Query 006346
Match_columns 649
No_of_seqs 203 out of 430
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_A RAD4, DNA repair protei 100.0 1.7E-93 5.8E-98 790.7 21.2 356 80-525 152-531 (533)
2 1x3z_A Peptide: N-glycanase; h 99.8 2.4E-20 8.1E-25 195.6 6.2 115 84-248 177-291 (335)
3 2f4m_A Peptide N-glycanase; gl 99.6 3.4E-16 1.2E-20 162.4 9.0 117 83-248 135-253 (295)
4 3isr_A Transglutaminase-like e 77.3 2.2 7.7E-05 44.0 5.0 22 159-185 213-234 (293)
5 2d3g_P Ubiquitin interacting m 69.9 2.7 9.4E-05 28.6 2.3 20 91-110 3-22 (26)
6 1gh9_A 8.3 kDa protein (gene M 44.9 6.5 0.00022 32.7 0.9 19 631-649 17-35 (71)
7 2jr7_A DPH3 homolog; DESR1, CS 34.5 16 0.00055 31.7 1.8 25 623-647 11-35 (89)
8 1yop_A KTI11P; zinc finger, me 33.7 15 0.00053 31.4 1.5 25 623-647 11-35 (83)
9 1wge_A Hypothetical protein 26 32.7 22 0.00075 30.4 2.3 26 622-647 17-42 (83)
10 1m45_B IQ2, IQ2 motif from MYO 28.9 60 0.002 21.6 3.3 22 539-560 4-25 (26)
No 1
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=1.7e-93 Score=790.73 Aligned_cols=356 Identities=25% Similarity=0.351 Sum_probs=285.6
Q ss_pred hhhhhhhccCcHHHHHHHHHHHHhhhhhhcccCcc--CccCCCCCCCCCcccchhhhhcccCCCCCCcCCcccccCCCCC
Q 006346 80 EKSQALKRKGDLEFEMQLEMALSATNVATSKSNIC--SDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKV 157 (649)
Q Consensus 80 ~~~~~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~ 157 (649)
.-....+|+|+-++-+||=.|| +++.+-.++. +-++.+........+ ++.. .....++
T Consensus 152 f~~~~~~~~Gs~d~~AqlF~aL---lRalG~~aRlV~SLqP~~f~~~k~~~~-------------~~k~----~~~~~~~ 211 (533)
T 2qsf_A 152 FLRAVSKGHGDPDISVQGFVAM---LRACNVNARLIMSCQPPDFTNMKIDTS-------------LNGN----NAYKDMV 211 (533)
T ss_dssp HHHHHHHTEECHHHHHHHHHHH---HHHTTCCEEEEEEECCCCTTCCBSCCC-------------CC-------CHHHHT
T ss_pred HHHHHHhcCCChhHHHHHHHHH---HHHCCCceEEEeccccccccccccccC-------------cccC----Ccccccc
Confidence 3456788999999877776655 4556655552 323333321111000 0000 0112457
Q ss_pred CCCceEEEEEeCCCCCCCceEEEecccC-cc---cccchhhhhH--hhcCCCeeEEEEEcCCC-cccchhhhHhHHHH-h
Q 006346 158 GAPLYWAEVYCSGENLTGKWVHVDAANA-II---DGEQKVEAAA--AACKTSLRYIVAFAGCG-AKDVTRRYCMKWYR-I 229 (649)
Q Consensus 158 ~~P~fWvEV~~~~~~~~~rWI~VDPi~~-~V---d~~~~~Ep~~--~~~~~~msYVVAfd~dG-akDVTrRYa~~~~~-~ 229 (649)
.+|+||+|||++. .++||||||+++ ++ +.+.+|||.. .++.++|+|||||+.|| |+|||+||+.+|+. +
T Consensus 212 ~~P~~W~EV~s~~---~~rWi~VDp~~~~~id~~~~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k~ 288 (533)
T 2qsf_A 212 KYPIFWCEVWDKF---SKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKV 288 (533)
T ss_dssp TSCSEEEEEEETT---TTEEEEEESSSSCEEECCSSCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCCC
T ss_pred CCCeEEEEEEEcC---CCeEEEEeccccccccccccccccccccccccccCceeEEEEEcCCCceEecchhhhhchhhhh
Confidence 8999999999864 689999999985 44 4678899853 25789999999999986 99999999999984 4
Q ss_pred hhccCC-----HHHHHHHHHhhhhcccCcCCCCcchhhhccchhhhHHHhhhccccccCCCCCcccccCCCCcccccccc
Q 006346 230 ASKRVN-----SAWWDAVLAPLRELESGATGGMTQMEKRHVNASNILEALKTSNYLYRDSFPNHVSLYGDSDLNVESSAK 304 (649)
Q Consensus 230 ~rkRv~-----~~Ww~~~L~~l~~~~sga~~g~~~~~kr~~~~~~i~~~~~~~~~~~~d~f~~~v~~~g~~~~~~~~~~~ 304 (649)
++.|++ ..||..+|++|++.
