Query 006348
Match_columns 649
No_of_seqs 86 out of 88
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 21:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 4.4E-92 9.5E-97 738.9 21.7 356 4-440 14-375 (375)
2 KOG2092 Uncharacterized conser 100.0 2.5E-59 5.3E-64 478.0 0.4 368 236-630 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 2.1E-45 4.6E-50 376.0 6.1 303 5-408 55-381 (381)
4 KOG4438 Centromere-associated 38.0 47 0.001 37.8 4.8 42 6-47 385-431 (446)
5 COG4168 SapB ABC-type antimicr 33.7 3.3E+02 0.0072 29.6 9.9 111 378-507 77-213 (321)
6 KOG4220 Muscarinic acetylcholi 28.3 9.7E+02 0.021 28.1 12.9 124 454-583 184-313 (503)
7 PF00317 Ribonuc_red_lgN: Ribo 26.8 57 0.0012 28.2 2.7 18 2-19 27-44 (83)
8 PF12679 ABC2_membrane_2: ABC- 23.7 7.2E+02 0.016 24.6 11.2 28 397-424 172-199 (277)
9 PF04021 Class_IIIsignal: Clas 22.7 1.2E+02 0.0027 22.0 3.3 24 21-44 2-25 (28)
10 CHL00182 tatC Sec-independent 22.1 1.4E+02 0.0029 31.5 4.8 93 400-493 76-185 (249)
11 TIGR01257 rim_protein retinal- 21.6 1.4E+03 0.031 31.8 14.5 32 392-423 740-771 (2272)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=4.4e-92 Score=738.87 Aligned_cols=356 Identities=27% Similarity=0.467 Sum_probs=261.4
Q ss_pred cchhHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCCcccccCcccCccceEEEEEeccCCCCCC
Q 006348 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (649)
Q Consensus 4 ~~~f~rv~~~~a~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~nFv-qqp~Cl~~~~~~~wpr~gilrVeI~~~~~w~~~ 82 (649)
|-+|+|+|.+|||++||++||+|||++|+|||++||+|+|||++|+ +|.+|++|+++. |||+||+||||+|| +|..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n-~~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRN-LESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecC-CCccc
Confidence 4589999999999999999999999999999999999999999999 778999999995 99999999999996 46666
Q ss_pred CCCCccccccccccchhhhhhhhhhccccccccCCcccccccCcCCCCCCCCcccccccccccccccccccChhhhhhhh
Q 006348 83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA 162 (649)
Q Consensus 83 ~~~s~~~d~~~~~~~~~~lei~~~l~~~f~k~~~~~~e~~~~~~t~~~~s~~~~d~~~~~~~ee~~~~~~~s~kE~~ka~ 162 (649)
+..++. +++++.+...+.. ..+++.... .++.+ .+..+....+.. . ..
T Consensus 92 i~~~~~-~ee~L~r~~qep~-----s~siEpsTt--------eeelt--~el~~~~s~kl~---~--~~----------- 139 (375)
T PF09746_consen 92 IFQQYY-DEESLLRNVQEPG-----SYSIEPSTT--------EEELT--TELFQNSSIKLE---S--DL----------- 139 (375)
T ss_pred hhhhhh-hhcchhhhhcccc-----ccCcCcccc--------chhhh--Hhhhhccccccc---c--cc-----------
Confidence 644433 3334444332221 111111110 00000 000000000000 0 00
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCcchhhhhcccccchhhhhhHhhhccccCCCeEEEecccee
Q 006348 163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGY 242 (649)
Q Consensus 163 v~~~~~k~~~~~S~~~~~~~~i~~~~~klw~i~g~~~~ld~pk~~~~~~~d~l~s~~V~~~e~~~k~~E~~yeYSlEyGf 242 (649)
-.+.++... +.....+..+.....|.++ +.+-.++.....||+||||+||||
T Consensus 140 ---~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~y~veYsleyG~ 191 (375)
T PF09746_consen 140 ---EPSFLSSDS------------SLNNTFDEDNISDTFDFEE-------------IMQLKNKVWPQDEYIVEYSLEYGF 191 (375)
T ss_pred ---cccccCCcc------------cccccccccccccccccch-------------hhcccccCCcccceeEEeehhcch
Confidence 000000000 0000001111111111110 011111222336899999999999
Q ss_pred eccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEecccCeEEeeccccC
Q 006348 243 FLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNCQTKEFYNLSYAQE 317 (649)
Q Consensus 243 LrLs~~aR~rhnIpt~~VtLd~-~~~CFGd~~~rlLL~~flGYDtILmNSlk----~~~gkGYLrN~~TgE~Y~l~~~~~ 317 (649)
||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +++|||||||++|||||||+++|.
