = 1293
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 189/411 (45%), Gaps = 76/411 (18%)
Query: 155 RKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQK-VEAAAAACKTSLRYIVAFAGC 213
RK A W EV+ E +W+ +D + G+ V+ L Y+ AF
Sbjct: 953 RKTDASDMWVEVWSDVEE---QWICID----LFKGKLHCVDTIRKNATPGLAYVFAFQDD 1005
Query: 214 GA-KDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGGMTQMEKRHVNASNIL 271
+ KDVT RYC W K RV AW D +AP + + KR + + L
Sbjct: 1006 QSLKDVTARYCASWSTTVRKARVEKAWLDETIAPY----------LGRRTKRDITEDDQL 1055
Query: 272 EALKTSNYLYRDSFPNHVSLYGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTN 331
+ + L P +S +
Sbjct: 1056 RRIHSDKPL-----PKSISEF--------------------------------------- 1071
Query: 332 QQAYKNHQLYVIERWLNKYQILY-PKGPILGFCSGHAVYPRSCVQTLKTKERWLREALQV 390
K+H LYV+ER L K+Q LY P P LGF G AVY R CV L ++E WL+ A V
Sbjct: 1072 ----KDHPLYVLERHLLKFQGLYPPDAPTLGFIRGEAVYSRDCVHLLHSREIWLKSARVV 1127
Query: 391 KANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRN 450
K E P KV+K K + +D +E++G WQ + P+A NGIVPRN
Sbjct: 1128 KLGEQPYKVVKARPKWDRLTRTVIKDQP-------LEIFGYWQTQEYEPPTAENGIVPRN 1180
Query: 451 ERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVC 510
G V+++ + LP TVHLRLP + + K+L ID A A+VGF+F G P++DG +VC
Sbjct: 1181 AYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFHQGACHPMYDGFIVC 1240
Query: 511 AEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCY 561
EF++ + A+ E+++ + +E+++ E + W +L+ ++ R+RL Y
Sbjct: 1241 EEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIKGLLIRERLKKKY 1291
>sp|Q10445|RHP41_SCHPO DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp41 PE=3 SV=1
Length = 638
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 172/416 (41%), Gaps = 92/416 (22%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDAAN--AIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AK 216
P++W E + KWV VD ++I ++ E A++ + Y+ A G K
Sbjct: 302 PVFWVEAFNKA---MQKWVCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVK 358
Query: 217 DVTRRYCMKWYRIASKRV-----NSAWWDAVLAPLRELESGATGGMTQMEKRHVNASNIL 271
DVTR+YC+ +Y+I RV AW + + + + +
Sbjct: 359 DVTRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKIGKP---------------------- 396
Query: 272 EALKTSNYLYRDSFPNHVSLYGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTN 331
RD Y D D ++ED EL +E +P N
Sbjct: 397 ----------RD-------FYNDMD----------------AIEDAELLRLEQSEGIPRN 423
Query: 332 QQAYKNHQLYVIERWLNKYQILYPK---GPILGFCSGHAVYPRSCVQTLKTKERWLREAL 388
Q K+H L+V+ER L K Q + G I VYPR V + E W R+
Sbjct: 424 IQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGR 483
Query: 389 QVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVP 448
+K P+K +KN K + LY + + V IVP
Sbjct: 484 IIKPGAQPLKHVKNGDKV-------------------LPLYDEEATQLYTPKPVVANIVP 524
Query: 449 RNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIV 508
+N G +D++ LP G H R + AK LEID A A+VGF+F+ S P +G+V
Sbjct: 525 KNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVGFDFQRKYSKPKLEGVV 584
Query: 509 VCAEFKDTILEAYAEE--EEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYG 562
V +++ I + AEE +E++EAE + R+ W +L++ + RQR+ YG
Sbjct: 585 VSKRYEEAI-DLIAEEIDQEEKEAEARNVRKT-CLLLWKRLITGLRIRQRVFEEYG 638
>sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp42 PE=3 SV=1
Length = 686