T Consensus 289 rr~Ri~~~~~~~~W~~~~L~~~~~~------------------------------------------------------- 313 (533)
T 2qsf_A 289 RKRRITKDDFGEKWFRKVITALHHR------------------------------------------------------- 313 (533)
T ss_dssp GGGSGGGSHHHHHHHHHHHHHHCCS-------------------------------------------------------
T ss_pred heeeecCCcchHHHHHHHHHHHhcC-------------------------------------------------------
Confidence 556764 78999999988631
Q ss_pred CcccccCCchHHHHHHHHhccCCCCcChHhhhcCCchhhhhhhccccccCCCCCcceeecc-------eeeeecCCcccc
Q 006346 305 DSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSG-------HAVYPRSCVQTL 377 (649)
Q Consensus 305 ~~~~~~rd~~Ed~EL~~~~~~E~mPtsi~~fKnHP~YvLEr~Lkk~EvI~P~~~~~G~~~G-------EpVY~RsdV~~L 377 (649)
...++|..||+||+.+..+||||+|+++|||||+|||||||++||+|||+++++|+|+| ||||+|+||++|
T Consensus 314 --~~~~~d~~Ed~el~~~~~~e~~P~s~~~fK~HP~yvLer~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~~V~~l 391 (533)
T 2qsf_A 314 --KRTKIDDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRDIADL 391 (533)
T ss_dssp --CCCHHHHHHHHHHHHHHHHSCCCSSTGGGTTCSSEEEGGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGGGEEEC
T ss_pred --CccccchhHHHHHHHHHhcCCCCccHHHHcCCcHhhhhhhhccceeeCCCCceeeEEecCcCCCcccceeehhhhhee
Confidence 01245778999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred ccHHHHHHhcccccCCCcccceeccCCCCCCCCCCCCCCccccccccccccccccccccCCCCCC-CCCcccCCCCCceE
Q 006346 378 KTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSA-VNGIVPRNERGQVD 456 (649)
Q Consensus 378 kS~e~W~r~GR~VK~gEqPlK~Vk~~~~~~k~~~~e~~d~~~~~~~~~~~LYg~wQTe~y~pPp~-vdG~VPkN~yGNID 456 (649)
||+++|+++||+||+||+|+|+|+.++.+.. .++ ...+++|||+||||+|+|||+ +||+||||+|||||
T Consensus 392 ~S~e~W~~~gR~vk~ge~P~K~v~~r~~~~~----~~~------~~~~~~Ly~~~QTe~y~Pp~~~~dG~VPkN~yGNvd 461 (533)
T 2qsf_A 392 KSARQWYMNGRILKTGSRCKKVIKRTVGRPK----GEA------EEEDERLYSFEDTELYIPPLASASGEITKNTFGNIE 461 (533)
T ss_dssp BCHHHHHTTTEEECSSCCCSEEECC----------------------CEEEBCGGGEEECCCCCCCTTCCCCCCTTSCEE
T ss_pred ecHHHHHHcCCccCCCCeeeeEEecccCCcc----ccc------ccccccccCHHhCccccCCCCccCCcccccCCCCEE
Confidence 9999999999999999999999997653211 111 125689999999999999999 99999999999999
Q ss_pred eecCCCCCCceEEecCccHHHHHHHcCCCEeeeeeeeeecCC-eeeeeEceEEEccccHHHHHHHHHHHH
Q 006346 457 VWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNG-RSTPVFDGIVVCAEFKDTILEAYAEEE 525 (649)
Q Consensus 457 lf~psMlP~G~VHL~~~~~~kvAkkLgIDyA~AVtGFeFk~G-~a~PvidGIVV~~E~~e~l~~a~~e~~ 525 (649)