T Consensus 192 LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y~fv~~~~ 271 (375)
T PF09746_consen 192 LRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHYRFVSMWW 271 (375)
T ss_pred hcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccceehhhhhh
Confidence 9999999999999999999995 99999999999999999999999999999 478999999999999999998863
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHHHH
Q 006348 318 PPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMI 397 (649)
Q Consensus 318 ~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FivdL~~~~r~~~P~a~Li~~hVi~sLVFVpvmI 397 (649)
++| ++|++ ++|+|++||++|||||||||||||+|||||+||++++.|++ .|++..|.+|++||
T Consensus 272 ----~~r-~sy~~--------a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~----~p~a~llt~il~lv 334 (375)
T PF09746_consen 272 ----MAR-SSYLA--------AFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF----FPAAPLLTVILALV 334 (375)
T ss_pred ----hhc-cHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc----cccceeeeeehhhH
Confidence 233 46654 67888999999999999999999999999999998887642 25666667788888
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhhhhhhhcccccCccccc
Q 006348 398 GILFFLFEFYDDQLLAFLVLILVWLCELFTLISCSVRTPISMK 440 (649)
Q Consensus 398 Gm~afMsEFF~D~~lAFyViliVWladqf~ai~c~vRT~~S~r 440 (649)
||+|||+|||||+++||||||+||+|||||+||| ||++|||
T Consensus 335 gm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c--~t~~~~r 375 (375)
T PF09746_consen 335 GMEAIMSEFFNDTTTAFYVILIVWLADQYDAICC--HTPISKR 375 (375)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEe--cCccCCC
Confidence 9999999999999999999999999999999996 8999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-59 Score=478.05 Aligned_cols=368 Identities=57% Similarity=0.870 Sum_probs=320.0
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 006348 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 315 (649)
Q Consensus 236 YSlEyGfLrLs~~aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDtILmNSlk~~~gkGYLrN~~TgE~Y~l~~~ 315 (649)
|.+|+|+..+|++++-+||| +-++.+.++++|||++|++++++.++||||+|++++.++-+.||.| .+|.|.-|
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frr---- 74 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRR---- 74 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHh----
Confidence 57899999999999999999 6899999999999999999999999999999999999999999999 88888744
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHH
Q 006348 316 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395 (649)
Q Consensus 316 ~~~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FivdL~~~~r~~~P~a~Li~~hVi~sLVFVpv 395 (649)
-+++++-++.|++.||+++|+++|++ +++++++.||+++.||..|.|++++|..++.|++.++.+|++.++||+|+
T Consensus 75 --l~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 75 --LPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 46788889999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhcccccCcccccchhHHHH--HHHHHhhheeeeecccchhHHHHHHH
Q 006348 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISCSVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAA 473 (649)
Q Consensus 396 mIGm~afMsEFF~D~~lAFyViliVWladqf~ai~c~vRT~~S~r~wpRfFy--LY~~~Fh~Yfysy~ygfSyLAL~ts~ 473 (649)
+||+..+++||++|+..+||+++.+|+|+.|.+.+ .|++++|+|+||+|+ +|.+.||+|||+|.||++|++..++.
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~--e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~ 228 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDS--ERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTA 228 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeec--ccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHH-HHHHHhhhCCCccccccceeccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006348 474 AFVQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAM 552 (649)
Q Consensus 474 lfi~HsMLyF~~~yElPal~r~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (649)
.+++|+.+|||+|+|+|+++++++ +||...+|+|.+++++++++++|+|++ +|....+..+.+..- ....+..-..