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 182/423 (43%), Gaps = 79/423 (18%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDAA--NAIIDGEQ---KVEAAAAACKTSLRYIVAFAG-- 212
P++W E+Y E KW+ VDA N + + + + A A K IVA
Sbjct: 323 PIFWTEIYDQSEK---KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDND 379
Query: 213 CGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGGMTQMEKRHVNASNILE 272
AKDVT RY D + L+++ RHV+ ++
Sbjct: 380 LYAKDVTLRYT----------------DYQSSRLKKI-------------RHVSFAD--- 407
Query: 273 ALKTSNYLYRDSFPNHVSLYGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPL--PT 330
F + +++G + KD+ + E+ ELE++ P+ P
Sbjct: 408 ----------KYFDFYKAIFG----QLAKRNKDA----EDIYEEKELESKV---PIREPK 446
Query: 331 NQQAYKNHQLYVIERWLNKYQILYPKG-PILGFCSGHA-------VYPRSCVQTLKTKER 382
+ +KNH +V+ R L + + L P P+ G+ VY R V KT E
Sbjct: 447 SFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFGNGKKATSEEVYLRKDVVICKTPEN 506
Query: 383 WLREALQVKANEVPVKVIKNSSKS---KKGQDFEPEDYDEVDARGNIELYGKWQLEPLRL 439
+ +E +K E P K++K + + K+ +F + +E +G LY Q E
Sbjct: 507 YHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPVLQG---LYSSDQTELYVP 563
Query: 440 PSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGR 499
P +GI+P+N G +D + E +P G HL + +AK+L ID A A+ GFEFR R
Sbjct: 564 PPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIAKIAKKLNIDYADAVTGFEFRKHR 623
Query: 500 STPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNN 559
+ PV GI+V E + E + E E+ R +++ + +W LL+++ R+R+
Sbjct: 624 AIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKERKIIYGQWKHLLNALRIRKRIEE 683
Query: 560 CYG 562
Y
Sbjct: 684 QYA 686
>sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD4 PE=1 SV=3
Length = 754
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 127/281 (45%), Gaps = 20/281 (7%)
Query: 312 NSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSGHA---- 367
+ ED R +E +P + Q KNH YV+E+ + + QI+ P G+ H
Sbjct: 418 DDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGK 477
Query: 368 ---VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDE-VDAR 423
VY + + LK+ +W +K KVIK + KG E E+ DE + +
Sbjct: 478 VLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPKG---EAEEEDERLYSF 534
Query: 424 GNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLE 483
+ ELY + PL ++ +G + +N G ++V++ +P + P A+ L
Sbjct: 535 EDTELY----IPPL---ASASGEITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLG 587
Query: 484 IDSAPAMVGFEFRNGRST-PVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATS 542
++ APA+ F+F G + PV GIVV ++ I A E +E + +K A
Sbjct: 588 VEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGIEFIQEDDNRKEHLLGALE 647
Query: 543 RWYQLLSSIVTRQRLNNCYGNNSTSQSS-SNFQNVKKTNSN 582
W LL + R +LN+ YG + + + + QN+ + N
Sbjct: 648 SWNTLLLKLRIRSKLNSTYGKIAEEEPNVTKEQNIADNHDN 688
>sp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Oryza sativa subsp. japonica GN=PNG1 PE=2 SV=1
Length = 447
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W E + NL G+W+H+D + D E L Y++A + G +DVT+RY
Sbjct: 296 WTECF---SNLYGRWMHLDPCEGVYDNPLLYEKG---WNKKLDYVIAISKDGVRDVTKRY 349
Query: 223 CMKWYRIASKRVNSAWWDAVLAPLREL----ESG-ATGGMTQMEKRHVNASNILEALKTS 277
KW+ + S+R+ ++ D V A L + SG + G+T +E R S E L +
Sbjct: 350 TRKWHEVLSRRIITS-EDTVSAILSSITGKYRSGLSIDGLTALENRDKKES---EELSKA 405
Query: 278 NYLYRDSFPNHVSLYGDSDLNVE 300