||+|+|||+|||||++++++++||+||||||+|||||+|++| +++|||+|||||+||+++|++||++.+
T Consensus 462 ~~~p~m~P~G~vhi~~~~~~~~ar~L~Idya~Av~GFef~~g~~~~Pv~~GiVV~~e~~~~l~~a~~~~~ 531 (533)
T 2qsf_A 462 VFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGIE 531 (533)
T ss_dssp CSSGGGSCTTEEEEECTTHHHHHHHTTCCCEEEEEEECC------CEEEEEEEEETTSHHHHHHHHHTGG
T ss_pred eccCCCCCCCcEEecCccHHHHHHHhCCCeeeeeeceeeCCCCcceEEeCeEEEehHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999976 579999999999999999999997543
No 2
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=99.80 E-value=2.4e-20 Score=195.61 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=95.7
Q ss_pred hhhccCcHHHHHHHHHHHHhhhhhhcccCccCccCCCCCCCCCcccchhhhhcccCCCCCCcCCcccccCCCCCCCCceE
Q 006346 84 ALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYW 163 (649)
Q Consensus 84 ~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~~P~fW 163 (649)
-..|+|.-. ..|.++.|.+++++-.+ |-+.. ..+|+|
T Consensus 177 l~tr~G~C~---e~A~lF~~llRalGi~a---------------------R~V~~-------------------~~~H~W 213 (335)
T 1x3z_A 177 LETRKGRCG---EWCNLFTLILKSFGLDV---------------------RYVWN-------------------REDHVW 213 (335)
T ss_dssp HHHCEECHH---HHHHHHHHHHHTTTCCE---------------------EEEEE-------------------TTTEEE
T ss_pred HHhCCcChH---HHHHHHHHHHHHCCCCe---------------------EEEec-------------------CCCcEE
Confidence 345778766 57888888899888333 21100 267999
Q ss_pred EEEEeCCCCCCCceEEEecccCcccccchhhhhHhhcCCCeeEEEEEcCCCcccchhhhHhHHHHhhhccCCHHHHHHHH
Q 006346 164 AEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWDAVL 243 (649)
Q Consensus 164 vEV~~~~~~~~~rWI~VDPi~~~Vd~~~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRYa~~~~~~~rkRv~~~Ww~~~L 243 (649)
+|||+++ .++||||||+++++++|..||+ +|+++|+|||||+.|||+|||+||+.+ +.++|.|+++.||..+|
T Consensus 214 ~EV~~~~---~~rWv~vDp~~~~id~P~~ye~---gw~k~msYVIAFs~dgv~DVT~RY~~~-~~lrR~rv~e~wl~~~L 286 (335)
T 1x3z_A 214 CEYFSNF---LNRWVHVDSCEQSFDQPYIYSI---NWNKKMSYCIAFGKDGVVDVSKRYILQ-NELPRDQIKEEDLKFLC 286 (335)
T ss_dssp EEEEETT---TTEEEEEETTTTEESCTHHHHT---TSCCCBCCEEEEETTEEEECHHHHCSS-SBCCCCSSCHHHHHHHH
T ss_pred EEEEECC---CCCEEEECCCCCccCCCceeec---CCCCceEEEEEEcCCCCEECHHHhCcC-CccccccCCHHHHHHHH
Confidence 9999974 4799999999999999999985 689999999999999999999999999 76667899999999999
Q ss_pred Hhhhh
Q 006346 244 APLRE 248 (649)
Q Consensus 244 ~~l~~ 248 (649)
.+|+.