T Consensus 229 yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~lh--n~q~~ehy~F 305 (381)
T KOG2092|consen 229 YGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPLH--NTQNTEHYSF 305 (381)
T ss_pred HHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCccc--cccccceEEE
Confidence 999999999999999999999999 888899999999999999999999999 776554443322211 1122333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhc
Q 006348 553 PPTNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVRE 629 (649)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (649)
.+ ||.|+. +-.+.......| ..|..+-+| +. +.|-+|+| |++|+||||+++|++++++||+|+++
T Consensus 306 va-~~~g~a---sYl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg 373 (381)
T KOG2092|consen 306 VA-DGGGVA---SYLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVG 373 (381)
T ss_pred ee-ccccHH---HHHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhC
Confidence 44 333331 111111222233 333344444 44 78999999 99999999999999999999999998
Q ss_pred c
Q 006348 630 Q 630 (649)
Q Consensus 630 ~ 630 (649)
.
T Consensus 374 ~ 374 (381)
T KOG2092|consen 374 E 374 (381)
T ss_pred c
Confidence 3
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-45 Score=375.99 Aligned_cols=303 Identities=21% Similarity=0.230 Sum_probs=213.5
Q ss_pred chhHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCCcccccCcccCccceEEEEEeccCCCC-CC
Q 006348 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWS-QN 82 (649)
Q Consensus 5 ~~f~rv~~~~a~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~nFv-qqp~Cl~~~~~~~wpr~gilrVeI~~~~~w~-~~ 82 (649)
.++.|++..|+..+||..||++|...|++|.++...|++||++|+ .|.+|++++++. |||-||+|||+.+....- .+
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s~r~p~ 133 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHASHRLPT 133 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecchhcchH
Confidence 478999999999999999999999999999999999999999999 888999999996 999999999998743211 00
Q ss_pred CCCCccccc-cccccchhhhhhhhhhc-------------cccccccCCcccccccCcCCCCCCCCcccccccccccccc
Q 006348 83 DSDSNVVDV-TSVDNAINELEVSGKLA-------------LKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEAR 148 (649)
Q Consensus 83 ~~~s~~~d~-~~~~~~~~~lei~~~l~-------------~~f~k~~~~~~e~~~~~~t~~~~s~~~~d~~~~~~~ee~~ 148 (649)
. ...-.++ ++..-..-..|++.++. ..-|-. |+-.-++++.+.+++.
T Consensus 134 F-l~f~~~~~~~~vF~~~aI~i~s~l~~~~~e~~e~~m~~~~~~~~-----~~f~ld~e~~~i~k~~------------- 194 (381)
T KOG2092|consen 134 F-LLFFVHVIESLVFVPIAIGILSFLFEFYDEQLEAFMVLVLVWLC-----ELFTLDSERTPISKKF------------- 194 (381)
T ss_pred H-HHHHhhhcccccccchhhhHHHhhHHHhcccHHHHHHHHHHHHH-----HheeeecccccccCCC-------------
Confidence 0 0000000 00000001112211111 111110 0000000000000000
Q ss_pred cccccChhhhhhhhhhccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCcchhhhhcccccchhhhhhHhhhccc
Q 006348 149 NSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTK 228 (649)
Q Consensus 149 ~~~~~s~kE~~ka~v~~~~~k~~~~~S~~~~~~~~i~~~~~klw~i~g~~~~ld~pk~~~~~~~d~l~s~~V~~~e~~~k 228 (649)
. +.|..+ | +.++.-- ..+=+-.+
T Consensus 195 --~---p~e~Ln-----------------------------------------d---------~~e~~fh--~~~f~~~~ 217 (381)
T KOG2092|consen 195 --F---PREFLN-----------------------------------------D---------LYELVFH--IYFFSYAY 217 (381)
T ss_pred --C---cHHHhc-----------------------------------------c---------hhhcccc--hhhhhhcc
Confidence 0 000000 0 0000000 00011122
Q ss_pred cCCCeEEEeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEec
Q 006348 229 AFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNC 304 (649)
Q Consensus 229 ~~E~~yeYSlEyGfLrLs~~aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDtILmNSlk----~~~gkGYLrN~ 304 (649)
-++|.+||+++||+|||++..|+|++||+++++||++++||||+..|++|+.|+||||++|.+++ |..++||++|.