YL D+ +SL G +VE
Sbjct: 406 AYLEVDT---SISLPGRQSGSVE 425
>sp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1
Length = 721
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W E Y +W+H+D + D E L Y++A + G DVT+RY
Sbjct: 280 WTECYSHS---LKRWIHLDPCEGVYDKPMLYEKG---WNKKLNYVIAISKDGVCDVTKRY 333
Query: 223 CMKWYRIASKR 233
KW+ + S+R
Sbjct: 334 TKKWHEVLSRR 344
>sp|Q8J2R3|PNG1_GIBMO Protein PNG1 OS=Gibberella moniliformis GN=PNG1 PE=3 SV=1
Length = 450
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +WVHVDA D + + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLL---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 223 CMK 225
K
Sbjct: 326 VRK 328
>sp|Q4IR87|PNG1_GIBZE Protein PNG1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=PNG1 PE=3 SV=1
Length = 451
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +WVHVDA D + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLY---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 223 CMK 225
K
Sbjct: 326 VRK 328
>sp|Q2UPS5|PNG1_ASPOR Protein png1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=png1 PE=3 SV=1
Length = 457
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W E+Y + +WVHVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 290 WTEIYSEHQR---RWVHVDACEGAWD-QPRLYAEGWGRKMS--YCIAFSIDGATDVTRRY 343
>sp|Q5B6P3|PNG1_EMENI Protein PNG1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=png1 PE=3 SV=1
Length = 441
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+HVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 275 WTEVYSEHQK---RWIHVDACEETWD-QPRLYAEGWGRKIS--YCIAFSIDGATDVTRRY 328
>sp|Q4WHW1|PNG1_ASPFU Protein png1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=png1 PE=3 SV=1
Length = 455
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +WVHVDA D + L Y +AF+ GA DVTRRY
Sbjct: 288 WTEVYSEHQR---RWVHVDACEGAWD---QPRLYTEGWGRKLSYCIAFSIDGATDVTRRY 341
>sp|Q75D29|PNG1_ASHGO Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PNG1 PE=3 SV=1
Length = 350
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY N +WVHVD+ D + + ++ Y++AF+ KDV+RRY
Sbjct: 212 WCEVY---SNALKRWVHVDSCEKSFD---EPHIYSVNWNKAMSYVIAFSNRSVKDVSRRY 265
Query: 223 CMK 225
++
Sbjct: 266 IVR 268
>sp|Q7SI01|PNG1_NEUCR Protein png-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=png-1 PE=3 SV=1
Length = 382
Score = 36.6 bits (83), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W E+Y + +WVHVD+ D + Y++AF+ GA DVTRRY
Sbjct: 207 WTEIYSEHQQ---RWVHVDSCEEAWDMPHMYYKNWG---KKMSYVIAFSREGAVDVTRRY 260
>sp|Q5XI55|NGLY1_RAT Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2
Length = 651
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 223 CMKWYRIASKR 233
K + S+R
Sbjct: 389 SCKHEEVMSRR 399
>sp|Q6CAX5|PNG1_YARLI Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNG1
PE=3 SV=1
Length = 356
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W+EVY +W+H D+ + + + Y+V F+G G DVTRRY
Sbjct: 218 WSEVYSERRK---EWIHTDSCEEAWNSPT---IYSQGWGKKMSYVVGFSGDGVTDVTRRY 271
Query: 223 CMK 225
K
Sbjct: 272 VRK 274
>sp|Q9JI78|NGLY1_MOUSE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus
musculus GN=Ngly1 PE=1 SV=2
Length = 651
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 223 CMKWYRIASKR 233
K + S+R
Sbjct: 389 SCKHDEVMSRR 399