T Consensus 287 ~~l~~ 291 (335)
T 1x3z_A 287 QFITK 291 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=99.63 E-value=3.4e-16 Score=162.40 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=95.7
Q ss_pred hhhhccCcHHHHHHHHHHHHhhhhhhcccCccCccCCCCCCCCCcccchhhhhcccCCCCCCcCCcccccCCCCCCCCce
Q 006346 83 QALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLY 162 (649)
Q Consensus 83 ~~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~~P~f 162 (649)
--..|+|.-. ..|..+.|.+++++-.+ |-+.. . .+|.
T Consensus 135 ~l~~r~G~C~---d~A~lf~al~Ra~GIpA---------------------R~V~G-------------y------~~Ha 171 (295)
T 2f4m_A 135 LLETRCGRCG---EWANCFTLCCRALGFEA---------------------RYVWD-------------Y------TDHV 171 (295)
T ss_dssp HHHHCEESHH---HHHHHHHHHHHHTTCCE---------------------EEEEE-------------T------TTEE
T ss_pred HHHcCCEeeH---HHHHHHHHHHHHCCCCE---------------------EEEcC-------------C------CCEE
Confidence 3456889887 67888888888888332 21100 1 6899
Q ss_pred EEEEEeCCCCCCCceEEEecccCcccccchhhhhHhhcCCCeeEEEEEcCCCcccchhhhHhHHHHh--hhccCCHHHHH
Q 006346 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRI--ASKRVNSAWWD 240 (649)
Q Consensus 163 WvEV~~~~~~~~~rWI~VDPi~~~Vd~~~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRYa~~~~~~--~rkRv~~~Ww~ 240 (649)
|+|||+++ .++||+|||+.++++.|..+++ +|.+.|+|||||+.||++|||+||+.+|..+ +|.|+++.||.
T Consensus 172 W~Evy~~g---~~gWv~~Dpt~~~~~~p~~~e~---gwgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e~wl~ 245 (295)
T 2f4m_A 172 WTEVYSPS---QQRWLHCDACEDVCDKPLLYEI---GWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLR 245 (295)
T ss_dssp EEEEEETT---TTEEEEEETTTTEESCGGGTTT---TSCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCHHHHH
T ss_pred EEEEEECC---CCeEEEEeCCcCccCCCceEee---ccCCCceEEEEECCccCccchhhcccchHHHHhhccCCCHHHHH
Confidence 99999974 2599999999999999998875 5889999999999999999999999999975 45678999999
Q ss_pred HHHHhhhh
Q 006346 241 AVLAPLRE 248 (649)
Q Consensus 241 ~~L~~l~~ 248 (649)
.+|.+|+.