T Consensus 218 g~~Y~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~ 297 (381)
T KOG2092|consen 218 GFSYLVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNT 297 (381)
T ss_pred CchHHHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 36788899999999999999999999999999999999999999999999999999999999987 56889999999
Q ss_pred ccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhh----hccccchh
Q 006348 305 QTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHA----QHRLPTFQ 380 (649)
Q Consensus 305 ~TgE~Y~l~~~~~~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FivdL~~~~----r~~~P~a~ 380 (649)
+|+|||+|+..+. ++ .+|+.+.. +| -+||+.+||+|||+|||||+||+||++|. ....|++|
T Consensus 298 q~~ehy~Fva~~~-----g~-asYl~a~a---~m-----~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~ap 363 (381)
T KOG2092|consen 298 QNTEHYSFVADGG-----GV-ASYLEAQA---EM-----EIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAP 363 (381)
T ss_pred cccceEEEeeccc-----cH-HHHHHHhh---hH-----hheeccccccccccccceeehHHHHHHHHHhCCCCCcccch
Confidence 9999999997653 34 68886432 33 35589999999999999999999999875 44569999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q 006348 381 LIFVHVIESLVFVPIMIGILFFLFEFYD 408 (649)
Q Consensus 381 Li~~hVi~sLVFVpvmIGm~afMsEFF~ 408 (649)
|+ +|+++|| ||+ |+|||+
T Consensus 364 ll--tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 364 LL--TVFLALV------GED--EAEFFA 381 (381)
T ss_pred HH--HHHHHHh------Cch--hhhhcC
Confidence 86 7888887 999 999996
No 4
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.99 E-value=47 Score=37.78 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.7
Q ss_pred hhHHHHHHHh-----hhcCchhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 006348 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (649)
Q Consensus 6 ~f~rv~~~~a-----~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~n 47 (649)
+..|+++.+. ..+-+.+|+.-||-+.++||.++|+|..+|++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777774 33348899999999999999999999999965
No 5
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=33.65 E-value=3.3e+02 Score=29.62 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHhhh-hHHHHHHHH-HHHHhhccchhHHHHHHHHHHhhhhhhhcccccCcccc-cchhHHHHHHHHHhh
Q 006348 378 TFQLIFVHVIESLVF-VPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISCSVRTPISM-KFFPRFFLLYFLVFH 454 (649)
Q Consensus 378 ~a~Li~~hVi~sLVF-VpvmIGm~a-fMsEFF~D~~lAFyViliVWladqf~ai~c~vRT~~S~-r~wpRfFyLY~~~Fh 454 (649)
+..|-++..+++++| .|+ ||++ .+++=+-|+.+.+.-.+ ..|+ -||.-...+|+++.|
T Consensus 77 T~ELC~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~s~~-----------------G~SiPvFWlAl~ll~ffslh 137 (321)
T COG4168 77 TMELCFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAISLL-----------------GFSIPVFWLALLLLLFFSLH 137 (321)
T ss_pred HHHHHHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHHHHh-----------------ccCchHHHHHHHHHHHHHHh
Confidence 355556666677665 454 7775 45555555555544211 1111 488899999999999
Q ss_pred heeeeecccch---------hHHHHHHHH------------HHHHHHHHHHhhccchH--HHHHHHHHHHHhhhCC
Q 006348 455 IYFFSYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 507 (649)
Q Consensus 455 ~Yfysy~ygfS---------yLAL~ts~l------------fi~HsMLyF~~~yElPa--l~r~~~~r~~~~~~~~ 507 (649)
...+.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 138 ~~~~pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 138 LGWLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ccceecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 99999988884 789988886 35566543322222232 3478888877766554
No 6
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=28.26 E-value=9.7e+02 Score=28.05 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=57.2
Q ss_pred hheeeeecccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhCCCccccccceecccee----eeecccC
Q 006348 454 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 529 (649)