>sp|Q5WNE3|NGLY1_CAEBR Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1
Length = 602
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY E +W+HVD +D + K L+Y +A+ DVT RY
Sbjct: 277 WNEVYLKKEQ---RWIHVDPCENTMD---RPLLYTRGWKKQLKYCIAYGHDHVTDVTWRY 330
Query: 223 CMKWYRIASK-RVNSAWWDAVLAPLRELESGATGGMTQMEKRHVNASNILEAL 274
++ ++ RV + L +L + G T+ KR + + E +
Sbjct: 331 VFDSKKLVTQERVRQGVLENFLG---KLNARQMAGATEERKRELAVRRVCELM 380
>sp|Q7KRR5|NGLY1_DROME Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Drosophila melanogaster GN=Pngl PE=1 SV=1
Length = 631
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+HVD + +ID + K + YI+A++ +DVT RY
Sbjct: 325 WTEVYSEAQ---MRWLHVDPSENVIDSPLMYQ---HGWKRHIDYILAYSRDDIQDVTWRY 378
>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3
Length = 3507
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 27/118 (22%)
Query: 296 DLNVESSAKDSFVADRNSL----------EDMELETRALTEPLPTNQQAYKNHQLYVIER 345
+LN+E +DSF+ D N + E++EL++ A+ T Q + +++ ++
Sbjct: 2072 NLNIE---QDSFLEDLNYIISSGRIPDLFENVELDSIAMKIRYLTEQSGHMDNRQSLLSF 2128
Query: 346 W-------LNKYQILYPKGPILGFCSGHAVYPR---SCVQTLKTKERWLREALQVKAN 393
+ L+ + I+ P+GP F VYP SC T+ ERW EAL + AN
Sbjct: 2129 FQKRIYKNLHIFVIMSPEGP--SFRQNCRVYPSMISSC--TIDWYERWPEEALLIVAN 2182
>sp|Q4R6F3|NGLY1_MACFA Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Macaca fascicularis GN=NGLY1 PE=2 SV=1
Length = 654
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 223 CMKWYRIASKRV 234
K + ++R
Sbjct: 392 SCKHEEVIARRT 403
>sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo
sapiens GN=NGLY1 PE=1 SV=1
Length = 654
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 223 CMKWYRIASKR 233
K + ++R
Sbjct: 392 SCKHEEVIARR 402
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Danio rerio GN=ngly1 PE=2 SV=1
Length = 644
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + +W+H D D E L YI+AF+ DVT RY
Sbjct: 323 WTEVYSQSQR---RWIHCDPCENACDKPLLYEVGWGK---KLSYILAFSKDQVADVTWRY 376
Query: 223 CMKWYRIASKR--VNSAWWDAVLAPL 246
K + S+R V W +L L
Sbjct: 377 SCKHPEVLSRRTQVQETWLLHMLNKL 402
>sp|P91119|PDE5_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-5 OS=Caenorhabditis
elegans GN=pde-5 PE=3 SV=3
Length = 728
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 235 NSAWWDAVLAPLRELESGATGGMTQMEKRHVNAS---------NILEALKTSNYLYRDSF 285
N+A+ + PL + S + ME+ H N + NIL++L + +Y S
Sbjct: 511 NNAYMKTMSTPLASIYSTSV-----MERHHFNQTVTILQQDGHNILKSLSSEDYKKTLSL 565
Query: 286 PNHVSLYGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPL 328
H L D L + AK + + D N+ + E R LT+ +
Sbjct: 566 IKHCILATDLALFFSNKAKLNVILDNNTFDINRQEHRLLTQAV 608
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Gallus gallus GN=NGLY1 PE=2 SV=1
Length = 651
Score = 32.7 bits (73), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 222
W EVY + + +W+H D + D E L Y++AF+ DVT RY
Sbjct: 334 WTEVYSASQK---RWLHCDPCENVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 387
Query: 223 CMKWYRIASKRV 234
K + ++R
Sbjct: 388 SCKHQEVLTRRT 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,175,026
Number of Sequences: 539616
Number of extensions: 10124993
Number of successful extensions: 43236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 41963
Number of HSP's gapped (non-prelim): 1214
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)