T Consensus 246 ~~l~~l~~ 253 (295)
T 2f4m_A 246 ETINGLNK 253 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=77.29 E-value=2.2 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.6
Q ss_pred CCceEEEEEeCCCCCCCceEEEecccC
Q 006346 159 APLYWAEVYCSGENLTGKWVHVDAANA 185 (649)
Q Consensus 159 ~P~fWvEV~~~~~~~~~rWI~VDPi~~ 185 (649)
..|-|+|||.. +.||.+||..+
T Consensus 213 ~~HAW~Evyl~-----ggWv~~DpT~~ 234 (293)
T 3isr_A 213 DFHACFEAYIG-----GNWIIFDATRL 234 (293)
T ss_dssp CEEEEEEEEET-----TEEEEECTTCC
T ss_pred CeEEEEEEEEC-----CcEEEEECCCC
Confidence 45899999985 48999999875
No 5
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=69.94 E-value=2.7 Score=28.55 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhhhhcc
Q 006346 91 LEFEMQLEMALSATNVATSK 110 (649)
Q Consensus 91 ~~~e~q~~ma~~a~~~~~~~ 110 (649)
.|.|+|||.|||-+-+++.+
T Consensus 3 EeEEl~LAlAlS~sEae~~~ 22 (26)
T 2d3g_P 3 EEEELQLALALSQSEAEEKX 22 (26)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 47789999999988887764
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=44.89 E-value=6.5 Score=32.74 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=16.3
Q ss_pred ccceecccCCCceEEEeeC
Q 006346 631 NSVTTKRCHCGFTIQVEEL 649 (649)
Q Consensus 631 t~~~tkrc~cg~~iqve~~ 649 (649)
....|+.|+||-.++|+++
T Consensus 17 ~~~kT~~C~CG~~~~~~k~ 35 (71)
T 1gh9_A 17 EGAKTRKCVCGRTVNVKDR 35 (71)
T ss_dssp TTCSEEEETTTEEEECCSS
T ss_pred CCCcEEECCCCCeeeeceE
Confidence 3678999999999999875
No 7
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=34.48 E-value=16 Score=31.72 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=21.1
Q ss_pred cccCccccccceecccCCCceEEEe
Q 006346 623 EDQSFDEENSVTTKRCHCGFTIQVE 647 (649)
Q Consensus 623 ~~~sfdeet~~~tkrc~cg~~iqve 647 (649)
||-.||+++.+++..|+||=..+|.
T Consensus 11 eDm~~de~~~~y~ypCrCGd~F~It 35 (89)
T 2jr7_A 11 EDFQYDEDSETYFYPCPCGDNFSIT 35 (89)
T ss_dssp TTSEEETTTTEEEEECTTSSEEEEE
T ss_pred HHcEEcCCCCEEEEcCCCCCEEEEC
Confidence 4688999999999999999776654
No 8
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=33.69 E-value=15 Score=31.37 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=20.4
Q ss_pred cccCccccccceecccCCCceEEEe
Q 006346 623 EDQSFDEENSVTTKRCHCGFTIQVE 647 (649)
Q Consensus 623 ~~~sfdeet~~~tkrc~cg~~iqve 647 (649)
||-.||+++.+++..|+||=..++.
T Consensus 11 eDm~~de~~~~y~ypCrCGd~F~it 35 (83)
T 1yop_A 11 EDMTFEPENQMFTYPCPCGDRFQIY 35 (83)
T ss_dssp GGSEEETTTTEEEEEETTTEEEEEE
T ss_pred HHcEEcCCCCEEEEeCCCCCeEEEC
Confidence 4588999999999999999555553
No 9
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=32.70 E-value=22 Score=30.45 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=21.5
Q ss_pred ccccCccccccceecccCCCceEEEe
Q 006346 622 IEDQSFDEENSVTTKRCHCGFTIQVE 647 (649)
Q Consensus 622 ~~~~sfdeet~~~tkrc~cg~~iqve 647 (649)
-||-.||+++.+++..|+||=..+|.
T Consensus 17 LeDm~~de~~~~y~y~CrCGd~F~it 42 (83)
T 1wge_A 17 IEDFQYDEDSETYFYPCPCGDNFAIT 42 (83)
T ss_dssp GGGSCCBTTTTEEEECCSSSSCEEEE
T ss_pred HHHceEccCCCEEEEeCCCCCEEEEC
Confidence 34688999999999999999766653
No 10
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=28.90 E-value=60 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 006346 539 QATSRWYQLLSSIVTRQRLNNC 560 (649)
Q Consensus 539 ~aL~~Wk~Llk~LrIreRL~~~ 560 (649)
+|++.-..-++|..||+|++++
T Consensus 4 qaikylqnnikgfiirqrvnde 25 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQRVNDE 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccceEEEeeecccC
Confidence 4566667778999999999875
Done!