Q Consensus 454 h~Yfysy~ygfSyLAL~ts~lfi~HsMLyF~~~yElPal~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 529 (649)
|+=|++=|+=--+-|..+-++=..=+.+.||+=| |--++|+.++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 7788886654445566665665666666777655 33444544444433333333444334444 2233333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 006348 530 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 583 (649)
Q Consensus 530 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 583 (649)
.|+.++. +...+++.+.+..++.+.++..-.... +..+..-.+..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 3333332 222233334444455555332211111 22222223456677777754
No 7
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=26.79 E-value=57 Score=28.22 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred CccchhHHHHHHHhhhcC
Q 006348 2 DPEHTFIRVQERFSRVLT 19 (649)
Q Consensus 2 ~~~~~f~rv~~~~a~~~~ 19 (649)
+|+++|.|||...|..-+
T Consensus 27 tpq~~~~RVA~~la~~e~ 44 (83)
T PF00317_consen 27 TPQEMFMRVAMALASAEP 44 (83)
T ss_dssp SHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 699999999999998665
No 8
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=23.72 E-value=7.2e+02 Score=24.61 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhh
Q 006348 397 IGILFFLFEFYDDQLLAFLVLILVWLCE 424 (649)
Q Consensus 397 IGm~afMsEFF~D~~lAFyViliVWlad 424 (649)
+++-.+++-+++++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666677888888888888777777544
No 9
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=22.67 E-value=1.2e+02 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.557 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 006348 21 RVRAYLEYIYLFIAITLFCVLVVM 44 (649)
Q Consensus 21 ~VRr~iEyi~L~~AI~lF~iLvym 44 (649)
|-...+||+.|+.+++.-.+.+-.
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~~ 25 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVIY 25 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHh
Confidence 556789999999998887776543
No 10
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=22.12 E-value=1.4e+02 Score=31.45 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=56.5
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhhhhhhhcccccCcccccchhHHHH-----HHHHHhhheeeeecccchhHH------
Q 006348 400 LFFLFEFYDDQLLAFLVLILVWLCELFTLISCSVRTPISMKFFPRFFL-----LYFLVFHIYFFSYAYGFSYMA------ 468 (649)
Q Consensus 400 ~afMsEFF~D~~lAFyViliVWladqf~ai~c~vRT~~S~r~wpRfFy-----LY~~~Fh~Yfysy~ygfSyLA------ 468 (649)
|+|+..+----.+++++-+.+|+.+.+.-++.++.-.. ||+..++.. .+..+...|++-+|..+..+.
T Consensus 76 E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~E-r~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~ 154 (249)
T CHL00182 76 EYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKE-RKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDV 154 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 33444433444567778888899999999976554443 344333332 344455556656665544322
Q ss_pred ------HHHHHHHHHHHHHHHHhhccchHHH
Q 006348 469 ------LGTAAAFVQHLILYFWNHFEVPALQ 493 (649)
Q Consensus 469 ------L~ts~lfi~HsMLyF~~~yElPal~ 493 (649)
+.--.-|+.+.++.|--.||+|.+-
T Consensus 155 ~~~~~~i~~Yl~f~~~~~l~fGl~FelPvi~ 185 (249)
T CHL00182 155 VEPLWSFDQYFDFILVLFFSTGLAFQIPIIQ 185 (249)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122346778999999999999763
No 11
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=21.63 E-value=1.4e+03 Score=31.75 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 006348 392 FVPIMIGILFFLFEFYDDQLLAFLVLILVWLC 423 (649)
Q Consensus 392 FVpvmIGm~afMsEFF~D~~lAFyViliVWla 423 (649)
|...+|+.-++||-||+...+|=.+..++|++
T Consensus 740 y~~s~I~~~fliS~fFska~~A~~~~~li~f~ 771 (2272)
T TIGR01257 740 FSTATIMQCFLLSTFFSKASLAAACSGVIYFT 771 (2272)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34556677778888888888877777777665
Done!